assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003999665.1_ASM399966v1	CP021174	Listeria monocytogenes strain FORC_057 chromosome, complete genome	1	526532-527210	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	1	1	527082-527117	CP021174.1_1271560-1271595	I-A:I-A:I-A	10,10,10	10	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|133aa|up_5|CP021174.1_521521_521920_+,NA|193aa|down_0|CP021174.1_527601_528180_+	NA|217aa|up_9|CP021174.1_517584_518235_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|CP021174.1_518343_520404_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|CP021174.1_520407_521010_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|CP021174.1_521037_521505_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|CP021174.1_521521_521920_+	NA	NA|217aa|up_4|CP021174.1_521930_522581_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|CP021174.1_522577_523624_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|CP021174.1_523639_523933_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|CP021174.1_523947_525219_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|CP021174.1_525358_526294_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|CP021174.1_527601_528180_+	NA	NA|227aa|down_1|CP021174.1_528286_528967_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|121aa|down_2|CP021174.1_528991_529354_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|CP021174.1_529357_529816_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|CP021174.1_530197_532033_+	NF033186, internalin_K, class 1 internalin InlK	NA|145aa|down_5|CP021174.1_532130_532565_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|CP021174.1_532611_534042_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|CP021174.1_534162_534978_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|CP021174.1_535330_536053_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|CP021174.1_536068_537757_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCA_003999665.1_ASM399966v1	CP021174	Listeria monocytogenes strain FORC_057 chromosome, complete genome	2	543636-547439	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	3	3	544643-544680|544710-544746|545364-545400	CP021174.1_2383676-2383639|CP021174.1_1284029-1284065|CP021174.1_2417881-2417845	I-A:I-A:I-A	57,58,58	58	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|148aa|down_5|CP021174.1_552986_553430_+,NA|492aa|down_9|CP021174.1_557739_559215_+	NA|477aa|up_9|CP021174.1_532611_534042_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|CP021174.1_534162_534978_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|CP021174.1_535330_536053_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|CP021174.1_536068_537757_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|CP021174.1_537746_538616_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|CP021174.1_538593_539376_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|CP021174.1_539443_541651_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|137aa|up_2|CP021174.1_541742_542153_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|CP021174.1_542156_543155_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|CP021174.1_543159_543438_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|CP021174.1_547511_547880_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|CP021174.1_548026_549442_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|336aa|down_2|CP021174.1_549570_550578_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|CP021174.1_550609_551926_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|CP021174.1_552127_552880_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|CP021174.1_552986_553430_+	NA	NA|554aa|down_6|CP021174.1_553475_555137_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|CP021174.1_555393_556725_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|CP021174.1_556769_557510_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|CP021174.1_557739_559215_+	NA
GCA_003999665.1_ASM399966v1	CP021174	Listeria monocytogenes strain FORC_057 chromosome, complete genome	3	2543963-2544124	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|140aa|up_7|CP021174.1_2529250_2529670_-,NA|56aa|down_3|CP021174.1_2546309_2546477_-	WYL|299aa|up_9|CP021174.1_2527564_2528461_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|CP021174.1_2528505_2529075_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|CP021174.1_2529250_2529670_-	NA	NA|1312aa|up_6|CP021174.1_2530619_2534555_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|CP021174.1_2534566_2535511_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|CP021174.1_2535570_2538846_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|CP021174.1_2539229_2540138_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|CP021174.1_2540193_2540658_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|CP021174.1_2540673_2543055_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|CP021174.1_2543088_2543835_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|CP021174.1_2544198_2544432_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|CP021174.1_2544531_2545275_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|CP021174.1_2545457_2546177_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|56aa|down_3|CP021174.1_2546309_2546477_-	NA	NA|431aa|down_4|CP021174.1_2546585_2547878_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|CP021174.1_2548013_2549546_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|CP021174.1_2549547_2550303_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|CP021174.1_2550348_2551539_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|CP021174.1_2551673_2552684_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|CP021174.1_2552715_2553762_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCA_003999665.1_ASM399966v1	CP021174	Listeria monocytogenes strain FORC_057 chromosome, complete genome	4	2808962-2809072	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|74aa|down_2|CP021174.1_2809841_2810063_-,NA|52aa|down_4|CP021174.1_2812003_2812159_+,NA|214aa|down_5|CP021174.1_2812730_2813372_-	NA|330aa|up_9|CP021174.1_2800887_2801877_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|CP021174.1_2801898_2802495_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|CP021174.1_2802498_2802873_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|CP021174.1_2802978_2803830_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|CP021174.1_2803948_2804788_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|CP021174.1_2804908_2805751_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|CP021174.1_2805796_2806042_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|CP021174.1_2806056_2806653_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|CP021174.1_2806761_2807079_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|CP021174.1_2807108_2808848_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|CP021174.1_2809174_2809639_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|CP021174.1_2809656_2809839_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|CP021174.1_2809841_2810063_-	NA	NA|455aa|down_3|CP021174.1_2810197_2811562_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|CP021174.1_2812003_2812159_+	NA	NA|214aa|down_5|CP021174.1_2812730_2813372_-	NA	NA|498aa|down_6|CP021174.1_2814069_2815563_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|CP021174.1_2815699_2816638_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|CP021174.1_2816680_2817628_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|CP021174.1_2817769_2819509_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
