assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	1	74204-74284	1	CRISPRCasFinder	no	csa3	csa3,RT,WYL,cas3,DEDDh,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|CP029474.1_69078_69309_-,NA|364aa|up_0|CP029474.1_73095_74187_+,NA|35aa|down_0|CP029474.1_74619_74724_-,NA|61aa|down_1|CP029474.1_75156_75339_-,NA|53aa|down_2|CP029474.1_75403_75562_+,NA|31aa|down_3|CP029474.1_75998_76091_+	NA|237aa|up_9|CP029474.1_64688_65399_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP029474.1_65519_65963_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP029474.1_66163_66577_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP029474.1_67033_68407_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP029474.1_69078_69309_-	NA	NA|313aa|up_4|CP029474.1_69339_70278_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP029474.1_70713_71379_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP029474.1_71530_71851_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP029474.1_71852_72830_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP029474.1_73095_74187_+	NA	NA|35aa|down_0|CP029474.1_74619_74724_-	NA	NA|61aa|down_1|CP029474.1_75156_75339_-	NA	NA|53aa|down_2|CP029474.1_75403_75562_+	NA	NA|31aa|down_3|CP029474.1_75998_76091_+	NA	NA|286aa|down_4|CP029474.1_76219_77077_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|CP029474.1_77144_77927_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|CP029474.1_78158_79964_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|CP029474.1_80644_82183_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|CP029474.1_82217_84350_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|CP029474.1_84361_84796_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	3	196063-196143	3	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118|196088-196118	CP029474.1_1516044-1516074|CP029474.1_1516100-1516130|CP029474.1_185287-185317|CP029474.1_360873-360903|CP029474.1_771702-771732|CP029474.1_1068710-1068680|CP029474.1_1335450-1335420|CP029474.1_1516156-1516186|CP029474.1_1552142-1552172|CP029474.1_1734356-1734386|CP029474.1_1836912-1836882|CP029474.1_2044534-2044504|CP029474.1_2132936-2132966|CP029474.1_2329020-2328990|CP029474.1_2644741-2644771	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|55aa|up_9|CP029474.1_186596_186761_+,NA|106aa|up_8|CP029474.1_187005_187323_+,NA|84aa|up_5|CP029474.1_192444_192696_+,NA|62aa|up_0|CP029474.1_195835_196021_+,NA	NA|55aa|up_9|CP029474.1_186596_186761_+	NA	NA|106aa|up_8|CP029474.1_187005_187323_+	NA	NA|1056aa|up_7|CP029474.1_187506_190674_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP029474.1_190790_192056_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP029474.1_192444_192696_+	NA	NA|255aa|up_4|CP029474.1_192687_193452_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP029474.1_193613_194054_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP029474.1_194046_195258_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP029474.1_195359_195710_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|CP029474.1_195835_196021_+	NA	NA|341aa|down_0|CP029474.1_196286_197309_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP029474.1_197328_197928_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP029474.1_197934_198168_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP029474.1_198173_198620_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP029474.1_198633_199119_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP029474.1_199115_200375_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP029474.1_200437_200932_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP029474.1_200933_201440_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP029474.1_201470_202475_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP029474.1_202644_203250_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	4	1107418-1107519	4	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|70aa|up_9|CP029474.1_1098977_1099187_-,NA|128aa|up_7|CP029474.1_1100011_1100395_-,NA|33aa|up_1|CP029474.1_1106642_1106741_+,NA|86aa|up_0|CP029474.1_1106951_1107209_-,NA|221aa|down_1|CP029474.1_1108609_1109272_-,NA|179aa|down_7|CP029474.1_1115363_1115900_-	NA|70aa|up_9|CP029474.1_1098977_1099187_-	NA	NA|194aa|up_8|CP029474.1_1099364_1099946_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|CP029474.1_1100011_1100395_-	NA	NA|209aa|up_6|CP029474.1_1100664_1101291_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|CP029474.1_1101734_1103258_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP029474.1_1103273_1103843_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP029474.1_1104334_1105090_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP029474.1_1105169_1106558_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|CP029474.1_1106642_1106741_+	NA	NA|86aa|up_0|CP029474.1_1106951_1107209_-	NA	NA|319aa|down_0|CP029474.1_1107535_1108492_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP029474.1_1108609_1109272_-	NA	NA|136aa|down_2|CP029474.1_1109414_1109822_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP029474.1_1110334_1110913_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP029474.1_1110912_1112181_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP029474.1_1112218_1113685_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP029474.1_1113709_1115251_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP029474.1_1115363_1115900_-	NA	NA|235aa|down_8|CP029474.1_1116291_1116996_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP029474.1_1117394_1117667_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	5	1462354-1462436	5	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|69aa|up_9|CP029474.1_1448968_1449175_+,NA|56aa|down_0|CP029474.1_1462647_1462815_+,NA|34aa|down_2|CP029474.1_1464091_1464193_+,NA|82aa|down_4|CP029474.1_1465841_1466087_-,NA|89aa|down_7|CP029474.1_1467887_1468154_+	NA|69aa|up_9|CP029474.1_1448968_1449175_+	NA	NA|237aa|up_8|CP029474.1_1449262_1449973_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP029474.1_1449956_1450961_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP029474.1_1451434_1453375_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP029474.1_1453644_1455528_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP029474.1_1455539_1457321_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP029474.1_1457542_1458520_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP029474.1_1458512_1460027_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP029474.1_1460266_1461325_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|175aa|up_0|CP029474.1_1461663_1462188_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|CP029474.1_1462647_1462815_+	NA	NA|306aa|down_1|CP029474.1_1463083_1464001_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|CP029474.1_1464091_1464193_+	NA	NA|502aa|down_3|CP029474.1_1464270_1465776_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_4|CP029474.1_1465841_1466087_-	NA	NA|167aa|down_5|CP029474.1_1466116_1466617_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_6|CP029474.1_1466636_1467503_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_7|CP029474.1_1467887_1468154_+	NA	NA|133aa|down_8|CP029474.1_1468303_1468702_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_9|CP029474.1_1468664_1470770_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	6	1503301-1503379	6	CRISPRCasFinder	no	cas3	csa3,RT,WYL,cas3,DEDDh,DinG	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	1503325-1503355	CP029474.1_2348809-2348839	NA	1	1	Unclear	csa3,RT,WYL,cas3,DEDDh,DinG	NA|35aa|up_7|CP029474.1_1494177_1494282_+,NA|36aa|up_5|CP029474.1_1495714_1495822_+,NA|63aa|down_5|CP029474.1_1508703_1508892_-	NA|191aa|up_9|CP029474.1_1490618_1491191_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP029474.1_1491604_1494136_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP029474.1_1494177_1494282_+	NA	NA|370aa|up_6|CP029474.1_1494450_1495561_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP029474.1_1495714_1495822_+	NA	NA|280aa|up_4|CP029474.1_1495969_1496809_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP029474.1_1496982_1497633_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP029474.1_1497629_1497866_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP029474.1_1498134_1500120_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP029474.1_1500127_1502974_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP029474.1_1503637_1504570_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP029474.1_1504575_1505415_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP029474.1_1505422_1505908_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP029474.1_1505915_1507355_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP029474.1_1507421_1508357_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|63aa|down_5|CP029474.1_1508703_1508892_-	NA	NA|304aa|down_6|CP029474.1_1509242_1510154_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|CP029474.1_1510150_1511146_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|CP029474.1_1511256_1512201_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|CP029474.1_1512764_1513352_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	7	1508756-1509025	1	CRT	no	cas3	csa3,RT,WYL,cas3,DEDDh,DinG	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	38	1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508792-1508813|1508850-1508872|1508850-1508872|1508850-1508872|1508850-1508872|1508850-1508872|1508850-1508872|1508850-1508872|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508909-1508930|1508967-1508989|1508967-1508989|1508967-1508989|1508967-1508989|1508967-1508989|1508967-1508989|1508967-1508989	CP029474.1_870365-870344|CP029474.1_993424-993403|CP029474.1_1335386-1335365|CP029474.1_1461396-1461417|CP029474.1_1551879-1551900|CP029474.1_2044470-2044449|CP029474.1_2314402-2314423|CP029474.1_2328957-2328936|CP029474.1_2646089-2646110|CP029474.1_1638357-1638378|CP029474.1_2348664-2348685|CP029474.1_2348897-2348918|CP029474.1_185234-185256|CP029474.1_1462367-1462345|CP029474.1_1462645-1462623|CP029474.1_2044587-2044565|CP029474.1_2646147-2646169|CP029474.1_2132883-2132905|CP029474.1_2706024-2706046|CP029474.1_870365-870344|CP029474.1_993424-993403|CP029474.1_1335386-1335365|CP029474.1_1461396-1461417|CP029474.1_1551879-1551900|CP029474.1_2044470-2044449|CP029474.1_2314402-2314423|CP029474.1_2328957-2328936|CP029474.1_2646089-2646110|CP029474.1_1638357-1638378|CP029474.1_2348664-2348685|CP029474.1_2348897-2348918|CP029474.1_185234-185256|CP029474.1_1462367-1462345|CP029474.1_1462645-1462623|CP029474.1_2044587-2044565|CP029474.1_2646147-2646169|CP029474.1_2132883-2132905|CP029474.1_2706024-2706046	NA	4	4	Unclear	csa3,RT,WYL,cas3,DEDDh,DinG	NA,NA	NA|280aa|up_9|CP029474.1_1495969_1496809_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP029474.1_1496982_1497633_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP029474.1_1497629_1497866_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP029474.1_1498134_1500120_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP029474.1_1500127_1502974_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP029474.1_1503637_1504570_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP029474.1_1504575_1505415_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|CP029474.1_1505422_1505908_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|CP029474.1_1505915_1507355_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP029474.1_1507421_1508357_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP029474.1_1509242_1510154_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP029474.1_1510150_1511146_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP029474.1_1511256_1512201_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP029474.1_1512764_1513352_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|CP029474.1_1513594_1514497_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP029474.1_1515199_1515829_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP029474.1_1516641_1517655_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP029474.1_1517707_1518718_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP029474.1_1518856_1520047_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP029474.1_1520168_1520930_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	8	1551806-1551887	7	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1551830-1551863	CP029474.1_2044578-2044545	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|38aa|up_1|CP029474.1_1550708_1550822_+,NA|38aa|down_0|CP029474.1_1552175_1552289_+	NA|206aa|up_9|CP029474.1_1545562_1546180_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP029474.1_1546334_1546829_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP029474.1_1547227_1547650_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP029474.1_1547797_1548514_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP029474.1_1548596_1549136_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP029474.1_1549286_1549607_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP029474.1_1549750_1550107_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP029474.1_1550264_1550645_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP029474.1_1550708_1550822_+	NA	NA|293aa|up_0|CP029474.1_1550823_1551702_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP029474.1_1552175_1552289_+	NA	NA|129aa|down_1|CP029474.1_1552498_1552885_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP029474.1_1552877_1553174_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP029474.1_1553423_1554449_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP029474.1_1554441_1555137_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP029474.1_1555154_1555976_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_6|CP029474.1_1556118_1557339_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_7|CP029474.1_1557352_1558741_-	pfam02037, SAP, SAP domain	NA|191aa|down_8|CP029474.1_1558767_1559340_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_9|CP029474.1_1559511_1559733_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	9	2314326-2314410	8	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	2314352-2314384	CP029474.1_2044578-2044546	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA,NA	NA|228aa|up_9|CP029474.1_2303535_2304219_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|CP029474.1_2304462_2304639_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|CP029474.1_2304931_2306278_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|CP029474.1_2306284_2307037_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|CP029474.1_2307038_2307977_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|CP029474.1_2307980_2309120_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|CP029474.1_2309255_2311088_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|CP029474.1_2311156_2311783_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|CP029474.1_2311814_2312792_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|CP029474.1_2312892_2314017_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|CP029474.1_2314582_2316406_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|CP029474.1_2316751_2317003_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|CP029474.1_2317047_2318022_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|CP029474.1_2318078_2320226_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|CP029474.1_2320284_2320746_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|CP029474.1_2320837_2321524_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|CP029474.1_2321563_2322280_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|CP029474.1_2322282_2322636_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|CP029474.1_2322636_2323221_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|CP029474.1_2323210_2323780_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCA_003991015.1_ASM399101v1	CP029474	Staphylococcus aureus strain USA 100 isolate 30-47 chromosome, complete genome	10	2705943-2706024	9	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2705967-2706000|2705967-2706000|2705967-2706000|2705967-2706000|2705967-2706000	CP029474.1_1503300-1503333|CP029474.1_1831317-1831284|CP029474.1_2441060-2441027|CP029474.1_641276-641309|CP029474.1_2048919-2048952	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|53aa|up_8|CP029474.1_2696264_2696423_-,NA|33aa|up_7|CP029474.1_2696705_2696804_-,NA	NA|127aa|up_9|CP029474.1_2695626_2696007_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|53aa|up_8|CP029474.1_2696264_2696423_-	NA	NA|33aa|up_7|CP029474.1_2696705_2696804_-	NA	NA|429aa|up_6|CP029474.1_2697319_2698606_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|97aa|up_5|CP029474.1_2698884_2699175_-	pfam03642, MAP, MAP domain	NA|368aa|up_4|CP029474.1_2699189_2700293_-	pfam03642, MAP, MAP domain	NA|331aa|up_3|CP029474.1_2700743_2701736_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|CP029474.1_2701969_2702986_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP029474.1_2703007_2704063_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|CP029474.1_2704498_2705722_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP029474.1_2706165_2707473_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|CP029474.1_2708012_2709629_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|CP029474.1_2709704_2709989_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|CP029474.1_2710163_2710907_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|CP029474.1_2710931_2712191_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|CP029474.1_2712387_2713014_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|CP029474.1_2713374_2714160_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|CP029474.1_2714759_2714894_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|CP029474.1_2715129_2715693_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|CP029474.1_2715695_2715839_+	smart00794, AgrD, Staphylococcal AgrD protein
