assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003986635.1_ASM398663v1	CP028311	Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 chromosome, complete genome	2	967713-968717	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA|57aa|down_1|CP028311.1_969991_970162_+,NA|81aa|down_5|CP028311.1_974696_974939_-	NA|179aa|up_9|CP028311.1_956261_956798_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP028311.1_956794_957265_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP028311.1_957279_957786_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP028311.1_957805_958579_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP028311.1_958591_961291_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP028311.1_961370_961958_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP028311.1_962562_963363_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP028311.1_963590_965228_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP028311.1_965310_966609_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP028311.1_966744_967416_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|CP028311.1_969700_970063_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_1|CP028311.1_969991_970162_+	NA	NA|600aa|down_2|CP028311.1_970486_972286_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP028311.1_972285_973998_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|CP028311.1_974073_974808_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_5|CP028311.1_974696_974939_-	NA	NA|318aa|down_6|CP028311.1_975020_975974_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|CP028311.1_976417_979081_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_8|CP028311.1_979092_980649_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_9|CP028311.1_980645_981206_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_003986635.1_ASM398663v1	CP028311	Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 chromosome, complete genome	3	984974-986107	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,18,18	18	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|81aa|up_9|CP028311.1_974696_974939_-,NA	NA|81aa|up_9|CP028311.1_974696_974939_-	NA	NA|318aa|up_8|CP028311.1_975020_975974_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP028311.1_976417_979081_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP028311.1_979092_980649_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP028311.1_980645_981206_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP028311.1_981219_982278_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP028311.1_982288_983035_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP028311.1_983016_983667_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP028311.1_983663_984584_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP028311.1_984583_984877_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP028311.1_986650_987697_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP028311.1_987947_988856_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP028311.1_988865_990305_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP028311.1_990291_990897_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP028311.1_990914_991271_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP028311.1_991461_991773_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP028311.1_991791_992502_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP028311.1_992501_992981_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP028311.1_992977_994027_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP028311.1_994007_994769_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003986635.1_ASM398663v1	CP028311	Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 chromosome, complete genome	4	986181-986636	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,7,7	7	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA|81aa|up_9|CP028311.1_974696_974939_-,NA	NA|81aa|up_9|CP028311.1_974696_974939_-	NA	NA|318aa|up_8|CP028311.1_975020_975974_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP028311.1_976417_979081_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP028311.1_979092_980649_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP028311.1_980645_981206_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP028311.1_981219_982278_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP028311.1_982288_983035_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP028311.1_983016_983667_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP028311.1_983663_984584_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP028311.1_984583_984877_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP028311.1_986650_987697_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP028311.1_987947_988856_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP028311.1_988865_990305_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP028311.1_990291_990897_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP028311.1_990914_991271_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP028311.1_991461_991773_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP028311.1_991791_992502_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP028311.1_992501_992981_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP028311.1_992977_994027_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP028311.1_994007_994769_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003986635.1_ASM398663v1	CP028311	Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN067218 chromosome, complete genome	5	1177649-1177758	5	CRISPRCasFinder	no		cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	Orphan	TGTCCCACCCTGTACCACTTTTTTTTAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	NA,NA|276aa|down_2|CP028311.1_1180546_1181374_+,NA|198aa|down_4|CP028311.1_1183291_1183885_-	NA|212aa|up_9|CP028311.1_1169026_1169662_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|401aa|up_8|CP028311.1_1169735_1170938_-	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|338aa|up_7|CP028311.1_1171232_1172246_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_6|CP028311.1_1172256_1173237_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_5|CP028311.1_1173233_1173608_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_4|CP028311.1_1173604_1174126_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_3|CP028311.1_1174238_1174523_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|119aa|up_2|CP028311.1_1174617_1174974_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|273aa|up_1|CP028311.1_1175126_1175945_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|428aa|up_0|CP028311.1_1175989_1177273_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|690aa|down_0|CP028311.1_1177775_1179845_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|CP028311.1_1179880_1180096_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|276aa|down_2|CP028311.1_1180546_1181374_+	NA	NA|398aa|down_3|CP028311.1_1181708_1182902_-	pfam02810, SEC-C, SEC-C motif	NA|198aa|down_4|CP028311.1_1183291_1183885_-	NA	NA|388aa|down_5|CP028311.1_1185777_1186941_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|727aa|down_6|CP028311.1_1186948_1189129_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|470aa|down_7|CP028311.1_1189125_1190535_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|3825aa|down_8|CP028311.1_1190599_1202074_-	pfam17936, Big_6, Bacterial Ig domain	NA|161aa|down_9|CP028311.1_1202689_1203172_-	PRK05422, smpB, SsrA-binding protein SmpB
