assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004008095.1_ASM400809v1	CP025069	Bordetella bronchiseptica strain I124 chromosome, complete genome	1	843158-843264	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GATGGTGCCTGGGGAGCCAGGCACCGGAGG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|374aa|up_9|CP025069.1_830223_831345_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|385aa|up_8|CP025069.1_831341_832496_+	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins	NA|377aa|up_7|CP025069.1_832492_833623_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|522aa|up_6|CP025069.1_833630_835196_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|461aa|up_5|CP025069.1_835203_836586_-	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|204aa|up_4|CP025069.1_836865_837477_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|472aa|up_3|CP025069.1_837569_838985_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|237aa|up_2|CP025069.1_839002_839713_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|442aa|up_1|CP025069.1_839709_841035_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|654aa|up_0|CP025069.1_841115_843077_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|438aa|down_0|CP025069.1_843267_844581_-	TIGR01266, fum_ac_acetase, fumarylacetoacetase	NA|433aa|down_1|CP025069.1_844687_845986_-	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|303aa|down_2|CP025069.1_846168_847077_+	cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold	NA|70aa|down_3|CP025069.1_847086_847296_-	pfam10932, DUF2783, Protein of unknown function (DUF2783)	NA|560aa|down_4|CP025069.1_847307_848987_-	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional	NA|318aa|down_5|CP025069.1_849088_850042_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|276aa|down_6|CP025069.1_850131_850959_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|629aa|down_7|CP025069.1_850957_852844_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|200aa|down_8|CP025069.1_852840_853440_+	PRK00022, lolB, lipoprotein localization protein LolB	NA|300aa|down_9|CP025069.1_853487_854387_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
GCA_004008095.1_ASM400809v1	CP025069	Bordetella bronchiseptica strain I124 chromosome, complete genome	2	1137956-1138048	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	CAGGCACCCGCGGCATGCAGCCTGCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|247aa|up_9|CP025069.1_1126837_1127578_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|up_8|CP025069.1_1127706_1128483_-	PRK06224, PRK06224, citryl-CoA lyase	NA|174aa|up_7|CP025069.1_1128484_1129006_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|389aa|up_6|CP025069.1_1129002_1130169_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|251aa|up_5|CP025069.1_1130198_1130951_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|703aa|up_4|CP025069.1_1131210_1133319_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|325aa|up_3|CP025069.1_1133373_1134348_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|350aa|up_2|CP025069.1_1134359_1135409_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|208aa|up_1|CP025069.1_1135409_1136033_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|584aa|up_0|CP025069.1_1136047_1137799_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|290aa|down_0|CP025069.1_1138093_1138963_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|232aa|down_1|CP025069.1_1139033_1139729_+	sd00045, ANK, ankyrin repeats	NA|168aa|down_2|CP025069.1_1139718_1140222_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|411aa|down_3|CP025069.1_1140218_1141451_+	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|301aa|down_4|CP025069.1_1141398_1142301_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|324aa|down_5|CP025069.1_1142453_1143425_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|458aa|down_6|CP025069.1_1143463_1144837_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|234aa|down_7|CP025069.1_1144874_1145576_-	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|330aa|down_8|CP025069.1_1145885_1146875_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|154aa|down_9|CP025069.1_1146973_1147435_+	COG1522, Lrp, Transcriptional regulators [Transcription]
GCA_004008095.1_ASM400809v1	CP025069	Bordetella bronchiseptica strain I124 chromosome, complete genome	3	1332139-1332225	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TCGGTGCCTGTCCCCGCGGGGACAGGCACC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|144aa|up_7|CP025069.1_1325529_1325961_-,NA|292aa|up_4|CP025069.1_1328338_1329214_-,NA	NA|1147aa|up_9|CP025069.1_1321178_1324619_+	pfam05359, DUF748, Domain of Unknown Function (DUF748)	NA|302aa|up_8|CP025069.1_1324615_1325521_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|144aa|up_7|CP025069.1_1325529_1325961_-	NA	NA|168aa|up_6|CP025069.1_1326197_1326701_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|489aa|up_5|CP025069.1_1326712_1328179_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|292aa|up_4|CP025069.1_1328338_1329214_-	NA	NA|336aa|up_3|CP025069.1_1329210_1330218_-	TIGR00433, biotin_synthase, biotin synthase	NA|102aa|up_2|CP025069.1_1330686_1330992_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|102aa|up_1|CP025069.1_1331055_1331361_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|197aa|up_0|CP025069.1_1331484_1332075_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|298aa|down_0|CP025069.1_1332980_1333874_-	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|895aa|down_1|CP025069.1_1334074_1336759_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|458aa|down_2|CP025069.1_1336783_1338157_+	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids	NA|240aa|down_3|CP025069.1_1338189_1338909_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|334aa|down_4|CP025069.1_1338919_1339921_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|340aa|down_5|CP025069.1_1340058_1341078_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|462aa|down_6|CP025069.1_1341096_1342482_+	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|459aa|down_7|CP025069.1_1342478_1343855_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|332aa|down_8|CP025069.1_1343923_1344919_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|462aa|down_9|CP025069.1_1344951_1346337_-	pfam03972, MmgE_PrpD, MmgE/PrpD family
GCA_004008095.1_ASM400809v1	CP025069	Bordetella bronchiseptica strain I124 chromosome, complete genome	7	4565818-4565901	7	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|429aa|up_9|CP025069.1_4557830_4559117_-	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|251aa|up_8|CP025069.1_4559127_4559880_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|CP025069.1_4560051_4560924_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|CP025069.1_4560920_4561871_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|CP025069.1_4561867_4562440_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|CP025069.1_4562436_4563375_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|176aa|up_3|CP025069.1_4563441_4563969_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|201aa|up_2|CP025069.1_4563968_4564571_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|CP025069.1_4564567_4565311_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|CP025069.1_4565307_4565799_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|CP025069.1_4565955_4566744_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|CP025069.1_4567004_4567907_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|CP025069.1_4567906_4568653_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|CP025069.1_4568702_4569278_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|CP025069.1_4569490_4570984_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|CP025069.1_4570994_4572050_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|CP025069.1_4572071_4573208_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|CP025069.1_4573204_4575157_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|CP025069.1_4575170_4575734_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|CP025069.1_4575720_4576605_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
