The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	39780	51236	2038121		Synechococcus_phage(33.33%)	8	NA	NA
AZT86394.1|39780_41934_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	27.8	4.0e-44
AZT86395.1|41946_43296_+	multidrug transporter subunit MdtN	NA	NA	NA	NA	NA
AZT86396.1|43423_44173_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.4e-41
AZT88241.1|44174_44318_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
AZT86397.1|44374_48100_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.9	5.6e-38
AZT86398.1|48192_49635_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
AZT86399.1|49671_50694_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
AZT86400.1|50690_51236_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	115512	163495	2038121	bacteriocin,tRNA,transposase,protease	Staphylococcus_phage(33.33%)	49	NA	NA
AZT86459.1|115512_116634_+|tRNA	tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase	tRNA	NA	NA	NA	NA
AZT86460.1|116747_117230_+	Nudix family hydrolase	NA	NA	NA	NA	NA
AZT86461.1|117239_119153_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZT86462.1|119486_121166_-	ribonuclease J	NA	NA	NA	NA	NA
AZT86463.1|121167_121401_-	hypothetical protein	NA	NA	NA	NA	NA
AZT86464.1|121784_122006_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86465.1|122027_122225_-	hypothetical protein	NA	NA	NA	NA	NA
AZT86466.1|122218_122371_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AZT86467.1|122373_122559_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
AZT86468.1|122736_123420_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AZT86469.1|123416_123854_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AZT86470.1|123843_124854_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A291ATS8	Pandoravirus	36.9	5.6e-41
AZT86471.1|127460_128675_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZT86472.1|129325_130942_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
AZT86473.1|131202_131631_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86474.1|131636_132392_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
AZT86475.1|133971_134835_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZT86476.1|135120_135354_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86477.1|135375_136053_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZT86478.1|136064_136730_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZT86479.1|136798_138028_+	MFS transporter	NA	NA	NA	NA	NA
AZT86480.1|138210_139557_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	7.6e-78
AZT86481.1|139621_139804_-	hypothetical protein	NA	NA	NA	NA	NA
AZT86482.1|140189_140804_+	AzlC protein	NA	NA	NA	NA	NA
AZT86483.1|140907_141738_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZT86484.1|141959_142790_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZT86485.1|142943_143798_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZT86486.1|143897_145271_+	peptidase M20	NA	NA	NA	NA	NA
AZT86487.1|145263_146325_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
AZT86488.1|146326_147019_+	ABC transporter permease	NA	NA	NA	NA	NA
AZT86489.1|147048_147618_-	hypothetical protein	NA	NA	NA	NA	NA
AZT86490.1|147752_148367_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
AZT86491.1|148344_150015_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZT86492.1|150026_151313_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZT86493.1|151316_151898_+	ABC transporter permease	NA	NA	NA	NA	NA
AZT86494.1|151975_152446_+	ribonucleotide reductase assembly protein NrdI	NA	NA	NA	NA	NA
AZT88245.1|152471_152558_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
AZT86495.1|152738_154001_-	divalent metal cation transporter	NA	NA	NA	NA	NA
AZT86496.1|154310_154769_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
AZT86497.1|154765_155206_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZT86498.1|155445_155541_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86499.1|155561_157511_+	DNA mismatch repair protein HexB	NA	A0A1B2LRQ5	Wolbachia_phage	32.1	1.0e-70
AZT86500.1|157835_158303_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.6	3.7e-40
AZT88246.1|158303_159509_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.5	7.7e-106
AZT86501.1|159528_160164_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	46.9	1.3e-43
AZT86502.1|160148_161249_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.2	3.8e-51
AZT86503.1|161654_162248_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZT86504.1|162257_162821_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZT86505.1|162817_163495_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 3
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	166735	174905	2038121		Streptococcus_phage(75.0%)	12	NA	NA
AZT86509.1|166735_167902_-	tyrosine recombinase XerS	NA	A0A1X9I5Y5	Streptococcus_phage	69.8	1.6e-153
AZT86510.1|168235_169225_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	46.5	5.2e-76
AZT86511.1|169312_169948_-	XRE family transcriptional regulator	NA	Q708R9	Streptococcus_phage	47.6	1.1e-13
AZT86512.1|170100_170319_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZT86513.1|170332_170959_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	41.3	2.7e-30
AZT86514.1|171393_171792_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86515.1|171788_172004_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86516.1|172000_172342_+	DNA-binding protein	NA	NA	NA	NA	NA
AZT86517.1|172334_172616_+	transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	62.9	5.7e-28
AZT86518.1|172602_173400_+	DnaD domain protein	NA	A0A1L2JYQ3	Streptococcus_phage	65.0	4.7e-67
AZT86519.1|173415_174240_+	GTP-binding protein	NA	A0A1X9I6C4	Streptococcus_phage	37.7	1.1e-47
AZT86520.1|174371_174905_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	49.7	1.4e-38
>prophage 4
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	410271	454612	2038121	bacteriocin,tRNA,integrase	Only_Syngen_Nebraska_virus(20.0%)	41	407264:407282	443182:443200
407264:407282	attL	CTCAAAACAGTGTTTTGAG	NA	NA	NA	NA
AZT86742.1|410271_410775_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AZT86743.1|411227_411791_+	ECF transporter S component	NA	NA	NA	NA	NA
AZT86744.1|411780_412431_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZT86745.1|412458_412848_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
AZT86746.1|412852_413302_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZT86747.1|413414_414017_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AZT86748.1|414406_416014_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
AZT86749.1|416572_418204_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AZT86750.1|418496_423437_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
AZT86751.1|423526_424723_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZT86752.1|424858_425386_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
AZT86753.1|425462_425819_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZT86754.1|425855_427202_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZT86755.1|427291_427411_-	glutamine synthetase	NA	NA	NA	NA	NA
AZT86756.1|427375_427525_+	cell envelope	NA	NA	NA	NA	NA
AZT86757.1|429205_429811_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AZT86758.1|429821_430619_-|integrase	integrase	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
AZT86759.1|432239_433703_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
AZT86760.1|433715_436049_-	restriction endonuclease subunit R	NA	A0A097BY72	Enterococcus_phage	26.5	1.2e-25
AZT86761.1|436420_436621_+	hypothetical protein	NA	NA	NA	NA	NA
AZT86762.1|436655_437165_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
AZT86763.1|437328_438363_+	HrcA family transcriptional regulator	NA	NA	NA	NA	NA
AZT86764.1|438389_438914_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AZT86765.1|441216_441573_+|tRNA	tRNA (guanine-N7)-methyltransferase	tRNA	NA	NA	NA	NA
AZT86766.1|443127_443349_-	hypothetical protein	NA	NA	NA	NA	NA
443182:443200	attR	CTCAAAACAGTGTTTTGAG	NA	NA	NA	NA
AZT86767.1|443432_443720_-	hypothetical protein	NA	NA	NA	NA	NA
AZT86768.1|443729_444140_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	1.2e-05
AZT86769.1|444207_444939_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	1.1e-25
AZT86770.1|444935_445985_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
AZT86771.1|446152_446482_-	helicase BlpT	NA	NA	NA	NA	NA
AZT86772.1|446757_447096_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZT86773.1|447100_447838_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZT86774.1|447851_449192_+	ATP-binding protein	NA	NA	NA	NA	NA
AZT86775.1|449235_449391_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
AZT86776.1|449447_450809_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
AZT86777.1|452388_452976_-	Xaa-Pro dipeptidase	NA	NA	NA	NA	NA
AZT86778.1|453257_453455_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AZT86779.1|453459_453621_+	immunity protein	NA	NA	NA	NA	NA
AZT86780.1|453921_454191_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AZT86781.1|454259_454490_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AZT86782.1|454492_454612_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 5
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	795996	823766	2038121	integrase,transposase	Streptococcus_phage(82.61%)	31	795752:795773	823101:823122
795752:795773	attL	TATTCACAAAAGTTAGCTGAAA	NA	NA	NA	NA
AZT87079.1|795996_798183_+	radical SAM protein	NA	A0A1L7N0Q5	Ralstonia_phage	21.4	6.7e-07
AZT87080.1|798184_798451_+	CXXX repeat peptide modification system protein	NA	NA	NA	NA	NA
AZT87081.1|799782_799902_+	hypothetical protein	NA	NA	NA	NA	NA
AZT87082.1|799924_800239_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AZT87083.1|800254_800641_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AZT87084.1|800669_802055_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AZT87085.1|802057_802210_+	conjugal transfer protein	NA	NA	NA	NA	NA
AZT87086.1|802232_803651_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
AZT87087.1|803907_804645_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
AZT87088.1|804649_804781_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
AZT87089.1|804901_806149_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
AZT87090.1|806328_806550_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AZT87091.1|806666_807164_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AZT87092.1|807250_807643_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
AZT87093.1|807626_810074_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	98.4	0.0e+00
AZT87094.1|810076_812260_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	82.3	2.9e-305
AZT87095.1|812256_813258_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	99.7	5.5e-190
AZT87096.1|813254_814187_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AZT87097.1|814461_814548_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AZT87098.1|814563_816483_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	96.9	0.0e+00
AZT87099.1|816583_816769_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AZT87100.1|816828_817182_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AZT88266.1|817386_817458_+	hypothetical protein	NA	NA	NA	NA	NA
AZT87101.1|817686_818109_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AZT87102.1|818105_818336_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AZT87103.1|818561_818813_-	hypothetical protein	NA	NA	NA	NA	NA
AZT87104.1|818796_819000_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AZT87105.1|819081_820299_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.0	1.6e-231
AZT87106.1|821182_821911_+	hypothetical protein	NA	NA	NA	NA	NA
AZT87107.1|822067_822415_+	DUF3784 domain-containing protein	NA	NA	NA	NA	NA
AZT87108.1|823196_823766_+	hypothetical protein	NA	Q938J0	Temperate_phage	40.4	4.9e-34
823101:823122	attR	TATTCACAAAAGTTAGCTGAAA	NA	NA	NA	NA
>prophage 6
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	883831	895719	2038121		Streptococcus_phage(72.73%)	13	NA	NA
AZT87160.1|883831_884740_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	5.2e-06
AZT87161.1|884736_885198_+	signal peptidase II	NA	NA	NA	NA	NA
AZT87162.1|885187_886075_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.3e-09
AZT87163.1|886077_887961_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	23.7	9.5e-10
AZT87164.1|888040_889171_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.1	2.5e-114
AZT87165.1|889180_890443_+	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
AZT87166.1|890446_891244_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
AZT87167.1|891463_892102_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.7e-75
AZT87168.1|892098_892989_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
AZT87169.1|893028_893346_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
AZT87170.1|893348_894218_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	5.9e-116
AZT87171.1|894444_894963_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
AZT87172.1|895071_895719_+	hypothetical protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 7
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	1125672	1186104	2038121	protease,bacteriocin,holin,tRNA	Bacillus_phage(17.65%)	56	NA	NA
AZT87385.1|1125672_1125948_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZT87386.1|1126215_1127094_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AZT87387.1|1127103_1128378_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
AZT87388.1|1129880_1130678_-	formate-nitrite transporter	NA	NA	NA	NA	NA
AZT87389.1|1130921_1131665_-	sortase	NA	NA	NA	NA	NA
AZT87390.1|1131664_1134133_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
AZT87391.1|1134326_1135313_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AZT87392.1|1135575_1136349_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	47.1	4.0e-23
AZT87393.1|1136395_1136659_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AZT87394.1|1136651_1136954_-	antitoxin	NA	NA	NA	NA	NA
AZT87395.1|1136984_1137794_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
AZT87396.1|1137795_1139145_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
AZT87397.1|1139137_1139842_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
AZT87398.1|1139896_1141072_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZT87399.1|1141399_1143070_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
AZT87400.1|1143299_1143989_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
AZT87401.1|1144000_1144552_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	5.2e-25
AZT87402.1|1144535_1145099_+	ECF transporter S component	NA	NA	NA	NA	NA
AZT87403.1|1145380_1145908_+	hypothetical protein	NA	NA	NA	NA	NA
AZT87404.1|1145919_1146435_+	transcription repressor NadR	NA	NA	NA	NA	NA
AZT87405.1|1146431_1146899_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
AZT87406.1|1146970_1147459_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZT87407.1|1147424_1147988_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZT87408.1|1147997_1149986_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AZT87409.1|1150062_1151016_-|protease	CPBP family intramembrane metalloprotease domain-containing protein	protease	NA	NA	NA	NA
AZT87410.1|1151184_1153350_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZT87411.1|1153349_1154090_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	2.8e-18
AZT87412.1|1154238_1155726_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	33.1	1.0e-70
AZT87413.1|1155769_1157059_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
AZT87414.1|1157062_1157881_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AZT87415.1|1157880_1158675_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AZT87416.1|1158671_1162211_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZT87417.1|1162201_1162900_-	ribonuclease 3	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.0e-25
AZT87418.1|1163217_1164204_-	guanosine monophosphate reductase	NA	G3MBI2	Bacillus_virus	72.2	1.4e-137
AZT87419.1|1164378_1165695_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZT87420.1|1165681_1167598_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
AZT87421.1|1167760_1167931_-	hypothetical protein	NA	NA	NA	NA	NA
AZT87422.1|1167911_1168085_-	hypothetical protein	NA	NA	NA	NA	NA
AZT87423.1|1168546_1168906_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZT87424.1|1168909_1169179_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
AZT87425.1|1169175_1170213_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZT87426.1|1170224_1171319_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	38.9	3.1e-05
AZT87427.1|1171337_1171994_-	MmcQ family protein	NA	NA	NA	NA	NA
AZT87428.1|1172037_1172670_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AZT87429.1|1172762_1173122_-	DUF454 domain-containing protein	NA	NA	NA	NA	NA
AZT87430.1|1173342_1175430_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	5.1e-105
AZT87431.1|1175596_1176640_-	TIGR00341 family protein	NA	NA	NA	NA	NA
AZT87432.1|1177523_1178372_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
AZT87433.1|1178467_1179157_-|holin	CTP--phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
AZT87434.1|1179168_1180047_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZT87435.1|1180036_1180906_-|holin	choline kinase	holin	NA	NA	NA	NA
AZT87436.1|1180922_1181945_-	ribitol-5-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZT87437.1|1181949_1182657_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AZT87438.1|1182992_1184480_+	virulence factor MviN	NA	NA	NA	NA	NA
AZT87439.1|1184489_1185293_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
AZT87440.1|1185294_1186104_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	2.6e-09
>prophage 8
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	1298802	1304581	2038121		Streptococcus_phage(50.0%)	9	NA	NA
AZT87552.1|1298802_1299414_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
AZT87553.1|1299458_1300187_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AZT87554.1|1300225_1301137_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
AZT87555.1|1301202_1301439_-	DUF4059 domain-containing protein	NA	NA	NA	NA	NA
AZT87556.1|1301504_1302248_-	L-cystine ABC transporter ATP-binding protein YecC	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
AZT87557.1|1302247_1303048_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZT87558.1|1303205_1303562_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
AZT87559.1|1303574_1304087_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
AZT87560.1|1304086_1304581_-	N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.8	8.5e-43
>prophage 9
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	1395001	1401755	2038121	protease	Streptococcus_phage(50.0%)	9	NA	NA
AZT87643.1|1395001_1395970_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
AZT87644.1|1396003_1396915_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	2.6e-154
AZT87645.1|1396911_1397889_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
AZT87646.1|1397885_1398776_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
AZT87647.1|1398827_1399208_-	RidA family protein	NA	NA	NA	NA	NA
AZT87648.1|1399218_1399806_-	GTP-binding protein	NA	NA	NA	NA	NA
AZT87649.1|1399814_1401047_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
AZT87650.1|1401078_1401249_-	hypothetical protein	NA	NA	NA	NA	NA
AZT87651.1|1401248_1401755_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	41.9	1.1e-26
>prophage 10
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	1650680	1658012	2038121		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
AZT87893.1|1650680_1651382_+	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.1	1.7e-33
AZT87894.1|1651397_1651508_+	UDP-glucose 4-epimerase	NA	NA	NA	NA	NA
AZT87895.1|1651789_1652764_+	ferrichrome ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	1.8e-57
AZT87896.1|1652753_1653710_+	ferrichrome ABC transporter permease	NA	NA	NA	NA	NA
AZT87897.1|1653706_1654459_+	iron ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
AZT87898.1|1654554_1655520_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZT87899.1|1655744_1655987_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.7e-17
AZT87900.1|1655986_1656709_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZT87901.1|1656695_1657265_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
AZT87902.1|1657283_1658012_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 11
CP019299	Streptococcus pneumoniae strain HKU1-14 chromosome, complete genome	2038121	2015778	2024532	2038121		Bacillus_phage(33.33%)	9	NA	NA
AZT88217.1|2015778_2016618_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
AZT88218.1|2016602_2017430_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
AZT88219.1|2017426_2017972_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZT88220.1|2017982_2018813_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZT88221.1|2018845_2020129_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
AZT88222.1|2020125_2021376_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
AZT88223.1|2021534_2021903_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
AZT88224.1|2021905_2023003_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AZT88225.1|2023053_2024532_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
