The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	0	65102	4111426	transposase,protease,tRNA	Natrialba_phage(12.5%)	57	NA	NA
AZV84720.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZV84721.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AZV84722.1|2605_3403_+	chromosome partitioning protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZV84723.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZV84724.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZV84725.1|5124_5910_+	L-asparaginase	NA	NA	NA	NA	NA
AZV84726.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84727.1|6721_7912_+	translation elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZV84728.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZV84729.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZV84730.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZV84731.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZV84732.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZV84733.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZV84734.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZV84735.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZV88003.1|20126_20531_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84736.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84737.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84738.1|25400_26507_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZV88004.1|27623_28334_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84739.1|28330_29200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84740.1|29362_29662_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84741.1|29722_30157_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88005.1|30189_31407_-	thiolase	NA	NA	NA	NA	NA
AZV84742.1|31412_31910_-	dehydratase	NA	NA	NA	NA	NA
AZV84743.1|32117_33053_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84744.1|33262_34054_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV84745.1|34096_35518_+	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
AZV84746.1|35754_36624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84747.1|36620_37811_-	MFS transporter	NA	NA	NA	NA	NA
AZV84748.1|38060_38972_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZV84749.1|38973_41112_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZV84750.1|41108_41648_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZV84751.1|41651_42380_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZV84752.1|42366_43260_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84753.1|43330_43726_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZV84754.1|43735_44266_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZV84755.1|44394_44574_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88006.1|46271_46796_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84756.1|46767_47004_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZV84757.1|47131_48025_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84758.1|49194_50442_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZV84759.1|50438_51053_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZV84760.1|51269_52139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84761.1|52181_53438_+	muropeptide transporter AmpG	NA	NA	NA	NA	NA
AZV84762.1|54669_55404_-	glutamate racemase	NA	NA	NA	NA	NA
AZV84763.1|55409_56000_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZV84764.1|56024_56714_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV84765.1|56710_57472_-	glutamate ABC transporter permease	NA	NA	NA	NA	NA
AZV84766.1|57551_58451_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV84767.1|58544_59495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84768.1|60295_61522_-	serine kinase HipA	NA	NA	NA	NA	NA
AZV84769.1|61521_61941_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV88007.1|62124_63066_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84770.1|63489_64464_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84771.1|64520_65102_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	70213	123119	4111426	transposase,tRNA	Planktothrix_phage(20.0%)	52	NA	NA
AZV84776.1|70213_71083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84777.1|71176_71491_+|transposase	transposase	transposase	NA	NA	NA	NA
AZV84778.1|72683_74591_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZV84779.1|74752_75373_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZV84780.1|75404_75986_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZV84781.1|76074_76326_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84782.1|76327_77170_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84783.1|77275_78685_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZV88009.1|79705_80650_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84784.1|80646_82521_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZV84785.1|83868_84573_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AZV84786.1|84569_85676_-	glycosyl transferase	NA	NA	NA	NA	NA
AZV84787.1|85937_86531_-	sugar transferase	NA	NA	NA	NA	NA
AZV84788.1|86527_87715_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZV84789.1|87777_89037_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZV84790.1|89060_90149_-	UDP-N-acetylglucosamine 2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZV84791.1|90156_91257_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZV84792.1|91260_91836_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZV84793.1|91839_92892_-	oxidoreductase	NA	NA	NA	NA	NA
AZV84794.1|93022_94030_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZV84795.1|94031_95318_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZV84796.1|95334_95490_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84797.1|95514_96318_-	pantothenate kinase	NA	NA	NA	NA	NA
AZV84798.1|96314_97181_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZV84799.1|97255_98386_+	ABC transporter permease	NA	NA	NA	NA	NA
AZV84800.1|98385_99225_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZV88010.1|99378_99846_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84801.1|99935_100157_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84802.1|100157_100760_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84803.1|100789_101443_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZV88011.1|101653_102832_+	peptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	5.8e-66
AZV84804.1|102912_103779_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZV84805.1|103854_104130_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZV84806.1|104137_104800_+	octanoyltransferase	NA	NA	NA	NA	NA
AZV84807.1|104861_105863_+	lipoyl synthase	NA	NA	NA	NA	NA
AZV84808.1|105877_106426_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZV84809.1|106483_107380_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZV84810.1|107376_108438_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZV84811.1|108473_109343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84812.1|110323_111517_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZV84813.1|111598_112228_-	thiol:disulfide interchange protein	NA	NA	NA	NA	NA
AZV84814.1|112289_112973_-	cell division protein	NA	NA	NA	NA	NA
AZV84815.1|112982_114665_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZV88012.1|114952_115300_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84816.1|115390_115708_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84817.1|115990_117007_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV84818.1|117082_117883_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV84819.1|117879_118755_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV84820.1|118765_120058_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV84821.1|120100_121141_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZV84822.1|121246_122068_-	phosphodiesterase	NA	NA	NA	NA	NA
AZV84823.1|122168_123119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	165936	304055	4111426	transposase,protease,tRNA	Klosneuvirus(10.53%)	116	NA	NA
AZV84857.1|165936_166887_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84858.1|168330_169233_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84859.1|169210_169840_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84860.1|170122_171553_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
AZV84861.1|171586_172216_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZV84862.1|172264_173872_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZV84863.1|173908_174580_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88015.1|174661_175138_-	bacterioferritin	NA	NA	NA	NA	NA
AZV84864.1|175425_176295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84865.1|177410_177938_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84866.1|178903_179638_+	sulfurtransferase	NA	NA	NA	NA	NA
AZV84867.1|179675_181754_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZV84868.1|182003_182276_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84869.1|182377_183463_+	ATP-binding protein	NA	NA	NA	NA	NA
AZV84870.1|183466_185371_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84871.1|189100_189664_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZV84872.1|189671_190094_-	glyoxalase	NA	NA	NA	NA	NA
AZV84873.1|190121_190541_-	glyoxalase	NA	NA	NA	NA	NA
AZV84874.1|190569_190917_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZV88016.1|191190_191640_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84875.1|191793_194064_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZV84876.1|194139_195345_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84877.1|196495_197131_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
AZV84878.1|197127_198021_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZV84879.1|198415_199516_+	glycine cleavage system protein T	NA	NA	NA	NA	NA
AZV84880.1|199597_199972_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZV84881.1|200030_202895_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZV84882.1|203039_203780_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84883.1|203849_205061_+	formyl-CoA transferase	NA	NA	NA	NA	NA
AZV84884.1|205089_206058_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84885.1|206752_207622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84886.1|207778_208102_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZV88017.1|208206_209247_-	cyclase	NA	NA	NA	NA	NA
AZV84887.1|209252_210032_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZV84888.1|210077_210374_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84889.1|210399_210675_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZV84890.1|210731_211376_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZV84891.1|211375_212062_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZV88018.1|212260_213043_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84892.1|213093_213819_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV84893.1|213850_215200_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZV84894.1|215311_216244_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV84895.1|216701_219497_-	peptidase S8	NA	NA	NA	NA	NA
AZV84896.1|220090_222934_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZV84897.1|223104_223824_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZV84898.1|223862_224411_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZV84899.1|224565_225465_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZV84900.1|225489_226440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84901.1|226658_227354_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84902.1|227370_228783_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AZV84903.1|228895_230326_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZV84904.1|230367_232281_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AZV84905.1|232599_233166_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZV84906.1|233256_234258_+	restriction endonuclease	NA	NA	NA	NA	NA
AZV84907.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84908.1|235408_236359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84909.1|236355_237306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84910.1|237404_238202_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZV84911.1|239151_239562_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZV84912.1|239811_240567_+	gamma-hydroxybutyrate dehydrogenase	NA	D2K0C8	Staphylococcus_phage	55.0	4.6e-32
AZV84913.1|240583_241327_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84914.1|241370_242414_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV88019.1|243427_244687_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84915.1|246097_247054_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84916.1|247072_247564_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZV84917.1|247560_248916_-	poly(A) polymerase	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZV84918.1|248916_249615_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84919.1|249611_250313_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZV84920.1|250565_251615_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZV84921.1|251720_252662_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZV84922.1|252658_254548_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZV88020.1|254652_255273_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84923.1|255415_256801_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
AZV84924.1|256731_257268_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZV84925.1|257419_258811_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AZV84926.1|258827_259808_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84927.1|259943_260927_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV84928.1|260991_261891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84929.1|261997_263752_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZV84930.1|263759_264884_-	carnitine dehydratase	NA	NA	NA	NA	NA
AZV84931.1|264897_265878_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV84932.1|266689_267559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84933.1|267573_267945_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84934.1|268118_268664_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84935.1|268789_270367_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA	NA
AZV84936.1|270382_271537_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZV84937.1|271550_271676_+	cyd operon protein YbgT	NA	NA	NA	NA	NA
AZV84938.1|271672_273424_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZV84939.1|273420_275100_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZV84940.1|275162_275711_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
AZV84941.1|276853_277132_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84942.1|278175_279126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84943.1|279403_279565_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZV84944.1|279572_279713_+	hypothetical protein	NA	NA	NA	NA	NA
AZV84945.1|280231_280681_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZV84946.1|280690_281302_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZV88021.1|281460_282309_-	cytochrome c1	NA	NA	NA	NA	NA
AZV84947.1|282334_283717_-	cytochrome b	NA	NA	NA	NA	NA
AZV84948.1|283781_284423_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZV84949.1|284562_285021_+	large-conductance mechanosensitive channel protein	NA	NA	NA	NA	NA
AZV84950.1|285045_285822_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZV84951.1|285875_287012_+	2-alkenal reductase	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZV84952.1|287008_287959_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV84953.1|288057_288684_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84954.1|288706_289633_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZV84955.1|289641_291228_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV84956.1|291224_292229_-	acetylesterase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZV84957.1|292428_293289_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZV84958.1|293320_294322_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84959.1|294392_295202_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZV84960.1|295279_297139_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZV84961.1|297267_298470_-	MFS transporter	NA	NA	NA	NA	NA
AZV84962.1|298583_299465_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV84963.1|300967_301528_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZV84964.1|302728_302989_-	hypothetical protein	NA	NA	NA	NA	NA
AZV84965.1|303104_304055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	391888	449394	4111426	transposase	Orpheovirus(14.29%)	50	NA	NA
AZV85049.1|391888_392839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88027.1|392981_393893_+	reductase	NA	NA	NA	NA	NA
AZV85050.1|393889_394138_+	NrdH-redoxin	NA	NA	NA	NA	NA
AZV85051.1|394134_395340_+	CoA transferase	NA	NA	NA	NA	NA
AZV85052.1|395412_396408_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85053.1|396430_397651_-	acyl-CoA transferase	NA	NA	NA	NA	NA
AZV85054.1|397647_398292_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88028.1|398288_398681_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85055.1|398991_399981_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85056.1|400021_400831_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85057.1|401135_402089_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
AZV85058.1|402186_403170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85059.1|403846_404617_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV85060.1|404613_405792_-	carnitine dehydratase	NA	NA	NA	NA	NA
AZV85061.1|405959_407666_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZV85062.1|407662_408559_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85063.1|408599_410189_-	sulfurtransferase	NA	NA	NA	NA	NA
AZV85064.1|410238_411231_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85065.1|411299_411899_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85066.1|412359_413340_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85067.1|413415_414285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85068.1|414454_415369_+	EamA family transporter	NA	NA	NA	NA	NA
AZV85069.1|415365_416025_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85070.1|416114_417038_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZV85071.1|417043_417499_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85072.1|417495_418599_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85073.1|418786_420406_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA	NA
AZV85074.1|420402_421461_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZV85075.1|421590_422085_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZV85076.1|422177_423155_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85077.1|423350_424556_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZV85078.1|424552_426064_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV88029.1|426079_427393_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZV85079.1|427583_427763_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85080.1|428172_428907_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZV85081.1|431431_432301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85082.1|432432_432831_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZV85083.1|433241_433712_-	universal stress protein	NA	NA	NA	NA	NA
AZV85084.1|433800_434145_-	TIGR01244 family protein	NA	NA	NA	NA	NA
AZV85085.1|434244_435645_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85086.1|437433_437952_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZV85087.1|438062_438818_+	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZV85088.1|439013_440246_+	CoA transferase	NA	NA	NA	NA	NA
AZV85089.1|440238_441024_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV85090.1|441090_442062_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85091.1|442072_443050_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85092.1|443175_444348_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV85093.1|444374_445403_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV85094.1|445468_446662_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZV85095.1|448443_449394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	637813	737924	4111426	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	106	NA	NA
AZV85257.1|637813_638764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85258.1|638862_639663_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85259.1|639724_640108_+	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AZV85260.1|640119_641553_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZV85261.1|641759_642089_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85262.1|642091_642841_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85263.1|643023_643944_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AZV85264.1|643990_644203_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85265.1|644225_644648_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZV85266.1|644664_645765_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZV85267.1|645861_647379_-	peptidase	NA	NA	NA	NA	NA
AZV85268.1|647454_648294_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZV88039.1|648315_649188_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85269.1|649278_650373_-	porin	NA	NA	NA	NA	NA
AZV85270.1|650666_651536_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88040.1|651691_652633_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85271.1|652716_653076_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85272.1|653457_654495_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85273.1|654811_656152_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
AZV85274.1|656161_656614_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85275.1|656719_657892_+	monooxygenase	NA	NA	NA	NA	NA
AZV88041.1|657957_658983_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZV85276.1|659023_659263_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZV85277.1|659332_660922_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZV85278.1|660921_661470_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZV85279.1|661550_662123_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA	NA
AZV85280.1|662141_663053_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AZV85281.1|663126_664095_-	serine dehydratase	NA	NA	NA	NA	NA
AZV85282.1|664217_665291_+	Holliday junction DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZV85283.1|665295_667116_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZV85284.1|668230_668566_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85285.1|668699_669350_+	carbonate dehydratase	NA	NA	NA	NA	NA
AZV88042.1|669371_670790_-	amidase	NA	NA	NA	NA	NA
AZV85286.1|670859_671615_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88043.1|671583_672342_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV85287.1|672352_673234_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV85288.1|673250_673958_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZV85289.1|673960_674719_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZV85290.1|674928_676671_+	sulfite reductase	NA	NA	NA	NA	NA
AZV85291.1|676663_677188_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85292.1|677227_678022_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85293.1|678189_679263_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85294.1|679361_680312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85295.1|680563_680770_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88044.1|680841_681453_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZV85296.1|681932_682253_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85297.1|682245_682944_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85298.1|682958_683180_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85299.1|683197_684148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85300.1|684787_685273_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
AZV85301.1|685259_686537_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZV85302.1|686539_687958_+	hypothetical protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZV85303.1|687929_689042_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	49.7	2.1e-102
AZV85304.1|689047_689290_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZV85305.1|689412_690015_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZV85306.1|690443_691394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85307.1|692068_692320_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85308.1|692382_692865_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZV85309.1|692866_693067_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85310.1|693066_693462_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZV85311.1|693458_693857_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZV85312.1|693853_694276_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85313.1|694283_694784_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZV85314.1|695038_695557_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZV85315.1|695566_695896_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZV85316.1|695913_696204_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZV85317.1|696229_698842_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZV85318.1|698851_699211_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85319.1|699278_699812_+	hypothetical protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZV85320.1|699808_700198_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZV85321.1|700190_704147_+	hypothetical protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZV85322.1|704151_704568_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85323.1|704786_705050_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZV85324.1|705049_705862_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85325.1|705866_706109_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85326.1|706087_706639_+	lysozyme	NA	NA	NA	NA	NA
AZV85327.1|706638_707154_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88045.1|707150_707432_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85328.1|707431_707653_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85329.1|707981_708653_-	hypothetical protein	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZV85330.1|708580_708949_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88046.1|709008_709695_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZV85331.1|709675_710248_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZV85332.1|710313_712044_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZV85333.1|712096_712525_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZV85334.1|712527_713208_+	protein TolQ	NA	NA	NA	NA	NA
AZV85335.1|713207_713666_+	protein TolR	NA	NA	NA	NA	NA
AZV85336.1|714692_716009_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
AZV85337.1|716040_716538_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA	NA
AZV85338.1|716624_717314_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZV85339.1|717313_718363_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA	NA
AZV85340.1|718359_719154_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZV85341.1|719322_719673_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85342.1|719648_720206_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85343.1|721335_722286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85344.1|724423_725653_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85345.1|725655_727098_-	pyruvate kinase	NA	NA	NA	NA	NA
AZV85346.1|727202_728348_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZV85347.1|728379_729177_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	NA	NA	NA	NA	NA
AZV85348.1|729201_730761_-	molecular chaperone SurA	NA	NA	NA	NA	NA
AZV88047.1|730757_733124_-	LPS biosynthesis protein	NA	NA	NA	NA	NA
AZV88048.1|733302_734343_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZV85349.1|734342_735035_+	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AZV85350.1|735178_735880_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85351.1|735864_736242_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZV85352.1|736973_737924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	860810	914939	4111426	transposase,holin	Vibrio_phage(25.0%)	43	NA	NA
AZV85447.1|860810_862769_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZV85448.1|862851_863802_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85449.1|864022_864691_+	transcriptional regulator	NA	NA	NA	NA	NA
AZV85450.1|864814_865921_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZV85451.1|865933_869047_+	multidrug efflux protein	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZV85452.1|869043_870537_+	RND transporter	NA	NA	NA	NA	NA
AZV85453.1|870551_871223_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZV88057.1|871266_871719_-	azurin	NA	NA	NA	NA	NA
AZV85454.1|871901_872549_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV88058.1|872652_874701_+	hydantoinase	NA	NA	NA	NA	NA
AZV85455.1|874697_876710_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZV88059.1|876735_878070_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85456.1|878178_879171_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85457.1|879237_881322_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZV85458.1|881346_882318_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85459.1|882446_883448_-	peptidase M14	NA	NA	NA	NA	NA
AZV85460.1|883481_884633_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZV85461.1|884836_885727_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85462.1|885804_886629_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZV85463.1|886825_887842_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85464.1|888038_889022_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV88060.1|889080_890208_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZV85465.1|890198_890573_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85466.1|890620_892009_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85467.1|892039_893029_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85468.1|894652_895453_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85469.1|895475_897707_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZV85470.1|898494_898941_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZV85471.1|898962_899709_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZV85472.1|899852_900830_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZV85473.1|901463_902075_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZV85474.1|902068_903286_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZV85475.1|903425_904376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85476.1|904372_905092_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85477.1|905212_907372_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZV85478.1|907462_907732_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZV85479.1|908025_908553_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85480.1|908571_909351_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZV85481.1|909518_910535_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZV85482.1|910607_911099_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZV85483.1|911109_912825_-	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZV85484.1|913301_913907_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85485.1|913988_914939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	953847	1027308	4111426	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZV85518.1|953847_954798_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85519.1|954794_955769_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88062.1|955914_956805_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.3e-05
AZV88063.1|957081_957474_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZV85520.1|957603_958554_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85521.1|958583_958766_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZV85522.1|959538_960720_-	MFS transporter	NA	NA	NA	NA	NA
AZV85523.1|960934_961612_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZV85524.1|961608_962334_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA	NA
AZV85525.1|962459_963041_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85526.1|963411_966093_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZV88064.1|966095_967226_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
AZV85527.1|967218_968304_+	chorismate mutase	NA	NA	NA	NA	NA
AZV85528.1|968390_969290_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
AZV85529.1|969286_970615_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZV85530.1|970629_971301_+	cytidylate kinase	NA	NA	NA	NA	NA
AZV85531.1|971488_973204_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZV85532.1|973205_973565_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZV85533.1|973756_974071_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85534.1|974113_975334_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZV85535.1|975330_976272_+	hypothetical protein	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZV85536.1|976268_977258_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZV88065.1|977547_977877_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85537.1|979005_979917_+	cysteine synthase B	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZV85538.1|979977_981123_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZV85539.1|981142_982057_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZV85540.1|982128_982878_+	electron transporter RnfB	NA	NA	NA	NA	NA
AZV85541.1|984049_985876_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV85542.1|985958_986600_+	peroxidase	NA	NA	NA	NA	NA
AZV85543.1|986789_987824_+	sulfate transporter subunit	NA	NA	NA	NA	NA
AZV85544.1|987839_988049_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85545.1|988070_988745_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
AZV85546.1|988859_989642_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AZV85547.1|989666_990731_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZV88066.1|991528_992437_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA	NA
AZV88067.1|993924_995199_+	radical SAM protein	NA	NA	NA	NA	NA
AZV85548.1|995352_995733_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85549.1|995740_996613_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZV85550.1|996918_997299_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZV85551.1|997548_998235_+	coenzyme A pyrophosphatase	NA	NA	NA	NA	NA
AZV85552.1|998330_999200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85553.1|999385_1000435_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZV85554.1|1000572_1001589_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85555.1|1003097_1003670_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZV85556.1|1003729_1004461_+	pseudouridylate synthase	NA	NA	NA	NA	NA
AZV88068.1|1004512_1005430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85557.1|1006237_1009417_+	multidrug efflux RND transporter permease	NA	NA	NA	NA	NA
AZV85558.1|1010861_1011113_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85559.1|1011258_1011873_-	SCO family protein	NA	NA	NA	NA	NA
AZV85560.1|1012059_1014120_-	oligopeptidase A	NA	NA	NA	NA	NA
AZV85561.1|1014249_1015101_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZV85562.1|1015097_1015724_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZV85563.1|1015720_1017475_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZV85564.1|1017767_1020473_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZV85565.1|1020485_1022147_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZV85566.1|1022159_1023950_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZV85567.1|1024171_1025347_-	flagellin	NA	NA	NA	NA	NA
AZV85568.1|1025389_1026259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85569.1|1026438_1027308_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	1048340	1099001	4111426	transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
AZV85587.1|1048340_1049291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85588.1|1049589_1050327_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZV85589.1|1050762_1051086_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZV85590.1|1051120_1051681_+	transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZV85591.1|1051801_1052677_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZV85592.1|1052689_1053637_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
AZV85593.1|1053738_1054032_+	two-component system response regulator	NA	NA	NA	NA	NA
AZV85594.1|1054058_1056116_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZV85595.1|1056130_1056631_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZV85596.1|1056704_1058411_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZV85597.1|1059274_1060327_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZV85598.1|1060379_1060769_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZV85599.1|1060777_1061410_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZV85600.1|1061509_1062526_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV88071.1|1063356_1064364_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZV85601.1|1064360_1066004_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZV85602.1|1066000_1066888_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZV85603.1|1067028_1067502_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AZV85604.1|1067491_1068514_-	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZV85605.1|1068510_1069938_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZV85606.1|1070875_1071892_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85607.1|1072224_1073160_-	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZV85608.1|1073209_1075090_-	protein-export membrane protein SecD	NA	NA	NA	NA	NA
AZV85609.1|1075156_1075501_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZV85610.1|1075645_1076782_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZV85611.1|1076778_1077852_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AZV85612.1|1078009_1079446_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZV88072.1|1079536_1080178_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZV85613.1|1080513_1081530_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85614.1|1083470_1084421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88073.1|1085724_1087146_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AZV88074.1|1087412_1088126_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85615.1|1088210_1088528_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85616.1|1088568_1088982_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85617.1|1088983_1089343_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85618.1|1089385_1090930_-	3-octaprenyl-4-hydroxybenzoate decarboxylase	NA	NA	NA	NA	NA
AZV85619.1|1091013_1091844_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZV85620.1|1091878_1093033_-	aminotransferase	NA	NA	NA	NA	NA
AZV85621.1|1093075_1093948_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85622.1|1094064_1096353_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZV85623.1|1097559_1098024_+	barstar family protein 2	NA	NA	NA	NA	NA
AZV85624.1|1098050_1099001_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	1382370	1448869	4111426	transposase	uncultured_Caudovirales_phage(40.0%)	57	NA	NA
AZV85834.1|1382370_1383321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85835.1|1383386_1383566_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85836.1|1383682_1384438_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZV85837.1|1384424_1385570_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85838.1|1386477_1387428_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85839.1|1387418_1387619_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85840.1|1387615_1388818_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AZV85841.1|1388814_1389573_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85842.1|1389966_1390599_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85843.1|1391554_1394155_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZV85844.1|1394142_1397562_-	nuclease	NA	NA	NA	NA	NA
AZV85845.1|1397569_1398475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85846.1|1398613_1399192_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
AZV85847.1|1399188_1400100_+	CoA ester lyase	NA	NA	NA	NA	NA
AZV88097.1|1400113_1400794_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85848.1|1400995_1403035_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZV85849.1|1403053_1404040_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85850.1|1404065_1404863_+	citryl-CoA lyase	NA	NA	NA	NA	NA
AZV85851.1|1404859_1406053_+	CoA transferase	NA	NA	NA	NA	NA
AZV85852.1|1406049_1407012_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85853.1|1407029_1408070_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZV85854.1|1408057_1408666_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZV85855.1|1410254_1411250_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85856.1|1411269_1412448_+	mandelate racemase	NA	NA	NA	NA	NA
AZV85857.1|1412458_1413376_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZV85858.1|1413431_1414382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85859.1|1414480_1415251_-	ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZV85860.1|1415247_1415928_-	cysteine ABC transporter permease	NA	NA	NA	NA	NA
AZV85861.1|1415994_1416783_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85862.1|1417029_1418046_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85863.1|1418351_1419506_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZV85864.1|1424011_1424494_-	flagellar protein FlgN	NA	NA	NA	NA	NA
AZV85865.1|1424511_1424802_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZV85866.1|1425821_1426229_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZV85867.1|1426241_1426661_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZV85868.1|1426708_1427413_+	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZV85869.1|1427478_1428900_+	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZV85870.1|1428938_1429703_+	flagellar biosynthesis protein FlgF	NA	NA	NA	NA	NA
AZV85871.1|1429746_1430532_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZV85872.1|1430531_1431221_+	flagellar basal body L-ring protein	NA	NA	NA	NA	NA
AZV85873.1|1431223_1432357_+	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZV85874.1|1432374_1433397_+	flagellar rod assembly protein/muramidase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZV85875.1|1433466_1435113_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZV85876.1|1435146_1436679_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZV85877.1|1436757_1438578_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZV85878.1|1438698_1440318_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZV85879.1|1440496_1441939_+	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZV85880.1|1442155_1443172_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV85881.1|1443218_1444007_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZV85882.1|1444029_1444299_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZV88098.1|1444315_1445050_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZV85883.1|1445118_1445460_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZV85884.1|1445470_1445971_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZV85885.1|1445963_1446974_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZV85886.1|1446976_1447549_-	flagellar basal body protein FliL	NA	NA	NA	NA	NA
AZV85887.1|1447690_1447903_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88099.1|1447918_1448869_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	1491146	1616112	4111426	transposase,protease,tRNA	Planktothrix_phage(19.05%)	112	NA	NA
AZV85926.1|1491146_1492097_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85927.1|1492214_1493141_+	paraslipin	NA	NA	NA	NA	NA
AZV85928.1|1493206_1494364_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZV85929.1|1494344_1494812_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZV85930.1|1494959_1495910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85931.1|1495926_1496361_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZV85932.1|1496350_1496701_+	RnfH family protein	NA	NA	NA	NA	NA
AZV85933.1|1496897_1498052_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV85934.1|1498048_1499221_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV85935.1|1499268_1500162_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZV85936.1|1500207_1500645_+	thioesterase	NA	NA	NA	NA	NA
AZV85937.1|1500704_1501394_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85938.1|1502450_1503401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85939.1|1503499_1504462_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
AZV85940.1|1504688_1505843_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
AZV85941.1|1505853_1509096_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AZV85942.1|1510117_1510762_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZV85943.1|1510772_1511672_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85944.1|1511719_1512805_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZV85945.1|1512801_1514496_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV85946.1|1514674_1515625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85947.1|1515766_1516069_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85948.1|1517177_1518239_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZV85949.1|1518272_1519109_+	peptidase M48	NA	NA	NA	NA	NA
AZV85950.1|1519118_1519661_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZV85951.1|1519674_1520967_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZV85952.1|1520963_1521557_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZV85953.1|1521709_1522807_+	MRP family ATP-binding protein	NA	NA	NA	NA	NA
AZV85954.1|1522813_1523374_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85955.1|1523370_1524051_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88103.1|1524107_1526165_+	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AZV85956.1|1526161_1526791_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85957.1|1526942_1527152_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZV85958.1|1527166_1530136_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZV85959.1|1530770_1531004_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85960.1|1531016_1532174_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZV85961.1|1532196_1532571_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85962.1|1532604_1533720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV85963.1|1534619_1535324_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZV85964.1|1535320_1536139_+	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85965.1|1536422_1537826_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZV88104.1|1537840_1538491_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZV85966.1|1538572_1539649_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZV85967.1|1539835_1540966_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZV85968.1|1541136_1542720_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZV85969.1|1542723_1543536_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZV85970.1|1543680_1544775_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85971.1|1544986_1545616_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85972.1|1547298_1547955_+	N-(5'-phosphoribosyl)anthranilate isomerase	NA	NA	NA	NA	NA
AZV85973.1|1548515_1549385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85974.1|1549411_1550185_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZV85975.1|1550196_1551438_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85976.1|1553300_1554170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85977.1|1554201_1555299_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZV85978.1|1555295_1556246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85979.1|1556238_1556670_+	hypothetical protein	NA	NA	NA	NA	NA
AZV85980.1|1556666_1557059_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85981.1|1557064_1557841_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZV85982.1|1558228_1560178_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZV85983.1|1560198_1560744_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZV85984.1|1561846_1562245_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZV85985.1|1562360_1562630_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
AZV85986.1|1562751_1564446_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZV85987.1|1564610_1564835_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85988.1|1565433_1566384_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZV85989.1|1566425_1567586_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV85990.1|1567746_1568667_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZV85991.1|1568679_1569321_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZV85992.1|1569317_1569989_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZV85993.1|1569985_1570756_+	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZV85994.1|1570854_1571805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV85995.1|1572021_1572426_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AZV85996.1|1572499_1573690_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZV85997.1|1573723_1574050_-	hypothetical protein	NA	NA	NA	NA	NA
AZV85998.1|1574072_1574588_-	transporter	NA	NA	NA	NA	NA
AZV85999.1|1574646_1575873_-	formamidase	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZV86000.1|1576050_1577181_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZV86001.1|1577415_1577997_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZV86002.1|1578133_1579198_+	fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AZV86003.1|1579282_1579729_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AZV86004.1|1579953_1580835_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZV86005.1|1580889_1581141_+	mRNA interferase MqsR	NA	NA	NA	NA	NA
AZV86006.1|1581143_1581545_+	antitoxin	NA	NA	NA	NA	NA
AZV86007.1|1581808_1582288_+	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
AZV86008.1|1582437_1582953_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.6	7.0e-16
AZV86009.1|1582955_1584146_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZV86010.1|1584165_1585203_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	3.6e-35
AZV86011.1|1585339_1586362_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZV86012.1|1586453_1587290_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86013.1|1587482_1588388_+	agmatinase	NA	NA	NA	NA	NA
AZV86014.1|1588414_1589206_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86015.1|1589228_1589921_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV86016.1|1589942_1590695_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZV86017.1|1590823_1592383_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZV88105.1|1592516_1592960_+	acyl dehydratase	NA	NA	NA	NA	NA
AZV86018.1|1593097_1594291_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV86019.1|1594370_1596065_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZV86020.1|1596222_1597110_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZV86021.1|1597147_1598080_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZV86022.1|1598093_1598582_+|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AZV86023.1|1598699_1599278_+|protease	protease	protease	NA	NA	NA	NA
AZV86024.1|1599383_1599752_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZV86025.1|1599849_1600800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86026.1|1600806_1601919_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AZV86027.1|1602605_1603808_+	MFS transporter	NA	NA	NA	NA	NA
AZV86028.1|1604011_1606672_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86029.1|1606684_1610089_+	nuclease	NA	NA	NA	NA	NA
AZV88106.1|1610891_1612982_+	DNA polymerase III, subunit gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.1e-43
AZV86030.1|1613028_1613355_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZV86031.1|1613405_1614014_+	recombination protein RecR	NA	NA	NA	NA	NA
AZV86032.1|1614112_1615063_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86033.1|1615161_1616112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	1657050	1728122	4111426	transposase	Ectocarpus_siliculosus_virus(11.11%)	55	NA	NA
AZV86067.1|1657050_1658001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86068.1|1658022_1659243_+	YggW family oxidoreductase	NA	NA	NA	NA	NA
AZV86069.1|1659428_1660841_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZV86070.1|1660904_1661972_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZV86071.1|1661971_1663459_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZV88111.1|1663468_1664413_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86072.1|1664572_1665271_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA	NA
AZV86073.1|1665348_1666254_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86074.1|1666273_1667143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86075.1|1667322_1668117_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZV86076.1|1668121_1669792_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZV86077.1|1669915_1670965_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86078.1|1671286_1672063_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZV86079.1|1672127_1673030_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86080.1|1674323_1675127_+	2,5-didehydrogluconate reductase B	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZV86081.1|1677820_1678207_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZV86082.1|1678222_1680313_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AZV86083.1|1680364_1681318_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZV88112.1|1681332_1682220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86084.1|1682357_1683884_+	methylmalonate-semialdehyde dehydrogenase (acylating)	NA	NA	NA	NA	NA
AZV88113.1|1683982_1684483_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZV86085.1|1684806_1686762_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZV86086.1|1686929_1689014_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88114.1|1689040_1689466_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86087.1|1690681_1691452_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZV86088.1|1691451_1692192_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZV86089.1|1692233_1693403_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZV86090.1|1693434_1695519_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZV86091.1|1695515_1696406_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZV86092.1|1696402_1697500_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZV86093.1|1697522_1698812_+	Vi polysaccharide biosynthesis protein VipA/TviB	NA	NA	NA	NA	NA
AZV86094.1|1698823_1699849_+	LPS biosynthesis protein WbpP	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZV86095.1|1699845_1701903_+	beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase	NA	NA	NA	NA	NA
AZV86096.1|1701916_1703092_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZV86097.1|1703173_1704124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86098.1|1704182_1704956_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV86099.1|1704948_1706505_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZV86100.1|1706501_1707452_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86101.1|1708778_1709381_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86102.1|1709620_1710322_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZV86103.1|1710315_1711098_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZV86104.1|1711282_1712233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86105.1|1712330_1713068_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZV86106.1|1713257_1714016_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV86107.1|1714062_1715064_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86108.1|1715229_1716198_-	phenol degradation protein meta	NA	NA	NA	NA	NA
AZV86109.1|1717737_1718706_+	AAA family ATPase	NA	NA	NA	NA	NA
AZV86110.1|1718714_1719656_+	MoxR protein	NA	NA	NA	NA	NA
AZV88115.1|1720129_1721140_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88117.1|1721130_1722645_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86111.1|1722641_1723988_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88116.1|1723990_1725025_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZV86112.1|1725074_1726700_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZV86113.1|1726793_1727273_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86114.1|1727252_1728122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2201706	2267256	4111426	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	60	NA	NA
AZV86462.1|2201706_2202576_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86463.1|2202857_2203667_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV86464.1|2203872_2204742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86465.1|2204738_2205632_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZV86466.1|2205756_2205951_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZV86467.1|2205950_2206292_-	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
AZV86468.1|2206301_2208164_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZV86469.1|2208293_2208806_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AZV86470.1|2208808_2209132_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZV86471.1|2209133_2209544_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZV86472.1|2209581_2210793_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZV86473.1|2210810_2211323_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZV86474.1|2211538_2212030_-	protein tyrosine phosphatase	NA	NA	NA	NA	NA
AZV86475.1|2212282_2214319_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AZV86476.1|2214396_2215599_+	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AZV86477.1|2215727_2216378_+	repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
AZV86478.1|2216604_2217534_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZV86479.1|2217579_2217939_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86480.1|2217935_2218805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88153.1|2219456_2219669_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86481.1|2219686_2220418_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86482.1|2220452_2221094_-	succinyl-CoA--3-ketoacid-CoA transferase	NA	NA	NA	NA	NA
AZV86483.1|2221086_2221755_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZV86484.1|2223967_2224744_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZV86485.1|2224765_2225923_-	thiolase	NA	NA	NA	NA	NA
AZV86486.1|2225919_2226351_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88154.1|2226347_2227145_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV86487.1|2227164_2227620_-	oxidoreductase	NA	NA	NA	NA	NA
AZV86488.1|2227632_2228604_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86489.1|2228669_2229893_-	CoA transferase	NA	NA	NA	NA	NA
AZV86490.1|2230120_2231071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86491.1|2231195_2233649_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZV86492.1|2233837_2235142_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZV86493.1|2235246_2235900_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZV86494.1|2235902_2237213_-	trigger factor	NA	NA	NA	NA	NA
AZV86495.1|2237409_2237970_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZV86496.1|2238081_2238282_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZV86497.1|2238627_2239194_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86498.1|2239277_2239481_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZV86499.1|2239787_2240108_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86500.1|2240149_2240431_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86501.1|2240505_2241762_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZV86502.1|2242144_2242474_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86503.1|2244044_2244866_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZV86504.1|2244865_2246005_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZV86505.1|2246011_2246908_+	ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZV86506.1|2246922_2248830_+	ABC transporter	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZV86507.1|2249189_2251802_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZV86508.1|2251854_2254155_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZV86509.1|2254151_2255360_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZV86510.1|2255621_2255996_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86511.1|2255992_2256862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88155.1|2257041_2258439_-	rRNA methyltransferase	NA	NA	NA	NA	NA
AZV86512.1|2259095_2260061_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AZV86513.1|2260050_2262912_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZV86514.1|2262914_2263421_+	signal peptidase II	NA	NA	NA	NA	NA
AZV86515.1|2263525_2264734_+	phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZV86516.1|2264735_2265674_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86517.1|2265835_2266309_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZV86518.1|2266305_2267256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2688976	2734621	4111426	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZV86857.1|2688976_2689846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86858.1|2690037_2690220_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86859.1|2690319_2690913_-	twin-arginine translocation pathway signal	NA	NA	NA	NA	NA
AZV86860.1|2691099_2692191_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86861.1|2692690_2693101_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV86862.1|2693159_2693489_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
AZV86863.1|2693506_2695924_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZV86864.1|2695936_2696959_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZV86865.1|2697033_2697393_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZV86866.1|2697408_2697606_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZV86867.1|2697941_2698811_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86868.1|2699086_2699536_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZV86869.1|2699546_2700482_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86870.1|2700592_2702041_+	2-aminoadipate aminotransferase	NA	NA	NA	NA	NA
AZV86871.1|2702155_2702401_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86872.1|2702621_2703491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86873.1|2703735_2704449_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZV86874.1|2704571_2704799_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZV86875.1|2705093_2705732_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86876.1|2705840_2706875_+	hydrolase	NA	NA	NA	NA	NA
AZV86877.1|2708235_2708760_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZV86878.1|2709231_2710293_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZV86879.1|2710376_2712011_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZV86880.1|2712012_2712816_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZV86881.1|2712844_2713804_-	ABC transporter	NA	NA	NA	NA	NA
AZV86882.1|2713807_2715322_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86883.1|2715358_2716363_-	peptidase M20	NA	NA	NA	NA	NA
AZV86884.1|2716370_2716619_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86885.1|2716793_2717264_-	histidine kinase	NA	NA	NA	NA	NA
AZV86886.1|2717299_2717911_-	RhtB family transporter	NA	NA	NA	NA	NA
AZV86887.1|2717941_2718565_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV86888.1|2718645_2720178_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86889.1|2720212_2721430_-	MFS transporter	NA	NA	NA	NA	NA
AZV86890.1|2721497_2722529_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZV86891.1|2722525_2723695_-	amine oxidase	NA	NA	NA	NA	NA
AZV86892.1|2723688_2724369_-	anti-sigma factor	NA	NA	NA	NA	NA
AZV86893.1|2724530_2725373_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86894.1|2725535_2726507_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZV86895.1|2726678_2727557_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86896.1|2727579_2728650_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86897.1|2728690_2729560_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86898.1|2729932_2731291_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZV86899.1|2731402_2733130_+	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZV86900.1|2733751_2734621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2755786	2816852	4111426	transposase,tRNA	Bacillus_virus(20.0%)	47	NA	NA
AZV86918.1|2755786_2756656_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86919.1|2756845_2757082_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86920.1|2757152_2759789_-	GTP-binding protein	NA	NA	NA	NA	NA
AZV86921.1|2759785_2760910_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZV86922.1|2760906_2762289_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZV86923.1|2762424_2762892_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZV86924.1|2763810_2764956_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86925.1|2764957_2766688_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV86926.1|2766805_2767114_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86927.1|2767126_2767939_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZV88189.1|2768819_2769908_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
AZV88190.1|2771110_2771899_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
AZV86928.1|2771938_2773543_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZV86929.1|2773623_2774364_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86930.1|2774371_2774866_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88191.1|2775238_2776258_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86931.1|2776254_2777637_-	hypothetical protein	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
AZV86932.1|2777669_2778530_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86933.1|2779611_2780415_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86934.1|2780473_2780911_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86935.1|2781001_2781964_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86936.1|2782011_2782956_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AZV86937.1|2783051_2783861_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86938.1|2783937_2784312_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86939.1|2784418_2785111_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86940.1|2785103_2785520_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZV86941.1|2785630_2786263_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZV86942.1|2786291_2786735_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZV86943.1|2786756_2787848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV88192.1|2787902_2788691_-	aldolase	NA	NA	NA	NA	NA
AZV86944.1|2788838_2789459_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZV86945.1|2789598_2790072_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86946.1|2791210_2792161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86947.1|2792157_2799819_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZV86948.1|2800059_2804106_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZV86949.1|2804463_2805000_+	TRAP transporter small permease protein	NA	NA	NA	NA	NA
AZV86950.1|2804996_2806295_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZV86951.1|2806374_2807403_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZV86952.1|2807744_2808614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86953.1|2808793_2809663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86954.1|2809659_2810610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86955.1|2810926_2811532_+	fimbrial protein	NA	NA	NA	NA	NA
AZV86956.1|2811585_2812899_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZV86957.1|2812973_2813444_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZV86958.1|2813443_2814232_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZV86959.1|2814242_2815895_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZV86960.1|2815982_2816852_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2840858	2906689	4111426	transposase,protease	Pelagibacter_phage(16.67%)	48	NA	NA
AZV86979.1|2840858_2841809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV86980.1|2841942_2843049_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86981.1|2843059_2844157_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA	NA
AZV86982.1|2844301_2845507_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZV86983.1|2845513_2846035_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZV88196.1|2846031_2846514_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZV86984.1|2846519_2846771_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AZV88195.1|2846751_2847237_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA	NA
AZV86985.1|2847372_2850834_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86986.1|2850851_2851736_+	carboxymethylenebutenolidase	NA	NA	NA	NA	NA
AZV86987.1|2851745_2852177_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88197.1|2852423_2852927_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZV86988.1|2853004_2854405_+	MFS transporter	NA	NA	NA	NA	NA
AZV86989.1|2854479_2855355_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88198.1|2855351_2856359_-	biotin synthase BioB	NA	NA	NA	NA	NA
AZV86990.1|2856826_2857132_+	hypothetical protein	NA	NA	NA	NA	NA
AZV86991.1|2857222_2857813_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV86992.1|2858003_2859020_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV86993.1|2859211_2861548_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZV86994.1|2861630_2862065_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZV86995.1|2864156_2864951_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZV86996.1|2864982_2865687_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZV86997.1|2865761_2866562_-	hypothetical protein	NA	NA	NA	NA	NA
AZV86998.1|2866558_2866966_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZV86999.1|2866962_2867604_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZV87000.1|2867596_2869597_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZV87001.1|2870857_2872189_+	arabinose ABC transporter permease	NA	NA	NA	NA	NA
AZV87002.1|2872185_2873055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87003.1|2874842_2875109_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87004.1|2875816_2876155_+	transcriptional regulator	NA	NA	NA	NA	NA
AZV87005.1|2877483_2879763_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZV87006.1|2879740_2880445_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87007.1|2880707_2881310_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87008.1|2881406_2882696_+	MFS transporter	NA	NA	NA	NA	NA
AZV87009.1|2882753_2883485_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZV87010.1|2883481_2884285_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZV87011.1|2884281_2885370_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZV87012.1|2885366_2886296_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV87013.1|2886444_2887590_-	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87014.1|2887611_2888481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87015.1|2888892_2892714_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZV87016.1|2892870_2893539_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87017.1|2893543_2895217_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AZV87018.1|2895235_2896555_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZV87019.1|2896559_2898875_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
AZV88199.1|2898930_2901099_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZV88200.1|2901095_2905661_-	alpha-2-macroglobulin	NA	NA	NA	NA	NA
AZV87020.1|2906374_2906689_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
>prophage 17
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2912919	2972253	4111426	transposase	Vibrio_phage(20.0%)	54	NA	NA
AZV87027.1|2912919_2913870_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87028.1|2914150_2914771_+	flagellar motor protein MotA	NA	NA	NA	NA	NA
AZV87029.1|2914767_2915181_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZV87030.1|2915177_2916221_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZV87031.1|2916276_2916465_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87032.1|2916474_2917239_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZV87033.1|2917329_2917986_+	adenylate kinase	NA	NA	NA	NA	NA
AZV87034.1|2918077_2918836_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV87035.1|2918861_2920463_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZV87036.1|2920663_2921668_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AZV87037.1|2921768_2922032_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZV87038.1|2922149_2922926_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZV87039.1|2923516_2924467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87040.1|2926850_2927963_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZV87041.1|2928019_2928970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87042.1|2929178_2929400_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87043.1|2929613_2931020_-	threonine synthase	NA	NA	NA	NA	NA
AZV87044.1|2931016_2932321_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
AZV87045.1|2932317_2933505_-	alanine transaminase	NA	NA	NA	NA	NA
AZV87046.1|2933721_2934174_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87047.1|2934176_2934641_+	peroxiredoxin	NA	NA	NA	NA	NA
AZV87048.1|2934720_2936400_+	phosphate starvation-inducible protein PhoH	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AZV87049.1|2936504_2937482_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AZV87050.1|2937561_2938530_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
AZV87051.1|2938550_2939924_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AZV87052.1|2939920_2940757_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87053.1|2940873_2941329_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AZV87054.1|2941344_2941617_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AZV87055.1|2941709_2942033_-	primosomal replication protein N	NA	NA	NA	NA	NA
AZV87056.1|2942080_2942461_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AZV87057.1|2942680_2943478_-	GTP cyclohydrolase	NA	NA	NA	NA	NA
AZV87058.1|2943634_2945497_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AZV87059.1|2945546_2946458_-	geranyl transferase	NA	NA	NA	NA	NA
AZV87060.1|2946462_2946729_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AZV88201.1|2946815_2947646_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87061.1|2947820_2948786_+	MFS transporter	NA	NA	NA	NA	NA
AZV87062.1|2948956_2949967_+	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AZV87063.1|2950114_2951266_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
AZV87064.1|2951349_2952213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87065.1|2952408_2953881_-	magnesium transporter	NA	NA	NA	NA	NA
AZV87066.1|2953891_2954302_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZV87067.1|2954365_2955412_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87068.1|2955518_2956397_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87069.1|2956410_2957607_-	amidohydrolase	NA	NA	NA	NA	NA
AZV87070.1|2957668_2959360_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZV87071.1|2959356_2960226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87072.1|2960427_2961324_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZV87073.1|2963601_2965827_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZV87074.1|2965991_2967080_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZV87075.1|2967036_2967690_+	DL-methionine transporter permease subunit	NA	NA	NA	NA	NA
AZV87076.1|2967737_2968535_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87077.1|2969147_2970017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87078.1|2970097_2971246_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZV87079.1|2971302_2972253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	2989247	3052339	4111426	transposase,tRNA	Bacillus_virus(28.57%)	56	NA	NA
AZV87095.1|2989247_2990117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87096.1|2990301_2990922_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV88204.1|2991025_2991766_+	oxidoreductase	NA	NA	NA	NA	NA
AZV87097.1|2992900_2994025_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87098.1|2994070_2994439_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87099.1|2994680_2995550_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87100.1|2996666_2997209_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87101.1|2997675_2998545_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87102.1|2998541_2999450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87103.1|2999576_3000413_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZV87104.1|3000925_3002035_+	porin	NA	NA	NA	NA	NA
AZV87105.1|3002096_3002966_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87106.1|3003239_3004022_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV87107.1|3004035_3004800_-	short-chain dehydrogenase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
AZV87108.1|3004812_3006159_-	MFS transporter	NA	NA	NA	NA	NA
AZV87109.1|3006184_3007114_-	acetylxylan esterase	NA	NA	NA	NA	NA
AZV87110.1|3007229_3008135_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87111.1|3008152_3009352_-	aromatic amino acid aminotransferase	NA	NA	NA	NA	NA
AZV87112.1|3009424_3010117_-	hydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZV87113.1|3013801_3014170_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87114.1|3014456_3015383_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87115.1|3015426_3016437_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZV87116.1|3016433_3016868_+	thioesterase	NA	NA	NA	NA	NA
AZV87117.1|3017993_3018782_+	ABC transporter	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZV87118.1|3018791_3019574_+	ABC transporter permease	NA	NA	NA	NA	NA
AZV87119.1|3019577_3020669_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88205.1|3020774_3022250_+	acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZV87120.1|3022391_3022940_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZV87121.1|3022955_3023417_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV87122.1|3023517_3024507_-	MFS transporter	NA	NA	NA	NA	NA
AZV87123.1|3024805_3025507_+	riboflavin synthase subunit alpha	NA	NA	NA	NA	NA
AZV87124.1|3025545_3026919_-	amidase	NA	NA	NA	NA	NA
AZV87125.1|3029129_3030032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87126.1|3029979_3031200_-	MFS transporter	NA	NA	NA	NA	NA
AZV87127.1|3031196_3031706_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AZV87128.1|3031695_3032391_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87129.1|3032461_3033331_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87130.1|3033341_3033617_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87131.1|3033915_3034629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87132.1|3035489_3036188_-	branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	3.8e-12
AZV87133.1|3036955_3037918_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV87134.1|3037921_3038782_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV87135.1|3038775_3039168_-	RidA family protein	NA	NA	NA	NA	NA
AZV87136.1|3041822_3042620_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87137.1|3042653_3043433_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV87138.1|3043461_3044334_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87139.1|3044355_3045105_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZV88206.1|3045112_3045970_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV87140.1|3046010_3046574_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87141.1|3046604_3046901_-	histidine kinase	NA	NA	NA	NA	NA
AZV87142.1|3046981_3047785_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87143.1|3047805_3049002_-	formyl-CoA transferase	NA	NA	NA	NA	NA
AZV88207.1|3049004_3050006_-	amidase	NA	NA	NA	NA	NA
AZV87144.1|3050110_3050521_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87145.1|3050623_3051286_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87146.1|3051469_3052339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3125622	3189454	4111426	transposase,protease,tRNA	Pseudomonas_phage(30.0%)	56	NA	NA
AZV87200.1|3125622_3126573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88211.1|3126718_3127843_-	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AZV87201.1|3128048_3128612_+	hydrolase	NA	NA	NA	NA	NA
AZV87202.1|3129606_3130089_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AZV87203.1|3130246_3131494_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AZV87204.1|3131713_3132370_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZV87205.1|3132405_3133635_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AZV87206.1|3133982_3134852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87207.1|3134950_3135901_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87208.1|3135992_3137408_+	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AZV87209.1|3137413_3138550_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AZV87210.1|3138619_3138991_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AZV87211.1|3139078_3139825_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87212.1|3139861_3140926_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AZV87213.1|3141114_3141507_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AZV87214.1|3141516_3141945_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AZV87215.1|3142240_3143338_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87216.1|3143679_3145044_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AZV87217.1|3145102_3145654_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87218.1|3147597_3148407_+	spermidine/putrescine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AZV87219.1|3148409_3149246_+	sulfonate ABC transporter permease	NA	NA	NA	NA	NA
AZV87220.1|3149260_3149953_+	hydrolase	NA	NA	NA	NA	NA
AZV87221.1|3149964_3150354_-	glyoxalase	NA	NA	NA	NA	NA
AZV87222.1|3150459_3151848_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AZV87223.1|3151964_3153461_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87224.1|3153757_3154432_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87225.1|3154611_3155481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87226.1|3155477_3157937_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZV88212.1|3158072_3159479_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AZV87227.1|3159482_3160670_-	MFS transporter	NA	NA	NA	NA	NA
AZV87228.1|3160738_3161248_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87229.1|3161449_3161902_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZV87230.1|3162074_3162332_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87231.1|3162463_3165526_+	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AZV87232.1|3165831_3168759_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AZV87233.1|3168780_3169977_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AZV87234.1|3170294_3170822_+	histone	NA	NA	NA	NA	NA
AZV87235.1|3170975_3171536_+	hypothetical protein	NA	NA	NA	NA	NA
AZV88213.1|3171543_3172998_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AZV87236.1|3173017_3174145_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AZV87237.1|3174152_3174278_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87238.1|3174274_3175450_-	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AZV87239.1|3175427_3175667_-	acyl carrier protein	NA	NA	NA	NA	NA
AZV87240.1|3175947_3176451_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88214.1|3176623_3177565_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AZV87241.1|3177576_3178674_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87242.1|3179639_3180986_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZV87243.1|3180995_3181445_-	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZV87244.1|3181534_3181969_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AZV87245.1|3182047_3182596_-	thioredoxin	NA	NA	NA	NA	NA
AZV87246.1|3182678_3184049_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AZV87247.1|3184059_3184653_+	esterase	NA	NA	NA	NA	NA
AZV87248.1|3184724_3186608_+	ribonuclease II	NA	NA	NA	NA	NA
AZV87249.1|3186645_3187545_+	energy transducer TonB	NA	NA	NA	NA	NA
AZV87250.1|3187541_3188405_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AZV87251.1|3188584_3189454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3237593	3273477	4111426	transposase	Erwinia_phage(20.0%)	37	NA	NA
AZV87283.1|3237593_3238544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87284.1|3238988_3239300_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZV87285.1|3239299_3239830_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87286.1|3240072_3240942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87287.1|3241040_3241991_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87288.1|3242280_3242745_+	tricarboxylate transporter	NA	NA	NA	NA	NA
AZV87289.1|3242759_3244265_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87290.1|3244521_3246126_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZV87291.1|3246181_3247087_+	oxidoreductase	NA	NA	NA	NA	NA
AZV87292.1|3247527_3248397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87293.1|3248576_3249446_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87294.1|3249607_3250189_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZV88219.1|3250613_3250919_+	RND transporter	NA	NA	NA	NA	NA
AZV87295.1|3250932_3252267_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZV87296.1|3252288_3252828_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZV87297.1|3252975_3253440_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZV87298.1|3253582_3254698_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA	NA
AZV87299.1|3254974_3255478_-	transcriptional repressor	NA	NA	NA	NA	NA
AZV87300.1|3255615_3255816_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87301.1|3255806_3256529_+	ABC transporter	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZV87302.1|3256525_3257422_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AZV87303.1|3257418_3258354_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87304.1|3258314_3258983_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87305.1|3258973_3259942_+	nickel transporter	NA	NA	NA	NA	NA
AZV87306.1|3259990_3262132_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZV87307.1|3262144_3263086_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.2e-14
AZV87308.1|3263138_3263831_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87309.1|3263857_3264769_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZV87310.1|3264811_3265702_-	acyltransferase	NA	NA	NA	NA	NA
AZV87311.1|3265698_3266553_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZV87312.1|3266836_3268000_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
AZV87313.1|3268110_3268362_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZV87314.1|3268441_3269482_+	alpha-mannosyltransferase	NA	NA	NA	NA	NA
AZV87315.1|3269761_3271180_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZV87316.1|3271250_3271586_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87317.1|3271585_3272428_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZV87318.1|3272607_3273477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3280063	3336126	4111426	integrase,transposase,protease,tRNA	Sinorhizobium_phage(16.67%)	41	3318973:3318991	3338861:3338879
AZV87321.1|3280063_3281158_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZV87322.1|3281172_3282363_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87323.1|3284413_3285166_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZV87324.1|3285303_3286254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV88222.1|3286566_3288045_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87325.1|3288051_3289161_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZV87326.1|3289172_3289853_-	molybdenum ABC transporter permease subunit	NA	NA	NA	NA	NA
AZV87327.1|3289874_3290630_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87328.1|3290765_3291668_-	hydrolase	NA	NA	NA	NA	NA
AZV87329.1|3291737_3292319_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87330.1|3292411_3292534_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87331.1|3292579_3292879_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87332.1|3293030_3293510_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88223.1|3293525_3293891_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87333.1|3295662_3296091_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZV87334.1|3296181_3297132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87335.1|3297659_3298433_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87336.1|3298565_3299576_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZV87337.1|3299727_3301383_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZV87338.1|3301437_3301779_-	cupin	NA	NA	NA	NA	NA
AZV87339.1|3301792_3303232_-	amine oxidase	NA	NA	NA	NA	NA
AZV87340.1|3303364_3304180_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87341.1|3304609_3305323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87342.1|3306716_3307658_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87343.1|3307884_3308625_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87344.1|3311098_3312670_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV87345.1|3313002_3314856_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87346.1|3314900_3317465_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3318973:3318991	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZV87347.1|3319617_3319902_-	hypothetical protein	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZV87348.1|3319983_3320895_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87349.1|3320964_3321210_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87350.1|3321438_3321696_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87351.1|3322210_3323080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87352.1|3323344_3324556_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZV87353.1|3324571_3327523_-	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZV87354.1|3327524_3330281_-	restriction endonuclease	NA	NA	NA	NA	NA
AZV87355.1|3330791_3331838_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
AZV87356.1|3332179_3333307_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZV87357.1|3333586_3334678_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZV87358.1|3334750_3335533_-|protease	CAAX protease	protease	NA	NA	NA	NA
AZV87359.1|3335529_3336126_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3338861:3338879	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 22
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3385142	3505221	4111426	transposase,tRNA	Acinetobacter_phage(18.75%)	103	NA	NA
AZV87395.1|3385142_3386012_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87396.1|3386416_3387061_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZV87397.1|3387085_3387670_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZV87398.1|3387770_3388388_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZV87399.1|3388390_3390106_-	urease subunit alpha	NA	NA	NA	NA	NA
AZV87400.1|3390102_3390411_-	urease subunit beta	NA	NA	NA	NA	NA
AZV87401.1|3390427_3391045_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZV87402.1|3391089_3391392_-	urease subunit gamma	NA	NA	NA	NA	NA
AZV87403.1|3391492_3392347_-	urease accessory protein	NA	NA	NA	NA	NA
AZV87404.1|3393618_3394026_-	aldehyde-activating protein	NA	NA	NA	NA	NA
AZV87405.1|3394395_3395190_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87406.1|3395290_3396526_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZV87407.1|3396594_3397611_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZV87408.1|3397622_3398999_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87409.1|3398995_3400192_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87410.1|3400188_3401727_-	SpoVR family protein	NA	NA	NA	NA	NA
AZV87411.1|3401723_3402983_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87412.1|3404923_3405793_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87413.1|3406640_3407735_-	CoA transferase	NA	NA	NA	NA	NA
AZV87414.1|3407727_3409062_-	CoA ligase	NA	NA	NA	NA	NA
AZV87415.1|3409015_3409699_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87416.1|3409724_3410888_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV87417.1|3410884_3411886_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV87418.1|3411885_3412758_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZV87419.1|3412754_3413504_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZV87420.1|3413500_3414292_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZV87421.1|3414288_3415428_-	ABC transporter	NA	NA	NA	NA	NA
AZV87422.1|3415703_3416489_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV87423.1|3416522_3417305_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87424.1|3417308_3417698_+	DNA-binding protein	NA	NA	NA	NA	NA
AZV87425.1|3418837_3419701_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87426.1|3419736_3420825_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87427.1|3420821_3421691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87428.1|3422125_3425104_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87429.1|3426030_3426909_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZV87430.1|3426944_3427277_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87431.1|3427255_3427894_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87432.1|3427873_3428743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87433.1|3429486_3429807_+	hypothetical protein	NA	A0A1V0S9J5	Catovirus	45.3	2.4e-14
AZV87434.1|3429905_3430856_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87435.1|3430852_3431320_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZV87436.1|3431362_3432133_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZV87437.1|3432153_3432954_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZV87438.1|3432964_3434374_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZV87439.1|3434468_3435254_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
AZV87440.1|3435493_3436510_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV87441.1|3436617_3437010_-	osmotically inducible protein OsmC	NA	NA	NA	NA	NA
AZV87442.1|3437147_3437828_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87443.1|3437832_3438804_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87444.1|3438899_3439769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87445.1|3441354_3442056_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZV87446.1|3442055_3443480_+	ATPase	NA	NA	NA	NA	NA
AZV87447.1|3443496_3444552_-	cytochrome oxidase	NA	NA	NA	NA	NA
AZV87448.1|3444548_3445889_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZV87449.1|3446004_3447768_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZV87450.1|3447879_3448758_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZV87451.1|3448870_3449686_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZV87452.1|3449689_3449941_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AZV87453.1|3451371_3451593_-	hypothetical protein	NA	NA	NA	NA	NA
AZV88226.1|3453953_3454820_-	EamA family transporter	NA	NA	NA	NA	NA
AZV87454.1|3455368_3456577_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV87455.1|3456656_3458228_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87456.1|3458345_3459281_-	glycosyl transferase	NA	NA	NA	NA	NA
AZV87457.1|3459469_3460414_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZV87458.1|3460482_3460653_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87459.1|3460981_3466699_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZV87460.1|3466704_3467832_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZV87461.1|3467887_3468514_+	aminotransferase	NA	NA	NA	NA	NA
AZV87462.1|3468785_3469802_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZV87463.1|3469897_3470608_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZV88227.1|3470604_3471594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87464.1|3471689_3473321_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZV87465.1|3473323_3474061_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87466.1|3474216_3475089_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZV87467.1|3475438_3476578_+	MFS transporter	NA	NA	NA	NA	NA
AZV87468.1|3476574_3477234_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZV87469.1|3477305_3477938_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZV87470.1|3477967_3478486_+	flavin reductase	NA	NA	NA	NA	NA
AZV87471.1|3478496_3479606_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZV87472.1|3479652_3480507_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZV87473.1|3480508_3481411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87474.1|3482633_3483584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87475.1|3483681_3484815_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87476.1|3484851_3485100_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87477.1|3485339_3486329_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87478.1|3486504_3487293_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZV87479.1|3487289_3488321_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZV87480.1|3488339_3488903_-	anthranilate/aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZV87481.1|3488958_3490479_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZV87482.1|3490742_3491447_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZV87483.1|3491454_3492183_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZV87484.1|3492297_3492672_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZV87485.1|3492714_3494004_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87486.1|3494000_3495170_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZV87487.1|3495196_3496006_+	disulfide bond formation protein DsbC	NA	NA	NA	NA	NA
AZV87488.1|3496065_3497001_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZV87489.1|3497013_3497964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87490.1|3498062_3499025_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZV87491.1|3499056_3499416_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZV87492.1|3499540_3500443_+	oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZV88228.1|3500444_3502211_-	peptidase M61	NA	NA	NA	NA	NA
AZV87493.1|3502251_3503028_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87494.1|3504351_3505221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3520240	3578309	4111426	holin,transposase,tRNA	Catovirus(12.5%)	49	NA	NA
AZV87507.1|3520240_3521191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87508.1|3521319_3522453_-	peptidase	NA	NA	NA	NA	NA
AZV87509.1|3522496_3523402_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZV87510.1|3525101_3526022_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AZV87511.1|3526029_3527007_-	ABC transporter permease	NA	NA	NA	NA	NA
AZV87512.1|3527065_3528025_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZV87513.1|3530074_3530311_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87514.1|3530437_3531301_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZV87515.1|3531389_3532211_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87516.1|3532290_3533028_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87517.1|3533024_3534017_-	2-nitropropane dioxygenase	NA	NA	NA	NA	NA
AZV88231.1|3534169_3534793_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87518.1|3534837_3535986_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZV87519.1|3538390_3539260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87520.1|3539600_3540551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87521.1|3540730_3541600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87522.1|3541896_3542394_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87523.1|3542436_3544212_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87524.1|3544219_3545086_+	copper resistance protein	NA	NA	NA	NA	NA
AZV87525.1|3545092_3545818_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87526.1|3545987_3546218_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87527.1|3546282_3546477_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87528.1|3546996_3547767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87529.1|3548080_3548671_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZV87530.1|3548704_3550033_-	amidase	NA	NA	NA	NA	NA
AZV87531.1|3550107_3551253_-	transporter	NA	NA	NA	NA	NA
AZV87532.1|3552322_3552757_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZV87533.1|3554273_3555158_+	EamA family transporter	NA	NA	NA	NA	NA
AZV87534.1|3555154_3556360_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AZV87535.1|3556356_3557217_-	endonuclease	NA	NA	NA	NA	NA
AZV87536.1|3557329_3559120_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZV88232.1|3559160_3559805_-	hypothetical protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
AZV87537.1|3559826_3560135_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZV88233.1|3560300_3561587_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87538.1|3561713_3562973_-|holin	choline dehydrogenase	holin	A0A2I2L3D3	Orpheovirus	27.6	6.1e-13
AZV87539.1|3563020_3563971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87540.1|3565922_3567137_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZV87541.1|3567242_3568232_+	D-arabinose 5-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZV87542.1|3568228_3568837_+	phenylphosphate carboxylase subunit delta	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZV87543.1|3568849_3569479_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZV87544.1|3569475_3570096_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZV87545.1|3570127_3570919_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZV87546.1|3571272_3571494_+	ribosomal subunit interface protein	NA	NA	NA	NA	NA
AZV87547.1|3571770_3572226_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZV87548.1|3572244_3573171_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZV87549.1|3573224_3574511_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZV87550.1|3575441_3576314_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZV87551.1|3576310_3577261_+	hypothetical protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZV87552.1|3577439_3578309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3709463	3752600	4111426	integrase,transposase,tRNA	Streptococcus_phage(11.11%)	40	3747439:3747457	3753223:3753241
AZV87658.1|3709463_3710333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87659.1|3710513_3711383_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87660.1|3711379_3712015_-	lysine transporter LysE	NA	NA	NA	NA	NA
AZV87661.1|3712144_3713044_+	transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZV87662.1|3713139_3713631_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87663.1|3713677_3714643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87664.1|3715776_3717018_+	2-aminoadipate aminotransferase	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZV87665.1|3717131_3718148_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZV87666.1|3718182_3718659_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87667.1|3718801_3719710_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZV87668.1|3719823_3720936_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZV88243.1|3721036_3721522_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZV87669.1|3721658_3722909_+	kynureninase	NA	NA	NA	NA	NA
AZV87670.1|3723010_3723523_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZV87671.1|3723621_3724572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87672.1|3724637_3725576_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZV87673.1|3725598_3726225_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZV87674.1|3726221_3726878_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZV87675.1|3726874_3727477_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87676.1|3727483_3728071_-	Rossman fold protein, TIGR00730 family	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
AZV87677.1|3728251_3728821_+	bacterioferritin	NA	NA	NA	NA	NA
AZV87678.1|3728891_3730211_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA	NA
AZV88244.1|3730317_3730509_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZV87679.1|3732203_3733199_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87680.1|3733283_3733958_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87681.1|3733954_3734824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87682.1|3735066_3736308_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZV87683.1|3736304_3737249_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZV87684.1|3737448_3738318_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87685.1|3738277_3739207_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87686.1|3739260_3739596_-	alkylhydroperoxidase	NA	NA	NA	NA	NA
AZV87687.1|3739640_3740405_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZV87688.1|3740428_3741169_-	transcriptional regulator	NA	NA	NA	NA	NA
AZV87689.1|3741176_3742730_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
AZV87690.1|3742764_3743742_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87691.1|3744014_3744596_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZV87692.1|3744647_3751781_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3747439:3747457	attL	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
AZV87693.1|3751996_3752128_-	entericidin	NA	NA	NA	NA	NA
AZV88245.1|3752159_3752285_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87694.1|3752393_3752600_-|integrase	integrase	integrase	NA	NA	NA	NA
3753223:3753241	attR	GCGACCCGCAGCGTGCCGG	NA	NA	NA	NA
>prophage 25
CP018036	Bordetella pertussis strain I094 chromosome, complete genome	4111426	3758568	3792223	4111426	integrase,transposase	Burkholderia_phage(11.11%)	34	3755074:3755091	3800762:3800779
3755074:3755091	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZV87701.1|3758568_3759438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87702.1|3759448_3760090_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87703.1|3760256_3760499_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87704.1|3760678_3761548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87705.1|3761583_3762051_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZV87706.1|3762284_3762662_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87707.1|3762658_3762841_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87708.1|3762844_3763831_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZV87709.1|3763827_3764475_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZV87710.1|3764532_3765060_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87711.1|3765096_3766281_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZV87712.1|3766291_3766633_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
AZV87713.1|3766625_3766745_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87714.1|3766745_3766946_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87715.1|3766942_3767932_-|integrase	integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZV87716.1|3769418_3771389_-	hypothetical protein	NA	NA	NA	NA	NA
AZV87717.1|3771630_3772029_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87718.1|3772037_3772961_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87719.1|3773499_3774369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87720.1|3774599_3776291_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZV87721.1|3776339_3776612_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZV87722.1|3776608_3776980_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZV87723.1|3777075_3777210_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZV88246.1|3777615_3779025_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA	NA
AZV87724.1|3779027_3780137_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
AZV87725.1|3780231_3782685_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZV87726.1|3782803_3783595_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZV87727.1|3783714_3785142_+	amidase	NA	NA	NA	NA	NA
AZV88247.1|3785180_3786152_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZV87728.1|3786236_3786440_+	hypothetical protein	NA	NA	NA	NA	NA
AZV87729.1|3786570_3787734_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
AZV87730.1|3787821_3788667_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZV87731.1|3790304_3791174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZV87732.1|3791353_3792223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3800762:3800779	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
