The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	27282	122073	4106512	integrase,tRNA,transposase	Planktothrix_phage(25.0%)	95	44518:44577	128349:128370
AZS02480.1|27282_28185_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02481.1|28314_28614_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02482.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02483.1|29141_30359_-	thiolase	NA	NA	NA	NA	NA
AZS02484.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZS02485.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05851.1|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS02486.1|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AZS02487.1|34673_35576_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02488.1|35572_36763_-	transporter	NA	NA	NA	NA	NA
AZS02489.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZS02490.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZS02491.1|40060_40600_+	D,D-heptose 1,7-bisphosphate phosphatase	NA	NA	NA	NA	NA
AZS02492.1|40603_41332_+	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZS02493.1|41318_42212_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02494.1|42282_42678_+	glyoxalase I	NA	NA	NA	NA	NA
AZS02495.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZS02496.1|43346_43526_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02497.1|43663_44614_+|integrase	integrase	integrase	NA	NA	NA	NA
44518:44577	attL	CTACAACTGGCATCGACCCCACCAAGGCATCGGGCGCGCTGTACCCATCTCCAGACTCAA	NA	NA	NA	NA
AZS05852.1|45224_45749_+	hypothetical protein	NA	NA	NA	NA	NA
44518:44577	attL	CTACAACTGGCATCGACCCCACCAAGGCATCGGGCGCGCTGTACCCATCTCCAGACTCAA	NA	NA	NA	NA
AZS02498.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZS02499.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02500.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZS02501.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZS02502.1|50189_51092_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02503.1|51134_52391_+	AmpG family muropeptide MFS transporter	NA	NA	NA	NA	NA
AZS02504.1|53622_54357_-	glutamate racemase	NA	NA	NA	NA	NA
AZS02505.1|54362_54953_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZS02506.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS02507.1|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AZS02508.1|56504_57404_-	ABC transporter	NA	NA	NA	NA	NA
AZS02509.1|57497_58448_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02510.1|59248_60475_-	serine kinase HipA	NA	NA	NA	NA	NA
AZS02511.1|60474_60888_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS05853.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02512.1|62442_63417_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02513.1|63473_64055_-	glutamine amidotransferase	NA	NA	NA	NA	NA
AZS02514.1|64067_64370_-	ferredoxin	NA	NA	NA	NA	NA
AZS02515.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZS02516.1|65581_66853_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02517.1|66883_67138_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02518.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02519.1|69133_70036_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02520.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS02521.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZS02522.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZS02523.1|74357_74939_-	N-acetyl-anhydromuranmyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZS02524.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02525.1|75280_76123_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02526.1|76228_77638_+	signal recognition particle	NA	NA	NA	NA	NA
AZS02527.1|77634_78585_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05854.1|78659_79604_+|integrase	integrase	integrase	NA	NA	NA	NA
79508:79600	attR	CTACAACTGGCATCGACCCCACCAAGGCATCGGGCGCGCTGTACCCATCTCCAGACTCAACCTGGACGAATACAACCTATTGACAGTTCACAG	NA	NA	NA	NA
AZS02528.1|79600_81475_-	capsular biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
79508:79600	attR	CTACAACTGGCATCGACCCCACCAAGGCATCGGGCGCGCTGTACCCATCTCCAGACTCAACCTGGACGAATACAACCTATTGACAGTTCACAG	NA	NA	NA	NA
AZS02529.1|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AZS02530.1|83523_84630_-	glycosyl transferase	NA	NA	NA	NA	NA
AZS02531.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZS02532.1|85481_86669_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZS02533.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZS02534.1|88014_89103_-	UDP-N-acetyl glucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZS02535.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZS02536.1|90214_90790_-	serine acetyltransferase	NA	NA	NA	NA	NA
AZS02537.1|90793_91846_-	oxidoreductase	NA	NA	NA	NA	NA
AZS02538.1|91976_92984_+	heptosyltransferase	NA	NA	NA	NA	NA
AZS02539.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZS02540.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02541.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZS02542.1|95268_96135_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZS02543.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS02544.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZS02545.1|98332_98800_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02546.1|98889_99111_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02547.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02548.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS05855.1|100607_101786_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AZS02549.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZS02550.1|102808_103084_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02551.1|103091_103754_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AZS02552.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZS02553.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZS02554.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZS02555.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZS02556.1|107427_108330_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02557.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZS02558.1|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AZS02559.1|111243_111927_-	cell division protein	NA	NA	NA	NA	NA
AZS02560.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZS05856.1|113906_114254_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02561.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02562.1|114944_115961_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS02563.1|116036_116837_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS02564.1|116833_117709_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS02565.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02566.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZS02567.1|120200_121022_-	metallophosphatase	NA	NA	NA	NA	NA
AZS02568.1|121122_122073_-|integrase	integrase	integrase	NA	NA	NA	NA
128349:128370	attR	TTTCGTGCTGGGCTGGCTGGCC	NA	NA	NA	NA
>prophage 2
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	232714	307010	4106512	integrase,transposase	uncultured_Mediterranean_phage(15.38%)	58	254815:254831	308358:308374
AZS02678.1|232714_233617_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02679.1|233613_234804_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZS02680.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZS02681.1|235776_236880_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS02682.1|237071_238088_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS02683.1|238369_238858_+	ADP-heptose synthase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZS02684.1|238878_239838_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02685.1|239838_240165_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02686.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZS02687.1|240943_241795_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZS02688.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
AZS02689.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AZS02690.1|243597_245487_-	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZS02691.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZS02692.1|249593_250496_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02693.1|250852_251545_-	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZS02694.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
AZS02695.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
AZS02696.1|253462_253939_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZS05863.1|254041_255883_+	acetolactate synthase	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
254815:254831	attL	GCTGGTGCGCCAGAGCG	NA	NA	NA	NA
AZS02697.1|255938_256697_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS02698.1|256724_258158_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS02699.1|258231_259011_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZS02700.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS02701.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZS02702.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02703.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZS02704.1|264542_267164_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02705.1|268091_268550_-	hypothetical protein	NA	NA	NA	NA	NA
AZS02706.1|268828_271072_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZS02707.1|271268_273293_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZS02708.1|273416_274379_-	immunogenic protein	NA	NA	NA	NA	NA
AZS02709.1|274590_275730_+	alanine racemase	NA	NA	NA	NA	NA
AZS02710.1|275752_276718_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02711.1|276913_278104_+	acetylornithine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZS02712.1|278117_278363_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02713.1|278391_280413_-	3-methylcrotonyl-CoA carboxylase	NA	NA	NA	NA	NA
AZS05864.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AZS02714.1|282167_283337_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS02715.1|286266_287169_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02716.1|287192_288251_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZS02717.1|288325_288700_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02718.1|288913_289258_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02719.1|289254_290205_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02720.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS02721.1|292694_293858_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AZS02722.1|293988_294192_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05865.1|294276_295248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02723.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
AZS02724.1|296833_297625_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02725.1|297743_300197_-	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZS05866.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AZS02726.1|301403_302813_-	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AZS02727.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZS02728.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZS02729.1|303816_304089_+	membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZS02730.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZS02731.1|306059_307010_-|integrase	integrase	integrase	NA	NA	NA	NA
308358:308374	attR	GCTGGTGCGCCAGAGCG	NA	NA	NA	NA
>prophage 5
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	596203	660666	4106512	integrase,tRNA,transposase	Pandoravirus(16.67%)	51	629687:629716	667322:667351
AZS02977.1|596203_597193_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS02978.1|597432_597681_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02979.1|597717_598851_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02980.1|598949_599900_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS02981.1|601122_602025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02982.1|602026_602881_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZS02983.1|602927_604037_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZS02984.1|604047_604566_-	flavin reductase	NA	NA	NA	NA	NA
AZS02985.1|604595_605228_-	pyridoxine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZS02986.1|605299_605959_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZS02987.1|605955_607095_-	MFS transporter	NA	NA	NA	NA	NA
AZS02988.1|607444_608317_+	heme biosynthesis protein HemY	NA	NA	NA	NA	NA
AZS02989.1|608472_609210_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS02990.1|609212_610844_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZS05886.1|610939_611929_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS02991.1|611925_612636_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS02992.1|612731_613748_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS02993.1|614019_614646_-	aminobenzoate synthetase	NA	NA	NA	NA	NA
AZS02994.1|614701_615829_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZS02995.1|615834_621552_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZS02996.1|621880_622051_+	hypothetical protein	NA	NA	NA	NA	NA
AZS02997.1|622119_623064_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZS02998.1|623252_624188_+	glycosyl transferase	NA	NA	NA	NA	NA
AZS02999.1|624305_625877_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03000.1|625956_627165_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS05887.1|627713_628580_+	multidrug DMT transporter	NA	NA	NA	NA	NA
629687:629716	attL	GGCATCATCGGCCCCAACGGCGCGGGCAAG	NA	NA	NA	NA
AZS03001.1|630940_631162_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AZS03002.1|631492_632509_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS03003.1|632593_632845_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AZS03004.1|632848_633664_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZS03005.1|633776_634655_-	septum formation inhibitor	NA	NA	NA	NA	NA
AZS03006.1|634766_636530_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZS03007.1|636645_637986_+	transmembrane cytochrome oxidase	NA	NA	NA	NA	NA
AZS03008.1|639055_640480_-	ATPase	NA	NA	NA	NA	NA
AZS03009.1|640479_641181_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZS03010.1|642733_643636_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05888.1|643731_644703_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03011.1|644707_645388_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03012.1|645525_645918_+	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AZS03013.1|646025_647042_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS03014.1|647281_648067_-	enoyl-ACP reductase	NA	NA	NA	NA	NA
AZS03015.1|648161_649571_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZS03016.1|649581_650382_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZS03017.1|650402_651173_+	methyltransferase type 11	NA	NA	NA	NA	NA
AZS03018.1|651215_651683_+	ribonuclease H	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZS03019.1|651679_652630_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03020.1|652711_654232_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03021.1|654210_654543_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03022.1|654578_655457_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZS03023.1|656383_659362_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03024.1|659763_660666_+|integrase	integrase	integrase	NA	NA	NA	NA
667322:667351	attR	GGCATCATCGGCCCCAACGGCGCGGGCAAG	NA	NA	NA	NA
>prophage 6
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	695475	772784	4106512	integrase,protease,tRNA	Bacillus_phage(20.0%)	59	771737:771796	777160:777255
AZS03056.1|695475_696426_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03057.1|696524_698000_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZS03058.1|699587_700475_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZS03059.1|700477_701419_-	peptide ABC transporter	NA	NA	NA	NA	NA
AZS03060.1|701464_703030_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03061.1|703317_704532_-	methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS03062.1|704807_706133_-	omega amino acid--pyruvate aminotransferase	NA	NA	NA	NA	NA
AZS03063.1|706315_707773_+	GntR family transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZS03064.1|707736_708234_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
AZS03065.1|708264_709236_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZS05889.1|709288_709720_-	peroxiredoxin	NA	NA	NA	NA	NA
AZS03066.1|709849_710518_+	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
AZS03067.1|711246_712350_+	glycosyl transferase	NA	NA	NA	NA	NA
AZS03068.1|712455_713730_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AZS03069.1|713741_714767_+	Vi polysaccharide biosynthesis protein VipB/TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZS03070.1|714768_716139_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03071.1|716139_717276_+	glycosyl transferase	NA	NA	NA	NA	NA
AZS03072.1|717322_719248_+	asparagine synthetase B	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZS03073.1|719244_720366_+	glycosyl transferase	NA	NA	NA	NA	NA
AZS03074.1|720362_721517_+	glycosyl transferase	NA	NA	NA	NA	NA
AZS03075.1|721513_722644_+	glycosyl transferase family 1	NA	NA	NA	NA	NA
AZS03076.1|722651_724217_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZS03077.1|724223_725606_-	phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZS03078.1|725884_726496_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03079.1|726587_728003_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AZS03080.1|728020_728731_+	two-component system response regulator	NA	NA	NA	NA	NA
AZS03081.1|728727_730050_+	histidine kinase	NA	NA	NA	NA	NA
AZS05890.1|730195_732091_+	sulfatase	NA	NA	NA	NA	NA
AZS03082.1|732216_733530_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZS03083.1|733638_734937_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZS03084.1|735119_736028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03085.1|736037_736247_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03086.1|736258_737938_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZS03087.1|738039_738993_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZS03088.1|739083_739911_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZS03089.1|739909_741796_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03090.1|741792_742392_+	lipoprotein localization factor LolB	NA	NA	NA	NA	NA
AZS03091.1|742440_743340_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AZS03092.1|743548_744499_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
AZS03093.1|744621_745236_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
AZS03094.1|745364_745961_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZS03095.1|745957_746740_+|protease	CAAX protease	protease	NA	NA	NA	NA
AZS03096.1|746812_747904_+	GTP-binding protein	NA	NA	NA	NA	NA
AZS03097.1|748183_749311_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZS03098.1|749652_750699_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
AZS05891.1|751209_753966_+	restriction endonuclease	NA	NA	NA	NA	NA
AZS03099.1|753967_756919_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZS03100.1|756934_758146_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZS03101.1|758377_759280_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03102.1|759794_760052_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03103.1|760280_760526_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03104.1|760595_761507_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03105.1|761588_761873_+	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZS03106.1|761951_762422_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03107.1|762656_763607_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03108.1|764025_766590_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS03109.1|766634_768488_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03110.1|768820_770392_+	transcriptional regulator	NA	NA	NA	NA	NA
771737:771796	attL	TGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACTGGAAA	NA	NA	NA	NA
AZS03111.1|771833_772784_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03111.1|771833_772784_+|integrase	integrase	integrase	NA	NA	NA	NA
777160:777255	attR	TTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACACCTAGTCGGCGCGGCGAGCCGGCGGCCCTGGTCGAT	NA	NA	NA	NA
>prophage 8
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1027073	1084737	4106512	integrase	Bacillus_virus(25.0%)	53	1036224:1036249	1088114:1088139
AZS03312.1|1027073_1028024_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03313.1|1028126_1028789_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03314.1|1028891_1029302_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03315.1|1029406_1030408_+	amidase	NA	NA	NA	NA	NA
AZS03316.1|1030410_1031607_+	CoA-transferase	NA	NA	NA	NA	NA
AZS03317.1|1031627_1032431_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS03318.1|1032511_1032808_+	histidine kinase	NA	NA	NA	NA	NA
AZS03319.1|1032838_1033402_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05910.1|1033442_1034300_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS03320.1|1034307_1035057_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZS03321.1|1035078_1035951_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03322.1|1035979_1036759_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
1036224:1036249	attL	TCGATATCCTGGTCAACAACGCCGGC	NA	NA	NA	NA
AZS03323.1|1036792_1037590_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03324.1|1040244_1040637_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03325.1|1040630_1041491_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS03326.1|1041494_1042457_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS03327.1|1043224_1043923_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	3.8e-12
AZS03328.1|1044783_1045734_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03329.1|1045797_1046073_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03330.1|1046083_1046953_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03331.1|1047023_1047719_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03332.1|1047708_1048218_+	dCMP deaminase	NA	NA	NA	NA	NA
AZS03333.1|1048214_1049435_+	MFS transporter	NA	NA	NA	NA	NA
AZS03334.1|1049382_1050285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03335.1|1052496_1053870_+	amidase	NA	NA	NA	NA	NA
AZS03336.1|1053908_1054610_-	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
AZS03337.1|1054908_1055898_+	MFS transporter	NA	NA	NA	NA	NA
AZS03338.1|1055998_1056460_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS03339.1|1056475_1057024_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZS03340.1|1057165_1058641_-	acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZS03341.1|1058746_1059838_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03342.1|1059841_1060624_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS03343.1|1060633_1061422_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZS03344.1|1062547_1062982_-	thioesterase	NA	NA	NA	NA	NA
AZS03345.1|1062978_1063989_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZS03346.1|1064032_1064959_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03347.1|1065245_1065614_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03348.1|1065878_1066781_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03349.1|1066825_1069252_+	ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
AZS03350.1|1069300_1069993_+	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZS03351.1|1070065_1071265_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AZS03352.1|1071282_1072188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03353.1|1072303_1073233_+	acetylxylan esterase	NA	NA	NA	NA	NA
AZS05911.1|1073258_1074605_+	MFS transporter	NA	NA	NA	NA	NA
AZS03354.1|1074617_1075382_+	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
AZS03355.1|1075395_1076178_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03356.1|1076370_1077321_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03357.1|1077382_1078492_-	porin	NA	NA	NA	NA	NA
AZS03358.1|1079004_1079841_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZS03359.1|1079967_1080876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03360.1|1080872_1081823_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03361.1|1082208_1082751_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03362.1|1083834_1084737_+|integrase	integrase	integrase	NA	NA	NA	NA
1088114:1088139	attR	GCCGGCGTTGTTGACCAGGATATCGA	NA	NA	NA	NA
>prophage 9
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1089267	1151398	4106512	integrase	Bacillus_virus(16.67%)	58	1107060:1107119	1155947:1157004
AZS03366.1|1089267_1090170_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03367.1|1090166_1092275_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03368.1|1092419_1093031_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA	NA
AZS05913.1|1093110_1093575_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03369.1|1093850_1094036_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03370.1|1094087_1094840_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS03371.1|1094846_1096109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03372.1|1098466_1099594_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZS03373.1|1099604_1100432_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZS03374.1|1100418_1101285_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS03375.1|1101281_1102190_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03376.1|1102196_1102655_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03377.1|1102651_1103056_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05914.1|1103418_1104330_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03378.1|1104344_1105055_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03379.1|1105051_1106296_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03380.1|1106297_1106732_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03381.1|1106760_1107066_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
1107060:1107119	attL	CAGCTAGATGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAA	NA	NA	NA	NA
AZS03382.1|1107164_1108115_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03383.1|1108171_1109320_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZS03384.1|1109400_1110303_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03385.1|1110882_1111680_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03386.1|1111727_1112381_-	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AZS03387.1|1112337_1113426_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZS03388.1|1113590_1115816_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZS03389.1|1118093_1118990_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZS03390.1|1119158_1120061_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03391.1|1120057_1121749_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZS03392.1|1121810_1123007_+	amidohydrolase	NA	NA	NA	NA	NA
AZS03393.1|1123020_1123899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03394.1|1124005_1125052_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03395.1|1125115_1125526_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZS03396.1|1125536_1127009_+	magnesium transporter	NA	NA	NA	NA	NA
AZS03397.1|1127204_1128068_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03398.1|1128151_1129303_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AZS03399.1|1129450_1130461_-	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AZS03400.1|1130631_1131597_-	MFS transporter	NA	NA	NA	NA	NA
AZS03401.1|1131771_1132602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03402.1|1132688_1132955_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AZS03403.1|1132959_1133871_+	geranyl transferase	NA	NA	NA	NA	NA
AZS03404.1|1133920_1135783_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AZS03405.1|1135939_1136737_+	GTP cyclohydrolase FolE2	NA	NA	NA	NA	NA
AZS03406.1|1136956_1137337_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AZS03407.1|1137384_1137708_+	primosomal replication protein N	NA	NA	NA	NA	NA
AZS03408.1|1137800_1138073_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
AZS03409.1|1138088_1138544_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
AZS03410.1|1138660_1139497_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03411.1|1139493_1140867_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AZS03412.1|1140887_1141856_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
AZS03413.1|1141935_1142913_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZS03414.1|1143017_1144697_-	phosphate starvation-inducible protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AZS03415.1|1144776_1145241_-	alkyl hydroperoxide reductase	NA	NA	NA	NA	NA
AZS03416.1|1145243_1145696_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03417.1|1145912_1147100_+	glutamate-pyruvate aminotransferase	NA	NA	NA	NA	NA
AZS03418.1|1147096_1148401_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
AZS03419.1|1148397_1149804_+	threonine synthase	NA	NA	NA	NA	NA
AZS03420.1|1150017_1150239_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03421.1|1150447_1151398_+|integrase	integrase	integrase	NA	NA	NA	NA
1155947:1157004	attR	TTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACATCTAGCTGGTGCACGTCCCGTACAAGGGCGGGGCCGCCGCCATTACCGATACGATAGGCGGGCGCGTGTCGGTGCTGTTCCTGAACCAGGACAACCTGCTGCCGCAGGTGCAGGGCGGCAAGGTGCGGGCGCTGGCGGTGGCCAGCGTCAAGCGCAACCCGGCCTACCCGGATACGCCCACCATTGCCGAGTCGGGCTATCCGGGTTTCGCCGCCGAATCGTGGTTCGGCCTGTCGGCGCCTGCCGGCACGCCCGCCCCGGTCATCGATCGGCTGAGCCAGGCCACCGTGCGCGCGCTGGCCGCGCCGCAATTGCGCGACAAGCTGCAGGCGGTGGGGTTCGTGGTCGTGGGCAATGACCCCAAGGCGTTCGACGCCTTTGTCGCCGCCGAAATCGACAAATGGGGCAAGGCGGCCCAGGCCTCCGGCGCCCGCATGGATTGACCCGGCAACCACGGCCGGCGCCAGGCGCCGGCCCTCATCCACCTCGGGGAATGACGACGATGAATTCACCGCTGCCCAACCGGTTTCGCCAGCGCATCCTGGCGCGCGAGCAACTGATCGGCTACTGGCTGAGCCTGGCCAGCCACATTACCGCCGAAGTGGCCGGAATGGCCGATTTCGACTGGCTGCTGCTCGATGCCGAGCACTCGCCCAACGATGTGCCGCTGTTGCTGCAGCAGTTGCAGGCGCTGCAGGGCAGCGCCAGCGCCGCCGTGGGGCGGCCTTCCTGGAACGATCCGGTCGAGATCAAGCGCATGCTCGATATCGGCTTCTACAACCTGCTGATTCCGTTCATCGATTCGGCCGACGATGCGCGCCGGGCGGTGGCGGCCATGCGCTATCCGCCGCAGGGCATGCGCGGCGTGTCGGTGGCGCAGCGCAGCAACCGCTACGGGACGGTGACCGACTACCTGCGGACCATCAACGACAACATCTGCGTGCTGCTGCAAATCGAAAGCCGCCCGGGCGTCGAGGCGGTCGACGAGATCGCCGCGGTCGACGGG	NA	NA	NA	NA
>prophage 10
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1154950	1221417	4106512	integrase,protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	1206180:1206239	1217300:1217449
AZS03423.1|1154950_1155901_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03424.1|1156491_1157268_+	5-keto-4-deoxy-D-glucarate aldolase	NA	NA	NA	NA	NA
AZS03425.1|1157385_1157649_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZS03426.1|1157749_1158754_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AZS03427.1|1158954_1160556_-	murein biosynthesis protein MurJ	NA	NA	NA	NA	NA
AZS03428.1|1160581_1161340_-	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS03429.1|1161431_1162088_-	adenylate kinase	NA	NA	NA	NA	NA
AZS03430.1|1162178_1162943_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZS03431.1|1162952_1163141_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03432.1|1163196_1164240_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZS03433.1|1164236_1164650_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZS03434.1|1164646_1165267_-	flagellar motor protein MotA	NA	NA	NA	NA	NA
AZS03435.1|1165547_1166498_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03436.1|1166665_1168057_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZS03437.1|1168129_1168708_+	superoxide dismutase	NA	NA	NA	NA	NA
AZS03438.1|1168824_1170222_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZS03439.1|1170337_1171543_+	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
AZS03440.1|1171642_1172134_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	4.8e-14
AZS03441.1|1172255_1172501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZS03442.1|1172728_1173043_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZS05916.1|1173756_1178322_+	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AZS05915.1|1178318_1180487_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZS03443.1|1180542_1182858_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AZS03444.1|1182862_1184182_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AZS03445.1|1184200_1185874_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AZS03446.1|1185878_1186547_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03447.1|1186703_1190525_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS03448.1|1190903_1191806_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03449.1|1191827_1192973_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03450.1|1193121_1194051_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS03451.1|1194047_1195136_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZS03452.1|1195132_1195936_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZS03453.1|1195932_1196664_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZS03454.1|1196721_1198011_-	MFS transporter	NA	NA	NA	NA	NA
AZS03455.1|1198107_1198710_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03456.1|1198972_1199677_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03457.1|1199654_1201934_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS03458.1|1203262_1203601_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS03459.1|1204308_1204575_+	hypothetical protein	NA	NA	NA	NA	NA
1206180:1206239	attL	CTAGCTGTGAAGATTCAATAGGTTGTATGCATGGTTCATCCGAACCGGATTTGAGAAACT	NA	NA	NA	NA
AZS03460.1|1206329_1207232_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03461.1|1207228_1208560_-	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AZS03462.1|1209820_1211821_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZS03463.1|1211813_1212455_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZS03464.1|1212451_1212859_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZS03465.1|1212855_1213656_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03466.1|1213730_1214435_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS03467.1|1214466_1215261_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZS03468.1|1215257_1216208_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03469.1|1216306_1217209_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03470.1|1217355_1217790_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
1217300:1217449	attR	AGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACAGCTAGCCGAGGTGGGTGTGGCGCTCGGGACGCTCTTCGACCTGCATCTCGCTCAGGCCGTGCAGGATGCCGCAGTCCTCGGCGTCCGGGCGGGCC	NA	NA	NA	NA
AZS03471.1|1217872_1220209_+	ATPase P	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZS03472.1|1220400_1221417_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1321685	1378848	4106512	integrase	Klosneuvirus(16.67%)	52	1335432:1335448	1383172:1383188
AZS03547.1|1321685_1322588_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03548.1|1322773_1323043_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03549.1|1323281_1323920_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03550.1|1324169_1324706_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03551.1|1324724_1326338_+	autotransporter	NA	NA	NA	NA	NA
AZS03552.1|1326334_1326946_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03553.1|1327168_1328629_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZS03554.1|1328725_1330318_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZS03555.1|1330671_1330929_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZS03556.1|1330930_1332271_+	toxin HipA	NA	NA	NA	NA	NA
AZS03557.1|1332366_1333056_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03558.1|1333068_1334499_+	MFS transporter	NA	NA	NA	NA	NA
1335432:1335448	attL	ACGCTGGCCGGCACGCT	NA	NA	NA	NA
AZS03559.1|1336223_1337045_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS03560.1|1337055_1338627_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03561.1|1338655_1339633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03562.1|1339659_1340463_+	nitrate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZS03563.1|1340459_1341254_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS03564.1|1341261_1342497_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05926.1|1342510_1342924_+	aconitase subunit 2	NA	NA	NA	NA	NA
AZS03565.1|1343673_1344624_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03566.1|1344603_1345185_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03567.1|1345245_1346973_-	transporter	NA	NA	NA	NA	NA
AZS03568.1|1347084_1348443_+	mRNA 3'-end processing factor	NA	NA	NA	NA	NA
AZS03569.1|1348735_1349686_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03570.1|1349726_1350797_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03571.1|1350819_1351698_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03572.1|1351869_1352841_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS03573.1|1353003_1353846_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03574.1|1354007_1354688_+	anti-sigma factor	NA	NA	NA	NA	NA
AZS03575.1|1354681_1355851_+	amine oxidase	NA	NA	NA	NA	NA
AZS03576.1|1355847_1356879_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZS03577.1|1356946_1358164_+	MFS transporter	NA	NA	NA	NA	NA
AZS03578.1|1358198_1359731_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03579.1|1359811_1360435_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS03580.1|1360465_1361077_+	RhtB family transporter	NA	NA	NA	NA	NA
AZS03581.1|1361112_1361583_+	histidine kinase	NA	NA	NA	NA	NA
AZS03582.1|1362014_1363019_+	peptidase M20	NA	NA	NA	NA	NA
AZS03583.1|1363055_1364570_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03584.1|1364573_1365533_+	ABC transporter	NA	NA	NA	NA	NA
AZS03585.1|1365561_1366365_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZS03586.1|1366366_1368001_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZS03587.1|1368084_1369146_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZS03588.1|1369617_1370142_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZS03589.1|1370605_1371508_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03590.1|1371504_1372539_-	hydrolase	NA	NA	NA	NA	NA
AZS03591.1|1372647_1373286_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03592.1|1373580_1373808_+	GCN5 family acetyltransferase	NA	NA	NA	NA	NA
AZS03593.1|1373930_1374644_+	methyltransferase type 11	NA	NA	NA	NA	NA
AZS03594.1|1374888_1375839_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03595.1|1375978_1376224_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03596.1|1376338_1377787_-	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AZS03597.1|1377897_1378848_+|integrase	integrase	integrase	NA	NA	NA	NA
1383172:1383188	attR	AGCGTGCCGGCCAGCGT	NA	NA	NA	NA
>prophage 12
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1434338	1489647	4106512	integrase,protease	Enterococcus_phage(16.67%)	49	1483538:1483554	1490156:1490172
AZS03649.1|1434338_1435289_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03650.1|1435291_1436245_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03651.1|1436272_1437124_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
AZS03652.1|1437129_1438158_-	lactate dehydrogenase	NA	NA	NA	NA	NA
AZS03653.1|1438154_1439198_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03654.1|1439265_1440291_-	peptidase M19	NA	NA	NA	NA	NA
AZS03655.1|1440572_1441826_+	sarcosine oxidase subunit beta	NA	NA	NA	NA	NA
AZS03656.1|1441836_1442109_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
AZS03657.1|1442105_1445045_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZS03658.1|1445052_1445652_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
AZS03659.1|1445652_1446501_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZS03660.1|1446538_1447525_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03661.1|1447540_1448977_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03662.1|1448989_1449781_+	hydrolase	NA	NA	NA	NA	NA
AZS03663.1|1450099_1451155_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
AZS03664.1|1451191_1452001_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
AZS03665.1|1452001_1452550_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05931.1|1452700_1453120_+	Fur family transcriptional regulator	NA	NA	NA	NA	NA
AZS03666.1|1453194_1454856_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AZS03667.1|1454871_1455771_-	NAD(+) kinase	NA	NA	NA	NA	NA
AZS03668.1|1455885_1456890_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
AZS03669.1|1456947_1458036_+	ferrochelatase	NA	NA	NA	NA	NA
AZS05932.1|1458117_1458360_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03670.1|1458501_1459056_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
AZS03671.1|1459063_1459444_+	thioredoxin	NA	NA	NA	NA	NA
AZS03672.1|1459534_1461460_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
AZS03673.1|1461560_1462694_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
AZS03674.1|1462862_1465613_-|protease	zinc protease	protease	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
AZS03675.1|1465945_1466320_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03676.1|1466357_1466900_+	acetyltransferase	NA	NA	NA	NA	NA
AZS03677.1|1466903_1468076_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05933.1|1468097_1468985_-	ATP-binding protein	NA	NA	NA	NA	NA
AZS03678.1|1469077_1470028_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03679.1|1470194_1470548_+	cytochrome C	NA	NA	NA	NA	NA
AZS03680.1|1470560_1470923_+	cytochrome	NA	NA	NA	NA	NA
AZS03681.1|1470964_1471390_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03682.1|1471592_1472849_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZS03683.1|1473047_1474028_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03684.1|1474177_1475419_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03685.1|1475517_1476468_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03686.1|1476476_1477172_-	two-component system response regulator	NA	NA	NA	NA	NA
AZS03687.1|1477213_1479928_-	histidine kinase	NA	NA	NA	NA	NA
AZS03688.1|1479993_1480593_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA	NA
AZS03689.1|1480603_1482769_-	potassium-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZS03690.1|1482792_1484577_-	ATPase	NA	NA	NA	NA	NA
1483538:1483554	attL	GCTTCGGCCTGGCGCAG	NA	NA	NA	NA
AZS03691.1|1485360_1485633_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03692.1|1485632_1487699_+	cation acetate symporter	NA	NA	NA	NA	NA
AZS03693.1|1487695_1488598_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03694.1|1488744_1489647_-|integrase	integrase	integrase	NA	NA	NA	NA
1490156:1490172	attR	GCTTCGGCCTGGCGCAG	NA	NA	NA	NA
>prophage 13
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1565155	1633194	4106512	integrase,tRNA	Streptococcus_virus(11.11%)	59	1572587:1572605	1635483:1635501
AZS05934.1|1565155_1565644_+|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AZS03770.1|1565761_1566340_+	glutamine amidotransferase	NA	NA	NA	NA	NA
AZS03771.1|1566445_1566814_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZS03772.1|1566960_1567863_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03773.1|1567869_1568982_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AZS03774.1|1569668_1570871_+	MFS transporter	NA	NA	NA	NA	NA
AZS03775.1|1571074_1573735_+	hypothetical protein	NA	NA	NA	NA	NA
1572587:1572605	attL	CTGCTGCCGCTGGCCGTGC	NA	NA	NA	NA
AZS03776.1|1573747_1577152_+	nuclease	NA	NA	NA	NA	NA
AZS05935.1|1577954_1580045_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.1e-43
AZS03777.1|1580091_1580418_+	nucleoid-associated protein	NA	NA	NA	NA	NA
AZS03778.1|1580468_1581077_+	recombination protein RecR	NA	NA	NA	NA	NA
AZS03779.1|1581175_1582126_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03780.1|1582195_1582960_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05936.1|1582956_1583493_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03781.1|1583659_1584511_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZS03782.1|1584570_1585197_+	translation factor Sua5	NA	NA	NA	NA	NA
AZS03783.1|1585193_1586096_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03784.1|1586242_1587355_-	Tat pathway signal protein	NA	NA	NA	NA	NA
AZS03785.1|1587344_1588346_-	aminopeptidase	NA	NA	NA	NA	NA
AZS03786.1|1588451_1589963_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZS03787.1|1589959_1591264_-	peptidase	NA	NA	NA	NA	NA
AZS05937.1|1591375_1591933_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZS03788.1|1592203_1592758_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZS03789.1|1593213_1593429_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05938.1|1593683_1596281_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZS03790.1|1596277_1597465_+	cupin	NA	NA	NA	NA	NA
AZS03791.1|1598124_1598739_+	fimbrial protein	NA	NA	NA	NA	NA
AZS03792.1|1598827_1599949_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03793.1|1599966_1600872_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZS03794.1|1601812_1602715_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03795.1|1602896_1603649_+	glutamine ABC transporter substrate-bindnig protein	NA	NA	NA	NA	NA
AZS03796.1|1603717_1604377_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
AZS03797.1|1604373_1605102_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZS03798.1|1605114_1607394_-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZS03799.1|1607418_1607622_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZS05939.1|1607663_1608269_-	guanylate kinase	NA	U5J9X2	Bacillus_phage	29.6	2.0e-09
AZS03800.1|1608431_1609349_-	cytochrome C	NA	NA	NA	NA	NA
AZS03801.1|1609345_1610059_-	cytochrome C	NA	NA	NA	NA	NA
AZS03802.1|1610296_1611067_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS03803.1|1611071_1611671_-	NlpC/P60 family protein 2	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZS03804.1|1611915_1613406_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZS03805.1|1613464_1613749_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS03806.1|1613745_1613874_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03807.1|1613886_1614042_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03808.1|1614314_1615241_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03809.1|1615377_1616118_+	ribonuclease PH	NA	NA	NA	NA	NA
AZS03810.1|1616284_1617661_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AZS03811.1|1617842_1618748_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03812.1|1620399_1622202_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZS03813.1|1622328_1622970_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AZS03814.1|1623068_1624019_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03815.1|1624040_1625261_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AZS03816.1|1625446_1626859_+	glutamine synthetase	NA	NA	NA	NA	NA
AZS03817.1|1626922_1627990_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZS03818.1|1627989_1629477_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZS05940.1|1629486_1630431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03819.1|1630590_1631289_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AZS03820.1|1631366_1632272_+	pirin	NA	NA	NA	NA	NA
AZS03821.1|1632291_1633194_-|integrase	integrase	integrase	NA	NA	NA	NA
1635483:1635501	attR	GCACGGCCAGCGGCAGCAG	NA	NA	NA	NA
>prophage 14
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1669191	1724782	4106512	integrase	Brazilian_cedratvirus(25.0%)	50	1681676:1681693	1725266:1725283
AZS03844.1|1669191_1670142_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03845.1|1670200_1670974_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03846.1|1670966_1672523_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZS03847.1|1672519_1673470_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03848.1|1674796_1675399_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03849.1|1675638_1676340_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZS03850.1|1676333_1677116_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZS03851.1|1677300_1678251_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03852.1|1678349_1679087_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZS03853.1|1679276_1680035_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03854.1|1680081_1681071_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03855.1|1681248_1682217_-	phenol degradation protein meta	NA	NA	NA	NA	NA
1681676:1681693	attL	TTGGCCAGCGCGTCGGCG	NA	NA	NA	NA
AZS03856.1|1683756_1684725_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS03857.1|1684733_1685675_+	MoxR protein	NA	NA	NA	NA	NA
AZS05944.1|1686148_1687159_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05946.1|1687149_1688664_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03858.1|1688660_1690007_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05945.1|1690009_1691044_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZS03859.1|1691093_1692719_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZS03860.1|1692812_1693292_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03861.1|1693271_1694174_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03862.1|1694326_1695274_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05947.1|1695327_1697142_-	histidine kinase	NA	NA	NA	NA	NA
AZS03863.1|1697134_1697809_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03864.1|1697938_1701013_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS03865.1|1701026_1701326_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS05948.1|1701640_1702264_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZS03866.1|1702507_1703377_+	2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA	NA
AZS03867.1|1703354_1704167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03868.1|1704384_1705311_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03869.1|1705423_1706203_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03870.1|1706193_1707390_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AZS03871.1|1707420_1708371_-	hydrolase	NA	NA	NA	NA	NA
AZS03872.1|1708592_1709282_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03873.1|1709346_1710102_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS03874.1|1710153_1711146_+	MFS transporter	NA	NA	NA	NA	NA
AZS03875.1|1711155_1712109_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03876.1|1712224_1713187_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03877.1|1714588_1715017_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03878.1|1715013_1715964_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03879.1|1716069_1716261_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05949.1|1716257_1716980_-	NADPH-dependent FMN reductase	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZS03880.1|1717418_1718606_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05950.1|1718609_1718960_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03881.1|1719193_1720606_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03882.1|1720709_1721681_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03883.1|1721694_1722408_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS03884.1|1722412_1723330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03885.1|1723436_1723733_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03886.1|1723831_1724782_+|integrase	integrase	integrase	NA	NA	NA	NA
1725266:1725283	attR	TTGGCCAGCGCGTCGGCG	NA	NA	NA	NA
>prophage 15
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1746488	1838412	4106512	integrase,tRNA,transposase	Brevibacillus_phage(14.29%)	60	1810250:1810273	1841594:1841617
AZS03905.1|1746488_1747391_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03906.1|1747489_1748440_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03907.1|1748463_1748928_-|tRNA	glutamyl-tRNA amidotransferase	tRNA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZS03908.1|1749074_1750283_+	nitric oxide dioxygenase	NA	NA	NA	NA	NA
AZS03909.1|1750326_1750764_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
AZS03910.1|1750882_1752172_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZS03911.1|1754912_1755815_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03912.1|1755961_1756978_-	glycine cleavage system protein T	NA	NA	NA	NA	NA
AZS03913.1|1757156_1758191_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AZS03914.1|1758187_1758814_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZS03915.1|1758810_1759863_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZS03916.1|1759912_1760683_+	DNAase	NA	NA	NA	NA	NA
AZS03917.1|1760733_1761570_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03918.1|1761765_1762506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03919.1|1762580_1763324_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03920.1|1763985_1764759_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZS03921.1|1765896_1767186_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
AZS03922.1|1768796_1770044_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
AZS03923.1|1770053_1771763_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZS03924.1|1771759_1772698_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AZS03925.1|1772694_1773978_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZS03926.1|1773981_1774464_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS03927.1|1774464_1775451_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03928.1|1775623_1776343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03929.1|1776459_1777410_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS03930.1|1780595_1781945_+	amidase	NA	NA	NA	NA	NA
AZS03931.1|1782002_1782797_+	hypothetical protein	NA	NA	NA	NA	NA
AZS03932.1|1782930_1783806_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZS03933.1|1783849_1787566_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AZS03934.1|1787574_1788204_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03935.1|1799479_1799917_+	protein fimA	NA	NA	NA	NA	NA
AZS03936.1|1800076_1800901_+	molecular chaperone	NA	NA	NA	NA	NA
AZS03937.1|1800963_1803585_+	usher protein	NA	NA	NA	NA	NA
AZS03938.1|1803565_1804696_+	protein fhaE	NA	NA	NA	NA	NA
AZS03939.1|1804688_1806443_+	filamentous hemagglutinin	NA	NA	NA	NA	NA
AZS03940.1|1807760_1808261_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05952.1|1808267_1809242_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1810250:1810273	attL	CAGCAGGCCGGGCAGGATGCCGGC	NA	NA	NA	NA
AZS03941.1|1810798_1811290_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03942.1|1811303_1812269_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS03943.1|1812289_1812991_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03944.1|1814165_1814678_+	transcriptional regulator	NA	NA	NA	NA	NA
AZS03945.1|1814756_1818380_+	5-oxoprolinase	NA	NA	NA	NA	NA
AZS03946.1|1818393_1819425_-	peptidase C45	NA	NA	NA	NA	NA
AZS03947.1|1820584_1821418_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZS03948.1|1821431_1822190_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS03949.1|1822351_1823344_+	MFS transporter	NA	NA	NA	NA	NA
AZS03950.1|1823561_1824305_-	RNA methyltransferase	NA	NA	NA	NA	NA
AZS03951.1|1824445_1825228_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZS03952.1|1825354_1826941_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
AZS03953.1|1826965_1827829_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AZS03954.1|1828036_1828813_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
AZS05953.1|1828805_1829315_-	cyclophilin	NA	NA	NA	NA	NA
AZS03955.1|1829443_1830127_-	hypothetical protein	NA	NA	NA	NA	NA
AZS03956.1|1830366_1831827_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
AZS03957.1|1831846_1832491_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
AZS03958.1|1832527_1833493_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AZS03959.1|1833591_1834542_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS03960.1|1834602_1835637_+|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
AZS03961.1|1835736_1837002_+	aspartate kinase	NA	NA	NA	NA	NA
AZS03962.1|1837395_1838412_-|transposase	transposase	transposase	NA	NA	NA	NA
1841594:1841617	attR	GCCGGCATCCTGCCCGGCCTGCTG	NA	NA	NA	NA
>prophage 16
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	1958597	2028249	4106512	integrase,tRNA	Staphylococcus_phage(16.67%)	58	2006573:2006598	2033396:2033421
AZS04058.1|1958597_1961255_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZS05962.1|1961332_1962490_-	transporter	NA	NA	NA	NA	NA
AZS04059.1|1962531_1963044_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04060.1|1963166_1963604_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS04061.1|1963928_1964831_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04062.1|1964977_1965880_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04063.1|1966133_1967939_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
AZS04064.1|1968052_1968220_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZS04065.1|1968283_1968520_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZS05963.1|1968888_1970040_-	transporter	NA	NA	NA	NA	NA
AZS04066.1|1971603_1972554_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04067.1|1973005_1974007_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04068.1|1974179_1975037_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS04069.1|1975033_1976296_+	glycine/betaine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZS04070.1|1976396_1976771_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZS04071.1|1976843_1978031_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS04072.1|1978115_1978886_+	spermidine synthase	NA	NA	NA	NA	NA
AZS04073.1|1978999_1979764_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04074.1|1979714_1981016_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZS04075.1|1981012_1981819_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS04076.1|1983563_1984535_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04077.1|1984691_1985204_+	superoxide dismutase	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZS04078.1|1985362_1986337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04079.1|1987337_1988132_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZS05964.1|1988157_1988964_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZS04080.1|1989074_1989665_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04081.1|1989675_1990854_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04082.1|1990956_1991331_+	DNA-binding protein	NA	NA	NA	NA	NA
AZS04083.1|1991583_1992915_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZS04084.1|1992981_1996212_+	acriflavine resistance protein B	NA	NA	NA	NA	NA
AZS04085.1|1997702_1998449_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZS04086.1|1998533_1998995_+	ACP synthase	NA	NA	NA	NA	NA
AZS04087.1|1999032_2000091_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZS04088.1|2000053_2001883_+	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AZS04089.1|2001922_2002495_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZS04090.1|2002664_2003633_+	MFS transporter	NA	NA	NA	NA	NA
AZS04091.1|2003642_2003984_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04092.1|2003919_2004741_-	preQ(1) synthase	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
AZS04093.1|2005059_2006382_+	isocitrate lyase	NA	NA	NA	NA	NA
2006573:2006598	attL	GTGCCTGTCCCCGCCGGGACAGGCAC	NA	NA	NA	NA
AZS04094.1|2006741_2007377_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04095.1|2007336_2008239_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04096.1|2009157_2010030_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS04097.1|2010107_2011247_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04098.1|2011605_2012862_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZS04099.1|2012867_2013395_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZS04100.1|2013399_2014218_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS04101.1|2014217_2014940_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS04102.1|2014961_2015276_+	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AZS04103.1|2015293_2016442_+	carnitine dehydratase	NA	NA	NA	NA	NA
AZS04104.1|2016472_2017348_-	esterase	NA	NA	NA	NA	NA
AZS04105.1|2017344_2018664_-	acyl--CoA ligase	NA	NA	NA	NA	NA
AZS04106.1|2018736_2019933_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS04107.1|2019943_2021431_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04108.1|2021671_2023498_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04109.1|2024025_2024925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04110.1|2025062_2026028_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04111.1|2026126_2027077_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04112.1|2027298_2028249_+|integrase	integrase	integrase	NA	NA	NA	NA
2033396:2033421	attR	GTGCCTGTCCCGGCGGGGACAGGCAC	NA	NA	NA	NA
>prophage 17
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2039745	2082172	4106512	integrase,transposase	Erysipelothrix_phage(20.0%)	41	2073872:2073889	2083502:2083519
AZS04126.1|2039745_2040696_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04127.1|2040682_2041687_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04128.1|2041833_2042130_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04129.1|2042304_2043657_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZS04130.1|2043799_2044816_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS05965.1|2046795_2047809_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZS04131.1|2047895_2048801_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04132.1|2048957_2049302_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04133.1|2049459_2049918_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZS04134.1|2049931_2052148_+	aldehyde oxidase	NA	NA	NA	NA	NA
AZS04135.1|2052144_2053206_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04136.1|2053234_2054209_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS04137.1|2054160_2054979_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZS04138.1|2054991_2055600_-	peptidase S16	NA	NA	NA	NA	NA
AZS04139.1|2055774_2056170_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04140.1|2056188_2057628_+	disulfide bond formation protein DsbA	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZS04141.1|2057656_2058004_+	aldehyde-activating protein	NA	NA	NA	NA	NA
AZS04142.1|2058022_2058925_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05966.1|2059047_2059527_+	acetyltransferase	NA	NA	NA	NA	NA
AZS04143.1|2059625_2060576_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04144.1|2060659_2062477_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZS04145.1|2062550_2063198_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04146.1|2063210_2064140_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04147.1|2064309_2064774_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04148.1|2065021_2065702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04149.1|2065750_2067442_+	sulfate transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZS04150.1|2067457_2068009_-	ATPase	NA	NA	NA	NA	NA
AZS04151.1|2068005_2068377_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04152.1|2068489_2069326_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS04153.1|2069336_2069816_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04154.1|2069958_2070138_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04155.1|2070267_2071242_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS04156.1|2071372_2071729_+	RNA signal recognition particle	NA	NA	NA	NA	NA
AZS05967.1|2071718_2072594_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZS04157.1|2072692_2073577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04158.1|2073598_2074894_-	hypothetical protein	NA	NA	NA	NA	NA
2073872:2073889	attL	GCCCAGCGCCTGCAGGGC	NA	NA	NA	NA
AZS04159.1|2075842_2076493_+	NAD(P)H dehydrogenase	NA	NA	NA	NA	NA
AZS05968.1|2076580_2078101_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS04160.1|2078358_2080224_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS04161.1|2080307_2081171_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04162.1|2081269_2082172_-|integrase	integrase	integrase	NA	NA	NA	NA
2083502:2083519	attR	GCCCAGCGCCTGCAGGGC	NA	NA	NA	NA
>prophage 18
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2088190	2141036	4106512	integrase,protease,tRNA	Klosneuvirus(22.22%)	50	2107468:2107485	2135219:2135236
AZS04169.1|2088190_2089093_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04170.1|2089307_2090282_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05969.1|2090278_2090422_+	cbb3-type cytochrome oxidase maturation protein	NA	NA	NA	NA	NA
AZS04171.1|2092043_2092706_+	peptidase S41	NA	NA	NA	NA	NA
AZS04172.1|2092708_2092885_+	cytochrome oxidase	NA	NA	NA	NA	NA
AZS04173.1|2092881_2093820_+	cytochrome oxidase subunit III	NA	NA	NA	NA	NA
AZS04174.1|2093911_2095402_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZS04175.1|2095487_2095640_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04176.1|2095653_2095893_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04177.1|2095988_2096732_+	permease	NA	NA	NA	NA	NA
AZS05970.1|2096764_2097265_+	GCN5 family acetyltransferase	NA	NA	NA	NA	NA
AZS04178.1|2097363_2098287_+	multidrug ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZS04179.1|2098283_2099045_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZS05971.1|2099060_2100143_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04180.1|2100393_2101296_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04181.1|2101442_2102345_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04182.1|2102304_2102718_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZS04183.1|2103002_2103302_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04184.1|2103711_2105994_-	RNA polymerase sigma factor 70	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
AZS04185.1|2106679_2108710_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
2107468:2107485	attL	GGCGCGCCAGCTCGCGTT	NA	NA	NA	NA
AZS04186.1|2108729_2108942_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZS04187.1|2109219_2109759_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZS04188.1|2109872_2111168_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZS04189.1|2111244_2112402_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZS04190.1|2112585_2113485_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZS04191.1|2113503_2114808_-	HflK protein	NA	NA	NA	NA	NA
AZS04192.1|2114773_2115880_-	GTPase HflX	NA	NA	NA	NA	NA
AZS04193.1|2115967_2116204_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
AZS04194.1|2116342_2117413_-	histidinol-phosphate aminotransferase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZS04195.1|2117416_2118772_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZS05972.1|2118798_2119956_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZS04196.1|2119961_2120600_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04197.1|2120601_2121897_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZS04198.1|2121946_2123233_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA	NA
AZS04199.1|2123248_2123755_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04200.1|2123751_2124900_-	23S rRNA (adenine(2503)-C2)-methyltransferase	NA	NA	NA	NA	NA
AZS04201.1|2124927_2125353_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZS04202.1|2125675_2128558_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZS04203.1|2128650_2129406_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04204.1|2130171_2131521_+	histidine kinase	NA	NA	NA	NA	NA
AZS04205.1|2131667_2132570_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04206.1|2132668_2133619_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04207.1|2133692_2134166_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04208.1|2134191_2135400_+	class V aminotransferase	NA	NA	NA	NA	NA
2135219:2135236	attR	AACGCGAGCTGGCGCGCC	NA	NA	NA	NA
AZS04209.1|2135396_2136170_-|tRNA	tRNA (guanine-N1)-methyltransferase	tRNA	NA	NA	NA	NA
AZS04210.1|2136169_2136793_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZS04211.1|2136958_2137219_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZS04212.1|2137522_2138104_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04213.1|2138170_2138425_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04214.1|2138411_2141036_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2168819	2224054	4106512	integrase,protease	Lake_Baikal_phage(25.0%)	52	2186000:2186059	2224055:2224151
AZS04235.1|2168819_2169722_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04236.1|2169970_2170780_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS04237.1|2170952_2171855_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04238.1|2171851_2172745_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZS04239.1|2172869_2173064_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZS04240.1|2173063_2173405_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
AZS04241.1|2173414_2175277_-	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZS04242.1|2175406_2175919_-	co-chaperone HscB	NA	NA	NA	NA	NA
AZS04243.1|2175921_2176245_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZS04244.1|2176246_2176657_-	scaffolding protein	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZS04245.1|2176694_2177906_-	cysteine desulfurase IscS	NA	NA	NA	NA	NA
AZS04246.1|2177923_2178436_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS04247.1|2178651_2179143_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
AZS04248.1|2179395_2181432_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AZS04249.1|2181509_2182712_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AZS04250.1|2182840_2183491_+	LexA family transcriptional regulator	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
AZS04251.1|2183717_2184647_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS04252.1|2184692_2185052_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04253.1|2185048_2185951_-|integrase	integrase	integrase	NA	NA	NA	NA
2186000:2186059	attL	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTT	NA	NA	NA	NA
AZS04254.1|2186569_2186782_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04255.1|2186799_2187531_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04256.1|2187565_2188207_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA	NA
AZS04257.1|2188199_2188868_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZS04258.1|2191080_2191857_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS04259.1|2191878_2193036_-	thiolase	NA	NA	NA	NA	NA
AZS04260.1|2193032_2193464_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04261.1|2193460_2194258_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS04262.1|2194277_2194733_-	oxidoreductase	NA	NA	NA	NA	NA
AZS04263.1|2194745_2195717_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04264.1|2195782_2197006_-	CoA-transferase	NA	NA	NA	NA	NA
AZS04265.1|2197233_2198184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04266.1|2198307_2200761_-	DNA-binding protein	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZS04267.1|2200949_2202254_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZS04268.1|2202358_2203012_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZS04269.1|2203014_2204325_-	trigger factor	NA	NA	NA	NA	NA
AZS04270.1|2204521_2205082_+	hypothetical protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZS04271.1|2205193_2205394_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZS04272.1|2205739_2206306_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04273.1|2206389_2206593_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZS04274.1|2206899_2207220_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04275.1|2207261_2207543_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04276.1|2207617_2208874_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS04277.1|2209256_2209586_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04278.1|2211155_2211977_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZS04279.1|2211976_2213116_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZS04280.1|2213122_2214019_+	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZS04281.1|2214033_2215941_+	ABC transporter	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZS04282.1|2216300_2218913_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZS04283.1|2218965_2221266_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZS04284.1|2221262_2222471_-	aminotransferase	NA	NA	NA	NA	NA
AZS04285.1|2222732_2223107_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04286.1|2223103_2224054_-|integrase	integrase	integrase	NA	NA	NA	NA
2224055:2224151	attR	CCGGCCGGGCTCCTTGAGTGAACTGGGGGGGTGGCGATTTCCAGTTTCTCAAATCCGGTTCGGATGAACCATGCATACAACCTATTGAATCTTCACA	NA	NA	NA	NA
>prophage 20
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2227161	2282480	4106512	integrase,tRNA,transposase	Klosneuvirus(15.38%)	48	2224703:2224722	2292053:2292072
2224703:2224722	attL	GCGCGCGCCAGCCGCGCCGC	NA	NA	NA	NA
AZS04288.1|2227161_2230023_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZS04289.1|2230025_2230532_+	signal peptidase II	NA	NA	NA	NA	NA
AZS04290.1|2230636_2231845_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZS04291.1|2231846_2232785_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04292.1|2232946_2233420_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZS04293.1|2233416_2234367_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04294.1|2234465_2235416_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04295.1|2235526_2235967_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04296.1|2236095_2237325_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZS04297.1|2237363_2238185_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04298.1|2238238_2239390_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04299.1|2239481_2239952_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04300.1|2242520_2245070_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZS04301.1|2245140_2247714_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZS04302.1|2247979_2248180_+	general stress protein CsbD	NA	NA	NA	NA	NA
AZS04303.1|2248211_2248373_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04304.1|2248430_2248769_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZS04305.1|2248917_2249820_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04306.1|2249966_2250869_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04307.1|2251691_2252360_+	arylesterase	NA	NA	NA	NA	NA
AZS05975.1|2252341_2254297_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZS04308.1|2254539_2255289_+	glycerophosphoryl diester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZS04309.1|2255301_2256165_+	competence protein ComJ	NA	NA	NA	NA	NA
AZS04310.1|2256168_2257584_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA	NA
AZS04311.1|2257717_2258446_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZS04312.1|2258584_2258785_-	heavy metal transporter	NA	NA	NA	NA	NA
AZS04313.1|2258960_2259359_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04314.1|2259382_2260783_-	23S rRNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZS04315.1|2260901_2261654_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04316.1|2261942_2262542_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04317.1|2262646_2263426_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZS04318.1|2263422_2264307_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZS04319.1|2264324_2265104_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
AZS04320.1|2265088_2265847_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZS05976.1|2265984_2266620_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZS04321.1|2266887_2267904_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS04322.1|2268001_2269042_-|tRNA	tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZS04323.1|2269176_2270469_+	guanine permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZS04324.1|2271828_2272212_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZS04325.1|2272229_2272817_-	thymidylate synthase	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZS04326.1|2272854_2273805_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04327.1|2273903_2274464_-	L-2,4-diaminobutyric acid acetyltransferase	NA	NA	NA	NA	NA
AZS04328.1|2274460_2275006_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04329.1|2275201_2276230_+	silent information regulator protein Sir2	NA	NA	NA	NA	NA
AZS04330.1|2276270_2277611_+	hypothetical protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZS04331.1|2277719_2278724_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04332.1|2278830_2281431_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS04333.1|2281577_2282480_+|integrase	integrase	integrase	NA	NA	NA	NA
2292053:2292072	attR	GCGCGCGCCAGCCGCGCCGC	NA	NA	NA	NA
>prophage 21
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2321641	2385171	4106512	integrase,protease	uncultured_Caudovirales_phage(11.11%)	50	2348180:2348196	2386958:2386974
AZS04370.1|2321641_2322544_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04371.1|2322845_2323322_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZS04372.1|2323945_2325583_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZS04373.1|2325613_2326927_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	4.7e-149
AZS05983.1|2327087_2327378_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04374.1|2327478_2328801_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04375.1|2328797_2329700_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04376.1|2329846_2330749_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04377.1|2330878_2331262_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04378.1|2331326_2332349_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04379.1|2332377_2333199_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZS05984.1|2333224_2334922_-	phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AZS04380.1|2334986_2336063_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZS04381.1|2336222_2337086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04382.1|2337116_2337686_+	phosphohydrolase	NA	NA	NA	NA	NA
AZS04383.1|2337702_2338554_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
AZS04384.1|2339611_2340493_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
AZS04385.1|2340567_2341557_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZS04386.1|2341619_2342570_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZS04387.1|2342632_2343490_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04388.1|2343549_2344038_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04389.1|2345610_2346801_+	hemolysin D	NA	NA	NA	NA	NA
AZS04390.1|2346797_2348384_+	multidrug resistance protein B	NA	NA	NA	NA	NA
2348180:2348196	attL	CGGCGCCGGCATGTCGC	NA	NA	NA	NA
AZS04391.1|2348402_2349470_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZS05985.1|2349574_2351104_-	DNA-binding protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.0e-14
AZS04392.1|2351538_2353113_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04393.1|2353220_2354237_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS04394.1|2354233_2355073_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS05986.1|2355083_2356715_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.7e-21
AZS04395.1|2356711_2357614_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04396.1|2357804_2359079_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZS04397.1|2359108_2359399_+	cupin	NA	NA	NA	NA	NA
AZS05987.1|2359471_2360485_+	acetylpolyamine aminohydrolase	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZS04398.1|2360504_2361767_+	allantoate amidohydrolase	NA	NA	NA	NA	NA
AZS04399.1|2361769_2362693_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04400.1|2362689_2364183_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS04401.1|2364193_2365126_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZS04402.1|2365343_2366633_+	aminotransferase	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZS05988.1|2366667_2368011_-	sodium:alanine symporter	NA	NA	NA	NA	NA
AZS04403.1|2368083_2369604_-	ATP-binding protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
AZS04404.1|2369758_2370490_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04405.1|2370587_2371898_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZS04406.1|2371913_2372825_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZS05989.1|2372821_2373409_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZS04407.1|2373470_2373857_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZS04408.1|2373868_2374339_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZS04409.1|2374350_2374974_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZS04410.1|2374994_2377742_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS04411.1|2384018_2384234_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04412.1|2384220_2385171_+|integrase	integrase	integrase	NA	NA	NA	NA
2386958:2386974	attR	CGGCGCCGGCATGTCGC	NA	NA	NA	NA
>prophage 22
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2530112	2588356	4106512	integrase,tRNA	Planktothrix_phage(28.57%)	53	2561175:2561192	2594156:2594173
AZS04532.1|2530112_2531015_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04533.1|2531542_2532199_-	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AZS04534.1|2532213_2533881_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZS04535.1|2533883_2534513_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04536.1|2534724_2535819_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04537.1|2535963_2536776_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
AZS04538.1|2536779_2538363_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZS04539.1|2538533_2539664_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS04540.1|2539850_2540927_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZS06000.1|2541008_2541659_-	3-isopropylmalate dehydratase	NA	NA	NA	NA	NA
AZS04541.1|2541673_2543077_-	isopropylmalate isomerase	NA	NA	NA	NA	NA
AZS04542.1|2543360_2544179_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04543.1|2544175_2544880_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZS04544.1|2545779_2546895_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04545.1|2546928_2547303_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04546.1|2547325_2548483_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZS04547.1|2548495_2548729_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04548.1|2549363_2552333_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZS04549.1|2552347_2552557_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZS04550.1|2552708_2553338_-	hypothetical protein	NA	NA	NA	NA	NA
AZS06001.1|2553334_2555392_-	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AZS04551.1|2555448_2556129_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04552.1|2556125_2556686_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04553.1|2556692_2557790_-	ATP-binding protein	NA	NA	NA	NA	NA
AZS04554.1|2557942_2558536_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA	NA
AZS04555.1|2558532_2559825_+	molybdenum cofactor biosynthesis protein MoaA	NA	NA	NA	NA	NA
AZS04556.1|2559838_2560381_+	molybdopterin-guanine dinucleotide biosynthesis protein MobB	NA	NA	NA	NA	NA
AZS04557.1|2560390_2561227_-	peptidase M48	NA	NA	NA	NA	NA
2561175:2561192	attL	GCCAGGCCGGCCACGGCG	NA	NA	NA	NA
AZS04558.1|2561260_2562322_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZS04559.1|2562363_2563416_-	diguanylate cyclase	NA	NA	NA	NA	NA
AZS04560.1|2563431_2563734_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04561.1|2563875_2564826_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04562.1|2565004_2566699_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS04563.1|2566695_2567781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZS04564.1|2567828_2568728_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04565.1|2568738_2569383_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
AZS04566.1|2570404_2573647_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AZS04567.1|2573657_2574812_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AZS04568.1|2575038_2576001_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AZS04569.1|2576147_2577050_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04570.1|2577196_2578099_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04571.1|2578108_2578798_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04572.1|2578857_2579295_-	thioesterase	NA	NA	NA	NA	NA
AZS04573.1|2579340_2580234_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZS04574.1|2580281_2581454_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS04575.1|2581450_2582605_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS04576.1|2582801_2583152_-	electron transporter	NA	NA	NA	NA	NA
AZS04577.1|2583141_2583576_-	cyclase	NA	NA	NA	NA	NA
AZS04578.1|2583592_2584495_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04579.1|2584690_2585158_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZS04580.1|2585138_2586296_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZS04581.1|2586361_2587288_-	stomatin 2	NA	NA	NA	NA	NA
AZS04582.1|2587453_2588356_+|integrase	integrase	integrase	NA	NA	NA	NA
2594156:2594173	attR	GCCAGGCCGGCCACGGCG	NA	NA	NA	NA
>prophage 23
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2630684	2697136	4106512	integrase,transposase	uncultured_Caudovirales_phage(40.0%)	58	2626812:2626830	2700982:2701000
2626812:2626830	attL	GCGCCGCCTGGCGCCGCTG	NA	NA	NA	NA
AZS04620.1|2630684_2631587_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04621.1|2631602_2631815_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04622.1|2631956_2632529_+	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AZS04623.1|2632531_2633542_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZS04624.1|2633534_2634035_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZS04625.1|2634045_2634387_+	flagellar assembly protein FliO	NA	NA	NA	NA	NA
AZS06005.1|2634455_2635190_+	flagellar biosynthesis protein flip	NA	NA	NA	NA	NA
AZS04626.1|2635206_2635476_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZS04627.1|2635498_2636287_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZS04628.1|2636333_2637350_-|transposase	transposase	transposase	NA	NA	NA	NA
AZS04629.1|2637566_2639009_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZS04630.1|2639187_2640807_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZS04631.1|2640927_2642748_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZS04632.1|2642826_2644359_-	flagellar biosynthesis protein FlgL	NA	NA	NA	NA	NA
AZS04633.1|2644392_2646039_-	flagellar biosynthesis protein FlgK	NA	NA	NA	NA	NA
AZS04634.1|2646108_2647131_-	flagellar biosynthesis protein FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZS04635.1|2647148_2648282_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZS04636.1|2648284_2648974_-	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AZS04637.1|2648973_2649759_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZS04638.1|2649802_2650567_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AZS04639.1|2650605_2652027_-	flagellar biosynthesis protein FlgE	NA	NA	NA	NA	NA
AZS04640.1|2652092_2652797_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZS04641.1|2652844_2653264_-	flagellar basal-body rod protein FlgC	NA	NA	NA	NA	NA
AZS04642.1|2653276_2653684_-	flagellar biosynthesis protein FlgB	NA	NA	NA	NA	NA
AZS06006.1|2653867_2654578_+	flagellar biosynthesis protein FlgA	NA	NA	NA	NA	NA
AZS04643.1|2654704_2654995_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZS04644.1|2655012_2655495_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04645.1|2660000_2661155_-	flagellar biosynthetic protein FlhB	NA	NA	NA	NA	NA
AZS04646.1|2661460_2662477_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS04647.1|2662723_2663512_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04648.1|2663578_2664259_+	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AZS04649.1|2664255_2665026_+	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZS04650.1|2665124_2666075_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04651.1|2666130_2667048_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZS04652.1|2667058_2668237_-	mandelate racemase	NA	NA	NA	NA	NA
AZS04653.1|2668256_2669252_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04654.1|2670840_2671449_+	isopropylmalate isomerase	NA	NA	NA	NA	NA
AZS04655.1|2671436_2672477_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZS04656.1|2672494_2673457_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04657.1|2673453_2674647_-	formyl-CoA transferase	NA	NA	NA	NA	NA
AZS04658.1|2674643_2675441_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZS04659.1|2675466_2676453_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04660.1|2676471_2678511_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZS06007.1|2678712_2679393_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04661.1|2679406_2680318_-	malyl-CoA thiolesterase	NA	NA	NA	NA	NA
AZS04662.1|2680314_2680893_-	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AZS04663.1|2681031_2681937_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04664.1|2681944_2685364_+	nuclease	NA	NA	NA	NA	NA
AZS04665.1|2685351_2687952_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS04666.1|2688907_2689516_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04667.1|2689933_2690692_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04668.1|2690688_2691891_+	cardiolipin synthase B	NA	NA	NA	NA	NA
AZS04669.1|2691887_2692088_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04670.1|2692078_2693029_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04671.1|2693936_2695082_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04672.1|2695068_2695824_+	permease	NA	NA	NA	NA	NA
AZS04673.1|2695940_2696120_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04674.1|2696185_2697136_-|integrase	integrase	integrase	NA	NA	NA	NA
2700982:2701000	attR	GCGCCGCCTGGCGCCGCTG	NA	NA	NA	NA
>prophage 24
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	2918985	3053196	4106512	integrase,tRNA,transposase	uncultured_Mediterranean_phage(16.67%)	111	2972159:2972182	3066534:3066563
AZS04851.1|2918985_2919888_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04852.1|2919934_2920489_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZS04853.1|2920556_2921402_-	phosphoesterase	NA	NA	NA	NA	NA
AZS04854.1|2921471_2922440_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS04855.1|2926135_2930029_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04856.1|2930352_2930529_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04857.1|2930797_2934028_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS04858.1|2934309_2935137_-	DNAase	NA	NA	NA	NA	NA
AZS04859.1|2935170_2935866_-	lipoprotein ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZS06027.1|2935858_2937091_-	cell division protein FtsX	NA	NA	NA	NA	NA
AZS04860.1|2937184_2938126_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06028.1|2938107_2939808_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZS04861.1|2940082_2941015_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZS04862.1|2941044_2941800_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS04863.1|2941806_2943327_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZS04864.1|2943369_2943672_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04865.1|2943668_2944301_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04866.1|2944379_2946245_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZS04867.1|2946241_2947057_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZS04868.1|2947064_2948180_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS04869.1|2948590_2948833_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04870.1|2949084_2949963_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS04871.1|2949962_2950787_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZS04872.1|2950954_2951857_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04873.1|2952117_2954967_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZS04874.1|2954948_2955677_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04875.1|2955817_2957281_-	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZS04876.1|2957277_2957649_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04877.1|2957666_2958980_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04878.1|2959016_2959475_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04879.1|2959587_2960538_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04880.1|2960534_2961512_-|tRNA	tRNA-dihydrouridine synthase A	tRNA	NA	NA	NA	NA
AZS04881.1|2961687_2962674_+	homoserine kinase	NA	NA	NA	NA	NA
AZS04882.1|2962717_2963518_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04883.1|2964320_2965223_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04884.1|2965422_2966025_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04885.1|2966043_2966676_+	rRNA methyltransferase	NA	NA	NA	NA	NA
AZS04886.1|2966913_2968800_+	cell division protein FtsH	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZS04887.1|2968818_2969661_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZS04888.1|2969657_2971016_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZS04889.1|2971236_2972031_+	hypothetical protein	NA	NA	NA	NA	NA
2972159:2972182	attL	GGGTGCCTGTCCCCGCGGGGACAG	NA	NA	NA	NA
AZS04890.1|2972261_2973755_-	exopolyphosphatase	NA	NA	NA	NA	NA
2972159:2972182	attL	GGGTGCCTGTCCCCGCGGGGACAG	NA	NA	NA	NA
AZS04891.1|2973990_2976072_+	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
AZS04892.1|2976266_2977307_+	phosphate ABC transporter substrate-binding protein	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZS04893.1|2977441_2978458_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AZS04894.1|2978500_2979337_+	phosphate transporter permease PstA	NA	NA	NA	NA	NA
AZS06029.1|2979381_2980158_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZS04895.1|2980525_2981476_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04896.1|2981502_2981967_-	barstar family protein 2	NA	NA	NA	NA	NA
AZS04897.1|2983173_2985462_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZS04898.1|2985578_2986451_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04899.1|2986493_2987648_+	aminotransferase	NA	NA	NA	NA	NA
AZS04900.1|2987682_2988513_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZS04901.1|2988596_2990141_+	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AZS04902.1|2990183_2990543_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04903.1|2990544_2990958_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04904.1|2990998_2991316_-	hypothetical protein	NA	NA	NA	NA	NA
AZS06030.1|2991400_2992114_-	hypothetical protein	NA	NA	NA	NA	NA
AZS06031.1|2992380_2993802_+	sirohydrochlorin ferrochelatase	NA	NA	NA	NA	NA
AZS04905.1|2996474_2997425_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04906.1|2997404_2997665_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04907.1|2997997_2999014_-|transposase	transposase	transposase	NA	NA	NA	NA
2997959:2997982	attR	GGGTGCCTGTCCCCGCGGGGACAG	NA	NA	NA	NA
AZS06032.1|2999349_2999991_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
2997959:2997982	attR	GGGTGCCTGTCCCCGCGGGGACAG	NA	NA	NA	NA
AZS04908.1|3000081_3001518_-	peptidase M15	NA	NA	NA	NA	NA
AZS04909.1|3001675_3002749_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZS04910.1|3002745_3003882_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZS04911.1|3004026_3004371_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZS04912.1|3004437_3006318_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZS04913.1|3006367_3007303_+	preprotein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZS04914.1|3007635_3008652_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS04915.1|3009589_3011017_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZS04916.1|3011013_3012036_+	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZS04917.1|3012025_3012499_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AZS04918.1|3012639_3013527_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZS04919.1|3013523_3015167_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZS06033.1|3015163_3016171_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZS04920.1|3017001_3018018_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS04921.1|3018117_3018750_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZS04922.1|3018758_3019148_-	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZS04923.1|3019200_3020253_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZS04924.1|3021116_3021881_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04925.1|3021954_3022455_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZS04926.1|3022469_3024527_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZS04927.1|3024553_3024847_-	two-component system response regulator	NA	NA	NA	NA	NA
AZS04928.1|3024948_3025896_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
AZS04929.1|3025908_3026784_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZS04930.1|3026904_3027465_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS04931.1|3027499_3027823_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS04932.1|3028258_3028996_+	flagellar biosynthesis sigma factor	NA	NA	NA	NA	NA
AZS04933.1|3029294_3030197_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS04934.1|3030488_3030752_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZS04935.1|3030825_3031107_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06034.1|3031123_3031966_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZS04936.1|3031980_3032316_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04937.1|3032369_3033020_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZS04938.1|3034700_3035645_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04939.1|3035690_3036008_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZS04940.1|3036010_3036949_-	cytochrome C biogenesis protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZS04941.1|3037126_3037612_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AZS04942.1|3037630_3038179_+	diguanylate cyclase	NA	NA	NA	NA	NA
AZS04943.1|3039692_3040334_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZS06035.1|3040488_3042837_+	3-hydroxyalkanoate synthetase	NA	NA	NA	NA	NA
AZS04944.1|3042833_3043772_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZS04945.1|3043797_3044988_+	acetate kinase	NA	NA	NA	NA	NA
AZS04946.1|3044984_3045758_+	enoyl-ACP reductase	NA	NA	NA	NA	NA
AZS04947.1|3045787_3046981_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZS04948.1|3047098_3048109_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZS04949.1|3048126_3050163_-	transketolase	NA	NA	NA	NA	NA
AZS04950.1|3050357_3051098_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
AZS04951.1|3051244_3052147_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04952.1|3052293_3053196_+|integrase	integrase	integrase	NA	NA	NA	NA
3066534:3066563	attR	GGTGCCTGTCCCCGCAGGGGGACTGGCACC	NA	NA	NA	NA
>prophage 25
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	3077000	3215738	4106512	integrase,transposase,holin	Bacillus_virus(11.76%)	121	3082387:3082403	3220520:3220537
AZS04966.1|3077000_3078017_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS04967.1|3078154_3079204_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZS04968.1|3079356_3080259_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS04969.1|3080354_3081041_-	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AZS04970.1|3081290_3081671_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZS04971.1|3081976_3082849_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
3082387:3082403	attL	CACGCAAGGCCGACTGG	NA	NA	NA	NA
AZS04972.1|3082856_3083237_-	hypothetical protein	NA	NA	NA	NA	NA
3082387:3082403	attL	CACGCAAGGCCGACTGG	NA	NA	NA	NA
AZS04973.1|3083390_3084665_-	radical SAM protein	NA	NA	NA	NA	NA
AZS06038.1|3086152_3087061_-	sulfate adenylyltransferase	NA	NA	NA	NA	NA
AZS04974.1|3087858_3088923_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZS04975.1|3088947_3089730_-	sulfate ABC transporter permease	NA	NA	NA	NA	NA
AZS04976.1|3089844_3090519_-	sulfate ABC transporter permease	NA	NA	NA	NA	NA
AZS04977.1|3090540_3090744_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04978.1|3090759_3091794_-	sulfate transporter subunit	NA	NA	NA	NA	NA
AZS04979.1|3091983_3092625_-	peroxidase	NA	NA	NA	NA	NA
AZS04980.1|3092707_3094534_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS04981.1|3094777_3095707_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AZS04982.1|3095706_3096456_-	electron transporter RnfB	NA	NA	NA	NA	NA
AZS04983.1|3096527_3097442_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZS04984.1|3097461_3098607_+	murein transglycosylase	NA	NA	NA	NA	NA
AZS04985.1|3098667_3099579_-	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZS04986.1|3099659_3100610_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS06039.1|3100708_3101038_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04987.1|3101327_3102317_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZS04988.1|3102313_3103255_-	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZS04989.1|3103251_3104472_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04990.1|3104514_3104829_-	hypothetical protein	NA	NA	NA	NA	NA
AZS04991.1|3105020_3105380_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZS04992.1|3105381_3107097_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZS04993.1|3107284_3107956_-	cytidylate kinase	NA	NA	NA	NA	NA
AZS04994.1|3107970_3109299_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZS04995.1|3109295_3110195_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
AZS04996.1|3110281_3111367_-	chorismate mutase	NA	NA	NA	NA	NA
AZS06040.1|3111359_3112490_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AZS04997.1|3112492_3115174_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZS04998.1|3115544_3116126_+	hypothetical protein	NA	NA	NA	NA	NA
AZS04999.1|3116251_3116977_+	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AZS05000.1|3116973_3117651_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZS05001.1|3117866_3119048_+	MFS transporter	NA	NA	NA	NA	NA
AZS05002.1|3119820_3120003_+	hypothetical protein	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZS05003.1|3120032_3120983_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS06041.1|3121112_3121505_+	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZS05004.1|3121781_3122693_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZS05005.1|3122817_3123792_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05006.1|3123788_3124739_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05007.1|3124837_3125923_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZS05008.1|3126020_3126431_+	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
AZS05009.1|3127046_3128960_+	peptidase	NA	NA	NA	NA	NA
AZS05010.1|3129095_3131708_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZS05011.1|3131709_3132444_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZS05012.1|3132607_3133789_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05013.1|3133785_3133998_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05014.1|3133994_3134975_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZS06042.1|3135020_3135848_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZS06043.1|3135997_3137812_+	metal ABC transporter permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZS05015.1|3137866_3138250_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AZS05016.1|3138246_3139149_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05017.1|3139309_3139561_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05018.1|3139754_3139970_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05019.1|3140066_3141185_-	N-acylglucosamine 2-epimerase	NA	NA	NA	NA	NA
AZS05020.1|3141304_3141517_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05021.1|3141676_3141886_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05022.1|3141950_3142901_-|integrase	integrase	integrase	NA	NA	NA	NA
3142118:3142134	attR	CACGCAAGGCCGACTGG	NA	NA	NA	NA
AZS05023.1|3144077_3145448_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
3142118:3142134	attR	CACGCAAGGCCGACTGG	NA	NA	NA	NA
AZS05024.1|3145480_3146272_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05025.1|3146284_3147340_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05026.1|3147365_3148241_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05027.1|3148346_3148595_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05028.1|3148629_3150084_-	carboxylase	NA	NA	NA	NA	NA
AZS05029.1|3150080_3150602_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
AZS05030.1|3150630_3151983_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05031.1|3152206_3155095_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZS05032.1|3157239_3158541_+	phospholipase	NA	NA	NA	NA	NA
AZS05033.1|3158555_3159272_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05034.1|3159553_3160234_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05035.1|3160245_3160413_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05036.1|3160761_3161421_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZS06044.1|3161819_3163652_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZS05037.1|3163648_3164599_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05038.1|3164680_3165292_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05039.1|3165762_3167478_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZS05040.1|3167488_3167980_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZS05041.1|3168052_3169069_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZS05042.1|3169236_3170016_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZS06045.1|3170034_3170562_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05043.1|3170855_3171125_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZS05044.1|3171215_3173375_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZS05045.1|3173495_3174215_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05046.1|3174211_3175162_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05047.1|3175302_3176520_+	threonine dehydratase	NA	NA	NA	NA	NA
AZS05048.1|3176513_3177125_-	hypothetical protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZS05049.1|3177758_3178736_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZS05050.1|3178879_3179626_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZS05051.1|3179647_3180094_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZS05052.1|3180881_3183113_+|holin	choline transporter	holin	NA	NA	NA	NA
AZS05053.1|3183135_3183936_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05054.1|3184217_3185450_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZS05055.1|3185560_3186550_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05056.1|3186580_3187969_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05057.1|3188016_3188391_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05058.1|3188381_3189509_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZS05059.1|3189567_3190551_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05060.1|3190747_3191764_+|transposase	transposase	transposase	NA	NA	NA	NA
AZS05061.1|3191960_3192785_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS05062.1|3192862_3193753_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05063.1|3193956_3195108_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZS05064.1|3195111_3196143_+	peptidase M14	NA	NA	NA	NA	NA
AZS05065.1|3196271_3197243_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05066.1|3197267_3199352_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05067.1|3199418_3200411_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05068.1|3200519_3201854_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05069.1|3201879_3203892_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZS06046.1|3203888_3205937_-	hydantoinase	NA	NA	NA	NA	NA
AZS05070.1|3206040_3206688_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS06047.1|3206870_3207323_+	azurin	NA	NA	NA	NA	NA
AZS05071.1|3207366_3208038_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS05072.1|3208052_3209546_-	RND transporter	NA	NA	NA	NA	NA
AZS05073.1|3209542_3212656_-	acriflavine resistance protein B	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZS05074.1|3212668_3213775_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZS05075.1|3213898_3214567_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS05076.1|3214787_3215738_+|integrase	integrase	integrase	NA	NA	NA	NA
3220520:3220537	attR	CGGCGCGCTGGCCGCCTC	NA	NA	NA	NA
>prophage 26
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	3256222	3329384	4106512	integrase	Klosneuvirus(16.67%)	59	3321140:3321158	3334632:3334650
AZS05110.1|3256222_3257173_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05111.1|3257169_3258189_-	fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZS05112.1|3258198_3260907_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZS05113.1|3261054_3261711_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05114.1|3261809_3262760_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS06051.1|3262907_3263801_+	mechanosensitive ion channel protein	NA	NA	NA	NA	NA
AZS05115.1|3264000_3265695_+	acetolactate synthase	NA	NA	NA	NA	NA
AZS05116.1|3265729_3266656_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06052.1|3266724_3267822_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05117.1|3267840_3268704_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZS05118.1|3268715_3269498_+	ABC transporter permease	NA	NA	NA	NA	NA
AZS05119.1|3269494_3270613_+	deacylase	NA	NA	NA	NA	NA
AZS05120.1|3270609_3272142_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZS05121.1|3272182_3273190_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZS06053.1|3273421_3274057_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05122.1|3274072_3275095_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZS05123.1|3275411_3276146_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05124.1|3276230_3277976_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZS05125.1|3277972_3278725_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZS05126.1|3278769_3279726_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05127.1|3279814_3280381_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05128.1|3280388_3281249_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZS05129.1|3281278_3282007_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
AZS05130.1|3282038_3282722_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS05131.1|3282919_3283153_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05132.1|3283559_3284474_-	ABC transporter	NA	NA	NA	NA	NA
AZS05133.1|3284538_3285447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05134.1|3285537_3286962_-	CyaE	NA	NA	NA	NA	NA
AZS05135.1|3286963_3288286_-	hemolysin D	NA	NA	NA	NA	NA
AZS05136.1|3288282_3290421_-	peptidase C39	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZS05137.1|3290498_3295721_-	hemolysin	NA	NA	NA	NA	NA
AZS06054.1|3295805_3295985_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05138.1|3296097_3296655_+	lysine acyltransferase	NA	NA	NA	NA	NA
AZS05139.1|3296670_3298152_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZS05140.1|3300322_3301660_-	amino acid deaminase	NA	NA	NA	NA	NA
AZS05141.1|3301694_3303692_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZS05142.1|3303709_3305758_-	hydantoinase	NA	NA	NA	NA	NA
AZS05143.1|3305888_3306755_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05144.1|3307023_3307989_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZS05145.1|3308103_3309252_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZS05146.1|3309676_3309988_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZS05147.1|3310021_3310282_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZS05148.1|3310431_3311565_+	GTPase ObgE	NA	NA	NA	NA	NA
AZS05149.1|3311635_3312772_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZS05150.1|3312937_3313732_-	transcriptional regulator	NA	NA	NA	NA	NA
AZS05151.1|3313794_3314238_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZS05152.1|3314353_3315304_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS06055.1|3315486_3315834_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZS05153.1|3315906_3318102_+	DNA methylase	NA	NA	NA	NA	NA
AZS05154.1|3318371_3319274_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05155.1|3319386_3319812_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05156.1|3319889_3320861_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06056.1|3320980_3323425_+	ligand-gated channel	NA	NA	NA	NA	NA
3321140:3321158	attL	ATCGACGTCGATATCCCGC	NA	NA	NA	NA
AZS05157.1|3323440_3324031_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZS05158.1|3324077_3324233_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05159.1|3324274_3325177_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05160.1|3325382_3326648_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZS05161.1|3326681_3327779_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZS05162.1|3328433_3329384_+|integrase	integrase	integrase	NA	NA	NA	NA
3334632:3334650	attR	GCGGGATATCGACGTCGAT	NA	NA	NA	NA
>prophage 27
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	3340671	3451253	4106512	integrase,tRNA,tail,terminase	uncultured_Caudovirales_phage(14.29%)	115	3367460:3367477	3441109:3441126
AZS05173.1|3340671_3341622_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05174.1|3342353_3342731_+	pterin-4-alpha-carbinolamine dehydratase	NA	NA	NA	NA	NA
AZS05175.1|3342715_3343417_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05176.1|3343560_3344253_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AZS06057.1|3344252_3345293_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZS05177.1|3345471_3347838_+	LPS biosynthesis protein	NA	NA	NA	NA	NA
AZS05178.1|3347834_3349394_+	molecular chaperone SurA	NA	NA	NA	NA	NA
AZS05179.1|3349418_3350216_+	16S rRNA methyltransferase	NA	NA	NA	NA	NA
AZS05180.1|3350247_3351393_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZS05181.1|3351497_3352940_+	pyruvate kinase	NA	NA	NA	NA	NA
AZS05182.1|3352942_3354172_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05183.1|3356309_3357260_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05184.1|3358389_3358947_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05185.1|3358922_3359273_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05186.1|3359441_3360236_-	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZS05187.1|3360232_3361282_-	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AZS05188.1|3361281_3361971_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZS05189.1|3362057_3362555_-	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AZS05190.1|3362586_3363903_-	translocation protein TolB	NA	NA	NA	NA	NA
AZS05191.1|3363919_3364894_-	protein TolA	NA	NA	NA	NA	NA
AZS05192.1|3364930_3365389_-	protein TolR	NA	NA	NA	NA	NA
AZS05193.1|3365388_3366069_-	protein TolQ	NA	NA	NA	NA	NA
AZS05194.1|3366071_3366500_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZS05195.1|3366552_3368283_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
3367460:3367477	attL	GCCAGCGGCAGGTCCAGC	NA	NA	NA	NA
AZS05196.1|3368348_3368921_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZS05197.1|3368901_3369588_+	two-component system response regulator	NA	NA	NA	NA	NA
AZS05198.1|3369647_3370016_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05199.1|3369943_3370615_+	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZS05200.1|3370943_3371165_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05201.1|3371164_3371446_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05202.1|3371442_3371958_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05203.1|3371957_3372509_-	lysozyme	NA	NA	NA	NA	NA
AZS05204.1|3372487_3372730_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05205.1|3372734_3373547_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05206.1|3373546_3373810_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05207.1|3374028_3374445_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05208.1|3374449_3378406_-	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZS05209.1|3378398_3378788_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZS05210.1|3378784_3379318_-	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZS05211.1|3379385_3379745_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05212.1|3379754_3382367_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZS05213.1|3382392_3382683_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZS05214.1|3382700_3383030_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZS05215.1|3383039_3383558_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZS05216.1|3383812_3384313_-	hypothetical protein	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZS05217.1|3384320_3384743_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05218.1|3384739_3385138_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZS05219.1|3385134_3385530_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZS05220.1|3385529_3385730_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05221.1|3385731_3386214_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZS05222.1|3386276_3386528_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05223.1|3387202_3388153_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05224.1|3388581_3389184_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZS05225.1|3389306_3389549_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZS05226.1|3389554_3390667_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AZS05227.1|3390638_3392057_-	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZS05228.1|3392059_3393337_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZS05229.1|3393323_3393809_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AZS05230.1|3394448_3395351_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05231.1|3395416_3395638_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05232.1|3395652_3396351_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05233.1|3396343_3396664_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06058.1|3397143_3397755_+	repressor	NA	NA	NA	NA	NA
AZS05234.1|3397826_3398033_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05235.1|3398284_3399187_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05236.1|3399333_3400407_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05237.1|3400574_3401369_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05238.1|3401408_3401933_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05239.1|3401925_3403668_-	sulfite reductase	NA	NA	NA	NA	NA
AZS05240.1|3403877_3404636_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZS05241.1|3404638_3405346_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZS05242.1|3405362_3406244_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS05243.1|3406254_3407013_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS06059.1|3406981_3407737_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05244.1|3407806_3409225_+	amidase	NA	NA	NA	NA	NA
AZS05245.1|3409246_3409897_-	carbonate dehydratase	NA	NA	NA	NA	NA
AZS05246.1|3410030_3410366_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05247.1|3410502_3411405_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05248.1|3411481_3413302_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZS05249.1|3413306_3414380_-	ATP-dependent DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZS05250.1|3414502_3415471_+	serine dehydratase	NA	NA	NA	NA	NA
AZS05251.1|3415544_3416456_+	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AZS05252.1|3416474_3417047_-	Holliday junction ATP-dependent DNA helicase RuvA	NA	NA	NA	NA	NA
AZS05253.1|3417127_3417676_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZS05254.1|3417675_3419265_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZS05255.1|3419334_3419574_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZS05256.1|3419614_3420640_-|tRNA	tRNA-dihydrouridine synthase B	tRNA	NA	NA	NA	NA
AZS05257.1|3420705_3421878_-	monooxygenase	NA	NA	NA	NA	NA
AZS05258.1|3421983_3422436_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05259.1|3422445_3423786_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AZS05260.1|3424102_3425140_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05261.1|3425521_3425881_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06060.1|3425964_3426906_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05262.1|3427028_3427931_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05263.1|3428224_3429319_+	porin	NA	NA	NA	NA	NA
AZS06061.1|3429409_3430282_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05264.1|3430303_3431143_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZS05265.1|3431218_3432736_+	peptidase	NA	NA	NA	NA	NA
AZS05266.1|3432832_3433933_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZS05267.1|3433949_3434372_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZS05268.1|3434394_3434607_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05269.1|3434653_3435574_-	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AZS05270.1|3435756_3436506_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05271.1|3436508_3436838_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05272.1|3437044_3438478_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZS05273.1|3438489_3438873_-	thiol-disulfide isomerase	NA	NA	NA	NA	NA
AZS05274.1|3438934_3439735_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05275.1|3439833_3440784_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05276.1|3440839_3441652_+	damage-inducible protein	NA	NA	NA	NA	NA
3441109:3441126	attR	GCTGGACCTGCCGCTGGC	NA	NA	NA	NA
AZS05277.1|3441810_3442659_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05278.1|3442859_3447254_+	dermonecrotic toxin	NA	NA	NA	NA	NA
AZS05279.1|3447347_3448325_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05280.1|3448711_3449290_+	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZS05281.1|3449437_3450487_-	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AZS06062.1|3450527_3451253_-|tRNA	arginyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
>prophage 28
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	3601454	3664141	4106512	integrase	Lake_Baikal_phage(14.29%)	54	3624448:3624465	3667058:3667075
AZS05415.1|3601454_3602405_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05416.1|3602521_3603589_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AZS05417.1|3603664_3606793_-	ribonuclease E	NA	NA	NA	NA	NA
AZS05418.1|3607360_3608266_+	RNA pseudouridine synthase	NA	NA	NA	NA	NA
AZS05419.1|3608268_3608940_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZS05420.1|3609096_3610056_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AZS05421.1|3610063_3610726_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AZS05422.1|3610722_3611673_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05423.1|3611794_3613048_+	carnitine dehydratase	NA	NA	NA	NA	NA
AZS05424.1|3613025_3613988_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05425.1|3614119_3614614_+	dehydratase	NA	NA	NA	NA	NA
AZS05426.1|3614613_3615846_+	mesaconyl-CoA isomerase	NA	NA	NA	NA	NA
AZS06070.1|3615980_3616205_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05427.1|3616274_3616505_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05428.1|3616591_3616873_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05429.1|3616859_3617846_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05430.1|3617989_3618394_+	enamine deaminase RidA	NA	NA	NA	NA	NA
AZS05431.1|3618535_3621922_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZS05432.1|3621952_3623416_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AZS05433.1|3623436_3625053_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
3624448:3624465	attL	GCCCGGCAAGCCCTGCTC	NA	NA	NA	NA
AZS05434.1|3625138_3625798_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05435.1|3625827_3626268_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05436.1|3626778_3626982_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZS05437.1|3627157_3628063_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05438.1|3628161_3629112_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05439.1|3630893_3632087_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS05440.1|3632152_3633181_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS05441.1|3633207_3634380_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS05442.1|3634505_3635483_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05443.1|3635493_3636465_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05444.1|3636531_3637317_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS05445.1|3637309_3638542_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZS05446.1|3638737_3639493_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZS05447.1|3639603_3640122_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZS06071.1|3641910_3643311_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05448.1|3643410_3643755_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05449.1|3643843_3644314_+	universal stress protein	NA	NA	NA	NA	NA
AZS05450.1|3644724_3645123_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZS05451.1|3645254_3646157_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05452.1|3648649_3649384_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZS05453.1|3649793_3649973_+	hypothetical protein	NA	NA	NA	NA	NA
AZS06072.1|3650163_3651477_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZS05454.1|3651492_3653004_-	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05455.1|3653000_3654206_-	ABC transporter permease	NA	NA	NA	NA	NA
AZS05456.1|3654401_3655379_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05457.1|3655471_3655966_-	acetyltransferase	NA	NA	NA	NA	NA
AZS05458.1|3656095_3657154_+	glycosyl transferase family 2	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZS05459.1|3657150_3658770_+	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AZS05460.1|3658957_3660061_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05461.1|3660057_3660513_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05462.1|3660518_3661442_-	peptidase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZS05463.1|3661531_3662191_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05464.1|3662187_3663102_-	transporter	NA	NA	NA	NA	NA
AZS05465.1|3663238_3664141_+|integrase	integrase	integrase	NA	NA	NA	NA
3667058:3667075	attR	GAGCAGGGCTTGCCGGGC	NA	NA	NA	NA
>prophage 29
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	3775072	3911646	4106512	integrase,tRNA	Klosneuvirus(10.53%)	118	3780350:3780373	3914128:3914145
AZS05573.1|3775072_3775975_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05574.1|3776034_3776595_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZS05575.1|3778097_3778979_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05576.1|3779092_3780295_+	arabinose transporter permease	NA	NA	NA	NA	NA
3780350:3780373	attL	GTGCCTGTCCCAGCGGGGACAGGC	NA	NA	NA	NA
AZS05577.1|3780423_3782283_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
3780350:3780373	attL	GTGCCTGTCCCAGCGGGGACAGGC	NA	NA	NA	NA
AZS05578.1|3782360_3783170_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZS05579.1|3783240_3784242_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05580.1|3784273_3785134_-	cupin	NA	NA	NA	NA	NA
AZS05581.1|3785333_3786338_+	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZS05582.1|3786334_3787921_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05583.1|3787929_3788856_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZS05584.1|3788878_3789505_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05585.1|3789603_3790554_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS06078.1|3790550_3791687_-	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZS05586.1|3791740_3792517_+	metal-binding protein	NA	NA	NA	NA	NA
AZS05587.1|3792541_3793000_-	large-conductance mechanosensitive channel	NA	NA	NA	NA	NA
AZS06079.1|3793139_3793781_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZS05588.1|3793845_3795228_+	cytochrome B	NA	NA	NA	NA	NA
AZS06080.1|3795253_3796102_+	cytochrome C	NA	NA	NA	NA	NA
AZS05589.1|3796260_3796872_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZS05590.1|3796881_3797331_+	stringent starvation protein B	NA	NA	NA	NA	NA
AZS05591.1|3797849_3797990_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05592.1|3797997_3798159_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05593.1|3798484_3799387_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05594.1|3800430_3800709_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05595.1|3801851_3802400_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AZS05596.1|3802462_3804142_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZS05597.1|3804138_3805890_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZS05598.1|3805886_3806012_-	cytochrome bd biosynthesis protein	NA	NA	NA	NA	NA
AZS05599.1|3806025_3807180_-	cytochrome d ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
AZS05600.1|3807195_3808773_-	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AZS05601.1|3808898_3809444_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05602.1|3809617_3809989_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05603.1|3810003_3810906_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05604.1|3811684_3812665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05605.1|3812678_3813803_+	carnitine dehydratase	NA	NA	NA	NA	NA
AZS05606.1|3813810_3815565_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZS05607.1|3815671_3816571_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05608.1|3816635_3817619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05609.1|3817754_3818735_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05610.1|3818751_3820143_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AZS05611.1|3820294_3820831_+|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein TsaE	tRNA	NA	NA	NA	NA
AZS05612.1|3820761_3822147_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AZS06081.1|3822289_3822910_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05613.1|3823014_3824904_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZS05614.1|3824900_3825842_+|tRNA	tRNA dimethylallyltransferase	tRNA	NA	NA	NA	NA
AZS05615.1|3825947_3826997_-	phosphoribosylaminoimidazole synthetase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZS05616.1|3827249_3827951_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZS05617.1|3827947_3828646_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05618.1|3828646_3830002_+	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZS05619.1|3829998_3830490_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	NA	NA	NA	NA
AZS05620.1|3830508_3831465_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05621.1|3832875_3834978_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05622.1|3835148_3836192_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05623.1|3836235_3836979_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05624.1|3836995_3837751_-	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AZS05625.1|3838000_3838411_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZS05626.1|3839360_3840158_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZS05627.1|3840256_3841207_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05628.1|3841203_3842154_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05629.1|3842240_3843143_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05630.1|3843305_3844307_-	restriction endonuclease	NA	NA	NA	NA	NA
AZS05631.1|3844397_3844964_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZS05632.1|3845282_3847196_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AZS05633.1|3847237_3848668_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZS05634.1|3848780_3850193_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AZS05635.1|3850209_3850905_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05636.1|3851123_3852074_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05637.1|3852098_3852998_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AZS05638.1|3853152_3853701_+	GCN5 family acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
3853027:3853050	attR	GTGCCTGTCCCAGCGGGGACAGGC	NA	NA	NA	NA
AZS05639.1|3853739_3854459_-	7-cyano-7-deazaguanine synthase	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
3853027:3853050	attR	GTGCCTGTCCCAGCGGGGACAGGC	NA	NA	NA	NA
AZS05640.1|3854629_3857473_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZS05641.1|3858066_3860862_+	peptidase S8	NA	NA	NA	NA	NA
AZS05642.1|3861319_3862252_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZS05643.1|3862363_3863713_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZS05644.1|3863744_3864470_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZS06082.1|3864520_3865303_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05645.1|3865501_3866188_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZS05646.1|3866187_3866832_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZS05647.1|3866888_3867164_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZS05648.1|3867189_3867486_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05649.1|3867531_3868311_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZS06083.1|3868316_3869357_+	cyclase	NA	NA	NA	NA	NA
AZS05650.1|3869461_3869785_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AZS05651.1|3869941_3870844_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05652.1|3871505_3872474_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05653.1|3872502_3873714_-	formyl-CoA transferase	NA	NA	NA	NA	NA
AZS05654.1|3873783_3874524_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05655.1|3874668_3877533_-	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZS05656.1|3877592_3877967_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZS05657.1|3878048_3879149_-	glycine cleavage system protein T	NA	NA	NA	NA	NA
AZS05658.1|3879543_3880437_-	divalent cation transporter	NA	NA	NA	NA	NA
AZS05659.1|3880433_3881069_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AZS05660.1|3881171_3882074_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05661.1|3882220_3883426_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05662.1|3883501_3885772_-	lysine decarboxylase	NA	NA	NA	NA	NA
AZS06084.1|3885926_3886376_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05663.1|3886649_3886997_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05664.1|3887025_3887445_+	glyoxalase	NA	NA	NA	NA	NA
AZS05665.1|3887472_3887895_+	glyoxalase	NA	NA	NA	NA	NA
AZS05666.1|3887902_3888466_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZS05667.1|3888526_3892213_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05668.1|3892209_3894114_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05669.1|3894117_3895203_-	ATP-binding protein	NA	NA	NA	NA	NA
AZS05670.1|3895304_3895577_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05671.1|3895826_3897905_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZS05672.1|3897942_3898677_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05673.1|3898737_3899553_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05674.1|3899644_3900172_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05675.1|3901287_3902190_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS06085.1|3902444_3902921_+	bacterioferritin	NA	NA	NA	NA	NA
AZS05676.1|3903002_3903674_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05677.1|3903710_3905318_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZS05678.1|3905366_3905996_-	threonine transporter RhtB	NA	NA	NA	NA	NA
AZS05679.1|3906029_3907460_-	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AZS05680.1|3907742_3908372_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05681.1|3908349_3909252_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05682.1|3910695_3911646_+|integrase	integrase	integrase	NA	NA	NA	NA
3914128:3914145	attR	TCGGCGCGGCCGTCGCCG	NA	NA	NA	NA
>prophage 30
CP014211	Bordetella pertussis strain J377 chromosome, complete genome	4106512	4028683	4082067	4106512	integrase	Planktothrix_phage(40.0%)	45	4028577:4028594	4089520:4089537
4028577:4028594	attL	ATGATCTTCCAGGATCCG	NA	NA	NA	NA
AZS05791.1|4028683_4029634_-|integrase	integrase	integrase	NA	NA	NA	NA
AZS05792.1|4029803_4031030_+	ornithine acetyltransferase	NA	NA	NA	NA	NA
AZS05793.1|4031229_4032096_+	AAA family ATPase	NA	NA	NA	NA	NA
AZS05794.1|4032088_4033051_+	NUDIX hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZS05795.1|4033151_4034102_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05796.1|4034248_4035151_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05797.1|4035297_4036200_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05798.1|4036196_4037690_-	RND transporter	NA	NA	NA	NA	NA
AZS05799.1|4037686_4040794_-	multidrug transporter	NA	NA	NA	NA	NA
AZS05800.1|4040790_4043859_-	multidrug transporter	NA	NA	NA	NA	NA
AZS05801.1|4043855_4045106_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZS06093.1|4045286_4046039_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZS06094.1|4046080_4046725_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZS05802.1|4046733_4047573_-	peptidase A24	NA	NA	NA	NA	NA
AZS05803.1|4047813_4048557_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05804.1|4048639_4048987_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZS05805.1|4049084_4049927_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZS05806.1|4049971_4050859_-	segregation and condensation protein A	NA	NA	NA	NA	NA
AZS05807.1|4050885_4051074_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05808.1|4051171_4052629_+	MFS transporter	NA	NA	NA	NA	NA
AZS05809.1|4052615_4054142_+	glycerol kinase	NA	NA	NA	NA	NA
AZS05810.1|4054160_4054628_-	hypothetical protein	NA	NA	NA	NA	NA
AZS05811.1|4054627_4055650_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05812.1|4055770_4056511_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZS05813.1|4056565_4057666_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS05814.1|4057667_4058858_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZS05815.1|4058977_4059994_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZS05816.1|4060312_4060984_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZS05817.1|4060980_4061889_+	permease	NA	NA	NA	NA	NA
AZS05818.1|4062100_4062748_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
AZS06095.1|4066608_4067676_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZS05819.1|4067686_4068496_-	DNA-binding protein	NA	NA	NA	NA	NA
AZS05820.1|4068585_4069359_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZS05821.1|4069589_4070492_+|integrase	integrase	integrase	NA	NA	NA	NA
AZS05822.1|4070503_4071403_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05823.1|4071392_4072547_+	acyl-CoA transferase	NA	NA	NA	NA	NA
AZS05824.1|4072586_4073999_+	hypothetical protein	NA	NA	NA	NA	NA
AZS05825.1|4074021_4074990_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZS05826.1|4074991_4075816_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS05827.1|4075812_4076574_+	nitrobenzoate reductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
AZS05828.1|4076654_4077341_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZS05829.1|4077538_4078522_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZS05830.1|4078518_4079298_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZS06096.1|4079385_4080618_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AZS05831.1|4081164_4082067_-|integrase	integrase	integrase	NA	NA	NA	NA
4089520:4089537	attR	CGGATCCTGGAAGATCAT	NA	NA	NA	NA
