The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	0	123122	4106395	transposase,tRNA,protease	Planktothrix_phage(16.67%)	111	NA	NA
AZX09435.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX09436.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX09437.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX09438.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX09439.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX09440.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX09441.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX09442.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX09443.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX09444.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX09445.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX09446.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX09447.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX09448.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX12826.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX09449.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09450.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX09451.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX09452.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09453.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX09454.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09455.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX09456.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX12827.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09457.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX09458.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX09459.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09460.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX09461.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX09462.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX09463.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX09464.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX09465.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX09466.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX09467.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX09468.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX09469.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09470.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09471.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX09472.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09473.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX09474.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX09475.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09476.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX09477.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX09478.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX09479.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09480.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09481.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09482.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09483.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX09484.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX09485.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09486.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09487.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX09488.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX09489.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX09490.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX09491.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09492.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09493.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX09494.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX09495.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX09496.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX09497.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12828.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09498.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX09499.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12829.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09500.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX09501.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX09502.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX09503.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX09504.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX09505.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX09506.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX09507.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX09508.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX09509.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX09510.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX09511.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX09512.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09513.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX09514.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX09515.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX09516.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX09517.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09518.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX09519.1|100624_101575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09520.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX09521.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX09522.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX09523.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX09524.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX09525.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX09526.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX09527.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX09528.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09529.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX09530.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX09531.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX09532.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX12830.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX09533.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12831.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX09534.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX09535.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX09536.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09537.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX09538.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX09539.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	165943	226454	4106395	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX09571.1|165943_166894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09572.1|168337_169240_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09573.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
AZX09574.1|170177_171560_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX09575.1|171593_172223_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX09576.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX09577.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12836.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
AZX09578.1|175351_176302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09579.1|177417_177945_+	lipoprotein	NA	NA	NA	NA	NA
AZX09580.1|178036_178852_+	lipoprotein	NA	NA	NA	NA	NA
AZX09581.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX09582.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX09583.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09584.1|182383_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX09585.1|183475_185380_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX09586.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX09587.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX09588.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
AZX09589.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX12837.1|190580_191027_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX09590.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09591.1|191805_194076_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX09592.1|194124_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX09593.1|195455_196406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09594.1|196451_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX09595.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX09596.1|198428_199529_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX09597.1|199610_199985_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX09598.1|200044_202909_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX09599.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09600.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
AZX09601.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09602.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09603.1|207792_208116_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX09604.1|208220_209270_-	cyclase	NA	NA	NA	NA	NA
AZX09605.1|209266_210091_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX09606.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
AZX09607.1|210413_210689_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX09608.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX09609.1|211389_212076_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX12838.1|212205_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09610.1|213107_213833_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX09611.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX09612.1|215325_216258_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX09613.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX09614.1|220104_223047_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX09615.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX09616.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX09617.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX09618.1|225503_226454_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	234386	287974	4106395	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
AZX09626.1|234386_235337_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09627.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09628.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09629.1|237419_238217_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX09630.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX09631.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09632.1|241385_242429_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09633.1|242599_244702_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09634.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09635.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX09636.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX09637.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX09638.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX09639.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX09640.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX09641.1|252673_254563_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX09642.1|254649_255288_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12839.1|255430_256675_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX09643.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX09644.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX09645.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
AZX09646.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX09647.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09648.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX09649.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
AZX09650.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09651.1|266623_267574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09652.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09653.1|268762_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX09654.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX09655.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX09656.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX09657.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX09658.1|275150_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX09659.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX09660.1|278190_279141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09661.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09662.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX09663.1|279587_279728_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09664.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX09665.1|280705_281317_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX09666.1|281475_282330_-	cytochrome c1	NA	NA	NA	NA	NA
AZX09667.1|282349_283732_-	cytochrome b	NA	NA	NA	NA	NA
AZX09668.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX09669.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX09670.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX12840.1|285890_287027_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX09671.1|287023_287974_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	556359	615660	4106395	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX09893.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09894.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX09895.1|559444_561217_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX09896.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX09897.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX09898.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX09899.1|563697_564648_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09900.1|564660_565596_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX09901.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX09902.1|566491_567661_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX09903.1|567657_568947_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09904.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX09905.1|569469_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX09906.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX09907.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX09908.1|572758_573322_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX09909.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX09910.1|574368_575157_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX09911.1|575332_576322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09912.1|578079_579030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09913.1|580252_581155_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09914.1|581156_582011_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX09915.1|582057_583167_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX09916.1|583177_583696_-	flavin reductase	NA	NA	NA	NA	NA
AZX09917.1|583725_584358_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX09918.1|584429_585089_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX09919.1|585085_586306_-	MFS transporter	NA	NA	NA	NA	NA
AZX09920.1|586574_587447_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX09921.1|587602_588340_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09922.1|588342_589938_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX12861.1|590069_591059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09923.1|591055_591766_+	oxidoreductase	NA	NA	NA	NA	NA
AZX12862.1|591861_592878_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX09924.1|593149_593776_-	aminotransferase	NA	NA	NA	NA	NA
AZX09925.1|593831_594959_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX09926.1|594964_600682_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX09927.1|600965_601181_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09928.1|601249_602194_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX09929.1|602382_603318_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX09930.1|603435_605007_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09931.1|605086_606295_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX09932.1|606792_607710_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX09933.1|610070_610292_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12863.1|610622_611639_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX09934.1|611723_611975_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX09935.1|611978_612794_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX09936.1|612906_613785_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX09937.1|613896_615660_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	621815	675556	4106395	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZX09941.1|621815_622766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09942.1|622834_623833_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09943.1|623837_624518_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX09944.1|624655_625048_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX12864.1|625155_626172_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX09945.1|626411_627197_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX09946.1|627291_628701_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX09947.1|628711_629512_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX09948.1|629532_630303_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX09949.1|630345_630813_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX09950.1|630809_631760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09951.1|633708_634587_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX09952.1|635513_638492_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09953.1|638490_638859_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09954.1|638845_639796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09955.1|639792_640881_-	hypothetical protein	NA	NA	NA	NA	NA
AZX09956.1|640916_641780_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX09957.1|642919_643309_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX09958.1|643312_644095_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX09959.1|644128_644881_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX09960.1|645189_646329_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX09961.1|646325_647117_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX09962.1|647113_647863_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX09963.1|647859_648732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09964.1|648731_649733_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX09965.1|649729_650893_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX09966.1|650918_651602_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09967.1|651555_652890_+	CoA ligase	NA	NA	NA	NA	NA
AZX09968.1|652882_653977_+	CoA transferase	NA	NA	NA	NA	NA
AZX12865.1|654743_655694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX09969.1|657634_658894_+	hypothetical protein	NA	NA	NA	NA	NA
AZX09970.1|658890_660429_+	SpoVR family protein	NA	NA	NA	NA	NA
AZX09971.1|660425_661622_-	MFS transporter	NA	NA	NA	NA	NA
AZX09972.1|661618_663010_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX09973.1|663006_664023_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX09974.1|664091_665327_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX09975.1|665427_666222_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX09976.1|666591_666999_+	GFA family protein	NA	NA	NA	NA	NA
AZX09977.1|667416_667689_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX09978.1|668270_669125_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX09979.1|669225_669528_+	urease subunit gamma	NA	NA	NA	NA	NA
AZX09980.1|669554_670190_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX09981.1|670206_670515_+	urease subunit beta	NA	NA	NA	NA	NA
AZX09982.1|670511_672227_+	urease subunit alpha	NA	NA	NA	NA	NA
AZX09983.1|672229_672847_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX09984.1|672947_673532_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX09985.1|673556_674201_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX09986.1|674605_675556_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	724443	764444	4106395	transposase,integrase,tRNA,protease	Pseudomonas_phage(33.33%)	32	721742:721760	741630:741648
721742:721760	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX10023.1|724443_725091_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX10024.1|725087_725870_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX10025.1|725942_727034_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX10026.1|727313_728441_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX10027.1|728782_729829_+	Fic family protein	NA	NA	NA	NA	NA
AZX12868.1|729839_729980_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX10028.1|729976_733096_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX10029.1|733097_736049_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX10030.1|736064_737276_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX10031.1|737272_737473_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10032.1|737459_738410_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10033.1|738426_738921_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX10034.1|738924_739182_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10035.1|739206_740637_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX10036.1|740718_741003_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZX10037.1|741786_742737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741630:741648	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX10038.1|743155_745720_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX10039.1|745764_747618_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10040.1|747950_749522_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX10041.1|750963_751914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10042.1|751999_752740_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10043.1|752966_753914_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10044.1|755301_756252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10045.1|756238_756427_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10046.1|756445_757261_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10047.1|757393_758833_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10048.1|758846_759188_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX10049.1|759242_760898_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX10050.1|761049_762060_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10051.1|762192_762966_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10052.1|763309_763507_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10053.1|763493_764444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	774371	821989	4106395	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZX10061.1|774371_775322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10062.1|775460_776213_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX10063.1|776451_778176_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX10064.1|778195_779455_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX10065.1|779469_780564_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX10066.1|780560_782687_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX10067.1|782699_783380_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX12872.1|783657_785031_+	MFS transporter	NA	NA	NA	NA	NA
AZX10068.1|785032_786052_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX10069.1|786115_787087_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10070.1|787151_788102_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10071.1|788200_789043_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX10072.1|789042_789378_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX10073.1|789448_790867_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX10074.1|791146_792187_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX10075.1|792266_792518_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX10076.1|792628_793927_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX10077.1|794075_794930_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX10078.1|794926_795817_+	acyltransferase	NA	NA	NA	NA	NA
AZX10079.1|795859_796771_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX10080.1|796797_797490_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX10081.1|797504_798485_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX10082.1|798497_800639_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX10083.1|800687_801656_-	nickel transporter	NA	NA	NA	NA	NA
AZX12873.1|801646_802270_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX10084.1|802275_803211_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10085.1|803207_804104_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX10086.1|804100_804823_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX10087.1|804813_805014_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10088.1|805151_805655_+	transcriptional repressor	NA	NA	NA	NA	NA
AZX10089.1|805931_807047_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX10090.1|807189_807654_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX10091.1|807801_808341_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX10092.1|808362_809697_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX12874.1|809710_810016_-	RND transporter	NA	NA	NA	NA	NA
AZX10093.1|810440_811022_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX10094.1|811103_812054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10095.1|812152_813103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10096.1|813543_814449_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10097.1|814504_816112_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX10098.1|816365_817871_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX10099.1|817885_818350_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX10100.1|818639_819590_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10101.1|819752_820283_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10102.1|820282_820594_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZX10103.1|821038_821989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1006205	1100242	4106395	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX10243.1|1006205_1007156_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10244.1|1007258_1007921_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10245.1|1008023_1008434_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10246.1|1008538_1009540_+	amidase	NA	NA	NA	NA	NA
AZX10247.1|1009542_1010739_+	CoA transferase	NA	NA	NA	NA	NA
AZX10248.1|1010759_1011563_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX10249.1|1011643_1011940_+	histidine kinase	NA	NA	NA	NA	NA
AZX10250.1|1011970_1012534_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX12888.1|1012574_1013432_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX10251.1|1013439_1014189_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX10252.1|1014210_1015083_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10253.1|1015111_1015891_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX10254.1|1015924_1016722_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10255.1|1018173_1019346_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX10256.1|1019376_1019769_+	RidA family protein	NA	NA	NA	NA	NA
AZX10257.1|1019762_1020623_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX10258.1|1020626_1021589_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12889.1|1022365_1023055_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX10259.1|1023915_1024866_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10260.1|1025215_1026085_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10261.1|1026155_1026851_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX10262.1|1026840_1027350_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX10263.1|1027346_1028567_+	MFS transporter	NA	NA	NA	NA	NA
AZX10264.1|1028514_1029417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10265.1|1030303_1031590_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10266.1|1031628_1033002_+	amidase	NA	NA	NA	NA	NA
AZX10267.1|1033040_1033742_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX10268.1|1034040_1035030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10269.1|1035130_1035592_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX10270.1|1035607_1036156_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX10271.1|1036297_1037773_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX10272.1|1037878_1038970_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX10273.1|1038973_1039756_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX10274.1|1039765_1040554_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX10275.1|1041679_1042114_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX10276.1|1042110_1043121_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX10277.1|1043164_1044091_-	VOC family protein	NA	NA	NA	NA	NA
AZX10278.1|1044377_1044746_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX12890.1|1044962_1045913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12891.1|1045894_1048384_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX10279.1|1048432_1049125_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX10280.1|1049197_1050397_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX10281.1|1050414_1051320_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10282.1|1051435_1052365_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX12892.1|1052390_1053737_+	MFS transporter	NA	NA	NA	NA	NA
AZX12893.1|1053764_1054514_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX10283.1|1054527_1055310_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX10284.1|1055502_1056453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10285.1|1056514_1057660_-	porin	NA	NA	NA	NA	NA
AZX10286.1|1058136_1058973_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX10287.1|1059042_1060008_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10288.1|1060004_1060955_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10289.1|1060941_1061136_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10290.1|1061340_1061883_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10291.1|1062918_1063869_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10292.1|1064110_1064479_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10293.1|1064524_1065649_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12894.1|1066783_1067524_-	oxidoreductase	NA	NA	NA	NA	NA
AZX10294.1|1067627_1068248_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10295.1|1068351_1069302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10296.1|1069298_1071407_-	AsmA family protein	NA	NA	NA	NA	NA
AZX10297.1|1071551_1072211_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX10298.1|1072242_1072707_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX10299.1|1072982_1073168_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10300.1|1073219_1073972_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX10301.1|1073978_1075241_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10302.1|1075282_1076521_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10303.1|1077598_1078726_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX10304.1|1078736_1079564_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX10305.1|1079550_1080417_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX10306.1|1081783_1082188_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10307.1|1082279_1083230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12895.1|1083599_1084511_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10308.1|1084525_1085236_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10309.1|1085232_1086477_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX10310.1|1086478_1086913_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX10311.1|1086941_1087247_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX10312.1|1087140_1087359_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10313.1|1087345_1088296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10314.1|1088352_1089501_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX10315.1|1089581_1090532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10316.1|1091063_1091861_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10317.1|1091908_1092562_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX10318.1|1092518_1093607_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX10319.1|1093771_1095997_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX10320.1|1098274_1099171_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX10321.1|1099059_1099305_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10322.1|1099291_1100242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1130628	1201599	4106395	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX10352.1|1130628_1131579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10353.1|1131635_1132748_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX10354.1|1135131_1136082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10355.1|1136672_1137449_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX10356.1|1137566_1137830_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX10357.1|1137930_1138935_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX10358.1|1139135_1140737_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX10359.1|1140762_1141521_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX10360.1|1141612_1142269_-	adenylate kinase	NA	NA	NA	NA	NA
AZX10361.1|1142359_1143124_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX10362.1|1143133_1143322_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10363.1|1143377_1144421_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX10364.1|1144417_1144831_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX10365.1|1144827_1145448_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX10366.1|1145728_1146679_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10367.1|1146846_1148238_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX10368.1|1148310_1148889_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX10369.1|1149005_1150403_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX10370.1|1150518_1151724_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX10371.1|1151823_1152342_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX10372.1|1152436_1152682_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX10373.1|1152909_1153224_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX10374.1|1153313_1158503_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX12896.1|1158499_1160668_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX10375.1|1160687_1163039_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX10376.1|1163043_1164363_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX10377.1|1164381_1166055_+	MCE family protein	NA	NA	NA	NA	NA
AZX10378.1|1166059_1166728_+	lipoprotein	NA	NA	NA	NA	NA
AZX10379.1|1166884_1170706_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX10380.1|1171036_1171987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10381.1|1172008_1173154_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10382.1|1173302_1174232_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX10383.1|1174228_1175317_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX10384.1|1175313_1176117_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX10385.1|1176113_1176845_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX10386.1|1176902_1178192_-	MFS transporter	NA	NA	NA	NA	NA
AZX10387.1|1178288_1178891_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10388.1|1183444_1183783_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX10389.1|1184451_1184757_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10390.1|1186463_1187414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10391.1|1187410_1188742_-	MFS transporter	NA	NA	NA	NA	NA
AZX10392.1|1189981_1192003_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX10393.1|1191995_1192637_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX10394.1|1192633_1193041_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX10395.1|1193037_1193838_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX10396.1|1193912_1194617_+	oxidoreductase	NA	NA	NA	NA	NA
AZX10397.1|1194648_1195443_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX10398.1|1195439_1196390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10399.1|1196488_1197439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10400.1|1197537_1197972_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX10401.1|1198054_1200391_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX12897.1|1200582_1201599_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1301819	1359030	4106395	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX10479.1|1301819_1302770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10480.1|1306516_1307128_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX10481.1|1307350_1308811_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX10482.1|1308907_1310500_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX10483.1|1310486_1310765_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10484.1|1310823_1311111_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX10485.1|1311112_1312453_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX10486.1|1312548_1313238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10487.1|1313250_1314681_+	MFS transporter	NA	NA	NA	NA	NA
AZX10488.1|1316405_1317227_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10489.1|1317237_1318809_+	amidohydrolase	NA	NA	NA	NA	NA
AZX10490.1|1318837_1319815_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10491.1|1319841_1320645_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX10492.1|1320641_1321436_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX10493.1|1321443_1322679_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX10494.1|1322671_1323106_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX10495.1|1323855_1324806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10496.1|1325427_1327155_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX10497.1|1327266_1328625_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX10498.1|1328745_1328931_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10499.1|1328917_1329868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10500.1|1329908_1330979_+	FUSC family protein	NA	NA	NA	NA	NA
AZX12903.1|1331001_1331880_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX10501.1|1332051_1333023_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX10502.1|1333185_1334028_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10503.1|1334189_1334870_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX10504.1|1334863_1336033_+	amine oxidase	NA	NA	NA	NA	NA
AZX10505.1|1336029_1337061_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX10506.1|1337104_1338346_+	MFS transporter	NA	NA	NA	NA	NA
AZX10507.1|1338380_1339913_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX10508.1|1339993_1340617_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX10509.1|1340647_1341259_+	LysE family translocator	NA	NA	NA	NA	NA
AZX10510.1|1341294_1341765_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX10511.1|1342196_1343201_+	peptidase M20	NA	NA	NA	NA	NA
AZX10512.1|1343237_1344752_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX10513.1|1344755_1345715_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX10514.1|1345743_1346547_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX10515.1|1346548_1348183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX10516.1|1348266_1349328_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX10517.1|1349526_1349796_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10518.1|1349799_1350324_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX10519.1|1350739_1351690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10520.1|1351686_1352757_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX10521.1|1352829_1353468_+	DedA family protein	NA	NA	NA	NA	NA
AZX10522.1|1353762_1353990_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX10523.1|1354112_1354826_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX10524.1|1355070_1356021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10525.1|1356124_1356406_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10526.1|1356520_1357969_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX10527.1|1358079_1359030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1449263	1501416	4106395	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZX10609.1|1449263_1450214_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10610.1|1450380_1450734_+	cytochrome C	NA	NA	NA	NA	NA
AZX10611.1|1450746_1451109_+	cytochrome	NA	NA	NA	NA	NA
AZX10612.1|1451150_1451576_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX10613.1|1451778_1453035_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX10614.1|1453233_1454214_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10615.1|1454363_1455605_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10616.1|1455703_1456654_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10617.1|1456662_1457358_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX10618.1|1460179_1460779_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX10619.1|1460789_1462955_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX10620.1|1462978_1464763_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX10621.1|1464762_1464852_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX10622.1|1465546_1465819_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX10623.1|1465818_1467885_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX10624.1|1467881_1468832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10625.1|1468930_1469881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10626.1|1469996_1470329_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX10627.1|1470325_1471012_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX10628.1|1470998_1471958_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX12911.1|1471999_1474360_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX10629.1|1474359_1474992_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX10630.1|1475054_1476434_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX10631.1|1476480_1477836_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX10632.1|1478114_1478363_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10633.1|1478550_1478868_-	virulence factor	NA	NA	NA	NA	NA
AZX10634.1|1479140_1479656_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX10635.1|1479749_1479911_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10636.1|1479926_1480682_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX10637.1|1481020_1481227_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10638.1|1481234_1481894_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX10639.1|1482188_1484393_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX10640.1|1484503_1485727_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX10641.1|1485849_1486824_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX10642.1|1486891_1488085_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX10643.1|1488099_1488900_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX10644.1|1488896_1490753_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX10645.1|1490749_1491355_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX10646.1|1491373_1492759_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX10647.1|1493484_1494711_+	transporter	NA	NA	NA	NA	NA
AZX10648.1|1494799_1495582_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX10649.1|1495680_1496631_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10650.1|1496657_1497431_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX10651.1|1497442_1498684_+	MFS transporter	NA	NA	NA	NA	NA
AZX10652.1|1500465_1501416_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1545341	1604201	4106395	transposase,tRNA,protease	Streptococcus_virus(11.11%)	53	NA	NA
AZX12912.1|1545341_1545830_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX10700.1|1545947_1546526_+|protease	protease	protease	NA	NA	NA	NA
AZX10701.1|1546598_1547000_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX10702.1|1547098_1548049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10703.1|1548055_1549168_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX10704.1|1549854_1551057_+	MFS transporter	NA	NA	NA	NA	NA
AZX10705.1|1551260_1553921_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10706.1|1553933_1557338_+	nuclease	NA	NA	NA	NA	NA
AZX10707.1|1558005_1560228_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX10708.1|1560274_1560601_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX10709.1|1560651_1561260_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX10710.1|1561358_1562309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10711.1|1562378_1563143_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX10712.1|1563139_1563739_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12913.1|1563842_1564688_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX10713.1|1564753_1565380_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX10714.1|1565376_1566327_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10715.1|1566313_1566502_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10716.1|1566425_1567547_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX10717.1|1567527_1568529_-	aminopeptidase	NA	NA	NA	NA	NA
AZX10718.1|1568634_1570146_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX10719.1|1570142_1571447_-	peptidase	NA	NA	NA	NA	NA
AZX10720.1|1571558_1572119_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX10721.1|1572386_1572941_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX10722.1|1573396_1573612_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX12914.1|1573866_1576464_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX10723.1|1576460_1577648_+	cupin	NA	NA	NA	NA	NA
AZX10724.1|1578306_1578921_+	fimbrial protein	NA	NA	NA	NA	NA
AZX10725.1|1579009_1580137_-	lipoprotein	NA	NA	NA	NA	NA
AZX10726.1|1580148_1581054_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX10727.1|1581946_1582897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10728.1|1583078_1583831_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX10729.1|1583899_1584559_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX10730.1|1584555_1585284_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX10731.1|1585296_1587576_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX10732.1|1587600_1587804_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX10733.1|1587845_1588493_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX10734.1|1588613_1589531_-	cytochrome C	NA	NA	NA	NA	NA
AZX10735.1|1589527_1590241_-	cytochrome C	NA	NA	NA	NA	NA
AZX10736.1|1590478_1591249_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10737.1|1591253_1591853_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX10738.1|1592097_1593588_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX10739.1|1593646_1593931_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX10740.1|1593927_1594056_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10741.1|1594068_1594224_-	hypothetical protein	NA	NA	NA	NA	NA
AZX10742.1|1594496_1595423_-	YicC family protein	NA	NA	NA	NA	NA
AZX10743.1|1595559_1596300_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX10744.1|1596466_1597843_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX10745.1|1598024_1598930_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX10746.1|1598964_1600704_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX10747.1|1600581_1602384_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX10748.1|1602501_1603152_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX10749.1|1603250_1604201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1649373	1704964	4106395	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX10780.1|1649373_1650324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10781.1|1650382_1651156_+	oxidoreductase	NA	NA	NA	NA	NA
AZX10782.1|1651148_1652705_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX10783.1|1652701_1653652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10784.1|1654978_1655581_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10785.1|1655820_1656522_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX10786.1|1656515_1657298_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX10787.1|1657482_1658433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10788.1|1658531_1659269_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX10789.1|1659458_1660217_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10790.1|1660263_1661253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10791.1|1661430_1662399_-	transporter	NA	NA	NA	NA	NA
AZX10792.1|1663938_1664907_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX10793.1|1664915_1665857_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX10794.1|1666330_1667341_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12918.1|1667331_1668846_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX10795.1|1668842_1670189_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12919.1|1670191_1671226_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX10796.1|1671275_1672901_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX10797.1|1673453_1674404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10798.1|1674508_1675456_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12920.1|1675509_1677324_-	histidine kinase	NA	NA	NA	NA	NA
AZX10799.1|1677316_1677991_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX10800.1|1678120_1681195_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX10801.1|1681208_1681508_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX12921.1|1681822_1682446_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX10802.1|1682689_1683559_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX10803.1|1683536_1684481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12922.1|1684566_1685538_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX12923.1|1685605_1686379_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10804.1|1686375_1687572_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX10805.1|1687602_1688553_-	hydrolase	NA	NA	NA	NA	NA
AZX10806.1|1688774_1689464_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX10807.1|1689528_1690284_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10808.1|1690335_1691328_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10809.1|1691337_1692291_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12924.1|1692406_1693369_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10810.1|1694770_1695199_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10811.1|1695195_1696146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12925.1|1696439_1697162_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX10812.1|1697600_1698788_-	MFS transporter	NA	NA	NA	NA	NA
AZX10813.1|1698791_1699172_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10814.1|1700891_1701863_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX10815.1|1701876_1702590_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX10816.1|1702594_1703512_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX10817.1|1703618_1703915_+	hypothetical protein	NA	NA	NA	NA	NA
AZX10818.1|1704013_1704964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	1938777	2008429	4106395	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AZX10994.1|1938777_1941435_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZX10995.1|1941512_1942715_-	MFS transporter	NA	NA	NA	NA	NA
AZX10996.1|1942711_1943224_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12934.1|1943346_1943685_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX10997.1|1944060_1945011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10998.1|1945109_1946060_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX10999.1|1946223_1948119_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZX11000.1|1948232_1948400_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZX11001.1|1948463_1948700_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZX11002.1|1949068_1950268_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZX11003.1|1951783_1952734_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11004.1|1953185_1954187_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11005.1|1954359_1955217_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX11006.1|1955213_1956476_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZX11007.1|1956576_1956951_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX11008.1|1956999_1958211_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX11009.1|1958295_1959066_+	spermidine synthase	NA	NA	NA	NA	NA
AZX11010.1|1959179_1959944_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12935.1|1960059_1961196_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZX11011.1|1961192_1961999_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX11012.1|1963743_1964715_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11013.1|1964871_1965384_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZX11014.1|1965542_1966517_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11015.1|1967517_1968312_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZX12936.1|1968337_1969144_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZX11016.1|1969254_1969845_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX11017.1|1969855_1971034_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11018.1|1971136_1971511_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX11019.1|1971763_1973095_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX11020.1|1973161_1976392_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX11021.1|1977882_1978629_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZX11022.1|1978713_1979175_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZX11023.1|1979212_1980271_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZX11024.1|1980233_1982063_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZX11025.1|1982102_1982675_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX11026.1|1984099_1985011_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZX11027.1|1985239_1986562_+	isocitrate lyase	NA	NA	NA	NA	NA
AZX11028.1|1986607_1986991_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11029.1|1986921_1987557_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11030.1|1987516_1988467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11031.1|1989337_1990210_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX11032.1|1990287_1991427_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11033.1|1991776_1993042_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZX11034.1|1993047_1993575_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZX11035.1|1993579_1994398_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX11036.1|1994397_1995120_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX11037.1|1995141_1995456_+	ferredoxin	NA	NA	NA	NA	NA
AZX11038.1|1995452_1996622_+	CoA transferase	NA	NA	NA	NA	NA
AZX11039.1|1996652_1997528_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX11040.1|1997524_1998844_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZX11041.1|1998916_2000113_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZX11042.1|2000123_2001611_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11043.1|2004205_2005105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11044.1|2005242_2006208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11045.1|2006306_2007257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11046.1|2007300_2007492_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11047.1|2007478_2008429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2019925	2069321	4106395	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZX11059.1|2019925_2020876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11060.1|2022013_2022310_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11061.1|2022484_2023837_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX12938.1|2023979_2024996_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX12939.1|2026975_2027989_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX11062.1|2028075_2028981_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11063.1|2029137_2029482_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11064.1|2029639_2030098_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX11065.1|2030111_2032328_+	aldehyde oxidase	NA	NA	NA	NA	NA
AZX11066.1|2032324_2033386_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11067.1|2033414_2034389_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX11068.1|2034340_2035159_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX11069.1|2035171_2035780_-	peptidase S16	NA	NA	NA	NA	NA
AZX11070.1|2035954_2036350_+	VOC family protein	NA	NA	NA	NA	NA
AZX11071.1|2036368_2037808_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX11072.1|2037836_2038184_+	GFA family protein	NA	NA	NA	NA	NA
AZX11073.1|2038202_2039153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11074.1|2039805_2040756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11075.1|2040839_2042657_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX11076.1|2042730_2043378_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11077.1|2043390_2044320_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX11078.1|2044489_2044954_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11079.1|2045201_2045882_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11080.1|2045930_2047622_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX11081.1|2047637_2048189_-	ATPase	NA	NA	NA	NA	NA
AZX11082.1|2048185_2048557_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX11083.1|2048669_2049506_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX11084.1|2049516_2050041_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX11085.1|2050138_2050318_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX11086.1|2050447_2051479_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX11087.1|2051552_2051909_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX12940.1|2051898_2052774_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX11088.1|2052872_2053757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11089.1|2053778_2055074_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX11090.1|2056022_2056673_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZX12941.1|2056760_2058281_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX11091.1|2058538_2060404_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX11092.1|2061449_2062400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11093.1|2063372_2063732_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZX11094.1|2063719_2065156_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZX11095.1|2065152_2065806_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX11096.1|2065802_2067002_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZX11097.1|2067099_2068374_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZX11098.1|2068370_2069321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2080525	2121216	4106395	transposase,tRNA,protease	Klosneuvirus(25.0%)	36	NA	NA
AZX11112.1|2080525_2081476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11113.1|2081574_2082525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11114.1|2082484_2082898_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX11115.1|2083182_2083482_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12943.1|2083891_2086060_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX11116.1|2086859_2088890_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX11117.1|2088909_2089122_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX11118.1|2089399_2089939_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX11119.1|2090052_2091360_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX11120.1|2091424_2092582_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX11121.1|2092765_2093665_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX11122.1|2093683_2094988_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX11123.1|2094953_2096060_-	GTPase HflX	NA	NA	NA	NA	NA
AZX11124.1|2096147_2096384_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX11125.1|2096522_2097593_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX11126.1|2097596_2098952_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX11127.1|2098978_2100139_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX11128.1|2100141_2100780_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11129.1|2100781_2102086_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX11130.1|2102126_2103422_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX11131.1|2103428_2103935_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX11132.1|2103931_2105080_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX11133.1|2105107_2105533_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX11134.1|2105855_2108738_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX11135.1|2108830_2109586_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX11136.1|2110351_2111701_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX11137.1|2111799_2112750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11138.1|2112848_2113799_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11139.1|2113872_2114346_+	RidA family protein	NA	NA	NA	NA	NA
AZX11140.1|2114371_2115580_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX11141.1|2115576_2116350_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX11142.1|2116349_2116973_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX11143.1|2117138_2117399_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX11144.1|2117702_2118284_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11145.1|2118350_2118605_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX11146.1|2118591_2121216_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2148999	2210204	4106395	transposase,tRNA,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX11166.1|2148999_2149950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11167.1|2150150_2150960_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX11168.1|2151084_2152035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11169.1|2152031_2152925_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX11170.1|2153049_2153244_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX11171.1|2153243_2153585_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX11172.1|2153594_2155457_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX11173.1|2155586_2156099_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX11174.1|2156101_2156425_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX11175.1|2156426_2156837_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX11176.1|2156874_2158086_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX11177.1|2158103_2158616_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX11178.1|2158831_2159323_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX11179.1|2159575_2161612_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX11180.1|2161689_2162892_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX11181.1|2162942_2163671_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX11182.1|2165228_2166179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11183.1|2166749_2166962_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11184.1|2166979_2167711_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11185.1|2167745_2168387_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX11186.1|2168379_2169096_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX11187.1|2171260_2172037_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX11188.1|2172058_2173216_-	thiolase	NA	NA	NA	NA	NA
AZX11189.1|2173212_2173644_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11190.1|2173640_2174444_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX11191.1|2174457_2174913_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX11192.1|2174925_2175897_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11193.1|2175962_2177186_-	CoA transferase	NA	NA	NA	NA	NA
AZX11194.1|2177413_2178364_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11195.1|2178487_2180941_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX11196.1|2181129_2182434_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX11197.1|2182538_2183192_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX11198.1|2183194_2184505_-	trigger factor	NA	NA	NA	NA	NA
AZX11199.1|2184683_2185262_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX11200.1|2185373_2185574_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX11201.1|2185919_2186486_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX11202.1|2186569_2186773_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX11203.1|2187079_2187400_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11204.1|2187441_2187723_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11205.1|2187797_2189054_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX11206.1|2189436_2189766_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX11207.1|2191336_2192158_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX11208.1|2192157_2193297_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX11209.1|2193303_2194200_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX11210.1|2194196_2196122_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX11211.1|2196481_2199094_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX11212.1|2199146_2201447_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX11213.1|2201443_2202652_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX11214.1|2202913_2203288_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11215.1|2203284_2204235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11216.1|2204333_2206328_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX11217.1|2206387_2207353_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX11218.1|2207342_2210204_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 19
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2213597	2261612	4106395	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	44	NA	NA
AZX11223.1|2213597_2214548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11224.1|2214534_2214714_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11225.1|2214658_2215099_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX11226.1|2215227_2216457_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX11227.1|2216495_2217317_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX11228.1|2217370_2218522_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX11229.1|2218613_2219102_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX11230.1|2221628_2224202_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX11231.1|2224272_2226846_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX11232.1|2227111_2227312_+	CsbD family protein	NA	NA	NA	NA	NA
AZX11233.1|2227343_2227505_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX11234.1|2227562_2227901_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX11235.1|2228049_2229000_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11236.1|2229098_2230049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11237.1|2230147_2230867_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX12945.1|2230943_2231492_+	arylesterase	NA	NA	NA	NA	NA
AZX11238.1|2231473_2233489_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX11239.1|2233671_2234421_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX11240.1|2234433_2235297_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX11241.1|2235300_2236716_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX11242.1|2236849_2237578_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX11243.1|2237716_2237917_-	copper chaperone	NA	NA	NA	NA	NA
AZX11244.1|2238092_2238491_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX11245.1|2238514_2239915_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX12946.1|2240033_2240786_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11246.1|2241074_2241752_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11247.1|2241778_2242558_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX11248.1|2242554_2243439_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX12947.1|2243456_2244146_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX11249.1|2244220_2244979_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX11250.1|2245104_2245752_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX12948.1|2246019_2247036_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX11251.1|2247133_2248174_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX11252.1|2248308_2249601_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX11253.1|2250960_2251344_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX11254.1|2251361_2251949_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX11255.1|2251986_2252937_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11256.1|2253035_2253596_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX11257.1|2253592_2254138_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11258.1|2254333_2255362_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11259.1|2255402_2256743_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX11260.1|2256851_2257856_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11261.1|2257962_2260563_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX11262.1|2260661_2261612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2508195	2566439	4106395	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZX11468.1|2508195_2509146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11469.1|2509625_2510282_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX11470.1|2510296_2511964_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX11471.1|2511966_2512596_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11472.1|2512807_2513902_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11473.1|2514046_2514859_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX11474.1|2514862_2516566_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX11475.1|2516616_2517747_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX11476.1|2517933_2519010_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX12960.1|2519091_2519742_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX11477.1|2519756_2521190_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX11478.1|2521443_2522262_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11479.1|2522258_2522963_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX11480.1|2523862_2524978_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11481.1|2525011_2525386_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11482.1|2525408_2526566_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX11483.1|2526578_2526812_-	lipoprotein	NA	NA	NA	NA	NA
AZX11484.1|2527446_2530416_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX11485.1|2530430_2530640_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX11486.1|2530791_2531421_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11487.1|2531417_2533535_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX11488.1|2533531_2534212_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX11489.1|2534208_2534769_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX11490.1|2534775_2535873_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX11491.1|2536010_2536619_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX11492.1|2536615_2537908_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX11493.1|2537921_2538464_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX11494.1|2538473_2539310_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX11495.1|2539343_2540405_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX11496.1|2540446_2541499_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX11497.1|2541514_2541817_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11498.1|2541958_2542909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11499.1|2543087_2544782_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX11500.1|2544778_2545864_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX11501.1|2545911_2546811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11502.1|2546821_2547466_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX11503.1|2548487_2551730_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX11504.1|2551740_2552838_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX11505.1|2553100_2554084_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX11506.1|2554182_2555133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11507.1|2555231_2556182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11508.1|2556191_2556881_-	VIT family protein	NA	NA	NA	NA	NA
AZX11509.1|2556940_2557378_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX11510.1|2557423_2558317_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX11511.1|2558364_2559537_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX11512.1|2559533_2560688_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX11513.1|2560884_2561235_-	RnfH family protein	NA	NA	NA	NA	NA
AZX11514.1|2561224_2561659_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX11515.1|2561675_2562626_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11516.1|2562773_2563241_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX11517.1|2563221_2564379_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX11518.1|2564444_2565371_-	paraslipin	NA	NA	NA	NA	NA
AZX11519.1|2565488_2566439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2608719	2675219	4106395	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX11558.1|2608719_2609670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11559.1|2610039_2610612_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX11560.1|2610614_2611625_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX11561.1|2611617_2612118_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX11562.1|2612128_2612470_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX11563.1|2612481_2613273_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX11564.1|2613289_2613559_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX11565.1|2613581_2614370_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX12964.1|2614416_2615433_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX11566.1|2615649_2617092_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX11567.1|2617270_2618890_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX11568.1|2619010_2620831_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX11569.1|2620909_2622442_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX11570.1|2622475_2624122_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX11571.1|2624191_2625214_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX11572.1|2625231_2626365_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX11573.1|2626367_2627057_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX11574.1|2627056_2627842_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX11575.1|2627885_2628650_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX11576.1|2628688_2630110_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX11577.1|2630175_2630880_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX11578.1|2630927_2631347_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX11579.1|2631359_2631767_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX12965.1|2631950_2632661_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX11580.1|2632787_2633078_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX11581.1|2633095_2633578_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX11582.1|2638083_2639238_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX12966.1|2639543_2640560_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX11583.1|2640806_2641595_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11584.1|2641661_2642342_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX11585.1|2642338_2643109_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX11586.1|2643207_2644158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11587.1|2644213_2645131_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX11588.1|2645141_2646320_-	mandelate racemase	NA	NA	NA	NA	NA
AZX11589.1|2646339_2647335_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11590.1|2648923_2649532_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX11591.1|2649519_2650560_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX11592.1|2650577_2651540_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11593.1|2651536_2652730_-	CoA transferase	NA	NA	NA	NA	NA
AZX11594.1|2652726_2653524_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX11595.1|2653549_2654536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11596.1|2654554_2656594_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX12967.1|2656795_2657476_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11597.1|2657489_2658401_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX11598.1|2658397_2658976_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX11599.1|2659114_2660020_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11600.1|2660027_2663447_+	nuclease	NA	NA	NA	NA	NA
AZX11601.1|2663434_2666035_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX11602.1|2666990_2667623_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11603.1|2668016_2668775_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11604.1|2668771_2669974_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX11605.1|2670161_2671112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11606.1|2672019_2673165_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX12968.1|2673184_2673907_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX11607.1|2674023_2674203_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11608.1|2674268_2675219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2879331	2960608	4106395	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZX11773.1|2879331_2880282_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11774.1|2880278_2881181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11775.1|2881268_2882027_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX11776.1|2882039_2883188_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX11777.1|2883228_2884656_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX11778.1|2884885_2886100_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX11779.1|2886145_2889016_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX11780.1|2891426_2891915_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX11781.1|2892040_2894737_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX11782.1|2894891_2897174_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX11783.1|2897338_2897971_+	fimbrial protein	NA	NA	NA	NA	NA
AZX11784.1|2898069_2899020_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX11785.1|2899066_2899621_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX11786.1|2899688_2900534_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX11787.1|2900603_2901572_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX11788.1|2901571_2903368_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11789.1|2905267_2909194_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX11790.1|2909484_2909661_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11791.1|2909929_2913160_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX11792.1|2913441_2914269_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX11793.1|2914302_2914998_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX11794.1|2914990_2916271_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX11795.1|2916280_2917258_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12983.1|2917239_2918940_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX11796.1|2919042_2920146_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX11797.1|2920176_2920932_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX11798.1|2920938_2922459_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX11799.1|2922501_2922804_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11800.1|2922800_2923433_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11801.1|2923511_2925377_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX11802.1|2925373_2926189_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX11803.1|2926196_2927312_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11804.1|2928216_2929095_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX11805.1|2929094_2929919_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX11806.1|2930086_2931037_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11807.1|2931219_2934099_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX11808.1|2934080_2934857_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX11809.1|2934949_2936413_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX11810.1|2936409_2936781_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX11811.1|2936798_2938112_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11812.1|2938148_2938607_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX11813.1|2938719_2939670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11814.1|2939666_2940680_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX11815.1|2940819_2941806_+	homoserine kinase	NA	NA	NA	NA	NA
AZX11816.1|2941849_2942650_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11817.1|2943452_2944403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11818.1|2944554_2945157_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11819.1|2945175_2945808_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX11820.1|2946045_2947932_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX11821.1|2947950_2948793_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX11822.1|2948789_2950148_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX11823.1|2950368_2951163_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX11824.1|2951393_2952887_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX11825.1|2953122_2955204_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX11826.1|2955398_2956439_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX11827.1|2956573_2957590_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX11828.1|2957611_2958469_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX12984.1|2958513_2959290_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX11829.1|2959657_2960608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	2969676	3018614	4106395	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX11837.1|2969676_2970090_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX11838.1|2970130_2970448_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX11839.1|2970532_2971249_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12985.1|2971512_2972934_+	siroheme synthase	NA	NA	NA	NA	NA
AZX11840.1|2973000_2975748_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX12986.1|2976080_2977097_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX12987.1|2977432_2978074_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX11841.1|2978164_2979601_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX11842.1|2979758_2980832_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX11843.1|2980828_2981965_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX11844.1|2982109_2982454_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX11845.1|2982520_2984401_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX11846.1|2984450_2985386_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX12988.1|2985718_2986735_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX11847.1|2987672_2989100_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX11848.1|2989096_2990119_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX11849.1|2990108_2990582_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX11850.1|2990707_2991610_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX11851.1|2991606_2993250_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX12989.1|2993246_2994254_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX12990.1|2995084_2996101_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX11852.1|2996200_2996833_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX11853.1|2996841_2997231_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX11854.1|2997283_2998336_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX11855.1|2999199_3000906_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX11856.1|3000979_3001480_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX11857.1|3001494_3003552_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX11858.1|3003578_3003872_-	response regulator	NA	NA	NA	NA	NA
AZX11859.1|3003973_3004921_-	motility protein MotB	NA	NA	NA	NA	NA
AZX11860.1|3004933_3005809_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX11861.1|3005929_3006490_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX11862.1|3006524_3006848_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX11863.1|3007283_3008021_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX11864.1|3008319_3009270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11865.1|3009513_3009777_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX11866.1|3009850_3010132_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11867.1|3010148_3011009_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX11868.1|3011005_3011341_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11869.1|3011394_3012045_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX11870.1|3013725_3014670_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11871.1|3014715_3015033_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11872.1|3015035_3015974_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX11873.1|3016151_3016637_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX11874.1|3016655_3017204_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX11875.1|3017480_3018614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	3030221	3102715	4106395	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX11884.1|3030221_3031172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11885.1|3031214_3032390_+	flagellin FliC	NA	NA	NA	NA	NA
AZX11886.1|3032611_3034402_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX11887.1|3034414_3036076_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX11888.1|3036088_3038794_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX11889.1|3039086_3040841_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX11890.1|3040837_3041464_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX11891.1|3041460_3042312_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX11892.1|3042387_3044502_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX11893.1|3044652_3045303_+	SCO family protein	NA	NA	NA	NA	NA
AZX11894.1|3045448_3045700_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX11895.1|3045769_3047152_-	multidrug transporter	NA	NA	NA	NA	NA
AZX11896.1|3047148_3050328_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX12992.1|3051135_3052053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11897.1|3052104_3052836_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX11898.1|3052895_3053468_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX12993.1|3054976_3055993_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX11899.1|3056130_3057180_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX11900.1|3057284_3058235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11901.1|3058330_3059056_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX11902.1|3059266_3059647_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX11903.1|3059952_3060825_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX11904.1|3060832_3061213_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11905.1|3061366_3062641_-	radical SAM protein	NA	NA	NA	NA	NA
AZX12994.1|3064128_3065037_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX11906.1|3065834_3066899_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX11907.1|3068735_3069770_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX11908.1|3069959_3070601_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX11909.1|3070683_3072510_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX11910.1|3072753_3073683_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX11911.1|3073682_3074432_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX11912.1|3074503_3075418_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX11913.1|3075437_3076583_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX11914.1|3076643_3077555_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX11915.1|3077635_3078586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11916.1|3078684_3079269_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX11917.1|3079303_3080293_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX11918.1|3080289_3081231_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX11919.1|3081227_3082448_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX11920.1|3082490_3082805_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX11921.1|3082996_3083356_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX11922.1|3083357_3085088_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX11923.1|3085260_3085932_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX11924.1|3085946_3087275_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX11925.1|3087271_3088171_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX11926.1|3088257_3089343_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX11927.1|3089335_3090469_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX11928.1|3090468_3093150_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX11929.1|3093520_3094102_+	OmpA family protein	NA	NA	NA	NA	NA
AZX11930.1|3094179_3094953_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX11931.1|3094949_3095627_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX11932.1|3095842_3097024_+	MFS transporter	NA	NA	NA	NA	NA
AZX11933.1|3097500_3097758_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11934.1|3097796_3097979_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX11935.1|3098008_3098959_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12995.1|3099088_3099481_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX11936.1|3099757_3100669_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX11937.1|3100793_3101768_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11938.1|3101764_3102715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	3116222	3169740	4106395	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZX11949.1|3116222_3117173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11950.1|3117285_3117537_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11951.1|3117730_3117946_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11952.1|3118042_3119161_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX11953.1|3119280_3119493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11954.1|3119652_3119874_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11955.1|3119926_3120877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11956.1|3122053_3123424_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX11957.1|3123456_3124248_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11958.1|3124260_3125316_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11959.1|3125341_3126217_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11960.1|3126322_3126571_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11961.1|3126605_3128060_-	carboxylase	NA	NA	NA	NA	NA
AZX11962.1|3128056_3128578_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX11963.1|3128606_3129959_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX11964.1|3130182_3133071_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX11965.1|3135215_3136517_+	phospholipase	NA	NA	NA	NA	NA
AZX11966.1|3136531_3137248_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX11967.1|3137529_3138210_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX11968.1|3138221_3138389_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11969.1|3138497_3138650_-	hypothetical protein	NA	NA	NA	NA	NA
AZX11970.1|3138737_3139397_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX11971.1|3139777_3141628_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX11972.1|3141624_3142575_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11973.1|3143738_3145454_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX11974.1|3145464_3145956_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX11975.1|3146028_3147045_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX11976.1|3147212_3147992_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX11977.1|3148010_3148538_-	lipoprotein	NA	NA	NA	NA	NA
AZX11978.1|3148536_3148743_+	hypothetical protein	NA	NA	NA	NA	NA
AZX11979.1|3148831_3149101_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX11980.1|3149191_3151351_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX11981.1|3151471_3152191_+	lipoprotein	NA	NA	NA	NA	NA
AZX11982.1|3152187_3153138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX11983.1|3153278_3154496_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX11984.1|3154489_3155101_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX11985.1|3155734_3156712_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX11986.1|3156855_3157602_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX11987.1|3157623_3158070_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX11988.1|3158857_3161089_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX11989.1|3161111_3161912_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX11990.1|3162193_3163426_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX11991.1|3163536_3164526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX11992.1|3164556_3165945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX11993.1|3167543_3168527_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX12997.1|3168723_3169740_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	3234198	3307360	4106395	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX12046.1|3234198_3235149_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12047.1|3235145_3236165_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX12048.1|3236174_3238883_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX12049.1|3239030_3239687_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX12050.1|3239785_3240736_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12051.1|3240841_3241777_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX12052.1|3241976_3243671_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX12053.1|3243705_3244632_+	VOC family protein	NA	NA	NA	NA	NA
AZX13001.1|3244700_3245798_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12054.1|3245816_3246680_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX12055.1|3246691_3247474_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX12056.1|3247470_3248589_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX12057.1|3248585_3250118_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX12058.1|3250158_3251166_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX12059.1|3251310_3252033_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12060.1|3252048_3253071_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX12061.1|3253387_3254122_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12062.1|3254206_3255952_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX12063.1|3255948_3256701_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX12064.1|3256745_3257702_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX12065.1|3257790_3258357_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12066.1|3258364_3259225_-	aminotransferase	NA	NA	NA	NA	NA
AZX12067.1|3259254_3259998_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX12068.1|3260014_3260698_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12069.1|3261535_3262450_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX12070.1|3262514_3263423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12071.1|3263513_3264938_-	protein CyaE	NA	NA	NA	NA	NA
AZX12072.1|3264939_3266262_-	protein CyaD	NA	NA	NA	NA	NA
AZX12073.1|3266258_3268397_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX12074.1|3268474_3273595_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX13002.1|3273781_3273961_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12075.1|3274043_3274631_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX12076.1|3274646_3276128_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX12077.1|3276182_3278036_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12078.1|3278298_3279636_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX12079.1|3279670_3281668_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX12080.1|3281685_3283734_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX12081.1|3283864_3284731_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12082.1|3284999_3285965_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX12083.1|3286079_3287228_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX12084.1|3287652_3287964_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX12085.1|3287997_3288258_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX12086.1|3288407_3289541_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX12087.1|3289611_3290748_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX12088.1|3290913_3291708_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX12089.1|3291770_3292214_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX12090.1|3292329_3293280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12091.1|3293266_3293455_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12092.1|3293402_3293810_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX12093.1|3293882_3296078_+	DNA methylase	NA	NA	NA	NA	NA
AZX12094.1|3296299_3297250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12095.1|3297209_3297734_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX12096.1|3297865_3298837_+	hypothetical protein	NA	NA	NA	NA	NA
AZX13003.1|3298956_3301401_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX12097.1|3301416_3302007_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX12098.1|3302250_3303201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12099.1|3303358_3304624_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX12100.1|3304657_3305755_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX12101.1|3306409_3307360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	3318647	3418760	4106395	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZX12112.1|3318647_3319598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12113.1|3320329_3320707_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX12114.1|3320691_3321393_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12115.1|3321536_3322229_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX12116.1|3322228_3323332_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX12117.1|3323441_3325814_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX12118.1|3325810_3327370_+	chaperone SurA	NA	NA	NA	NA	NA
AZX12119.1|3327394_3328192_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX12120.1|3328223_3329369_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX12121.1|3329473_3330916_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX13004.1|3330918_3332007_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12122.1|3334285_3335236_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12123.1|3335222_3335441_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12124.1|3336365_3336923_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX12125.1|3336898_3337249_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12126.1|3337417_3338212_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX12127.1|3338208_3339258_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX12128.1|3339257_3339947_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX12129.1|3340033_3340531_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX12130.1|3340562_3341879_-	protein TolB	NA	NA	NA	NA	NA
AZX12131.1|3341895_3342870_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX12132.1|3342906_3343365_-	protein TolR	NA	NA	NA	NA	NA
AZX12133.1|3343364_3344045_-	protein TolQ	NA	NA	NA	NA	NA
AZX12134.1|3344047_3344476_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX12135.1|3344528_3346259_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX12136.1|3346324_3346897_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX12137.1|3346877_3347564_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX12138.1|3347919_3348591_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX12139.1|3348597_3348798_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12140.1|3349140_3349422_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12141.1|3349418_3349952_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX12142.1|3349933_3350485_-	lysozyme	NA	NA	NA	NA	NA
AZX12143.1|3350463_3350706_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12144.1|3350710_3351523_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12145.1|3351522_3351786_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12146.1|3352004_3352421_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12147.1|3352425_3356382_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX12148.1|3356374_3356764_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX12149.1|3356760_3357294_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX12150.1|3357361_3357721_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12151.1|3357730_3360343_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX12152.1|3360368_3360659_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX12153.1|3360676_3361006_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX12154.1|3361015_3361534_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX12155.1|3361788_3362289_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX12156.1|3362296_3362719_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12157.1|3362715_3363114_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX12158.1|3363110_3363506_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX12159.1|3363505_3363706_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12160.1|3363707_3364190_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX12161.1|3364252_3364504_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12162.1|3364513_3365161_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX12163.1|3365178_3366129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12164.1|3366557_3367160_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX12165.1|3367282_3367525_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX13005.1|3367530_3368586_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX12166.1|3368614_3370033_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX12167.1|3370035_3371313_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX12168.1|3371299_3371749_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX12169.1|3372424_3373375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12170.1|3373392_3373614_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12171.1|3373628_3374327_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12172.1|3374319_3374640_+	hypothetical protein	NA	NA	NA	NA	NA
AZX13006.1|3375119_3375731_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX12173.1|3375796_3376009_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12174.1|3376260_3377211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12175.1|3377309_3378383_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12176.1|3378550_3379345_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX12177.1|3379384_3379909_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX12178.1|3379901_3381644_-	sulfite reductase	NA	NA	NA	NA	NA
AZX12179.1|3381853_3382612_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX12180.1|3382614_3383322_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX12181.1|3383338_3384220_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12182.1|3384230_3384989_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX13007.1|3384957_3385713_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12183.1|3385782_3387201_+	amidase	NA	NA	NA	NA	NA
AZX12184.1|3387222_3387873_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX12185.1|3388006_3388342_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX12186.1|3388430_3389381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12187.1|3389457_3391278_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX12188.1|3391282_3392356_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX12189.1|3392478_3393447_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX12190.1|3393520_3394432_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX12191.1|3394450_3395023_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX12192.1|3395103_3395652_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX12193.1|3395651_3397241_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX12194.1|3397310_3397550_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX12195.1|3397590_3398622_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX12196.1|3398681_3399863_-	monooxygenase	NA	NA	NA	NA	NA
AZX12197.1|3399959_3400412_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12198.1|3400421_3401762_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX12199.1|3402078_3403116_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12200.1|3403497_3403857_+	hypothetical protein	NA	NA	NA	NA	NA
AZX13008.1|3403940_3404882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12201.1|3404956_3405907_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12202.1|3406200_3407295_+	porin	NA	NA	NA	NA	NA
AZX12203.1|3407376_3408258_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX12204.1|3408279_3409119_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX12205.1|3409194_3410712_+	peptidase	NA	NA	NA	NA	NA
AZX12206.1|3410808_3411909_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX12207.1|3411925_3412348_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX12208.1|3412370_3412583_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX12209.1|3412629_3413550_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX13009.1|3413813_3414482_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12210.1|3414484_3414814_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX12211.1|3415020_3416454_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX12212.1|3416465_3416849_-	thioredoxin	NA	NA	NA	NA	NA
AZX12213.1|3416910_3417711_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12214.1|3417809_3418760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025355	Bordetella pertussis strain D919 chromosome, complete genome	4106395	4005463	4070375	4106395	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX12741.1|4005463_4005949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12742.1|4006167_4007148_+	protein BugT	NA	NA	NA	NA	NA
AZX12743.1|4007414_4008224_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX12744.1|4008263_4008944_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX12745.1|4008937_4009396_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX12746.1|4009407_4009770_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX12747.1|4009852_4010536_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX12748.1|4010591_4010900_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX12749.1|4010918_4011233_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX12750.1|4011229_4013704_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX12751.1|4013711_4015103_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX12752.1|4015099_4015285_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX12753.1|4015263_4015965_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX12754.1|4015961_4016783_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX13032.1|4016763_4017888_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX12755.1|4017880_4018900_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX12756.1|4019105_4020140_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX13033.1|4020240_4021032_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX12757.1|4021114_4021489_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX12758.1|4021466_4022876_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX12759.1|4022868_4024251_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX12760.1|4024585_4026190_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX12761.1|4026225_4027239_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX12762.1|4027249_4028176_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX12763.1|4028566_4029517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12764.1|4029686_4030913_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX12765.1|4031112_4031979_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX12766.1|4031971_4032934_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX12767.1|4033034_4033985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12768.1|4034083_4035034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12769.1|4035132_4036083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX12770.1|4036079_4037573_-	RND transporter	NA	NA	NA	NA	NA
AZX12771.1|4037569_4040677_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX12772.1|4040673_4043742_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX12773.1|4043738_4044989_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX12774.1|4045169_4045931_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX12775.1|4045963_4046614_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX12776.1|4046616_4047456_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX12777.1|4047696_4048440_+	hypothetical protein	NA	NA	NA	NA	NA
AZX12778.1|4048522_4048870_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX12779.1|4048967_4049810_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX12780.1|4049854_4050742_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX12781.1|4050768_4050957_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX12782.1|4051054_4052512_+	MFS transporter	NA	NA	NA	NA	NA
AZX12783.1|4052498_4054025_+	glycerol kinase	NA	NA	NA	NA	NA
AZX12784.1|4054043_4054511_-	hypothetical protein	NA	NA	NA	NA	NA
AZX12785.1|4054510_4055533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX12786.1|4055653_4056394_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX12787.1|4056448_4057549_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12788.1|4057550_4058741_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX12789.1|4058860_4059877_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX12790.1|4060195_4060867_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX12791.1|4060863_4061772_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX12792.1|4061983_4062631_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX12793.1|4066482_4067559_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX12794.1|4067569_4068379_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX12795.1|4068468_4069242_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX12796.1|4069424_4070375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
