assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003994755.1_ASM399475v1	CP034721	Salmonella enterica subsp. enterica serovar Bareilly strain RSE03 chromosome, complete genome	2	596754-596995	1,2	PILER-CR,CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA,GGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATA	53,52	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|55aa|down_8|CP034721.1_609247_609412_-	NA|348aa|up_9|CP034721.1_585603_586647_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|CP034721.1_586690_588064_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|CP034721.1_588067_588352_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|CP034721.1_588382_588847_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|CP034721.1_588861_590133_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|CP034721.1_590252_591107_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|CP034721.1_591364_592936_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP034721.1_593465_594236_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP034721.1_594261_595152_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP034721.1_595249_596395_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|CP034721.1_597738_598677_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|CP034721.1_598774_599764_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|CP034721.1_599784_601116_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|CP034721.1_601182_602391_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|CP034721.1_602424_604719_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|CP034721.1_604788_606153_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|CP034721.1_606467_607799_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|CP034721.1_607824_609135_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|CP034721.1_609247_609412_-	NA	NA|234aa|down_9|CP034721.1_609435_610137_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCA_003994755.1_ASM399475v1	CP034721	Salmonella enterica subsp. enterica serovar Bareilly strain RSE03 chromosome, complete genome	3	907552-908372	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCNAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	12,13,13	13	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|367aa|up_9|CP034721.1_894919_896020_-,NA|57aa|down_1|CP034721.1_910008_910179_+	NA|367aa|up_9|CP034721.1_894919_896020_-	NA	NA|179aa|up_8|CP034721.1_896097_896634_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_7|CP034721.1_896630_897101_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_6|CP034721.1_897115_897622_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_5|CP034721.1_897641_898415_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|196aa|up_4|CP034721.1_901206_901794_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP034721.1_902401_903202_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034721.1_903429_905067_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034721.1_905149_906448_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034721.1_906583_907255_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|CP034721.1_909717_910080_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_1|CP034721.1_910008_910179_+	NA	NA|600aa|down_2|CP034721.1_910503_912303_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP034721.1_912302_914015_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|CP034721.1_914090_914825_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|CP034721.1_914912_915866_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|CP034721.1_916246_918946_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|CP034721.1_919302_920838_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|CP034721.1_920854_921457_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_9|CP034721.1_921473_922538_+	pfam09344, Cas_CT1975, CT1975-like protein
GCA_003994755.1_ASM399475v1	CP034721	Salmonella enterica subsp. enterica serovar Bareilly strain RSE03 chromosome, complete genome	4	908464-908736	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,4,4	4	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|367aa|up_9|CP034721.1_894919_896020_-,NA|57aa|down_1|CP034721.1_910008_910179_+	NA|367aa|up_9|CP034721.1_894919_896020_-	NA	NA|179aa|up_8|CP034721.1_896097_896634_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_7|CP034721.1_896630_897101_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_6|CP034721.1_897115_897622_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_5|CP034721.1_897641_898415_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|196aa|up_4|CP034721.1_901206_901794_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP034721.1_902401_903202_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034721.1_903429_905067_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034721.1_905149_906448_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034721.1_906583_907255_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|CP034721.1_909717_910080_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_1|CP034721.1_910008_910179_+	NA	NA|600aa|down_2|CP034721.1_910503_912303_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP034721.1_912302_914015_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|CP034721.1_914090_914825_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|CP034721.1_914912_915866_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|CP034721.1_916246_918946_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|CP034721.1_919302_920838_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|CP034721.1_920854_921457_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_9|CP034721.1_921473_922538_+	pfam09344, Cas_CT1975, CT1975-like protein
GCA_003994755.1_ASM399475v1	CP034721	Salmonella enterica subsp. enterica serovar Bareilly strain RSE03 chromosome, complete genome	5	925275-927299	5,3,6,7	CRISPRCasFinder,CRT,CRISPRCasFinder,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,NTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,26,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	29,33,29,29	33	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|CP034721.1_914090_914825_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP034721.1_914912_915866_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|CP034721.1_916246_918946_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|CP034721.1_919302_920838_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP034721.1_920854_921457_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP034721.1_921473_922538_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP034721.1_922547_923273_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP034721.1_923272_923977_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP034721.1_923976_924894_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034721.1_924896_925190_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034721.1_927313_928360_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034721.1_928610_929519_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034721.1_929528_930968_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034721.1_930954_931560_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP034721.1_931577_931934_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP034721.1_932124_932436_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP034721.1_932454_933165_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP034721.1_933164_933644_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP034721.1_933640_934690_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP034721.1_934670_935432_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
