The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	0	122073	4102613	protease,tRNA,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZX59742.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX59743.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX59744.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX59745.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX59746.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX59747.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX59748.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX59749.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX59750.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX59751.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX59752.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX59753.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX59754.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX59755.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX63127.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX59756.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59757.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX59758.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX59759.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59760.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX59761.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59762.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX59763.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX63128.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59764.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX59765.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX59766.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59767.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX59768.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX59769.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX59770.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX59771.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX59772.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX59773.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX59774.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX59775.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX59776.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59777.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59778.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX59779.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59780.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX59781.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX59782.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59783.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX59784.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX59785.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX59786.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX59787.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX59788.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX59789.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59790.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX59791.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX59792.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59793.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59794.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX59795.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX59796.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX59797.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX59798.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59799.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59800.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX59801.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX59802.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX59803.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX59804.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63129.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59805.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX59806.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63130.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59807.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX59808.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX59809.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX59810.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX59811.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX59812.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX59813.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX59814.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX59815.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX59816.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX63131.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX59817.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX59818.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59819.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX59820.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX59821.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX59822.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX59823.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59824.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX59825.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX59826.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX59827.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX59828.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX59829.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX59830.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX59831.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX59832.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX59833.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59834.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX59835.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX59836.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX59837.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX63132.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX59838.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63133.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX59839.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX59840.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX59841.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX59842.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX59843.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX59844.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	164894	225405	4102613	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX59876.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59877.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59878.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZX59879.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX59880.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX59881.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX59882.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63138.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZX59883.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59884.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZX59885.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZX59886.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX59887.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX59888.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59889.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX59890.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX59891.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX59892.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX59893.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZX59894.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX63139.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX59895.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59896.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX59897.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX59898.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59899.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX59900.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX59901.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX59902.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX59903.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX59904.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59905.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZX59906.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX59907.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59908.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX59909.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZX59910.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX59911.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZX59912.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX59913.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX59914.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX63140.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59915.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX59916.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX59917.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX59918.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX59919.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX59920.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX59921.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX59922.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX59923.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	233337	286925	4102613	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZX59931.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59932.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59933.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59934.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX59935.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX59936.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59937.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX59938.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59939.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX59940.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX59941.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX59942.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX59943.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX59944.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX59945.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX59946.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX59947.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63141.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX59948.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX59949.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX59950.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZX59951.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX59952.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59953.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX59954.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZX59955.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX59956.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59957.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX59958.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX59959.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX59960.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX59961.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX59962.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX59963.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX59964.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX59965.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX59966.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
AZX59967.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX59968.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AZX59969.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX59970.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX59971.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
AZX59972.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AZX59973.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX59974.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX59975.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX63142.1|284841_285978_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX59976.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	555277	614577	4102613	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZX60198.1|555277_556228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60199.1|557551_558328_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX60200.1|558362_560135_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX60201.1|560136_561039_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX60202.1|561163_561523_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX60203.1|561554_562517_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX60204.1|562615_563566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60205.1|563578_564514_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX60206.1|564573_565413_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX60207.1|565409_566579_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX60208.1|566575_567865_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60209.1|567907_568282_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX60210.1|568387_569125_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX60211.1|569132_569837_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX60212.1|570100_571621_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX60213.1|571676_572240_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX60214.1|572258_573290_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX60215.1|573286_574075_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX60216.1|574250_575240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60217.1|576996_577947_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60218.1|579169_580072_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60219.1|580073_580928_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX60220.1|580974_582084_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX60221.1|582094_582613_-	flavin reductase	NA	NA	NA	NA	NA
AZX60222.1|582642_583275_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX60223.1|583346_584006_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX60224.1|584002_585223_-	MFS transporter	NA	NA	NA	NA	NA
AZX60225.1|585491_586364_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX60226.1|586519_587257_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60227.1|587259_588855_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX63163.1|588986_589976_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60228.1|589972_590683_+	oxidoreductase	NA	NA	NA	NA	NA
AZX63164.1|590778_591795_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX60229.1|592066_592693_-	aminotransferase	NA	NA	NA	NA	NA
AZX60230.1|592748_593876_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX60231.1|593881_599599_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX60232.1|599882_600098_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60233.1|600166_601111_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX60234.1|601299_602235_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX60235.1|602352_603924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60236.1|604003_605212_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60237.1|605709_606627_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX60238.1|608987_609209_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63165.1|609539_610556_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX60239.1|610640_610892_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX60240.1|610895_611711_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX60241.1|611823_612702_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX60242.1|612813_614577_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	620732	674473	4102613	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZX60246.1|620732_621683_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60247.1|621751_622750_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60248.1|622754_623435_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX60249.1|623572_623965_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX63166.1|624072_625089_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX60250.1|625328_626114_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX60251.1|626208_627618_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZX60252.1|627628_628429_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX60253.1|628449_629220_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX60254.1|629262_629730_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX60255.1|629726_630677_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60256.1|632625_633504_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZX60257.1|634430_637409_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60258.1|637407_637776_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60259.1|637762_638713_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60260.1|638709_639798_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60261.1|639833_640697_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX60262.1|641836_642226_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX60263.1|642229_643012_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX60264.1|643045_643798_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX60265.1|644106_645246_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60266.1|645242_646034_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX60267.1|646030_646780_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX60268.1|646776_647649_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX60269.1|647648_648650_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX60270.1|648646_649810_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX60271.1|649835_650519_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60272.1|650472_651807_+	CoA ligase	NA	NA	NA	NA	NA
AZX60273.1|651799_652894_+	CoA transferase	NA	NA	NA	NA	NA
AZX63167.1|653660_654611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60274.1|656551_657811_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60275.1|657807_659346_+	SpoVR family protein	NA	NA	NA	NA	NA
AZX60276.1|659342_660539_-	MFS transporter	NA	NA	NA	NA	NA
AZX60277.1|660535_661927_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX60278.1|661923_662940_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60279.1|663008_664244_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX60280.1|664344_665139_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60281.1|665508_665916_+	GFA family protein	NA	NA	NA	NA	NA
AZX60282.1|666333_666606_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX60283.1|667187_668042_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX60284.1|668142_668445_+	urease subunit gamma	NA	NA	NA	NA	NA
AZX60285.1|668471_669107_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX60286.1|669123_669432_+	urease subunit beta	NA	NA	NA	NA	NA
AZX60287.1|669428_671144_+	urease subunit alpha	NA	NA	NA	NA	NA
AZX60288.1|671146_671764_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX60289.1|671864_672449_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX60290.1|672473_673118_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX60291.1|673522_674473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	723361	763362	4102613	protease,tRNA,integrase,transposase	Pseudomonas_phage(33.33%)	32	720660:720678	740548:740566
720660:720678	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX60328.1|723361_724009_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX60329.1|724005_724788_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX60330.1|724860_725952_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX60331.1|726231_727359_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX60332.1|727700_728747_+	Fic family protein	NA	NA	NA	NA	NA
AZX63170.1|728757_728898_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX60333.1|728894_732014_+	restriction endonuclease	NA	NA	NA	NA	NA
AZX60334.1|732015_734967_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX60335.1|734982_736194_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX60336.1|736190_736391_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60337.1|736377_737328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60338.1|737344_737839_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX60339.1|737842_738100_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60340.1|738124_739555_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZX60341.1|739624_739921_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZX60342.1|740704_741655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
740548:740566	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZX60343.1|742073_744638_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX60344.1|744682_746536_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60345.1|746868_748440_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX60346.1|749881_750832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60347.1|750917_751658_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60348.1|751884_752832_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60349.1|754219_755170_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60350.1|755156_755345_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60351.1|755363_756179_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60352.1|756311_757751_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX60353.1|757764_758106_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX60354.1|758160_759816_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX60355.1|759967_760978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60356.1|761110_761884_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60357.1|762227_762425_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60358.1|762411_763362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	773289	820907	4102613	holin,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZX60366.1|773289_774240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60367.1|774378_775131_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZX60368.1|775369_777094_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZX60369.1|777113_778373_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX60370.1|778387_779482_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZX60371.1|779478_781605_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZX60372.1|781617_782298_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZX63174.1|782575_783949_+	MFS transporter	NA	NA	NA	NA	NA
AZX60373.1|783950_784970_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZX60374.1|785033_786005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60375.1|786069_787020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60376.1|787118_787961_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX60377.1|787960_788296_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX60378.1|788366_789785_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX60379.1|790064_791105_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX60380.1|791184_791436_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX60381.1|791546_792845_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX60382.1|792993_793848_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX60383.1|793844_794735_+	acyltransferase	NA	NA	NA	NA	NA
AZX60384.1|794777_795689_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX60385.1|795715_796408_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX60386.1|796422_797403_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX60387.1|797415_799557_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX60388.1|799605_800574_-	nickel transporter	NA	NA	NA	NA	NA
AZX63175.1|800564_801188_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX60389.1|801193_802129_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60390.1|802125_803022_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX60391.1|803018_803741_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX60392.1|803731_803932_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60393.1|804069_804573_+	transcriptional repressor	NA	NA	NA	NA	NA
AZX60394.1|804849_805965_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX60395.1|806107_806572_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX60396.1|806719_807259_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX60397.1|807280_808615_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX63176.1|808628_808934_-	RND transporter	NA	NA	NA	NA	NA
AZX60398.1|809358_809940_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX60399.1|810021_810972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60400.1|811070_812021_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60401.1|812461_813367_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX60402.1|813422_815030_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX60403.1|815283_816789_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX60404.1|816803_817268_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX60405.1|817557_818508_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60406.1|818670_819201_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60407.1|819200_819512_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZX60408.1|819956_820907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1005123	1099159	4102613	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZX60549.1|1005123_1006074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60550.1|1006176_1006839_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60551.1|1006941_1007352_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60552.1|1007456_1008458_+	amidase	NA	NA	NA	NA	NA
AZX60553.1|1008460_1009657_+	CoA transferase	NA	NA	NA	NA	NA
AZX60554.1|1009677_1010481_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX60555.1|1010561_1010858_+	histidine kinase	NA	NA	NA	NA	NA
AZX60556.1|1010888_1011452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63189.1|1011492_1012350_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60557.1|1012357_1013107_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZX60558.1|1013128_1014001_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60559.1|1014029_1014809_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZX60560.1|1014842_1015640_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60561.1|1017091_1018264_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZX60562.1|1018294_1018687_+	RidA family protein	NA	NA	NA	NA	NA
AZX60563.1|1018680_1019541_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX60564.1|1019544_1020507_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63190.1|1021283_1021973_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZX60565.1|1022833_1023784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60566.1|1024133_1025003_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60567.1|1025073_1025769_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZX60568.1|1025758_1026268_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZX60569.1|1026264_1027485_+	MFS transporter	NA	NA	NA	NA	NA
AZX60570.1|1027432_1028335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60571.1|1029221_1030508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60572.1|1030546_1031920_+	amidase	NA	NA	NA	NA	NA
AZX60573.1|1031958_1032660_-	riboflavin synthase	NA	NA	NA	NA	NA
AZX60574.1|1032958_1033948_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60575.1|1034048_1034510_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX60576.1|1034525_1035074_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX60577.1|1035215_1036691_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZX60578.1|1036796_1037888_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX60579.1|1037891_1038674_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX60580.1|1038683_1039472_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZX60581.1|1040597_1041032_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX60582.1|1041028_1042039_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX60583.1|1042082_1043009_-	VOC family protein	NA	NA	NA	NA	NA
AZX60584.1|1043294_1043663_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZX63191.1|1043879_1044830_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63192.1|1044811_1047301_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX60585.1|1047349_1048042_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX60586.1|1048114_1049314_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX60587.1|1049331_1050237_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60588.1|1050352_1051282_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX63193.1|1051307_1052654_+	MFS transporter	NA	NA	NA	NA	NA
AZX63194.1|1052681_1053431_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX60589.1|1053444_1054227_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX60590.1|1054419_1055370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60591.1|1055431_1056577_-	porin	NA	NA	NA	NA	NA
AZX60592.1|1057053_1057890_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX60593.1|1057959_1058925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60594.1|1058921_1059872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60595.1|1059858_1060053_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60596.1|1060257_1060800_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60597.1|1061835_1062786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60598.1|1063027_1063396_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60599.1|1063441_1064566_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63195.1|1065700_1066441_-	oxidoreductase	NA	NA	NA	NA	NA
AZX60600.1|1066544_1067165_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60601.1|1067268_1068219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60602.1|1068215_1070324_-	AsmA family protein	NA	NA	NA	NA	NA
AZX60603.1|1070468_1071128_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX60604.1|1071159_1071624_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX60605.1|1071899_1072085_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60606.1|1072136_1072889_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX60607.1|1072895_1074158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60608.1|1074199_1075438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60609.1|1076515_1077643_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX60610.1|1077653_1078481_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX60611.1|1078467_1079334_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX60612.1|1080700_1081105_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60613.1|1081196_1082147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63196.1|1082516_1083428_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX60614.1|1083442_1084153_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60615.1|1084149_1085394_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX60616.1|1085395_1085830_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX60617.1|1085858_1086164_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX60618.1|1086057_1086276_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60619.1|1086262_1087213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60620.1|1087269_1088418_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX60621.1|1088498_1089449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60622.1|1089980_1090778_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60623.1|1090825_1091479_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX60624.1|1091435_1092524_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX60625.1|1092688_1094914_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX60626.1|1097191_1098088_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZX60627.1|1097976_1098222_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60628.1|1098208_1099159_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1129545	1200516	4102613	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZX60658.1|1129545_1130496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60659.1|1130552_1131665_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZX60660.1|1134048_1134999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60661.1|1135589_1136366_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX60662.1|1136483_1136747_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX60663.1|1136847_1137852_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX60664.1|1138052_1139654_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX60665.1|1139679_1140438_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX60666.1|1140529_1141186_-	adenylate kinase	NA	NA	NA	NA	NA
AZX60667.1|1141276_1142041_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX60668.1|1142050_1142239_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60669.1|1142294_1143338_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX60670.1|1143334_1143748_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX60671.1|1143744_1144365_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX60672.1|1144645_1145596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60673.1|1145763_1147155_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX60674.1|1147227_1147806_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX60675.1|1147922_1149320_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX60676.1|1149435_1150641_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX60677.1|1150740_1151259_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX60678.1|1151353_1151599_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX60679.1|1151826_1152141_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX60680.1|1152230_1157420_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX63197.1|1157416_1159585_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX60681.1|1159604_1161956_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX60682.1|1161960_1163280_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX60683.1|1163298_1164972_+	MCE family protein	NA	NA	NA	NA	NA
AZX60684.1|1164976_1165645_+	lipoprotein	NA	NA	NA	NA	NA
AZX60685.1|1165801_1169623_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX60686.1|1169953_1170904_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60687.1|1170925_1172071_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60688.1|1172219_1173149_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX60689.1|1173145_1174234_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX60690.1|1174230_1175034_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX60691.1|1175030_1175762_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX60692.1|1175819_1177109_-	MFS transporter	NA	NA	NA	NA	NA
AZX60693.1|1177205_1177808_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60694.1|1182361_1182700_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX60695.1|1183368_1183674_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60696.1|1185380_1186331_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60697.1|1186327_1187659_-	MFS transporter	NA	NA	NA	NA	NA
AZX60698.1|1188898_1190920_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX60699.1|1190912_1191554_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX60700.1|1191550_1191958_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX60701.1|1191954_1192755_+	SURF1 family protein	NA	NA	NA	NA	NA
AZX60702.1|1192829_1193534_+	oxidoreductase	NA	NA	NA	NA	NA
AZX60703.1|1193565_1194360_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX60704.1|1194356_1195307_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60705.1|1195405_1196356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60706.1|1196454_1196889_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX60707.1|1196971_1199308_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX63198.1|1199499_1200516_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1217750	1274457	4102613	tRNA,transposase	Agrobacterium_phage(20.0%)	43	NA	NA
AZX60722.1|1217750_1218701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60723.1|1218799_1219750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60724.1|1219852_1220437_+	nitroreductase	NA	NA	NA	NA	NA
AZX63201.1|1220506_1221928_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX60725.1|1222035_1223382_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX60726.1|1223420_1225055_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX60727.1|1225098_1225437_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX60728.1|1225461_1225836_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX60729.1|1228948_1229830_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60730.1|1229937_1231566_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX60731.1|1231607_1233125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60732.1|1233219_1234164_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60733.1|1235345_1236248_-	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX60734.1|1236244_1237510_-	peptidase M48	NA	NA	NA	NA	NA
AZX60735.1|1237554_1238100_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX60736.1|1238133_1238820_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX60737.1|1238791_1239721_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX60738.1|1239892_1240882_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX60739.1|1240946_1241231_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX60740.1|1241246_1242011_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX63202.1|1242007_1242514_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX60741.1|1243675_1244626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60742.1|1244713_1246366_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX60743.1|1246376_1247165_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX60744.1|1247164_1247635_+	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX60745.1|1247709_1249023_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX60746.1|1249076_1249682_-	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX60747.1|1249998_1250949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60748.1|1250945_1251896_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60749.1|1251882_1252233_-	hypothetical protein	NA	NA	NA	NA	NA
AZX60750.1|1252156_1253185_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX60751.1|1253264_1254563_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX60752.1|1254559_1255141_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX60753.1|1255453_1259500_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX60754.1|1259740_1267402_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX60755.1|1267398_1268349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60756.1|1269488_1269962_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60757.1|1270101_1270722_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX60758.1|1270857_1271658_+	aldolase	NA	NA	NA	NA	NA
AZX60759.1|1271712_1272804_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60760.1|1272825_1273269_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX60761.1|1273297_1273930_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX60762.1|1274040_1274457_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 12
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1296452	1361081	4102613	transposase	Klosneuvirus(16.67%)	54	NA	NA
AZX60781.1|1296452_1297403_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60782.1|1297718_1298186_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX60783.1|1298321_1299704_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
AZX60784.1|1299700_1300825_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX60785.1|1300821_1303458_+	GTP-binding protein	NA	NA	NA	NA	NA
AZX60786.1|1303873_1304824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60787.1|1308568_1309180_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX60788.1|1309402_1310863_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX60789.1|1310959_1312552_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX60790.1|1312538_1312817_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60791.1|1312875_1313163_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX60792.1|1313164_1314505_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX60793.1|1314600_1315290_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60794.1|1315302_1316733_+	MFS transporter	NA	NA	NA	NA	NA
AZX60795.1|1318457_1319279_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60796.1|1319289_1320861_+	amidohydrolase	NA	NA	NA	NA	NA
AZX60797.1|1320889_1321867_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60798.1|1321893_1322697_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX60799.1|1322693_1323488_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60800.1|1323495_1324731_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX60801.1|1324723_1325158_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX60802.1|1325907_1326858_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60803.1|1327479_1329207_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX60804.1|1329318_1330677_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX60805.1|1330797_1330983_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60806.1|1330969_1331920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60807.1|1331960_1333031_+	FUSC family protein	NA	NA	NA	NA	NA
AZX60808.1|1333053_1333932_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX60809.1|1334103_1335075_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX60810.1|1335237_1336080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX60811.1|1336241_1336922_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX60812.1|1336915_1338085_+	amine oxidase	NA	NA	NA	NA	NA
AZX60813.1|1338081_1339113_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX60814.1|1339156_1340398_+	MFS transporter	NA	NA	NA	NA	NA
AZX60815.1|1340432_1341965_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX60816.1|1342045_1342669_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX60817.1|1342699_1343311_+	LysE family translocator	NA	NA	NA	NA	NA
AZX60818.1|1343346_1343817_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX60819.1|1344248_1345253_+	peptidase M20	NA	NA	NA	NA	NA
AZX60820.1|1345289_1346804_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX60821.1|1346807_1347767_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60822.1|1347795_1348599_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX60823.1|1348600_1350235_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX60824.1|1350318_1351380_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX60825.1|1351578_1351848_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60826.1|1351851_1352376_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX60827.1|1353737_1354808_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX60828.1|1354880_1355519_+	DedA family protein	NA	NA	NA	NA	NA
AZX60829.1|1355813_1356041_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX60830.1|1356163_1356877_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX60831.1|1357121_1358072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60832.1|1358175_1358457_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60833.1|1358571_1360020_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX60834.1|1360130_1361081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1451314	1503467	4102613	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
AZX60916.1|1451314_1452265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60917.1|1452431_1452785_+	cytochrome C	NA	NA	NA	NA	NA
AZX60918.1|1452797_1453160_+	cytochrome	NA	NA	NA	NA	NA
AZX60919.1|1453201_1453627_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX60920.1|1453829_1455086_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX60921.1|1455284_1456265_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60922.1|1456414_1457656_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60923.1|1457754_1458705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60924.1|1458713_1459409_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX60925.1|1462230_1462830_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX60926.1|1462840_1465006_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX60927.1|1465029_1466814_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX60928.1|1466813_1466903_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX60929.1|1467597_1467870_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX60930.1|1467869_1469936_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX60931.1|1469932_1470883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60932.1|1470981_1471932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60933.1|1472047_1472380_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX60934.1|1472376_1473063_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX60935.1|1473049_1474009_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX63211.1|1474050_1476411_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX60936.1|1476410_1477043_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX60937.1|1477105_1478485_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX60938.1|1478531_1479887_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX60939.1|1480165_1480414_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60940.1|1480601_1480919_-	virulence factor	NA	NA	NA	NA	NA
AZX60941.1|1481191_1481707_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX60942.1|1481800_1481962_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60943.1|1481977_1482733_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX60944.1|1483071_1483278_+	hypothetical protein	NA	NA	NA	NA	NA
AZX60945.1|1483285_1483945_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX60946.1|1484239_1486444_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX60947.1|1486554_1487778_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX60948.1|1487900_1488875_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX60949.1|1488942_1490136_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX60950.1|1490150_1490951_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX60951.1|1490947_1492804_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX60952.1|1492800_1493406_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX60953.1|1493424_1494810_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX60954.1|1495535_1496762_+	transporter	NA	NA	NA	NA	NA
AZX60955.1|1496850_1497633_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX60956.1|1497731_1498682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX60957.1|1498708_1499482_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX60958.1|1499493_1500735_+	MFS transporter	NA	NA	NA	NA	NA
AZX60959.1|1502516_1503467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1547392	1606254	4102613	protease,tRNA,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZX63212.1|1547392_1547881_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX61007.1|1547998_1548577_+|protease	protease	protease	NA	NA	NA	NA
AZX61008.1|1548649_1549051_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX61009.1|1549149_1550100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61010.1|1550106_1551219_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX61011.1|1551905_1553108_+	MFS transporter	NA	NA	NA	NA	NA
AZX61012.1|1553311_1555972_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61013.1|1555984_1559389_+	nuclease	NA	NA	NA	NA	NA
AZX61014.1|1560056_1562282_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX61015.1|1562328_1562655_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX61016.1|1562705_1563314_+	recombination protein RecR	NA	NA	NA	NA	NA
AZX61017.1|1563412_1564363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61018.1|1564432_1565197_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZX61019.1|1565193_1565793_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63213.1|1565896_1566742_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZX61020.1|1566807_1567434_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZX61021.1|1567430_1568381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61022.1|1568367_1568556_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61023.1|1568479_1569601_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZX61024.1|1569581_1570583_-	aminopeptidase	NA	NA	NA	NA	NA
AZX61025.1|1570688_1572200_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZX61026.1|1572196_1573501_-	peptidase	NA	NA	NA	NA	NA
AZX61027.1|1573612_1574173_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX61028.1|1574440_1574995_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZX61029.1|1575450_1575666_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZX63214.1|1575920_1578518_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZX61030.1|1578514_1579702_+	cupin	NA	NA	NA	NA	NA
AZX61031.1|1580359_1580974_+	fimbrial protein	NA	NA	NA	NA	NA
AZX61032.1|1581062_1582190_-	lipoprotein	NA	NA	NA	NA	NA
AZX61033.1|1582201_1583107_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZX61034.1|1583999_1584950_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61035.1|1585131_1585884_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZX61036.1|1585952_1586612_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZX61037.1|1586608_1587337_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZX61038.1|1587349_1589629_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZX61039.1|1589653_1589857_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZX61040.1|1589898_1590546_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZX61041.1|1590666_1591584_-	cytochrome C	NA	NA	NA	NA	NA
AZX61042.1|1591580_1592294_-	cytochrome C	NA	NA	NA	NA	NA
AZX61043.1|1592531_1593302_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61044.1|1593306_1593906_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZX61045.1|1594150_1595641_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZX61046.1|1595699_1595984_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX61047.1|1595980_1596109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61048.1|1596121_1596277_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61049.1|1596549_1597476_-	YicC family protein	NA	NA	NA	NA	NA
AZX61050.1|1597612_1598353_+	ribonuclease PH	NA	NA	NA	NA	NA
AZX61051.1|1598519_1599896_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX61052.1|1600077_1600983_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX61053.1|1601017_1602757_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZX61054.1|1602634_1604437_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX61055.1|1604554_1605205_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZX61056.1|1605303_1606254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	1651426	1707017	4102613	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZX61087.1|1651426_1652377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61088.1|1652435_1653209_+	oxidoreductase	NA	NA	NA	NA	NA
AZX61089.1|1653201_1654758_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZX61090.1|1654754_1655705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61091.1|1657031_1657634_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61092.1|1657873_1658575_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX61093.1|1658568_1659351_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX61094.1|1659535_1660486_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61095.1|1660584_1661322_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX61096.1|1661511_1662270_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61097.1|1662316_1663306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61098.1|1663483_1664452_-	transporter	NA	NA	NA	NA	NA
AZX61099.1|1665991_1666960_+	AAA family ATPase	NA	NA	NA	NA	NA
AZX61100.1|1666968_1667910_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX61101.1|1668383_1669394_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63218.1|1669384_1670899_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX61102.1|1670895_1672242_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63219.1|1672244_1673279_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX61103.1|1673328_1674954_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX61104.1|1675506_1676457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61105.1|1676561_1677509_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63220.1|1677562_1679377_-	histidine kinase	NA	NA	NA	NA	NA
AZX61106.1|1679369_1680044_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX61107.1|1680173_1683248_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZX61108.1|1683261_1683561_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX63221.1|1683875_1684499_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX61109.1|1684742_1685612_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZX61110.1|1685589_1686534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63222.1|1686619_1687591_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63223.1|1687658_1688432_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61111.1|1688428_1689625_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX61112.1|1689655_1690606_-	hydrolase	NA	NA	NA	NA	NA
AZX61113.1|1690827_1691517_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX61114.1|1691581_1692337_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61115.1|1692388_1693381_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61116.1|1693390_1694344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63224.1|1694459_1695422_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61117.1|1696823_1697252_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61118.1|1697248_1698199_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63225.1|1698492_1699215_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX61119.1|1699653_1700841_-	MFS transporter	NA	NA	NA	NA	NA
AZX61120.1|1700844_1701225_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61121.1|1702944_1703916_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61122.1|1703929_1704643_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61123.1|1704647_1705565_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61124.1|1705671_1705968_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61125.1|1706066_1707017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	2148953	2204189	4102613	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZX61469.1|2148953_2149904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61470.1|2150104_2150914_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX61471.1|2151038_2151989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61472.1|2151985_2152879_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX61473.1|2153003_2153198_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX61474.1|2153197_2153539_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX61475.1|2153548_2155411_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX61476.1|2155540_2156053_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX61477.1|2156055_2156379_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX61478.1|2156380_2156791_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX61479.1|2156828_2158040_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX61480.1|2158057_2158570_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX61481.1|2158785_2159277_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX61482.1|2159529_2161566_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZX61483.1|2161643_2162846_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX61484.1|2162896_2163625_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX61485.1|2165182_2166133_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61486.1|2166703_2166916_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61487.1|2166933_2167665_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61488.1|2167699_2168341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX61489.1|2168333_2169050_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX61490.1|2171214_2171991_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX61491.1|2172012_2173170_-	thiolase	NA	NA	NA	NA	NA
AZX61492.1|2173166_2173598_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61493.1|2173594_2174398_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX61494.1|2174411_2174867_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX61495.1|2174879_2175851_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61496.1|2175916_2177140_-	CoA transferase	NA	NA	NA	NA	NA
AZX61497.1|2177367_2178318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61498.1|2178441_2180895_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX61499.1|2181083_2182388_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX61500.1|2182492_2183146_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX61501.1|2183148_2184459_-	trigger factor	NA	NA	NA	NA	NA
AZX61502.1|2184637_2185216_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX61503.1|2185327_2185528_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX61504.1|2185873_2186440_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX61505.1|2186523_2186727_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX61506.1|2187033_2187354_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61507.1|2187395_2187677_-	hypothetical protein	NA	NA	NA	NA	NA
AZX61508.1|2187751_2189008_-	autotransporter Phg	NA	NA	NA	NA	NA
AZX61509.1|2189390_2189720_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX61510.1|2191290_2192112_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX61511.1|2192111_2193251_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX61512.1|2193257_2194154_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX61513.1|2194150_2196076_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX61514.1|2196435_2199048_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX61515.1|2199100_2201401_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX61516.1|2201397_2202606_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX61517.1|2202867_2203242_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61518.1|2203238_2204189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	2538172	2576762	4102613	protease,transposase	Planktothrix_phage(14.29%)	35	NA	NA
AZX61798.1|2538172_2539123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61799.1|2539301_2540996_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX61800.1|2540992_2542078_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX61801.1|2542125_2543025_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61802.1|2543035_2543680_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX61803.1|2544701_2547944_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX61804.1|2547954_2549052_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX61805.1|2549314_2550298_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX61806.1|2550396_2551347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61807.1|2551445_2552396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61808.1|2552405_2553095_-	VIT family protein	NA	NA	NA	NA	NA
AZX61809.1|2553154_2553592_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX61810.1|2553637_2554531_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX61811.1|2554578_2555751_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX61812.1|2555747_2556902_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX61813.1|2557098_2557449_-	RnfH family protein	NA	NA	NA	NA	NA
AZX61814.1|2557438_2557873_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX61815.1|2557889_2558840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61816.1|2558987_2559455_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX61817.1|2559435_2560593_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX61818.1|2560658_2561585_-	paraslipin	NA	NA	NA	NA	NA
AZX61819.1|2561702_2562653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61820.1|2562687_2563113_-	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX61821.1|2563236_2563956_+	GMP synthase	NA	NA	NA	NA	NA
AZX61822.1|2564023_2566387_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX61823.1|2566548_2567376_+	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX61824.1|2567387_2568161_-	RNA methyltransferase	NA	NA	NA	NA	NA
AZX61825.1|2568157_2568763_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX61826.1|2568749_2569931_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX61827.1|2569927_2570722_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX61828.1|2570722_2571178_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX61829.1|2571249_2572341_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX63262.1|2572349_2572913_-	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX61830.1|2573038_2575375_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX61831.1|2575427_2576762_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 19
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	2604933	2671433	4102613	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX61858.1|2604933_2605884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61859.1|2606253_2606826_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX61860.1|2606828_2607839_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX61861.1|2607831_2608332_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX61862.1|2608342_2608684_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX61863.1|2608695_2609487_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX61864.1|2609503_2609773_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX61865.1|2609795_2610584_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX63265.1|2610630_2611647_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX61866.1|2611863_2613306_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX61867.1|2613484_2615104_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX61868.1|2615224_2617045_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX61869.1|2617123_2618656_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX61870.1|2618689_2620336_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX61871.1|2620405_2621428_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX61872.1|2621445_2622579_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX61873.1|2622581_2623271_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX61874.1|2623270_2624056_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX61875.1|2624099_2624864_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX61876.1|2624902_2626324_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX61877.1|2626389_2627094_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX61878.1|2627141_2627561_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX61879.1|2627573_2627981_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX63266.1|2628164_2628875_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX61880.1|2629001_2629292_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX61881.1|2629309_2629792_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX61882.1|2634297_2635452_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX63267.1|2635757_2636774_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX61883.1|2637020_2637809_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX61884.1|2637875_2638556_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX61885.1|2638552_2639323_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX61886.1|2639421_2640372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZX61887.1|2640427_2641345_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX61888.1|2641355_2642534_-	mandelate racemase	NA	NA	NA	NA	NA
AZX61889.1|2642553_2643549_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61890.1|2645137_2645746_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX61891.1|2645733_2646774_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX61892.1|2646791_2647754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61893.1|2647750_2648944_-	CoA transferase	NA	NA	NA	NA	NA
AZX61894.1|2648940_2649738_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX61895.1|2649763_2650750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX61896.1|2650768_2652808_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX63268.1|2653009_2653690_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61897.1|2653703_2654615_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX61898.1|2654611_2655190_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX61899.1|2655328_2656234_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61900.1|2656241_2659661_+	nuclease	NA	NA	NA	NA	NA
AZX61901.1|2659648_2662249_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX61902.1|2663204_2663837_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX61903.1|2664230_2664989_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61904.1|2664985_2666188_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX61905.1|2666375_2667326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX61906.1|2668233_2669379_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX63269.1|2669398_2670121_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX61907.1|2670237_2670417_+	hypothetical protein	NA	NA	NA	NA	NA
AZX61908.1|2670482_2671433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	2875545	2956825	4102613	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZX62073.1|2875545_2876496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62074.1|2876492_2877395_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62075.1|2877482_2878241_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX62076.1|2878253_2879402_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZX62077.1|2879442_2880870_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX62078.1|2881099_2882314_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX62079.1|2882359_2885230_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX62080.1|2887640_2888129_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX62081.1|2888254_2890951_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX62082.1|2891105_2893388_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX62083.1|2893555_2894188_+	fimbrial protein	NA	NA	NA	NA	NA
AZX62084.1|2894286_2895237_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX62085.1|2895283_2895838_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZX62086.1|2895905_2896751_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZX62087.1|2896820_2897789_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX62088.1|2897788_2899585_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62089.1|2901484_2905411_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX62090.1|2905701_2905878_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62091.1|2906146_2909377_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZX62092.1|2909658_2910486_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX62093.1|2910519_2911215_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZX62094.1|2911207_2912488_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZX62095.1|2912497_2913475_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63284.1|2913456_2915157_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZX62096.1|2915259_2916363_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZX62097.1|2916393_2917149_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX62098.1|2917155_2918676_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZX62099.1|2918718_2919021_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62100.1|2919017_2919650_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62101.1|2919728_2921594_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX62102.1|2921590_2922406_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX62103.1|2922413_2923529_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX62104.1|2924433_2925312_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX62105.1|2925311_2926136_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX62106.1|2926303_2927254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62107.1|2927436_2930316_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX62108.1|2930297_2931074_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX62109.1|2931166_2932630_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX62110.1|2932626_2932998_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX62111.1|2933015_2934329_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62112.1|2934365_2934824_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX62113.1|2934936_2935887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62114.1|2935883_2936897_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX62115.1|2937036_2938023_+	homoserine kinase	NA	NA	NA	NA	NA
AZX62116.1|2938066_2938867_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62117.1|2939669_2940620_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62118.1|2940771_2941374_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62119.1|2941392_2942025_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX62120.1|2942262_2944149_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX62121.1|2944167_2945010_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX62122.1|2945006_2946365_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX62123.1|2946585_2947380_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX62124.1|2947610_2949104_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZX62125.1|2949339_2951421_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX62126.1|2951615_2952656_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX62127.1|2952790_2953807_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX62128.1|2953828_2954686_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX63285.1|2954730_2955507_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX62129.1|2955874_2956825_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	2965893	3014831	4102613	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZX62137.1|2965893_2966307_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX62138.1|2966347_2966665_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX62139.1|2966749_2967466_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63286.1|2967729_2969151_+	siroheme synthase	NA	NA	NA	NA	NA
AZX62140.1|2969217_2971965_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZX63287.1|2972297_2973314_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX63288.1|2973649_2974291_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX62141.1|2974381_2975818_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX62142.1|2975975_2977049_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX62143.1|2977045_2978182_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX62144.1|2978326_2978671_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX62145.1|2978737_2980618_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX62146.1|2980667_2981603_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX63289.1|2981935_2982952_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX62147.1|2983889_2985317_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX62148.1|2985313_2986336_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZX62149.1|2986325_2986799_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZX62150.1|2986924_2987827_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZX62151.1|2987823_2989467_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZX63290.1|2989463_2990471_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX63291.1|2991301_2992318_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX62152.1|2992417_2993050_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX62153.1|2993058_2993448_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX62154.1|2993500_2994553_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX62155.1|2995416_2997123_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX62156.1|2997196_2997697_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX62157.1|2997711_2999769_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX62158.1|2999795_3000089_-	response regulator	NA	NA	NA	NA	NA
AZX62159.1|3000190_3001138_-	motility protein MotB	NA	NA	NA	NA	NA
AZX62160.1|3001150_3002026_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX62161.1|3002146_3002707_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX62162.1|3002741_3003065_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX62163.1|3003500_3004238_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX62164.1|3004536_3005487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62165.1|3005730_3005994_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX62166.1|3006067_3006349_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62167.1|3006365_3007226_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX62168.1|3007222_3007558_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62169.1|3007611_3008262_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX62170.1|3009942_3010887_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62171.1|3010932_3011250_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62172.1|3011252_3012191_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX62173.1|3012368_3012854_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX62174.1|3012872_3013421_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX62175.1|3013697_3014831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	3026438	3098932	4102613	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZX62184.1|3026438_3027389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62185.1|3027431_3028607_+	flagellin FliC	NA	NA	NA	NA	NA
AZX62186.1|3028828_3030619_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX62187.1|3030631_3032293_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX62188.1|3032305_3035011_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX62189.1|3035303_3037058_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX62190.1|3037054_3037681_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX62191.1|3037677_3038529_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX62192.1|3038604_3040719_+	M3 family peptidase	NA	NA	NA	NA	NA
AZX62193.1|3040869_3041520_+	SCO family protein	NA	NA	NA	NA	NA
AZX62194.1|3041665_3041917_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX62195.1|3041986_3043369_-	multidrug transporter	NA	NA	NA	NA	NA
AZX62196.1|3043365_3046545_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX63293.1|3047352_3048270_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62197.1|3048321_3049053_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX62198.1|3049112_3049685_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX63294.1|3051193_3052210_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX62199.1|3052347_3053397_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX62200.1|3053501_3054452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62201.1|3054547_3055273_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZX62202.1|3055483_3055864_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZX62203.1|3056169_3057042_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZX62204.1|3057049_3057430_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62205.1|3057583_3058858_-	radical SAM protein	NA	NA	NA	NA	NA
AZX63295.1|3060345_3061254_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZX62206.1|3062051_3063116_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZX62207.1|3064952_3065987_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX62208.1|3066176_3066818_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX62209.1|3066900_3068727_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX62210.1|3068970_3069900_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZX62211.1|3069899_3070649_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZX62212.1|3070720_3071635_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZX62213.1|3071654_3072800_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZX62214.1|3072860_3073772_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZX62215.1|3073852_3074803_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62216.1|3074901_3075486_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX62217.1|3075520_3076510_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX62218.1|3076506_3077448_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX62219.1|3077444_3078665_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX62220.1|3078707_3079022_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX62221.1|3079213_3079573_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX62222.1|3079574_3081305_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX62223.1|3081477_3082149_-	cytidylate kinase	NA	NA	NA	NA	NA
AZX62224.1|3082163_3083492_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX62225.1|3083488_3084388_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX62226.1|3084474_3085560_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZX62227.1|3085552_3086686_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX62228.1|3086685_3089367_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX62229.1|3089737_3090319_+	OmpA family protein	NA	NA	NA	NA	NA
AZX62230.1|3090396_3091170_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX62231.1|3091166_3091844_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX62232.1|3092059_3093241_+	MFS transporter	NA	NA	NA	NA	NA
AZX62233.1|3093717_3093975_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62234.1|3094013_3094196_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX62235.1|3094225_3095176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63296.1|3095305_3095698_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX62236.1|3095974_3096886_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX62237.1|3097010_3097985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62238.1|3097981_3098932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	3112439	3165957	4102613	holin,transposase	Bacillus_phage(33.33%)	46	NA	NA
AZX62249.1|3112439_3113390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62250.1|3113502_3113754_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62251.1|3113947_3114163_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62252.1|3114259_3115378_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX62253.1|3115497_3115710_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62254.1|3115869_3116091_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62255.1|3116143_3117094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62256.1|3118270_3119641_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX62257.1|3119673_3120465_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62258.1|3120477_3121533_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62259.1|3121558_3122434_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62260.1|3122539_3122788_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62261.1|3122822_3124277_-	carboxylase	NA	NA	NA	NA	NA
AZX62262.1|3124273_3124795_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX62263.1|3124823_3126176_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX62264.1|3126399_3129288_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX62265.1|3131432_3132734_+	phospholipase	NA	NA	NA	NA	NA
AZX62266.1|3132748_3133465_-	flagellar brake protein	NA	NA	NA	NA	NA
AZX62267.1|3133746_3134427_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX62268.1|3134438_3134606_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62269.1|3134714_3134867_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62270.1|3134954_3135614_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX62271.1|3135994_3137845_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX62272.1|3137841_3138792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62273.1|3139955_3141671_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZX62274.1|3141681_3142173_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZX62275.1|3142245_3143262_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZX62276.1|3143429_3144209_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZX62277.1|3144227_3144755_-	lipoprotein	NA	NA	NA	NA	NA
AZX62278.1|3144753_3144960_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62279.1|3145048_3145318_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZX62280.1|3145408_3147568_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZX62281.1|3147688_3148408_+	lipoprotein	NA	NA	NA	NA	NA
AZX62282.1|3148404_3149355_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62283.1|3149495_3150713_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX62284.1|3150706_3151318_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX62285.1|3151951_3152929_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX62286.1|3153072_3153819_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX62287.1|3153840_3154287_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX62288.1|3155074_3157306_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX62289.1|3157328_3158129_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62290.1|3158410_3159643_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX62291.1|3159753_3160743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62292.1|3160773_3162162_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX62293.1|3163760_3164744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63298.1|3164940_3165957_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	3230415	3303577	4102613	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZX62346.1|3230415_3231366_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62347.1|3231362_3232382_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX62348.1|3232391_3235100_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX62349.1|3235247_3235904_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX62350.1|3236002_3236953_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62351.1|3237058_3237994_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX62352.1|3238193_3239888_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX62353.1|3239922_3240849_+	VOC family protein	NA	NA	NA	NA	NA
AZX63302.1|3240917_3242015_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62354.1|3242033_3242897_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX62355.1|3242908_3243691_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX62356.1|3243687_3244806_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX62357.1|3244802_3246335_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX62358.1|3246375_3247383_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX62359.1|3247527_3248250_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62360.1|3248265_3249288_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX62361.1|3249604_3250339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62362.1|3250423_3252169_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX62363.1|3252165_3252918_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX62364.1|3252962_3253919_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62365.1|3254007_3254574_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62366.1|3254581_3255442_-	aminotransferase	NA	NA	NA	NA	NA
AZX62367.1|3255471_3256215_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX62368.1|3256231_3256915_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX62369.1|3257752_3258667_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX62370.1|3258731_3259640_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62371.1|3259730_3261155_-	protein CyaE	NA	NA	NA	NA	NA
AZX62372.1|3261156_3262479_-	protein CyaD	NA	NA	NA	NA	NA
AZX62373.1|3262475_3264614_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX62374.1|3264691_3269812_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX63303.1|3269998_3270178_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62375.1|3270260_3270848_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX62376.1|3270863_3272345_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX62377.1|3272399_3274253_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62378.1|3274515_3275853_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX62379.1|3275887_3277885_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX62380.1|3277902_3279951_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX62381.1|3280081_3280948_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62382.1|3281216_3282182_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX62383.1|3282296_3283445_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX62384.1|3283869_3284181_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX62385.1|3284214_3284475_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX62386.1|3284624_3285758_+	GTPase ObgE	NA	NA	NA	NA	NA
AZX62387.1|3285828_3286965_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX62388.1|3287130_3287925_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX62389.1|3287987_3288431_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX62390.1|3288546_3289497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62391.1|3289483_3289672_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62392.1|3289619_3290027_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX62393.1|3290099_3292295_+	DNA methylase	NA	NA	NA	NA	NA
AZX62394.1|3292516_3293467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62395.1|3293426_3293951_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX62396.1|3294082_3295054_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63304.1|3295173_3297618_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX62397.1|3297633_3298224_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX62398.1|3298467_3299418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62399.1|3299575_3300841_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX62400.1|3300874_3301972_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX62401.1|3302626_3303577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	3314864	3416026	4102613	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
AZX62412.1|3314864_3315815_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62413.1|3316546_3316924_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZX62414.1|3316908_3317610_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62415.1|3317753_3318446_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZX62416.1|3318445_3319549_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZX62417.1|3319658_3322031_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZX62418.1|3322027_3323587_+	chaperone SurA	NA	NA	NA	NA	NA
AZX62419.1|3323611_3324409_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZX62420.1|3324440_3325586_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZX62421.1|3325690_3327133_+	pyruvate kinase	NA	NA	NA	NA	NA
AZX63305.1|3327135_3328224_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62422.1|3330502_3331453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62423.1|3331439_3331658_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62424.1|3332582_3333140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62425.1|3333115_3333466_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62426.1|3333634_3334429_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX62427.1|3334425_3335475_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX62428.1|3335474_3336164_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX62429.1|3336250_3336748_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX62430.1|3336779_3338096_-	protein TolB	NA	NA	NA	NA	NA
AZX62431.1|3338112_3339087_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX62432.1|3339123_3339582_-	protein TolR	NA	NA	NA	NA	NA
AZX62433.1|3339581_3340262_-	protein TolQ	NA	NA	NA	NA	NA
AZX62434.1|3340264_3340693_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX62435.1|3340745_3342476_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX62436.1|3342541_3343114_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX62437.1|3343094_3343781_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX62438.1|3344136_3344808_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX62439.1|3344814_3345015_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62440.1|3345357_3345639_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62441.1|3345635_3346169_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX62442.1|3346150_3346702_-	lysozyme	NA	NA	NA	NA	NA
AZX62443.1|3346680_3346923_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62444.1|3346927_3347740_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62445.1|3347739_3348003_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62446.1|3348221_3348638_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62447.1|3348642_3352599_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX62448.1|3352591_3352981_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX62449.1|3352977_3353511_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX62450.1|3353578_3353938_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62451.1|3353947_3356560_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX62452.1|3356585_3356876_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX62453.1|3356893_3357223_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX62454.1|3357232_3357751_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX62455.1|3358005_3358506_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX62456.1|3358513_3358936_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62457.1|3358932_3359331_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX62458.1|3359327_3359723_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX62459.1|3359722_3359923_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62460.1|3359924_3360407_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX62461.1|3360469_3360721_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62462.1|3360730_3361378_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX62463.1|3361395_3362346_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62464.1|3362774_3363377_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX62465.1|3363499_3363742_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX63306.1|3363747_3364803_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX62466.1|3364831_3366250_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX62467.1|3366252_3367530_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX62468.1|3367516_3367966_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX62469.1|3368641_3369592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62470.1|3369609_3369831_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62471.1|3369845_3370544_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62472.1|3370536_3370857_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63307.1|3371336_3371948_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX62473.1|3372013_3372226_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62474.1|3372477_3373428_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62475.1|3373526_3374600_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62476.1|3374767_3375562_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX62477.1|3375601_3376126_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX62478.1|3376118_3377861_-	sulfite reductase	NA	NA	NA	NA	NA
AZX62479.1|3378070_3378829_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX62480.1|3378831_3379539_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX62481.1|3379555_3380437_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX62482.1|3380447_3381206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63308.1|3381174_3381930_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62483.1|3381999_3383418_+	amidase	NA	NA	NA	NA	NA
AZX62484.1|3383439_3384090_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZX62485.1|3384223_3384559_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX62486.1|3384647_3385598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62487.1|3385674_3387495_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX62488.1|3387499_3388573_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX62489.1|3388695_3389664_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX62490.1|3389737_3390649_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX62491.1|3390667_3391240_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX62492.1|3391320_3391869_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX62493.1|3391868_3393458_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX62494.1|3393527_3393767_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX62495.1|3393807_3394839_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX62496.1|3394898_3396080_-	monooxygenase	NA	NA	NA	NA	NA
AZX62497.1|3396176_3396629_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62498.1|3396638_3397979_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX62499.1|3398295_3399333_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62500.1|3399714_3400074_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63309.1|3400157_3401099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62501.1|3401173_3402124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62502.1|3402417_3403512_+	porin	NA	NA	NA	NA	NA
AZX62503.1|3403593_3404475_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX62504.1|3404496_3405336_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX62505.1|3405411_3406929_+	peptidase	NA	NA	NA	NA	NA
AZX62506.1|3407025_3408126_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX62507.1|3408142_3408565_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX62508.1|3408587_3408800_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX62509.1|3408846_3409767_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX63310.1|3410030_3410699_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX62510.1|3410701_3411031_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX62511.1|3411237_3412671_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX62512.1|3412682_3413066_-	thioredoxin	NA	NA	NA	NA	NA
AZX62513.1|3413127_3413928_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62514.1|3414026_3414977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62515.1|3415075_3416026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	3702642	3835568	4102613	tRNA,integrase,transposase	uncultured_Mediterranean_phage(10.34%)	118	3747285:3747302	3791925:3791942
AZX62764.1|3702642_3703593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62765.1|3703589_3704225_-	transporter	NA	NA	NA	NA	NA
AZX62766.1|3704354_3705254_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZX62767.1|3705349_3705841_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZX62768.1|3705887_3706853_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62769.1|3707986_3709228_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZX62770.1|3709341_3710358_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZX62771.1|3710392_3710869_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62772.1|3711011_3711920_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX62773.1|3712033_3713146_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZX62774.1|3713246_3713780_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX62775.1|3713868_3715119_+	kynureninase	NA	NA	NA	NA	NA
AZX62776.1|3715220_3715733_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZX62777.1|3715638_3715845_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62778.1|3715831_3716782_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62779.1|3716847_3717786_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZX62780.1|3717808_3718435_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZX62781.1|3718431_3719088_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZX62782.1|3719084_3719687_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62783.1|3719693_3720320_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZX62784.1|3720461_3721031_+	bacterioferritin	NA	NA	NA	NA	NA
AZX62785.1|3721101_3722421_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZX62786.1|3722527_3722719_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX62787.1|3722970_3724260_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX62788.1|3724414_3725410_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62789.1|3725494_3726169_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62790.1|3726165_3727116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62791.1|3727102_3727285_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62792.1|3727277_3728519_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZX62793.1|3728515_3729460_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZX62794.1|3729578_3730529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62795.1|3730488_3731418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62796.1|3731471_3731807_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZX62797.1|3731851_3732616_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX62798.1|3732639_3733380_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62799.1|3733387_3734962_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZX62800.1|3734975_3735953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62801.1|3736225_3736825_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZX62802.1|3736858_3743761_-	autotransporter BatB	NA	NA	NA	NA	NA
AZX62803.1|3744207_3744339_-	entericidin	NA	NA	NA	NA	NA
AZX62804.1|3744370_3744532_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62805.1|3744604_3744811_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZX62806.1|3745815_3746475_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZX62807.1|3746502_3747648_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747285:3747302	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX62808.1|3747788_3748124_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZX62809.1|3748198_3749059_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZX62810.1|3749322_3750024_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX62811.1|3750193_3750589_+	RidA family protein	NA	NA	NA	NA	NA
AZX62812.1|3750698_3751649_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62813.1|3751659_3752301_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62814.1|3752467_3752710_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62815.1|3752808_3753759_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62816.1|3753794_3754262_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZX62817.1|3754495_3754873_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62818.1|3754869_3755052_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62819.1|3755055_3756042_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZX62820.1|3756038_3756686_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZX62821.1|3756743_3757271_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62822.1|3757304_3758492_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZX62823.1|3758481_3758844_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZX62824.1|3758836_3758956_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62825.1|3758956_3759157_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX62826.1|3759153_3760143_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZX62827.1|3761629_3763600_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZX62828.1|3763841_3764240_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62829.1|3764248_3765172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62830.1|3765629_3766580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62831.1|3766810_3768502_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX62832.1|3768550_3768823_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX62833.1|3768819_3769191_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX62834.1|3769286_3769421_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX62835.1|3769826_3771236_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX62836.1|3771232_3772348_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX62837.1|3772442_3774896_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX62838.1|3775014_3775806_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62839.1|3775925_3777353_+	amidase	NA	NA	NA	NA	NA
AZX63321.1|3777391_3778363_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62840.1|3778781_3779945_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX62841.1|3780032_3780878_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX62842.1|3782434_3783385_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62843.1|3783939_3784314_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX62844.1|3784388_3785447_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX62845.1|3785470_3786421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62846.1|3789302_3790472_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX63322.1|3790572_3792180_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3791925:3791942	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX62847.1|3792226_3794248_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX62848.1|3794276_3794522_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX62849.1|3794535_3795726_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX62850.1|3795921_3796887_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX62851.1|3796909_3798049_-	alanine racemase	NA	NA	NA	NA	NA
AZX62852.1|3798260_3799223_+	immunogenic protein	NA	NA	NA	NA	NA
AZX62853.1|3799346_3801371_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX62854.1|3801567_3803811_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX62855.1|3804089_3804548_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62856.1|3805475_3808097_-	hypothetical protein	NA	NA	NA	NA	NA
AZX62857.1|3808160_3810788_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX62858.1|3810939_3812004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX62859.1|3812000_3812774_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX62860.1|3812782_3813616_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX62861.1|3813628_3814408_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX63323.1|3814442_3815915_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX62862.1|3815942_3816701_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX62863.1|3816756_3818607_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX62864.1|3818700_3819177_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX62865.1|3819193_3820114_-	bestrophin	NA	NA	NA	NA	NA
AZX62866.1|3820220_3820721_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZX62867.1|3821094_3821787_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX62868.1|3822095_3823046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX62869.1|3823042_3826816_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZX62870.1|3827152_3829042_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZX62871.1|3829053_3829947_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZX62872.1|3829972_3830848_+	thiazole synthase	NA	NA	NA	NA	NA
AZX62873.1|3830844_3831696_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX62874.1|3831757_3832438_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZX62875.1|3832441_3832801_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62876.1|3832801_3833761_+	hypothetical protein	NA	NA	NA	NA	NA
AZX62877.1|3833781_3834270_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZX63324.1|3834551_3835568_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025369	Bordetella pertussis strain I223 chromosome, complete genome	4102613	4001681	4066593	4102613	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX63042.1|4001681_4002167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63043.1|4002385_4003366_+	protein BugT	NA	NA	NA	NA	NA
AZX63044.1|4003632_4004442_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX63045.1|4004481_4005162_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX63046.1|4005155_4005614_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX63047.1|4005625_4005988_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX63048.1|4006070_4006754_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX63049.1|4006809_4007118_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX63050.1|4007136_4007451_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX63051.1|4007447_4009922_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX63052.1|4009929_4011321_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX63053.1|4011317_4011503_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX63054.1|4011481_4012183_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX63055.1|4012179_4013001_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX63333.1|4012981_4014106_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX63056.1|4014098_4015118_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX63057.1|4015323_4016358_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX63334.1|4016458_4017250_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX63058.1|4017332_4017707_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX63059.1|4017684_4019094_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX63060.1|4019086_4020469_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX63061.1|4020803_4022408_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX63062.1|4022443_4023457_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX63063.1|4023467_4024394_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX63064.1|4024784_4025735_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AZX63065.1|4025904_4027131_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX63066.1|4027330_4028197_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX63067.1|4028189_4029152_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX63068.1|4029252_4030203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63069.1|4030301_4031252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63070.1|4031350_4032301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX63071.1|4032297_4033791_-	RND transporter	NA	NA	NA	NA	NA
AZX63072.1|4033787_4036895_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX63073.1|4036891_4039960_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX63074.1|4039956_4041207_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX63075.1|4041387_4042149_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX63076.1|4042181_4042832_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX63077.1|4042834_4043674_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX63078.1|4043914_4044658_+	hypothetical protein	NA	NA	NA	NA	NA
AZX63079.1|4044740_4045088_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX63080.1|4045185_4046028_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX63081.1|4046072_4046960_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX63082.1|4046986_4047175_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX63083.1|4047272_4048730_+	MFS transporter	NA	NA	NA	NA	NA
AZX63084.1|4048716_4050243_+	glycerol kinase	NA	NA	NA	NA	NA
AZX63085.1|4050261_4050729_-	hypothetical protein	NA	NA	NA	NA	NA
AZX63086.1|4050728_4051751_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX63087.1|4051871_4052612_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX63088.1|4052666_4053767_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63089.1|4053768_4054959_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX63090.1|4055078_4056095_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX63091.1|4056413_4057085_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX63092.1|4057081_4057990_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX63093.1|4058201_4058849_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX63094.1|4062700_4063777_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX63095.1|4063787_4064597_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX63096.1|4064686_4065460_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX63097.1|4065642_4066593_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
