The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	0	122073	4108479	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZW91487.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW91488.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW91489.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW91490.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW91491.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW91492.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW91493.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW91494.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW91495.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW91496.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW91497.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW91498.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW91499.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW91500.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW94867.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW91501.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91502.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW91503.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW91504.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91505.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW91506.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91507.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW91508.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW94868.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91509.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW91510.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW91511.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91512.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW91513.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW91514.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW91515.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW91516.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW91517.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW91518.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW91519.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW91520.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW91521.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91522.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91523.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW91524.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91525.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW91526.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW91527.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91528.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZW91529.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW91530.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW91531.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW91532.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW91533.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW91534.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91535.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW91536.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW91537.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91538.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91539.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZW91540.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZW91541.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZW91542.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW91543.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91544.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91545.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW91546.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW91547.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW91548.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW91549.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94869.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91550.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW91551.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94870.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91552.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW91553.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW91554.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW91555.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZW91556.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW91557.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW91558.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW91559.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW91560.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW91561.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW91562.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW91563.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW91564.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91565.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW91566.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW91567.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW91568.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW91569.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91570.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW91571.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW91572.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW91573.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW91574.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW91575.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW91576.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW91577.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW91578.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW91579.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91580.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW91581.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW91582.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW91583.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW94871.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW91584.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94872.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW91585.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW91586.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW91587.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW91588.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW91589.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW91590.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	164891	303017	4108479	protease,transposase,tRNA	Klosneuvirus(10.53%)	118	NA	NA
AZW91622.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91623.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91624.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZW91625.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZW91626.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZW91627.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZW91628.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94877.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZW91629.1|176364_176892_+	lipoprotein	NA	NA	NA	NA	NA
AZW91630.1|176983_177799_+	lipoprotein	NA	NA	NA	NA	NA
AZW91631.1|177859_178594_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW91632.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZW91633.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91634.1|181330_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW91635.1|182422_184327_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZW91636.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZW91637.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZW91638.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
AZW91639.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZW94878.1|189527_189974_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZW91640.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91641.1|190752_193023_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZW91642.1|193071_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW91643.1|195397_196090_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZW91644.1|196086_196980_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW91645.1|197374_198475_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZW91646.1|198556_198931_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZW91647.1|198990_201855_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZW91648.1|201999_202740_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91649.1|202809_204021_+	CoA transferase	NA	NA	NA	NA	NA
AZW91650.1|204049_205018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91651.1|205631_206582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91652.1|206738_207062_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW91653.1|207166_208216_-	cyclase	NA	NA	NA	NA	NA
AZW91654.1|208212_209037_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW91655.1|209037_209334_-	YciI family protein	NA	NA	NA	NA	NA
AZW91656.1|209359_209635_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW91657.1|209691_210336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW91658.1|210335_211022_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW94879.1|211151_212003_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91659.1|212053_212779_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW91660.1|212810_214160_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW91661.1|214271_215204_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW91662.1|215661_218457_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW91663.1|219050_221993_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW91664.1|222064_222784_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW91665.1|222822_223371_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW91666.1|223525_224425_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW91667.1|224449_225400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91668.1|225386_225566_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91669.1|225618_226314_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91670.1|226330_227743_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW91671.1|227855_229286_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZW91672.1|229327_231241_-	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZW91673.1|231559_232126_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZW91674.1|232216_233218_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZW91675.1|233332_234283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91676.1|234369_235320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91677.1|235316_236267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91678.1|236365_237163_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW91679.1|238112_238523_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW91680.1|239544_240288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91681.1|240331_241375_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW91682.1|241545_243648_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91683.1|245058_246015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91684.1|246033_246525_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW91685.1|246521_247877_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW91686.1|247877_248576_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW91687.1|248572_249274_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW91688.1|249526_250576_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW91689.1|250681_251623_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW91690.1|251619_253509_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW91691.1|253595_254234_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94880.1|254376_255621_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW91692.1|255692_256229_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW91693.1|256380_257772_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW91694.1|257788_258769_-	AEC family transporter	NA	NA	NA	NA	NA
AZW91695.1|258904_259888_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW91696.1|259952_260852_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91697.1|260958_262713_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW91698.1|262720_263845_-	CoA transferase	NA	NA	NA	NA	NA
AZW91699.1|263858_264839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91700.1|265569_266520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91701.1|267079_267625_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91702.1|267708_269328_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW91703.1|269343_270498_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZW91704.1|270511_270637_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZW91705.1|270633_272385_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZW91706.1|272381_274061_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZW91707.1|274096_274672_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZW91708.1|275814_276093_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW91709.1|277136_278087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91710.1|278073_278289_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91711.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW91712.1|278533_278674_+	hypothetical protein	NA	NA	NA	NA	NA
AZW91713.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW91714.1|279651_280263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW91715.1|280421_281276_-	cytochrome c1	NA	NA	NA	NA	NA
AZW91716.1|281295_282678_-	cytochrome b	NA	NA	NA	NA	NA
AZW91717.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW91718.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW91719.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW94881.1|284836_285973_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW91720.1|285969_286920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91721.1|287018_287645_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW91722.1|287667_288594_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW91723.1|288602_290189_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW91724.1|290185_291190_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZW91725.1|291389_292250_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW91726.1|292281_293283_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZW91727.1|293353_294163_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW91728.1|294240_296100_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW91729.1|296228_297431_-	MFS transporter	NA	NA	NA	NA	NA
AZW91730.1|297544_298426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91731.1|299928_300489_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZW91732.1|300548_301499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91733.1|301690_301951_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91734.1|302066_303017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	390853	448362	4108479	transposase	Orpheovirus(14.29%)	50	NA	NA
AZW91819.1|390853_391804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91820.1|391940_392858_+	reductase	NA	NA	NA	NA	NA
AZW91821.1|392854_393103_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZW91822.1|393099_394305_+	CoA transferase	NA	NA	NA	NA	NA
AZW91823.1|394377_395373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91824.1|395395_396616_-	CoA transferase	NA	NA	NA	NA	NA
AZW91825.1|396612_397257_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91826.1|398987_399797_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91827.1|400014_401055_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZW91828.1|401153_402137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91829.1|402063_402765_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91830.1|402813_403584_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW91831.1|403580_404822_-	CoA transferase	NA	NA	NA	NA	NA
AZW91832.1|404926_406633_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW91833.1|406629_407526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91834.1|407566_409156_-	sulfurtransferase	NA	NA	NA	NA	NA
AZW91835.1|409205_410198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91836.1|410266_410866_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94887.1|411326_412304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91837.1|412382_413333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91838.1|413421_414336_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW91839.1|414332_414992_+	LysE family translocator	NA	NA	NA	NA	NA
AZW91840.1|415081_416005_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZW91841.1|416010_416466_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91842.1|416462_417566_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZW94888.1|417485_417794_+	GtrA family protein	NA	NA	NA	NA	NA
AZW91843.1|417753_419373_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZW91844.1|419369_420428_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZW91845.1|420557_421052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW91846.1|421144_422122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91847.1|422317_423523_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW91848.1|423519_425031_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW94889.1|425046_426360_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW91849.1|426550_426730_-	hypothetical protein	NA	NA	NA	NA	NA
AZW91850.1|427139_427874_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW91851.1|430318_431269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW91852.1|431400_431799_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW91853.1|432209_432680_-	universal stress protein	NA	NA	NA	NA	NA
AZW91854.1|432768_433113_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW91855.1|433212_434613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW91856.1|436401_436920_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW91857.1|437030_437786_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW91858.1|437981_439214_+	CoA transferase	NA	NA	NA	NA	NA
AZW91859.1|439206_439992_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW91860.1|440058_441030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW91861.1|441040_442018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW91862.1|442143_443316_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW91863.1|443342_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW91864.1|444436_445630_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW91865.1|447411_448362_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	619762	720226	4108479	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZW92015.1|619762_620713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92016.1|621411_621795_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92017.1|621852_622455_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZW94896.1|622472_622874_-	DoxX family protein	NA	NA	NA	NA	NA
AZW92018.1|623007_623901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92019.1|623897_624479_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZW92020.1|625273_626008_+	arginyltransferase	NA	NA	NA	NA	NA
AZW92021.1|626048_627098_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZW92022.1|627245_627824_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZW92023.1|628210_629188_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZW92024.1|629281_633676_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZW92025.1|633876_634725_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92026.1|634883_635696_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZW92027.1|635751_636702_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92028.1|636800_637601_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92029.1|637662_638046_+	thioredoxin	NA	NA	NA	NA	NA
AZW92030.1|638057_639491_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZW92031.1|639697_640027_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZW94897.1|640029_640698_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW92032.1|640961_641882_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZW92033.1|641928_642141_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZW92034.1|642163_642586_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZW92035.1|642602_643703_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW92036.1|643799_645317_-	peptidase	NA	NA	NA	NA	NA
AZW92037.1|645392_646232_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZW92038.1|646253_647135_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZW92039.1|647216_648311_-	porin	NA	NA	NA	NA	NA
AZW92040.1|648604_649555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94898.1|649629_650571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92041.1|650654_651014_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92042.1|651395_652433_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92043.1|652749_654090_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZW92044.1|654099_654552_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92045.1|654648_655830_+	monooxygenase	NA	NA	NA	NA	NA
AZW92046.1|655889_656921_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZW92047.1|656961_657201_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW92048.1|657270_658860_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZW92049.1|658859_659408_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZW92050.1|659488_660061_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZW92051.1|660079_660991_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZW92052.1|661064_662033_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZW92053.1|662155_663229_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZW92054.1|663233_665054_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZW92055.1|665130_666081_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92056.1|666169_666505_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZW92057.1|666638_667289_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZW92058.1|667310_668729_-	amidase	NA	NA	NA	NA	NA
AZW92059.1|668798_669554_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94899.1|669522_670281_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW92060.1|670291_671173_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW92061.1|671189_671897_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZW92062.1|671899_672658_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZW92063.1|672867_674610_+	sulfite reductase	NA	NA	NA	NA	NA
AZW92064.1|674602_675127_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZW92065.1|675166_675961_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92066.1|676128_677202_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92067.1|677300_678251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92068.1|678502_678715_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94900.1|678780_679392_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW92069.1|679871_680192_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92070.1|680184_680883_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92071.1|680897_681119_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92072.1|681136_682087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94901.1|682762_683212_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW92073.1|683198_684476_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW92074.1|684478_685897_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW94902.1|685925_686981_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW92075.1|686986_687229_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW92076.1|687351_687954_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW92077.1|688382_689333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92078.1|689350_689998_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW92079.1|690007_690259_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92080.1|690321_690804_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW92081.1|690805_691006_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92082.1|691005_691401_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW92083.1|691397_691796_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW92084.1|691792_692215_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92085.1|692222_692723_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW92086.1|692977_693496_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW92087.1|693505_693835_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW92088.1|693852_694143_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW92089.1|694168_696781_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW92090.1|696790_697150_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92091.1|697217_697751_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW92092.1|697747_698137_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW92093.1|698129_702086_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW92094.1|702090_702507_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92095.1|702725_702989_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZW92096.1|702988_703801_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92097.1|703805_704048_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92098.1|704026_704578_+	lysozyme	NA	NA	NA	NA	NA
AZW92099.1|704559_705093_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW92100.1|705089_705371_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92101.1|705713_705914_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92102.1|705920_706592_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW92103.1|706947_707634_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW92104.1|707614_708187_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW92105.1|708252_709983_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW92106.1|710035_710464_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW92107.1|710466_711147_+	protein TolQ	NA	NA	NA	NA	NA
AZW92108.1|711146_711605_+	protein TolR	NA	NA	NA	NA	NA
AZW92109.1|711641_712616_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZW92110.1|712632_713949_+	protein TolB	NA	NA	NA	NA	NA
AZW92111.1|713980_714478_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZW92112.1|714564_715254_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZW92113.1|715253_716303_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW92114.1|716299_717094_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZW92115.1|717262_717613_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92116.1|717588_718146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92117.1|719070_719289_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92118.1|719275_720226_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	747151	820313	4108479	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZW92139.1|747151_748102_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92140.1|748756_749854_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW92141.1|749887_751153_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW92142.1|751310_752261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92143.1|752504_753095_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW94904.1|753110_755555_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW92144.1|755674_756646_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92145.1|756777_757302_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW92146.1|757261_758212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92147.1|758433_760629_-	DNA methylase	NA	NA	NA	NA	NA
AZW92148.1|760701_761109_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW92149.1|761231_762182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92150.1|762297_762741_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW92151.1|762803_763598_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW92152.1|763763_764900_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZW92153.1|764970_766104_-	GTPase ObgE	NA	NA	NA	NA	NA
AZW92154.1|766253_766514_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZW92155.1|766547_766859_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZW92156.1|767283_768432_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZW92157.1|768546_769512_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZW92158.1|769780_770647_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92159.1|770777_772826_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW92160.1|772843_774841_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW92161.1|774875_776213_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW92162.1|776475_778329_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92163.1|778383_779865_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW92164.1|779880_780468_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZW94905.1|780550_780730_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92165.1|780916_786037_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZW92166.1|786114_788253_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZW92167.1|788249_789572_+	protein CyaD	NA	NA	NA	NA	NA
AZW92168.1|789573_790998_+	protein CyaE	NA	NA	NA	NA	NA
AZW92169.1|791088_791997_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92170.1|792061_792976_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92171.1|793813_794497_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW92172.1|794513_795257_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZW92173.1|795286_796147_+	aminotransferase	NA	NA	NA	NA	NA
AZW92174.1|796154_796721_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92175.1|796809_797766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92176.1|797810_798563_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92177.1|798559_800305_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZW92178.1|800389_801124_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92179.1|801440_802463_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZW92180.1|802478_803201_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92181.1|803345_804353_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZW92182.1|804393_805926_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZW92183.1|805922_807041_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW92184.1|807037_807820_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW92185.1|807831_808695_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZW94906.1|808713_809811_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92186.1|809879_810806_-	VOC family protein	NA	NA	NA	NA	NA
AZW92187.1|810840_812535_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZW92188.1|812734_813670_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZW92189.1|813775_814726_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92190.1|814824_815481_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW92191.1|815628_818337_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZW92192.1|818346_819366_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZW92193.1|819362_820313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	853060	902324	4108479	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZW92222.1|853060_854011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94907.1|853983_854583_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92223.1|854584_855019_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW92224.1|855015_855450_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92225.1|855433_856237_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZW92226.1|856253_857069_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZW92227.1|857065_857881_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZW92228.1|858027_858729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92229.1|858756_860715_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZW92230.1|860797_861748_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92231.1|861968_862637_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW92232.1|862760_863867_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW92233.1|863879_866993_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZW92234.1|866989_868483_+	RND transporter	NA	NA	NA	NA	NA
AZW92235.1|868497_869169_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW92236.1|869212_869707_-	azurin	NA	NA	NA	NA	NA
AZW92237.1|869847_870495_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW94908.1|870598_872647_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZW92238.1|872643_874656_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZW92239.1|874681_876016_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92240.1|876124_877117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92241.1|877183_879268_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZW92242.1|879292_880264_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92243.1|880392_881394_-	peptidase M14	NA	NA	NA	NA	NA
AZW92244.1|881427_882669_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW92245.1|882749_883673_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZW92246.1|883750_884575_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW94909.1|884771_885788_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW92247.1|885984_886968_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92248.1|888566_889955_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW92249.1|889985_890975_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92250.1|891085_892318_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW92251.1|892599_893400_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92252.1|893422_895654_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW92253.1|896441_896888_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW92254.1|896909_897656_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW92255.1|897799_898777_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW92256.1|899410_900022_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW92257.1|900015_901233_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW92258.1|901373_902324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	911936	976876	4108479	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZW92267.1|911936_912887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92268.1|912883_914734_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW92269.1|915114_915774_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW92270.1|915861_916014_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92271.1|916122_916290_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92272.1|916301_916982_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW92273.1|917263_917980_+	flagellar brake protein	NA	NA	NA	NA	NA
AZW92274.1|917994_919296_-	phospholipase	NA	NA	NA	NA	NA
AZW92275.1|921440_924329_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW92276.1|924552_925905_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW92277.1|925933_926455_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW92278.1|926451_927906_+	carboxylase	NA	NA	NA	NA	NA
AZW92279.1|927940_928189_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92280.1|928294_929170_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92281.1|929195_930251_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92282.1|930263_931055_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92283.1|931087_932458_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW92284.1|933634_934585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92285.1|934637_934859_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92286.1|935018_935231_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92287.1|935350_936469_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW92288.1|936565_936781_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92289.1|936974_937226_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92290.1|937338_938289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92291.1|938285_938669_-	ferredoxin	NA	NA	NA	NA	NA
AZW92292.1|938723_940541_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW94911.1|940687_941515_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW92293.1|941560_942541_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW92294.1|942537_942750_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92295.1|942746_943928_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW92296.1|944091_944826_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW92297.1|944827_947440_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZW92298.1|947575_949489_-	S9 family peptidase	NA	NA	NA	NA	NA
AZW92299.1|950104_950515_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW92300.1|950612_951698_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZW92301.1|951796_952747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92302.1|952743_953718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92303.1|953842_954754_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW94912.1|955030_955423_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW92304.1|955552_956503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92305.1|956532_956715_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW92306.1|956753_957011_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92307.1|957487_958669_-	MFS transporter	NA	NA	NA	NA	NA
AZW92308.1|958884_959562_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW92309.1|959558_960332_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW92310.1|960409_960991_-	OmpA family protein	NA	NA	NA	NA	NA
AZW92311.1|961361_964043_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW92312.1|964042_965176_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW92313.1|965168_966254_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZW92314.1|966340_967240_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW92315.1|967236_968565_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW92316.1|968579_969251_+	cytidylate kinase	NA	NA	NA	NA	NA
AZW92317.1|969423_971154_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW92318.1|971155_971515_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW92319.1|971706_972021_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW92320.1|972063_973284_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW92321.1|973280_974222_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW92322.1|974218_975208_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW92323.1|975242_975827_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW92324.1|975925_976876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	996276	1068792	4108479	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
AZW92339.1|996276_997227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92340.1|997331_998381_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW94914.1|998518_999535_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW92341.1|1001043_1001616_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW92342.1|1001675_1002407_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW94915.1|1002458_1003376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92343.1|1004183_1007363_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW92344.1|1007359_1008742_+	multidrug transporter	NA	NA	NA	NA	NA
AZW92345.1|1008811_1009063_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW92346.1|1009208_1009859_-	SCO family protein	NA	NA	NA	NA	NA
AZW92347.1|1010009_1012124_-	M3 family peptidase	NA	NA	NA	NA	NA
AZW92348.1|1012199_1013051_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW92349.1|1013047_1013674_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW92350.1|1013670_1015425_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW92351.1|1015717_1018423_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW92352.1|1018435_1020097_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW92353.1|1020109_1021900_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW92354.1|1022121_1023297_-	flagellin FliC	NA	NA	NA	NA	NA
AZW92355.1|1024387_1025128_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZW92356.1|1025322_1027359_+	transketolase	NA	NA	NA	NA	NA
AZW92357.1|1027376_1028387_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZW92358.1|1028504_1029698_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZW92359.1|1029727_1030501_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW92360.1|1030497_1031688_-	acetate kinase	NA	NA	NA	NA	NA
AZW92361.1|1031713_1032652_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZW94916.1|1032648_1034997_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZW92362.1|1035151_1035859_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW92363.1|1035896_1037030_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92364.1|1037306_1037855_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW92365.1|1037873_1038359_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW92366.1|1038536_1039475_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW92367.1|1039477_1039795_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92368.1|1039840_1040785_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92369.1|1042465_1043116_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW92370.1|1043169_1043505_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92371.1|1043501_1044362_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW92372.1|1044378_1044660_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92373.1|1044733_1044997_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW92374.1|1045240_1046191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92375.1|1046489_1047227_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW92376.1|1047662_1047986_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW92377.1|1048020_1048581_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW92378.1|1048701_1049577_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW92379.1|1049589_1050537_+	motility protein MotB	NA	NA	NA	NA	NA
AZW92380.1|1050638_1050932_+	response regulator	NA	NA	NA	NA	NA
AZW92381.1|1050958_1053016_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW92382.1|1053030_1053531_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW92383.1|1053604_1055311_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZW92384.1|1056174_1057227_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW92385.1|1057279_1057669_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW92386.1|1057677_1058310_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW94917.1|1058409_1059426_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW94918.1|1060256_1061264_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZW92387.1|1061260_1062904_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZW92388.1|1062900_1063803_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZW92389.1|1063928_1064402_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZW92390.1|1064391_1065414_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZW92391.1|1065410_1066838_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW94919.1|1067775_1068792_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1072545	1134621	4108479	transposase,tRNA,holin	Catovirus(20.0%)	51	NA	NA
AZW92395.1|1072545_1073682_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW92396.1|1073678_1074752_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW92397.1|1074909_1076346_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW94920.1|1076436_1077078_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW94921.1|1077413_1078430_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW92398.1|1080306_1080486_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94922.1|1080472_1081423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94923.1|1082625_1084047_-	siroheme synthase	NA	NA	NA	NA	NA
AZW92399.1|1084310_1085027_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92400.1|1085111_1085429_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZW92401.1|1085469_1085883_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW92402.1|1085884_1086244_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92403.1|1086286_1087831_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZW92404.1|1087914_1088745_+	transglycosylase	NA	NA	NA	NA	NA
AZW92405.1|1088779_1089934_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZW92406.1|1089976_1090849_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92407.1|1090965_1093254_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW92408.1|1094460_1094925_+	barstar family protein 2	NA	NA	NA	NA	NA
AZW92409.1|1094951_1095902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94924.1|1096269_1097046_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW92410.1|1097090_1097948_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW92411.1|1097969_1098986_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW92412.1|1099120_1100161_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW92413.1|1100355_1102437_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW92414.1|1102672_1104166_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZW92415.1|1104396_1105191_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW92416.1|1105411_1106770_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW92417.1|1106766_1107609_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW92418.1|1107627_1109514_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW92419.1|1109751_1110384_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW92420.1|1110402_1111005_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92421.1|1111156_1112107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92422.1|1112909_1113710_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92423.1|1113753_1114740_-	homoserine kinase	NA	NA	NA	NA	NA
AZW92424.1|1114879_1115893_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW92425.1|1115889_1116840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92426.1|1116952_1117411_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW92427.1|1117447_1118761_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92428.1|1118778_1119150_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW92429.1|1119146_1120610_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW92430.1|1120702_1121479_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW92431.1|1121460_1124340_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW92432.1|1124522_1125473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92433.1|1125640_1126465_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZW92434.1|1126464_1127343_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW92435.1|1128247_1129363_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92436.1|1129370_1130186_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZW92437.1|1130182_1132048_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZW92438.1|1132126_1132759_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92439.1|1132755_1133058_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92440.1|1133100_1134621_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1156539	1218710	4108479	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
AZW92454.1|1156539_1157490_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZW92455.1|1157588_1158221_-	fimbrial protein	NA	NA	NA	NA	NA
AZW92456.1|1158385_1160668_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW92457.1|1160822_1163519_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZW92458.1|1163644_1164133_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW92459.1|1166543_1169414_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZW92460.1|1169459_1170674_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZW92461.1|1170903_1172331_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZW92462.1|1172371_1173520_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZW92463.1|1173532_1174291_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92464.1|1174378_1175281_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92465.1|1175277_1176228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92466.1|1176357_1177341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92467.1|1177395_1178118_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW92468.1|1179596_1180952_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZW92469.1|1181032_1183408_-	protein tex	NA	NA	NA	NA	NA
AZW92470.1|1183572_1185648_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZW92471.1|1185709_1186510_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZW92472.1|1186611_1187574_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZW92473.1|1187561_1188317_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZW92474.1|1188424_1190062_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZW92475.1|1190129_1190867_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW92476.1|1190969_1191545_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZW92477.1|1191717_1192254_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92478.1|1192256_1192601_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZW92479.1|1192616_1193462_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZW92480.1|1193500_1194880_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZW92481.1|1194957_1195839_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW92482.1|1195937_1196888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92483.1|1196884_1197295_-	VOC family protein	NA	NA	NA	NA	NA
AZW92484.1|1197402_1198257_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZW92485.1|1198249_1199212_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92486.1|1199257_1200382_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZW94926.1|1200493_1201366_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92487.1|1201490_1202270_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW92488.1|1202423_1203845_+	MFS transporter	NA	NA	NA	NA	NA
AZW92489.1|1204279_1205977_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZW92490.1|1206005_1206128_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94927.1|1206203_1207145_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZW92491.1|1207471_1208218_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92492.1|1208225_1209152_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92493.1|1209273_1210191_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92494.1|1210230_1211184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92495.1|1211208_1211787_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZW92496.1|1213460_1214069_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94928.1|1214146_1214500_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92497.1|1214583_1215573_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW92498.1|1215775_1216726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92499.1|1216812_1217763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92500.1|1217759_1218710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1291673	1328439	4108479	transposase	Salmonella_phage(50.0%)	37	NA	NA
AZW92553.1|1291673_1292624_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92554.1|1293245_1294973_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZW92555.1|1295084_1296443_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW92556.1|1296563_1296749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92557.1|1296735_1297686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92558.1|1297726_1298797_+	FUSC family protein	NA	NA	NA	NA	NA
AZW92559.1|1298819_1299698_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW92560.1|1299869_1300841_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW92561.1|1301003_1301846_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92562.1|1302007_1302688_+	anti-sigma factor	NA	NA	NA	NA	NA
AZW92563.1|1302681_1303851_+	amine oxidase	NA	NA	NA	NA	NA
AZW92564.1|1303847_1304879_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW92565.1|1304922_1306164_+	MFS transporter	NA	NA	NA	NA	NA
AZW92566.1|1306198_1307731_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW92567.1|1307811_1308435_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW92568.1|1308465_1309077_+	LysE family translocator	NA	NA	NA	NA	NA
AZW92569.1|1309112_1309583_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW92570.1|1310014_1311019_+	peptidase M20	NA	NA	NA	NA	NA
AZW92571.1|1311055_1312570_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92572.1|1312573_1313533_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW92573.1|1313561_1314365_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW92574.1|1314366_1316001_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW92575.1|1316084_1317146_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW92576.1|1317344_1317614_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92577.1|1317617_1318142_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW92578.1|1318557_1319508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92579.1|1319504_1320575_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW92580.1|1320647_1321286_+	DedA family protein	NA	NA	NA	NA	NA
AZW92581.1|1321580_1321808_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW92582.1|1321930_1322644_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW92583.1|1322888_1323839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92584.1|1323942_1324224_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92585.1|1324338_1325787_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW92586.1|1325897_1326848_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92587.1|1326844_1327294_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZW92588.1|1327313_1327502_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92589.1|1327488_1328439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1572120	1643274	4108479	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZW92809.1|1572120_1573071_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92810.1|1573092_1574313_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZW92811.1|1574498_1575911_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZW92812.1|1575974_1577042_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZW92813.1|1577038_1578529_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZW94941.1|1578538_1579483_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92814.1|1579642_1580341_+	pirin family protein	NA	NA	NA	NA	NA
AZW92815.1|1580418_1581324_+	pirin family protein	NA	NA	NA	NA	NA
AZW92816.1|1581343_1582294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92817.1|1582392_1583187_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZW92818.1|1583191_1584862_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW92819.1|1584985_1586035_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92820.1|1586356_1587133_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZW92821.1|1587197_1588100_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92822.1|1589393_1590197_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZW92823.1|1592890_1593277_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZW92824.1|1593292_1595383_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZW92825.1|1595434_1596388_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZW94942.1|1596402_1597290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92826.1|1597427_1598954_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZW94943.1|1599052_1599553_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZW92827.1|1599876_1601832_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW92828.1|1601999_1604084_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92829.1|1604110_1604896_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZW92830.1|1605751_1606522_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZW92831.1|1606521_1607262_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW92832.1|1607303_1608473_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZW92833.1|1608504_1610589_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZW92834.1|1610585_1611476_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZW92835.1|1611472_1612570_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW92836.1|1612592_1613882_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZW92837.1|1613893_1614919_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZW92838.1|1614915_1616973_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZW92839.1|1616986_1618162_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZW92840.1|1618243_1619194_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92841.1|1619252_1620026_+	oxidoreductase	NA	NA	NA	NA	NA
AZW92842.1|1620018_1621575_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZW92843.1|1621571_1622522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92844.1|1623848_1624451_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92845.1|1624690_1625392_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW92846.1|1625385_1626168_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW92847.1|1626352_1627303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92848.1|1627401_1628139_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW92849.1|1628328_1629087_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92850.1|1629133_1630123_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92851.1|1630300_1631269_-	transporter	NA	NA	NA	NA	NA
AZW92852.1|1632808_1633777_+	AAA family ATPase	NA	NA	NA	NA	NA
AZW92853.1|1633785_1634727_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW92854.1|1635200_1636211_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94944.1|1636201_1637716_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW92855.1|1637712_1639059_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94945.1|1639061_1640096_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW92856.1|1640145_1641771_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW92857.1|1642323_1643274_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1664065	1725413	4108479	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZW92871.1|1664065_1665016_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94951.1|1665309_1666032_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW92872.1|1666470_1667658_-	MFS transporter	NA	NA	NA	NA	NA
AZW92873.1|1667661_1668042_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92874.1|1669761_1670733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW92875.1|1670746_1671460_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW92876.1|1671464_1672382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92877.1|1672488_1672785_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92878.1|1672883_1673834_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92879.1|1674992_1677926_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZW92880.1|1677925_1678270_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZW92881.1|1678266_1679895_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZW92882.1|1679891_1680371_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZW92883.1|1680367_1680652_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZW92884.1|1680648_1680975_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZW92885.1|1681130_1682081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92886.1|1682124_1682667_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92887.1|1682764_1683613_+	hydrolase	NA	NA	NA	NA	NA
AZW92888.1|1683605_1684112_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZW92889.1|1684108_1685110_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZW92890.1|1685122_1685917_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW92891.1|1685965_1687867_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW92892.1|1687863_1688487_-	hypothetical protein	NA	NA	NA	NA	NA
AZW92893.1|1688613_1689738_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92894.1|1690055_1691723_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZW92895.1|1691878_1692655_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZW92896.1|1692739_1693738_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92897.1|1693734_1694508_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW92898.1|1695492_1696443_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92899.1|1696466_1696931_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZW92900.1|1697077_1698286_+	flavohemoprotein	NA	NA	NA	NA	NA
AZW92901.1|1698296_1698767_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW92902.1|1698885_1700175_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW92903.1|1702915_1703866_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92904.1|1703964_1704981_-	folate-binding protein	NA	NA	NA	NA	NA
AZW92905.1|1705147_1706194_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZW92906.1|1706190_1706817_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZW92907.1|1706813_1707866_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZW92908.1|1707915_1708686_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW92909.1|1708736_1709573_+	hypothetical protein	NA	NA	NA	NA	NA
AZW92910.1|1709768_1710509_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92911.1|1710583_1711327_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92912.1|1711988_1712762_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZW92913.1|1713899_1715189_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZW92914.1|1716799_1718047_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW92915.1|1718056_1719766_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZW92916.1|1719762_1720701_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW92917.1|1720697_1721981_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW92918.1|1721984_1722467_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW92919.1|1722467_1723454_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW92920.1|1723626_1724346_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW92921.1|1724462_1725413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1831601	1890871	4108479	protease,transposase,tRNA	Klosneuvirus(40.0%)	49	NA	NA
AZW92998.1|1831601_1832552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW92999.1|1832676_1833486_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW93000.1|1833686_1834637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93001.1|1835910_1837128_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZW93002.1|1838184_1839087_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93003.1|1839163_1840036_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZW93004.1|1840166_1840535_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZW93005.1|1840592_1841639_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZW93006.1|1841834_1843091_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW93007.1|1843095_1844433_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93008.1|1844582_1845539_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93009.1|1847011_1847362_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93010.1|1847409_1848984_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93011.1|1849036_1849981_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW93012.1|1849998_1850829_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW93013.1|1850821_1852456_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZW93014.1|1852452_1853808_+	amidase	NA	NA	NA	NA	NA
AZW93015.1|1854714_1856292_+	lipoprotein	NA	NA	NA	NA	NA
AZW93016.1|1856295_1857570_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94957.1|1857667_1858042_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93017.1|1859757_1860891_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZW93018.1|1860928_1861534_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZW93019.1|1861530_1862349_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93020.1|1862420_1865045_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZW93021.1|1865031_1865286_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZW93022.1|1865352_1865934_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93023.1|1866237_1866498_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZW93024.1|1866663_1867287_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZW93025.1|1867286_1868060_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZW93026.1|1868056_1869265_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZW93027.1|1869290_1869764_-	RidA family protein	NA	NA	NA	NA	NA
AZW93028.1|1869837_1870788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93029.1|1870886_1871837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93030.1|1871935_1873285_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW93031.1|1874050_1874806_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZW93032.1|1874898_1877781_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZW93033.1|1878103_1878529_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZW93034.1|1878556_1879705_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZW93035.1|1879701_1880208_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW93036.1|1880214_1881510_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZW93037.1|1881550_1882855_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW93038.1|1882856_1883495_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93039.1|1883497_1884658_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZW93040.1|1884684_1886040_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZW93041.1|1886043_1887114_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZW93042.1|1887252_1887489_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZW93043.1|1887576_1888683_+	GTPase HflX	NA	NA	NA	NA	NA
AZW93044.1|1888648_1889953_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZW93045.1|1889971_1890871_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1901111	1944385	4108479	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AZW93053.1|1901111_1902062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93054.1|1902160_1903111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93055.1|1903097_1903298_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93056.1|1903310_1904396_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZW93057.1|1904411_1905173_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW93058.1|1905169_1906093_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZW93059.1|1906191_1906716_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW93060.1|1906724_1907468_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZW93061.1|1907563_1907803_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93062.1|1907816_1907969_-	lipoprotein	NA	NA	NA	NA	NA
AZW93063.1|1908054_1909545_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZW93064.1|1909636_1910575_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZW93065.1|1910571_1910748_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZW93066.1|1910750_1911413_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZW94959.1|1913034_1913178_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZW93067.1|1913174_1914149_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93068.1|1914315_1915266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93069.1|1915262_1916537_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZW93070.1|1916634_1917834_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZW93071.1|1917830_1918484_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93072.1|1918480_1919917_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZW93073.1|1919904_1920264_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZW93074.1|1921236_1922187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93075.1|1922183_1924049_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW94960.1|1924306_1925827_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW93076.1|1925914_1926565_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZW93077.1|1927513_1928809_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZW93078.1|1928830_1929715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94961.1|1929813_1930689_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW93079.1|1930678_1931035_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZW93080.1|1931108_1932140_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW93081.1|1932269_1932449_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZW93082.1|1932546_1933071_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZW93083.1|1933081_1933918_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93084.1|1934030_1934402_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW93085.1|1934398_1934950_+	ATPase	NA	NA	NA	NA	NA
AZW93086.1|1934965_1936657_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZW93087.1|1936705_1937386_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93088.1|1937633_1938098_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93089.1|1938267_1939197_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW93090.1|1939209_1939857_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93091.1|1939930_1941748_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZW93092.1|1941831_1942782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93093.1|1943434_1944385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	1957591	1996120	4108479	transposase	Erysipelothrix_phage(100.0%)	37	NA	NA
AZW94963.1|1957591_1958608_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW93105.1|1958750_1960103_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZW93106.1|1960277_1960574_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93107.1|1961711_1962662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93108.1|1962760_1963711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93109.1|1964196_1964373_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93110.1|1964344_1964983_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93111.1|1965057_1966029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93112.1|1966032_1966887_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZW93113.1|1966905_1967727_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93114.1|1967758_1968553_+	amidase	NA	NA	NA	NA	NA
AZW93115.1|1968601_1969207_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94964.1|1969203_1969998_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW93116.1|1970283_1971789_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZW93117.1|1971830_1972613_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZW93118.1|1972682_1973129_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93119.1|1973125_1974352_-	NnrS family protein	NA	NA	NA	NA	NA
AZW93120.1|1974344_1974749_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZW93121.1|1974908_1975211_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZW93122.1|1975207_1976158_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93123.1|1976144_1976336_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93124.1|1976379_1977330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93125.1|1977428_1978394_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93126.1|1978531_1979431_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93127.1|1982025_1983513_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93128.1|1983523_1984720_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZW93129.1|1984792_1986112_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZW93130.1|1986108_1986984_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93131.1|1987014_1988184_-	CoA transferase	NA	NA	NA	NA	NA
AZW93132.1|1988180_1988495_-	ferredoxin	NA	NA	NA	NA	NA
AZW93133.1|1988516_1989239_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW93134.1|1989238_1990057_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW93135.1|1990061_1990589_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZW93136.1|1990594_1991860_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZW93137.1|1992209_1993349_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93138.1|1993426_1994299_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW93139.1|1995169_1996120_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2132731	2196820	4108479	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
AZW93244.1|2132731_2134000_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93245.1|2134570_2134783_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93246.1|2134800_2135532_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93247.1|2135566_2136208_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW93248.1|2136200_2136917_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW93249.1|2139081_2139858_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW93250.1|2139879_2141037_-	thiolase	NA	NA	NA	NA	NA
AZW93251.1|2141033_2141465_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93252.1|2141461_2142265_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW93253.1|2142278_2142734_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW93254.1|2142746_2143718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93255.1|2143783_2145007_-	CoA transferase	NA	NA	NA	NA	NA
AZW93256.1|2145234_2146185_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93257.1|2146308_2148762_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW93258.1|2148950_2150255_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW93259.1|2150359_2151013_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW93260.1|2151015_2152326_-	trigger factor	NA	NA	NA	NA	NA
AZW93261.1|2152504_2153083_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW93262.1|2153194_2153395_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW93263.1|2153740_2154307_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW93264.1|2154390_2154594_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW93265.1|2154900_2155221_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93266.1|2155262_2155544_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93267.1|2155618_2156875_-	autotransporter Phg	NA	NA	NA	NA	NA
AZW93268.1|2157257_2157587_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW93269.1|2159156_2159978_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW93270.1|2159977_2161117_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW93271.1|2161123_2162020_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW93272.1|2162016_2163942_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW93273.1|2164301_2166914_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW93274.1|2166966_2169267_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW93275.1|2169263_2170472_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW93276.1|2170733_2171108_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93277.1|2171104_2172055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94971.1|2172153_2174148_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZW93278.1|2174207_2175173_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZW93279.1|2175162_2178024_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZW93280.1|2178026_2178533_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZW93281.1|2178637_2179846_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZW93282.1|2179847_2180786_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93283.1|2180947_2181421_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW93284.1|2181417_2182368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93285.1|2182354_2182534_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93286.1|2182478_2182919_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZW93287.1|2183047_2184277_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZW93288.1|2184315_2185137_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZW93289.1|2185190_2186342_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW93290.1|2186433_2186922_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZW93291.1|2189448_2192022_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW93292.1|2192092_2194666_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW93293.1|2194931_2195132_+	CsbD family protein	NA	NA	NA	NA	NA
AZW93294.1|2195163_2195325_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZW93295.1|2195382_2195721_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZW93296.1|2195869_2196820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2212790	2231530	4108479	transposase,tRNA	Moraxella_phage(40.0%)	16	NA	NA
AZW94975.1|2212790_2213807_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW93311.1|2213904_2214945_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZW93312.1|2215079_2216372_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZW93313.1|2217731_2218115_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZW93314.1|2218132_2218720_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZW93315.1|2218757_2219708_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93316.1|2219806_2220757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93317.1|2220855_2221416_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZW93318.1|2221412_2221958_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93319.1|2222153_2223182_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93320.1|2223222_2224563_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZW93321.1|2224671_2225676_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93322.1|2225782_2228383_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZW93323.1|2228481_2229432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93324.1|2229530_2230481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93325.1|2230579_2231530_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2578633	2645133	4108479	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZW93619.1|2578633_2579584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93620.1|2579953_2580526_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZW93621.1|2580528_2581539_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZW93622.1|2581531_2582032_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZW93623.1|2582042_2582384_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZW93624.1|2582395_2583187_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZW93625.1|2583203_2583473_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZW93626.1|2583495_2584284_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZW94991.1|2584330_2585347_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW93627.1|2585563_2587006_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZW93628.1|2587184_2588804_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZW93629.1|2588924_2590745_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZW93630.1|2590823_2592356_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZW93631.1|2592389_2594036_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZW93632.1|2594105_2595128_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZW93633.1|2595145_2596279_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZW93634.1|2596281_2596971_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZW93635.1|2596970_2597756_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZW93636.1|2597799_2598564_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZW93637.1|2598602_2600024_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZW93638.1|2600089_2600794_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZW93639.1|2600841_2601261_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZW93640.1|2601273_2601681_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZW94992.1|2601864_2602575_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZW93641.1|2602701_2602992_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZW93642.1|2603009_2603492_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZW93643.1|2607997_2609152_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZW94993.1|2609457_2610474_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW93644.1|2610720_2611509_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93645.1|2611575_2612256_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW93646.1|2612252_2613023_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZW93647.1|2613121_2614072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93648.1|2614127_2615045_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZW93649.1|2615055_2616234_-	mandelate racemase	NA	NA	NA	NA	NA
AZW93650.1|2616253_2617249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93651.1|2618837_2619446_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZW93652.1|2619433_2620474_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW93653.1|2620491_2621454_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93654.1|2621450_2622644_-	CoA transferase	NA	NA	NA	NA	NA
AZW93655.1|2622640_2623438_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZW93656.1|2623463_2624450_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93657.1|2624468_2626508_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZW94994.1|2626709_2627390_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93658.1|2627403_2628315_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW93659.1|2628311_2628890_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW93660.1|2629028_2629934_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93661.1|2629941_2633361_+	nuclease	NA	NA	NA	NA	NA
AZW93662.1|2633348_2635949_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZW93663.1|2636904_2637537_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93664.1|2637930_2638689_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93665.1|2638685_2639888_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW93666.1|2640075_2641026_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93667.1|2641933_2643079_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW94995.1|2643098_2643821_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93668.1|2643937_2644117_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93669.1|2644182_2645133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2673248	2710660	4108479	transposase	Planktothrix_phage(33.33%)	39	NA	NA
AZW93684.1|2673248_2674199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93685.1|2674297_2675248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93686.1|2675340_2675880_+	peroxiredoxin	NA	NA	NA	NA	NA
AZW93687.1|2675986_2676331_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZW93688.1|2676388_2677837_-	CoA transferase	NA	NA	NA	NA	NA
AZW93689.1|2678024_2678360_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW93690.1|2679987_2681166_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZW93691.1|2681248_2681749_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZW93692.1|2681774_2682560_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZW93693.1|2682571_2683036_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW93694.1|2683032_2683326_+	biotin--protein ligase	NA	NA	NA	NA	NA
AZW93695.1|2683322_2684099_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZW93696.1|2684127_2684955_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZW93697.1|2685080_2685551_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93698.1|2685677_2686571_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZW93699.1|2686618_2687800_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW93700.1|2687812_2688628_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93701.1|2688761_2689289_-	RES domain-containing protein	NA	NA	NA	NA	NA
AZW94998.1|2689285_2689783_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZW93702.1|2689930_2690308_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZW93703.1|2690529_2691480_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94999.1|2691578_2692190_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93704.1|2692424_2693552_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93705.1|2693662_2694751_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZW93706.1|2694803_2695655_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZW93707.1|2695674_2696556_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZW95000.1|2696732_2698046_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZW93708.1|2698256_2699090_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZW93709.1|2699086_2699668_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZW93710.1|2700021_2700972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93711.1|2700987_2702103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93712.1|2702205_2703132_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZW93713.1|2703131_2704370_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZW93714.1|2704366_2705134_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZW93715.1|2705134_2705836_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZW95001.1|2705917_2706364_-	glutamate racemase	NA	NA	NA	NA	NA
AZW93716.1|2707253_2707892_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZW93717.1|2708660_2709611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93718.1|2709709_2710660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2816121	2873279	4108479	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
AZW93807.1|2816121_2817072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95008.1|2818233_2818740_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZW93808.1|2818736_2819501_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZW93809.1|2819516_2819801_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZW93810.1|2819865_2820855_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZW93811.1|2821026_2821956_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZW93812.1|2821927_2822614_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZW93813.1|2822647_2823193_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZW93814.1|2823237_2824503_+	peptidase M48	NA	NA	NA	NA	NA
AZW93815.1|2824499_2825402_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZW93816.1|2826583_2827528_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW93817.1|2827622_2829140_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93818.1|2829181_2830810_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW93819.1|2830917_2831799_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93820.1|2834911_2835286_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZW93821.1|2835310_2835649_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZW93822.1|2835692_2837327_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZW93823.1|2837365_2838712_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW95009.1|2838819_2840241_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZW93824.1|2840310_2840895_-	nitroreductase	NA	NA	NA	NA	NA
AZW93825.1|2840997_2841948_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93826.1|2842082_2843189_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93827.1|2843199_2844297_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZW93828.1|2844441_2845647_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW93829.1|2845653_2846175_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZW93830.1|2846171_2846663_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZW93831.1|2846659_2846911_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZW93832.1|2846891_2847377_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZW93833.1|2847512_2850974_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93834.1|2850970_2851876_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZW93835.1|2851885_2852317_-	lipoprotein	NA	NA	NA	NA	NA
AZW95010.1|2852563_2853067_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZW93836.1|2853078_2854545_+	MFS transporter	NA	NA	NA	NA	NA
AZW93837.1|2854619_2855495_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95011.1|2855491_2856499_-	biotin synthase	NA	NA	NA	NA	NA
AZW93838.1|2856966_2857272_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW93839.1|2857362_2857953_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95012.1|2858143_2859160_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW93840.1|2859351_2861688_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZW93841.1|2861770_2862205_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW93842.1|2862303_2863254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93843.1|2863352_2864303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93844.1|2864299_2865094_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW93845.1|2865125_2865830_-	oxidoreductase	NA	NA	NA	NA	NA
AZW93846.1|2865904_2866705_-	SURF1 family protein	NA	NA	NA	NA	NA
AZW93847.1|2866701_2867109_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW93848.1|2867105_2867747_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW93849.1|2867739_2869761_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW93850.1|2871000_2872332_+	MFS transporter	NA	NA	NA	NA	NA
AZW93851.1|2872328_2873279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2906516	2972394	4108479	protease,transposase	uncultured_Mediterranean_phage(22.22%)	60	NA	NA
AZW93867.1|2906516_2906831_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW93868.1|2907058_2907304_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW93869.1|2907398_2907917_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW93870.1|2908016_2909222_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW93871.1|2909337_2910735_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW93872.1|2910851_2911430_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW93873.1|2911502_2912894_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW93874.1|2913061_2914012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93875.1|2914292_2914913_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW93876.1|2914909_2915323_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW93877.1|2915319_2916363_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW93878.1|2916418_2916607_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93879.1|2916616_2917381_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW93880.1|2917471_2918128_+	adenylate kinase	NA	NA	NA	NA	NA
AZW93881.1|2918219_2918978_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW93882.1|2919003_2920605_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW93883.1|2920805_2921810_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW93884.1|2921910_2922174_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW93885.1|2922291_2923068_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW93886.1|2926991_2928104_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZW93887.1|2928160_2929111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93888.1|2929319_2929541_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
AZW93889.1|2929754_2931161_-	threonine synthase	NA	NA	NA	NA	NA
AZW93890.1|2931157_2932462_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
AZW93891.1|2932458_2933766_-	alanine transaminase	NA	NA	NA	NA	NA
AZW93892.1|2933862_2934315_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93893.1|2934317_2934782_+	peroxiredoxin	NA	NA	NA	NA	NA
AZW93894.1|2934861_2936541_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
AZW93895.1|2936645_2937623_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
AZW93896.1|2937702_2938671_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
AZW93897.1|2938691_2940065_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
AZW93898.1|2940061_2940898_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93899.1|2941014_2941470_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AZW93900.1|2941485_2941758_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
AZW93901.1|2941850_2942174_-	primosomal replication protein N	NA	NA	NA	NA	NA
AZW93902.1|2942221_2942602_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
AZW93903.1|2942821_2943619_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
AZW93904.1|2943775_2945638_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
AZW93905.1|2945687_2946599_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AZW93906.1|2946603_2946870_-	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA	NA
AZW95014.1|2946956_2947787_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93907.1|2947961_2948927_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93908.1|2949097_2950108_+	hypothetical protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
AZW93909.1|2950114_2951407_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZW93910.1|2952549_2954022_-	magnesium transporter	NA	NA	NA	NA	NA
AZW93911.1|2954032_2954443_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW93912.1|2954506_2955553_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
AZW93913.1|2955659_2956538_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93914.1|2956551_2957748_-	amidohydrolase	NA	NA	NA	NA	NA
AZW93915.1|2957809_2959501_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
AZW93916.1|2959497_2960448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93917.1|2960434_2960680_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93918.1|2960568_2961465_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZW93919.1|2963742_2965968_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW93920.1|2966132_2967221_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW93921.1|2967177_2967831_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW93922.1|2967878_2968676_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93923.1|2969207_2970158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93924.1|2970238_2971387_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW93925.1|2971443_2972394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	2982169	3034774	4108479	transposase	Ostreococcus_lucimarinus_virus(16.67%)	48	NA	NA
AZW93936.1|2982169_2983408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93937.1|2983449_2984712_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW93938.1|2984718_2985471_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW93939.1|2985522_2985708_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95017.1|2985983_2986448_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW93940.1|2986479_2987139_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW93941.1|2987283_2989392_+	AsmA family protein	NA	NA	NA	NA	NA
AZW93942.1|2989388_2990339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93943.1|2990442_2991063_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95018.1|2991166_2991907_+	oxidoreductase	NA	NA	NA	NA	NA
AZW93944.1|2993041_2994166_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93945.1|2994211_2994580_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93946.1|2994821_2995772_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93947.1|2996807_2997350_-	hypothetical protein	NA	NA	NA	NA	NA
AZW93948.1|2997554_2997749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW93949.1|2997735_2998686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93950.1|2998682_2999648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93951.1|2999717_3000554_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZW93952.1|3001030_3002176_+	porin	NA	NA	NA	NA	NA
AZW93953.1|3002237_3003188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93954.1|3003380_3004163_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW95019.1|3004176_3004926_-	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZW95020.1|3004953_3006300_-	MFS transporter	NA	NA	NA	NA	NA
AZW93955.1|3006325_3007255_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW93956.1|3007370_3008276_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93957.1|3008293_3009493_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW93958.1|3009565_3010258_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZW95021.1|3010306_3012796_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZW93959.1|3013943_3014312_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZW93960.1|3014598_3015525_+	VOC family protein	NA	NA	NA	NA	NA
AZW93961.1|3015568_3016579_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW93962.1|3016575_3017010_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW93963.1|3018135_3018924_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZW93964.1|3018933_3019716_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW93965.1|3019719_3020811_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW93966.1|3020916_3022392_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZW93967.1|3022533_3023082_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW93968.1|3023097_3023559_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW93969.1|3023659_3024649_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW93970.1|3024947_3025649_+	riboflavin synthase	NA	NA	NA	NA	NA
AZW93971.1|3025687_3027061_-	amidase	NA	NA	NA	NA	NA
AZW93972.1|3027099_3028386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW93973.1|3029272_3030175_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93974.1|3030122_3031343_-	MFS transporter	NA	NA	NA	NA	NA
AZW93975.1|3031339_3031849_-	nucleoside deaminase	NA	NA	NA	NA	NA
AZW93976.1|3031838_3032534_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZW93977.1|3032604_3033474_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW93978.1|3033823_3034774_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	3236701	3271539	4108479	transposase,holin	Erwinia_phage(20.0%)	36	NA	NA
AZW94134.1|3236701_3237652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94135.1|3238096_3238408_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZW94136.1|3238407_3238938_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94137.1|3239100_3240051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94138.1|3240340_3240805_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZW94139.1|3240819_3242325_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZW94140.1|3242578_3244186_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW94141.1|3244241_3245147_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW94142.1|3245587_3246538_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94143.1|3246636_3247587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94144.1|3247668_3248250_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZW95036.1|3248674_3248980_+	RND transporter	NA	NA	NA	NA	NA
AZW94145.1|3248993_3250328_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZW94146.1|3250349_3250889_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZW94147.1|3251036_3251501_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZW94148.1|3251643_3252759_-	GTP-binding protein	NA	NA	NA	NA	NA
AZW94149.1|3253035_3253539_-	transcriptional repressor	NA	NA	NA	NA	NA
AZW94150.1|3253676_3253877_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94151.1|3253867_3254590_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZW94152.1|3254586_3255483_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZW94153.1|3255479_3256415_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95037.1|3256420_3257044_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZW94154.1|3257034_3258003_+	nickel transporter	NA	NA	NA	NA	NA
AZW94155.1|3258051_3260193_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW94156.1|3260205_3261186_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZW94157.1|3261200_3261893_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZW94158.1|3261919_3262831_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZW94159.1|3262873_3263764_-	acyltransferase	NA	NA	NA	NA	NA
AZW94160.1|3263760_3264615_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZW94161.1|3264763_3266062_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZW94162.1|3266172_3266424_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZW94163.1|3266503_3267544_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZW94164.1|3267823_3269242_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZW94165.1|3269312_3269648_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW94166.1|3269647_3270490_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZW94167.1|3270588_3271539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	3283368	3334246	4108479	integrase,protease,transposase,tRNA	Planktothrix_phage(33.33%)	39	3317042:3317060	3336930:3336948
AZW94176.1|3283368_3284319_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95039.1|3284631_3286110_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZW94177.1|3286116_3287226_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZW94178.1|3287237_3287918_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW94179.1|3287939_3288695_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95040.1|3288830_3289715_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW94180.1|3289802_3290384_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94181.1|3290476_3290599_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94182.1|3290644_3290944_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW95041.1|3291095_3291521_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94183.1|3293727_3294231_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW94184.1|3294246_3295197_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94185.1|3295183_3295381_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94186.1|3295724_3296498_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW94187.1|3296630_3297641_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW94188.1|3297792_3299448_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZW94189.1|3299502_3299844_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW94190.1|3299857_3301297_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW94191.1|3301429_3302245_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94192.1|3302437_3303388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94193.1|3304775_3305723_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94194.1|3305949_3306690_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94195.1|3306775_3307726_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94196.1|3309167_3310739_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZW94197.1|3311071_3312925_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94198.1|3312969_3315534_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW94199.1|3315952_3316903_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3317042:3317060	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZW94200.1|3319768_3320263_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZW94201.1|3320279_3321230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94202.1|3321216_3321417_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94203.1|3321413_3322625_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZW94204.1|3322640_3325592_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZW94205.1|3325593_3328713_-	restriction endonuclease	NA	NA	NA	NA	NA
AZW95042.1|3328709_3328850_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZW94206.1|3328860_3329907_-	Fic family protein	NA	NA	NA	NA	NA
AZW94207.1|3330248_3331376_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZW94208.1|3331655_3332747_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZW94209.1|3332819_3333602_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZW94210.1|3333598_3334246_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3336930:3336948	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	3383133	3436874	4108479	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZW94247.1|3383133_3384084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94248.1|3384488_3385133_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZW94249.1|3385157_3385742_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZW94250.1|3385842_3386460_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZW94251.1|3386462_3388178_-	urease subunit alpha	NA	NA	NA	NA	NA
AZW94252.1|3388174_3388483_-	urease subunit beta	NA	NA	NA	NA	NA
AZW94253.1|3388499_3389135_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZW94254.1|3389161_3389464_-	urease subunit gamma	NA	NA	NA	NA	NA
AZW94255.1|3389564_3390419_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZW94256.1|3391000_3391273_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW94257.1|3391690_3392098_-	GFA family protein	NA	NA	NA	NA	NA
AZW94258.1|3392467_3393262_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94259.1|3393362_3394598_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW94260.1|3394666_3395683_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW94261.1|3395679_3397071_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW94262.1|3397067_3398264_+	MFS transporter	NA	NA	NA	NA	NA
AZW94263.1|3398260_3399799_-	SpoVR family protein	NA	NA	NA	NA	NA
AZW94264.1|3399795_3401055_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94265.1|3402995_3403946_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94266.1|3404712_3405807_-	CoA transferase	NA	NA	NA	NA	NA
AZW94267.1|3405799_3407134_-	CoA ligase	NA	NA	NA	NA	NA
AZW94268.1|3407087_3407771_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94269.1|3407796_3408960_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW94270.1|3408956_3409958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW94271.1|3409957_3410830_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW94272.1|3410826_3411576_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW94273.1|3411572_3412364_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW94274.1|3412360_3413500_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW94275.1|3413808_3414561_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW94276.1|3414594_3415377_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW94277.1|3415380_3415770_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW94278.1|3416909_3417773_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW94279.1|3417808_3418897_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94280.1|3418893_3419844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94281.1|3419830_3420199_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94282.1|3420197_3423176_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94283.1|3424102_3424981_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZW94284.1|3426929_3427880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94285.1|3427876_3428344_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW94286.1|3428386_3429157_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW94287.1|3429177_3429978_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW94288.1|3429988_3431398_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZW94289.1|3431492_3432278_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW95045.1|3432517_3433534_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW94290.1|3433641_3434034_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW94291.1|3434171_3434852_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW94292.1|3434856_3435855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW94293.1|3435923_3436874_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	3443029	3502327	4108479	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZW94297.1|3443029_3444793_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW94298.1|3444904_3445783_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW94299.1|3445895_3446711_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW94300.1|3446714_3446966_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW95046.1|3447050_3448067_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW94301.1|3448397_3448619_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94302.1|3450979_3451897_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW94303.1|3452394_3453603_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW94304.1|3453682_3455254_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW94305.1|3455371_3456307_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW94306.1|3456495_3457440_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW94307.1|3457508_3457724_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94308.1|3458007_3463725_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW94309.1|3463730_3464858_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW94310.1|3464913_3465540_+	aminotransferase	NA	NA	NA	NA	NA
AZW95047.1|3465811_3466828_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW94311.1|3466923_3467634_-	oxidoreductase	NA	NA	NA	NA	NA
AZW95048.1|3467630_3468620_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW94312.1|3468751_3470347_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZW94313.1|3470349_3471087_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94314.1|3471242_3472115_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZW94315.1|3472383_3473604_+	MFS transporter	NA	NA	NA	NA	NA
AZW94316.1|3473600_3474260_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW94317.1|3474331_3474964_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW94318.1|3474993_3475512_+	flavin reductase	NA	NA	NA	NA	NA
AZW94319.1|3475522_3476632_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW94320.1|3476678_3477533_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW94321.1|3477534_3478437_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94322.1|3479659_3480610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94323.1|3482364_3483354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94324.1|3483529_3484318_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW94325.1|3484314_3485346_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW94326.1|3485364_3485928_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW94327.1|3485983_3487504_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW94328.1|3487767_3488472_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW94329.1|3488479_3489217_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW94330.1|3489322_3489697_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW94331.1|3489739_3491029_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94332.1|3491025_3492195_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW94333.1|3492191_3493031_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW94334.1|3493090_3494026_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW94335.1|3494038_3494989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94336.1|3495087_3496050_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW94337.1|3496081_3496441_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW94338.1|3496565_3497468_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW94339.1|3497469_3499242_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW94340.1|3499276_3500053_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW94341.1|3501376_3502327_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025350	Bordetella pertussis strain I958 chromosome, complete genome	4108479	3517265	3575338	4108479	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZW94353.1|3517265_3518216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94354.1|3518344_3519478_-	peptidase	NA	NA	NA	NA	NA
AZW94355.1|3519521_3520427_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW94356.1|3520429_3522130_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW94357.1|3522126_3523047_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW94358.1|3523054_3524032_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW94359.1|3524090_3525125_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW94360.1|3527099_3527336_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94361.1|3527462_3528326_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW94362.1|3528414_3529236_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW94363.1|3529315_3530053_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW94364.1|3530049_3531042_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW94365.1|3531155_3531818_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94366.1|3531862_3533011_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW94367.1|3535334_3536285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94368.1|3536625_3537576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94369.1|3537674_3538625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94370.1|3538921_3539419_+	hypothetical protein	NA	NA	NA	NA	NA
AZW94371.1|3539461_3541237_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW95051.1|3541283_3542111_+	copper resistance protein B	NA	NA	NA	NA	NA
AZW94372.1|3542117_3542852_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW94373.1|3544021_3544816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW94374.1|3545105_3545696_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW94375.1|3545729_3547058_-	amidase	NA	NA	NA	NA	NA
AZW94376.1|3547132_3548278_-	transporter	NA	NA	NA	NA	NA
AZW94377.1|3548389_3549388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94378.1|3549350_3549785_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW94379.1|3551301_3552186_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW94380.1|3552182_3553388_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW94381.1|3553384_3554245_-	endonuclease	NA	NA	NA	NA	NA
AZW94382.1|3554357_3556148_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW94383.1|3556188_3556854_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW94384.1|3556854_3557163_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW95052.1|3557328_3558615_-	hypothetical protein	NA	NA	NA	NA	NA
AZW94385.1|3560048_3560999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW94386.1|3562950_3564165_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW94387.1|3564270_3565260_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW94388.1|3565256_3565865_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW94389.1|3565877_3566507_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW94390.1|3566503_3567124_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW94391.1|3567155_3567947_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW94392.1|3568789_3569254_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW94393.1|3569272_3570199_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW94394.1|3570252_3571539_-	cytochrome c	NA	NA	NA	NA	NA
AZW94395.1|3572469_3573342_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW94396.1|3573338_3574289_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW94397.1|3574387_3575338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
