The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	0	122073	4106374	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZX81301.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX81302.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX81303.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX81304.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX81305.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX81306.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX81307.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX81308.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX81309.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX81310.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX81311.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX81312.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX81313.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX81314.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX84686.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX81315.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81316.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX81317.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX81318.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81319.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX81320.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81321.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX81322.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX84687.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81323.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX81324.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX81325.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81326.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX81327.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX81328.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX81329.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX81330.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX81331.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX81332.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX81333.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX81334.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX81335.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81336.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81337.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX81338.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81339.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX81340.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX81341.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81342.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX81343.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX81344.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX81345.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81346.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81347.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81348.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81349.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX81350.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX81351.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81352.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81353.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX81354.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX81355.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX81356.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX81357.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81358.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81359.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX81360.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX81361.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX81362.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX81363.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84688.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81364.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX81365.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84689.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81366.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX81367.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX81368.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX81369.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX81370.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX81371.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX81372.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX81373.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX81374.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX81375.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX81376.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX81377.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX81378.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81379.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX81380.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX81381.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX81382.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX81383.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81384.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX81385.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX81386.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX81387.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX81388.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX81389.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX81390.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX81391.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX81392.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX81393.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81394.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX81395.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX81396.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX81397.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX84690.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX81398.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84691.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX81399.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX81400.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX81401.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81402.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX81403.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX81404.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	164893	225404	4106374	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX81436.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81437.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81438.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZX81439.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX81440.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX81441.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX81442.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84696.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZX81443.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81444.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZX81445.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZX81446.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX81447.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX81448.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81449.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX81450.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX81451.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX81452.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX81453.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZX81454.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX84697.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX81455.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81456.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX81457.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX81458.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81459.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX81460.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX81461.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX81462.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX81463.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX81464.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81465.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZX81466.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81467.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81468.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX81469.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZX81470.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX81471.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZX81472.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX81473.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX81474.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX84698.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81475.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX81476.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX81477.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX81478.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX81479.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX81480.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX81481.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX81482.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX81483.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	233336	286924	4106374	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZX81491.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81492.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81493.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81494.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX81495.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZX81496.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81497.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81498.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81499.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81500.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZX81501.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZX81502.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZX81503.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZX81504.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZX81505.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZX81506.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZX81507.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84699.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZX81508.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZX81509.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZX81510.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZX81511.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZX81512.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81513.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX81514.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZX81515.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81516.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81517.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81518.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX81519.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX81520.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX81521.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX81522.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX81523.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX81524.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX81525.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81526.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81527.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX81528.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81529.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX81530.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX81531.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZX81532.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZX81533.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX81534.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX81535.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX84700.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX81536.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	390857	448366	4106374	transposase	Orpheovirus(14.29%)	50	NA	NA
AZX81635.1|390857_391808_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81636.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
AZX81637.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZX81638.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
AZX81639.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81640.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
AZX81641.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81642.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84706.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZX81643.1|401157_402141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81644.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81645.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX81646.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
AZX81647.1|404930_406637_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX81648.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81649.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
AZX81650.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81651.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84707.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81652.1|412386_413337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81653.1|413425_414340_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX81654.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
AZX81655.1|415085_416009_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX81656.1|416014_416470_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81657.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX84708.1|417489_417798_+	GtrA family protein	NA	NA	NA	NA	NA
AZX81658.1|417757_419377_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX81659.1|419373_420432_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX81660.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX81661.1|421148_422126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81662.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX81663.1|423523_425035_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84709.1|425050_426364_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX81664.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81665.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX81666.1|430322_431273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81667.1|431404_431803_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZX81668.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
AZX81669.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZX81670.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX81671.1|436405_436924_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZX81672.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZX81673.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
AZX81674.1|439210_439996_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX81675.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81676.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81677.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX81678.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX81679.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX81680.1|447415_448366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	619753	720217	4106374	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX81831.1|619753_620704_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81832.1|621402_621786_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81833.1|621843_622446_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX84715.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
AZX81834.1|622998_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81835.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX81836.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
AZX81837.1|626039_627089_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX81838.1|627236_627815_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX81839.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX81840.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX81841.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81842.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX81843.1|635742_636693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81844.1|636791_637592_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81845.1|637653_638037_+	thioredoxin	NA	NA	NA	NA	NA
AZX81846.1|638048_639482_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX81847.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX84716.1|640020_640689_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81848.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX81849.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX81850.1|642154_642577_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX81851.1|642593_643694_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX81852.1|643790_645308_-	peptidase	NA	NA	NA	NA	NA
AZX81853.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX81854.1|646244_647126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX81855.1|647207_648302_-	porin	NA	NA	NA	NA	NA
AZX81856.1|648595_649546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84717.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81857.1|650645_651005_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81858.1|651386_652424_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81859.1|652740_654081_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX81860.1|654090_654543_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81861.1|654639_655821_+	monooxygenase	NA	NA	NA	NA	NA
AZX81862.1|655880_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX81863.1|656952_657192_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX81864.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX81865.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX81866.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX81867.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX81868.1|661055_662024_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX81869.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX81870.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX81871.1|665121_666072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81872.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX81873.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX81874.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
AZX81875.1|668789_669545_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84718.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81876.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81877.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX81878.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX81879.1|672858_674601_+	sulfite reductase	NA	NA	NA	NA	NA
AZX81880.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX81881.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81882.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81883.1|677291_678242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81884.1|678493_678706_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84719.1|678771_679383_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX81885.1|679862_680183_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81886.1|680175_680874_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81887.1|680888_681110_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81888.1|681127_682078_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84720.1|682753_683203_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX81889.1|683189_684467_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX81890.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX84721.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX81891.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX81892.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX81893.1|688373_689324_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81894.1|689341_689989_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX81895.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81896.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX81897.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81898.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX81899.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX81900.1|691783_692206_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81901.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX81902.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX81903.1|693496_693826_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX81904.1|693843_694134_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX81905.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX81906.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81907.1|697208_697742_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX81908.1|697738_698128_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX81909.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX81910.1|702081_702498_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81911.1|702716_702980_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX81912.1|702979_703792_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81913.1|703796_704039_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81914.1|704017_704569_+	lysozyme	NA	NA	NA	NA	NA
AZX81915.1|704550_705084_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX81916.1|705080_705362_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81917.1|705704_705905_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81918.1|705911_706583_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX81919.1|706938_707625_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX81920.1|707605_708178_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX81921.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX81922.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX81923.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
AZX81924.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
AZX81925.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX81926.1|712623_713940_+	protein TolB	NA	NA	NA	NA	NA
AZX81927.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX81928.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX81929.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX81930.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX81931.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81932.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81933.1|719061_719280_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81934.1|719266_720217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	747142	820304	4106374	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX81955.1|747142_748093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81956.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX81957.1|749878_751144_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX81958.1|751301_752252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81959.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX84723.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX81960.1|755665_756637_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81961.1|756768_757293_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX81962.1|757252_758203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81963.1|758424_760620_-	DNA methylase	NA	NA	NA	NA	NA
AZX81964.1|760692_761100_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX81965.1|761222_762173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX81966.1|762288_762732_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX81967.1|762794_763589_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX81968.1|763754_764891_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX81969.1|764961_766095_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX81970.1|766244_766505_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX81971.1|766538_766850_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX81972.1|767274_768423_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX81973.1|768537_769503_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX81974.1|769771_770638_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81975.1|770768_772817_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX81976.1|772834_774832_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX81977.1|774866_776204_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX81978.1|776466_778320_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81979.1|778374_779856_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX81980.1|779871_780459_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX84724.1|780541_780721_+	hypothetical protein	NA	NA	NA	NA	NA
AZX81981.1|780907_786028_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX81982.1|786105_788244_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX81983.1|788240_789563_+	protein CyaD	NA	NA	NA	NA	NA
AZX81984.1|789564_790989_+	protein CyaE	NA	NA	NA	NA	NA
AZX81985.1|791079_791988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81986.1|792052_792967_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX81987.1|793804_794488_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX81988.1|794504_795248_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX81989.1|795277_796138_+	aminotransferase	NA	NA	NA	NA	NA
AZX81990.1|796145_796712_-	hypothetical protein	NA	NA	NA	NA	NA
AZX81991.1|796800_797757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX81992.1|797801_798554_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX81993.1|798550_800296_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX81994.1|800380_801115_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81995.1|801431_802454_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX81996.1|802469_803192_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX81997.1|803336_804344_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX81998.1|804384_805917_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX81999.1|805913_807032_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX82000.1|807028_807811_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX82001.1|807822_808686_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX84725.1|808704_809802_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82002.1|809870_810797_-	VOC family protein	NA	NA	NA	NA	NA
AZX82003.1|810831_812526_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX82004.1|812725_813661_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX82005.1|813766_814717_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82006.1|814815_815472_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX82007.1|815619_818328_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX82008.1|818337_819357_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX82009.1|819353_820304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	853051	902315	4106374	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZX82038.1|853051_854002_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84726.1|853974_854574_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82039.1|854575_855010_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX82040.1|855006_855441_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82041.1|855424_856228_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX82042.1|856244_857060_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX82043.1|857056_857872_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX82044.1|858018_858720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82045.1|858747_860706_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX82046.1|860788_861739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82047.1|861959_862628_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX82048.1|862751_863858_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX82049.1|863870_866984_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX82050.1|866980_868474_+	RND transporter	NA	NA	NA	NA	NA
AZX82051.1|868488_869160_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX82052.1|869203_869698_-	azurin	NA	NA	NA	NA	NA
AZX82053.1|869838_870486_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX84727.1|870589_872638_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX82054.1|872634_874647_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX82055.1|874672_876007_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX82056.1|876115_877108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82057.1|877174_879259_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX82058.1|879283_880255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82059.1|880383_881385_-	peptidase M14	NA	NA	NA	NA	NA
AZX82060.1|881418_882660_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX82061.1|882740_883664_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX82062.1|883741_884566_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX84728.1|884762_885779_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX82063.1|885975_886959_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82064.1|888557_889946_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX82065.1|889976_890966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82066.1|891076_892309_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX82067.1|892590_893391_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82068.1|893413_895645_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX82069.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX82070.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX82071.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX82072.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX82073.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX82074.1|901364_902315_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	911927	976867	4106374	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX82083.1|911927_912878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82084.1|912874_914725_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX82085.1|915105_915765_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX82086.1|915852_916005_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82087.1|916113_916281_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82088.1|916292_916973_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX82089.1|917254_917971_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX82090.1|917985_919287_-	phospholipase	NA	NA	NA	NA	NA
AZX82091.1|921431_924320_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX82092.1|924543_925896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX82093.1|925924_926446_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX82094.1|926442_927897_+	carboxylase	NA	NA	NA	NA	NA
AZX82095.1|927931_928180_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82096.1|928285_929161_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82097.1|929186_930242_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82098.1|930254_931046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82099.1|931078_932449_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX82100.1|933625_934576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82101.1|934628_934850_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82102.1|935009_935222_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82103.1|935341_936460_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX82104.1|936556_936772_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82105.1|936965_937217_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82106.1|937329_938280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82107.1|938276_938660_-	ferredoxin	NA	NA	NA	NA	NA
AZX82108.1|938714_940532_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX84730.1|940678_941506_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX84731.1|941551_942532_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX82109.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82110.1|942737_943919_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX82111.1|944082_944817_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX82112.1|944818_947431_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX82113.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX82114.1|950095_950506_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX82115.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX82116.1|951787_952738_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82117.1|952734_953709_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82118.1|953833_954745_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX84732.1|955021_955414_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX82119.1|955543_956494_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82120.1|956523_956706_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX82121.1|956744_957002_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82122.1|957478_958660_-	MFS transporter	NA	NA	NA	NA	NA
AZX82123.1|958875_959553_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX82124.1|959549_960323_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX82125.1|960400_960982_-	OmpA family protein	NA	NA	NA	NA	NA
AZX82126.1|961352_964034_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX82127.1|964033_965167_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX82128.1|965159_966245_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX82129.1|966331_967231_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX82130.1|967227_968556_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX82131.1|968570_969242_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX82132.1|969414_971145_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX82133.1|971146_971506_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX82134.1|971697_972012_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX82135.1|972054_973275_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX82136.1|973271_974213_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX82137.1|974209_975199_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX82138.1|975233_975818_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX82139.1|975916_976867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	996267	1059418	4106374	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX82154.1|996267_997218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82155.1|997322_998372_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX84734.1|998509_999526_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX82156.1|1001034_1001607_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX82157.1|1001666_1002398_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX84735.1|1002449_1003367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82158.1|1004174_1007354_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX82159.1|1007350_1008733_+	multidrug transporter	NA	NA	NA	NA	NA
AZX82160.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX82161.1|1009199_1009850_-	SCO family protein	NA	NA	NA	NA	NA
AZX82162.1|1010000_1012115_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX82163.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX82164.1|1013038_1013665_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX82165.1|1013661_1015416_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX82166.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX82167.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX82168.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX82169.1|1022112_1023288_-	flagellin FliC	NA	NA	NA	NA	NA
AZX82170.1|1023330_1024281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82171.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX82172.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
AZX82173.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX82174.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX82175.1|1029719_1030493_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX82176.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
AZX82177.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX84736.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX82178.1|1035143_1035851_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX82179.1|1035888_1037022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82180.1|1037298_1037847_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX82181.1|1037865_1038351_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX82182.1|1038528_1039467_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX82183.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82184.1|1039832_1040777_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82185.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX82186.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82187.1|1043493_1044354_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX82188.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82189.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX82190.1|1045232_1046183_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82191.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX82192.1|1047654_1047978_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX82193.1|1048012_1048573_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX82194.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX82195.1|1049581_1050529_+	motility protein MotB	NA	NA	NA	NA	NA
AZX82196.1|1050630_1050924_+	response regulator	NA	NA	NA	NA	NA
AZX82197.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX82198.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX82199.1|1053596_1055303_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX82200.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX82201.1|1057271_1057661_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX82202.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX84737.1|1058401_1059418_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1065402	1125465	4106374	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AZX82207.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX84739.1|1067767_1068784_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX82208.1|1069116_1070052_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX82209.1|1070101_1071982_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX82210.1|1072048_1072393_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX82211.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX82212.1|1073670_1074744_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX82213.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX84740.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX84741.1|1077405_1078422_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX82214.1|1080298_1080478_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84742.1|1080464_1081415_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84743.1|1082617_1084039_-	siroheme synthase	NA	NA	NA	NA	NA
AZX82215.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82216.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX82217.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX82218.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82219.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX82220.1|1087906_1088737_+	transglycosylase	NA	NA	NA	NA	NA
AZX82221.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX82222.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82223.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX82224.1|1094452_1094917_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX82225.1|1094943_1095894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84744.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX82226.1|1097082_1097940_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX82227.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX82228.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX82229.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX82230.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX82231.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX82232.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX82233.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX82234.1|1107619_1109506_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX82235.1|1109743_1110376_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX82236.1|1110394_1110997_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82237.1|1111148_1112099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82238.1|1112901_1113702_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82239.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
AZX82240.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX82241.1|1115881_1116832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82242.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX82243.1|1117439_1118753_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82244.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX82245.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX82246.1|1120694_1121471_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX82247.1|1121452_1124332_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX82248.1|1124514_1125465_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1156531	1235154	4106374	transposase,tRNA	Erysipelothrix_phage(20.0%)	56	NA	NA
AZX82270.1|1156531_1157482_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZX82271.1|1157580_1158213_-	fimbrial protein	NA	NA	NA	NA	NA
AZX82272.1|1158377_1160660_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX82273.1|1160814_1163511_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZX82274.1|1163636_1164125_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX82275.1|1166535_1169406_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZX82276.1|1169451_1170666_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZX82277.1|1170895_1172323_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZX82278.1|1172363_1173512_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZX82279.1|1173524_1174283_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX82280.1|1174370_1175273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82281.1|1175269_1176220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82282.1|1176349_1177333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82283.1|1177387_1178110_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX82284.1|1179588_1180944_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZX82285.1|1181024_1183400_-	protein tex	NA	NA	NA	NA	NA
AZX82286.1|1183564_1185640_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZX82287.1|1185701_1186502_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZX82288.1|1186603_1187566_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZX82289.1|1187553_1188309_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZX82290.1|1188416_1190054_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZX82291.1|1190121_1190859_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX82292.1|1190961_1191537_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZX82293.1|1191709_1192246_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82294.1|1192248_1192593_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZX82295.1|1192608_1193454_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZX82296.1|1193492_1194872_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZX82297.1|1194949_1195831_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX82298.1|1195929_1196880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82299.1|1196876_1197287_-	VOC family protein	NA	NA	NA	NA	NA
AZX82300.1|1197394_1198249_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZX82301.1|1198241_1199204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82302.1|1199249_1200374_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZX84746.1|1200485_1201358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82303.1|1201482_1202262_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX82304.1|1202415_1203837_+	MFS transporter	NA	NA	NA	NA	NA
AZX82305.1|1204271_1205969_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZX82306.1|1205997_1206120_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84747.1|1206195_1207137_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZX82307.1|1207463_1208210_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82308.1|1208217_1209144_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82309.1|1209265_1210183_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX82310.1|1210222_1211176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX82311.1|1211200_1211779_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZX82312.1|1213452_1214061_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82313.1|1214138_1214492_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82314.1|1214575_1215565_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX82315.1|1215767_1216718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82316.1|1216804_1217755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82317.1|1218687_1219038_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82318.1|1218961_1219990_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX82319.1|1220069_1221368_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX82320.1|1221364_1221946_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX82321.1|1222258_1226305_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX82322.1|1226545_1234207_+	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX82323.1|1234203_1235154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1269629	1326840	4106374	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZX82354.1|1269629_1270580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82355.1|1274326_1274938_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZX82356.1|1275160_1276621_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZX82357.1|1276717_1278310_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZX82358.1|1278296_1278575_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82359.1|1278633_1278921_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX82360.1|1278922_1280263_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX82361.1|1280358_1281048_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82362.1|1281060_1282491_+	MFS transporter	NA	NA	NA	NA	NA
AZX82363.1|1284215_1285037_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82364.1|1285047_1286619_+	amidohydrolase	NA	NA	NA	NA	NA
AZX82365.1|1286647_1287625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX82366.1|1287651_1288455_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZX82367.1|1288451_1289246_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX82368.1|1289253_1290489_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX82369.1|1290481_1290916_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX82370.1|1291665_1292616_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82371.1|1293237_1294965_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZX82372.1|1295076_1296435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX82373.1|1296555_1296741_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82374.1|1296727_1297678_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82375.1|1297718_1298789_+	FUSC family protein	NA	NA	NA	NA	NA
AZX82376.1|1298811_1299690_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX82377.1|1299861_1300833_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX82378.1|1300995_1301838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82379.1|1301999_1302680_+	anti-sigma factor	NA	NA	NA	NA	NA
AZX82380.1|1302673_1303843_+	amine oxidase	NA	NA	NA	NA	NA
AZX82381.1|1303839_1304871_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX82382.1|1304914_1306156_+	MFS transporter	NA	NA	NA	NA	NA
AZX82383.1|1306190_1307723_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX82384.1|1307803_1308427_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX82385.1|1308457_1309069_+	LysE family translocator	NA	NA	NA	NA	NA
AZX82386.1|1309104_1309575_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX82387.1|1310006_1311011_+	peptidase M20	NA	NA	NA	NA	NA
AZX82388.1|1311047_1312562_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX82389.1|1312565_1313525_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX82390.1|1313553_1314357_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX82391.1|1314358_1315993_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX82392.1|1316076_1317138_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX82393.1|1317336_1317606_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82394.1|1317609_1318134_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX82395.1|1318549_1319500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82396.1|1319496_1320567_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX82397.1|1320639_1321278_+	DedA family protein	NA	NA	NA	NA	NA
AZX82398.1|1321572_1321800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX82399.1|1321922_1322636_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX82400.1|1322880_1323831_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82401.1|1323934_1324216_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82402.1|1324330_1325779_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX82403.1|1325889_1326840_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1417073	1481289	4106374	protease,transposase,tRNA	Salmonella_phage(16.67%)	60	NA	NA
AZX82485.1|1417073_1418024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82486.1|1418190_1418544_+	cytochrome C	NA	NA	NA	NA	NA
AZX82487.1|1418556_1418919_+	cytochrome	NA	NA	NA	NA	NA
AZX82488.1|1418960_1419386_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZX82489.1|1419588_1420845_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZX82490.1|1421043_1422024_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82491.1|1422173_1423415_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82492.1|1423513_1424464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82493.1|1424472_1425168_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZX82494.1|1427989_1428589_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZX82495.1|1428599_1430765_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZX82496.1|1430788_1432573_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZX82497.1|1432572_1432662_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZX82498.1|1433356_1433629_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZX82499.1|1433628_1435695_+	cation acetate symporter	NA	NA	NA	NA	NA
AZX82500.1|1435691_1436642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82501.1|1436740_1437691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82502.1|1437806_1438139_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZX82503.1|1438135_1438822_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZX82504.1|1438808_1439768_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZX84756.1|1439809_1442170_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZX82505.1|1442169_1442802_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZX82506.1|1442864_1444244_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZX82507.1|1444290_1445646_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZX82508.1|1445924_1446173_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82509.1|1446360_1446678_-	virulence factor	NA	NA	NA	NA	NA
AZX82510.1|1446950_1447466_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZX82511.1|1447559_1447721_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82512.1|1447736_1448492_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX82513.1|1448830_1449037_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82514.1|1449044_1449704_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZX82515.1|1449998_1452203_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX82516.1|1452313_1453537_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZX82517.1|1453659_1454634_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX82518.1|1454701_1455895_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZX82519.1|1455909_1456710_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZX82520.1|1456706_1458563_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZX82521.1|1458559_1459165_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX82522.1|1459183_1460569_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZX82523.1|1461294_1462521_+	transporter	NA	NA	NA	NA	NA
AZX82524.1|1462609_1463392_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX82525.1|1463490_1464441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82526.1|1464467_1465241_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZX82527.1|1465252_1466494_+	MFS transporter	NA	NA	NA	NA	NA
AZX82528.1|1468310_1469138_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZX82529.1|1469139_1469850_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX82530.1|1469846_1470446_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZX84757.1|1470554_1471148_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZX82531.1|1471199_1471382_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZX82532.1|1471438_1472497_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZX82533.1|1472496_1473483_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZX82534.1|1473564_1474500_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZX82535.1|1474501_1475254_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZX84758.1|1475436_1475676_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZX82536.1|1475865_1477095_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZX82537.1|1477096_1477597_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82538.1|1477593_1478193_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZX82539.1|1478205_1478706_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82540.1|1478702_1479764_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AZX82541.1|1479801_1481289_+|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1663756	1722748	4106374	transposase	Enterobacteria_phage(33.33%)	58	NA	NA
AZX82687.1|1663756_1664707_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82688.1|1664703_1666026_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX82689.1|1666126_1666444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82690.1|1666577_1667891_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZX82691.1|1667921_1669559_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZX82692.1|1670182_1670659_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZX82693.1|1670960_1671911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82694.1|1672254_1672710_+	Tir chaperone family protein	NA	NA	NA	NA	NA
AZX82695.1|1672745_1673012_-	type III secretion protein	NA	NA	NA	NA	NA
AZX82696.1|1673001_1673301_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82697.1|1673341_1674622_-	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZX84763.1|1674618_1676718_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX82698.1|1676714_1677083_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82699.1|1677079_1677490_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82700.1|1677494_1677872_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZX82701.1|1677868_1678966_-	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZX82702.1|1679129_1679747_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82703.1|1679768_1680044_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82704.1|1680059_1680545_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZX82705.1|1680592_1681534_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82706.1|1681563_1682766_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82707.1|1682789_1683251_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZX82708.1|1683255_1683777_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82709.1|1683773_1684181_+	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZX82710.1|1684177_1685002_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZX82711.1|1684994_1685657_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82712.1|1685626_1686265_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZX82713.1|1686269_1687604_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZX82714.1|1687603_1688113_+	type III secretion protein	NA	NA	NA	NA	NA
AZX82715.1|1688109_1688658_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84764.1|1688654_1689734_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZX82716.1|1689730_1690402_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX82717.1|1690398_1690674_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX82718.1|1690685_1691486_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZX82719.1|1691482_1692532_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZX82720.1|1692528_1692927_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82721.1|1692917_1694720_+	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZX82722.1|1694740_1695343_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZX84765.1|1695517_1696216_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82723.1|1697779_1698967_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82724.1|1698963_1700985_-	regulator	NA	NA	NA	NA	NA
AZX82725.1|1701069_1703511_+	MFS transporter	NA	NA	NA	NA	NA
AZX82726.1|1703507_1704671_-	alanine racemase	NA	NA	NA	NA	NA
AZX82727.1|1704754_1705183_-	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZX82728.1|1705326_1705677_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZX82729.1|1705673_1707218_-	cardiolipin synthase	NA	NA	NA	NA	NA
AZX84766.1|1707785_1710497_+	autotransporter BapA	NA	NA	NA	NA	NA
AZX82730.1|1710755_1711028_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82731.1|1711024_1711975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82732.1|1712073_1713024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82733.1|1713122_1715723_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX82734.1|1715829_1716834_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX82735.1|1716942_1718283_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX82736.1|1718323_1719352_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82737.1|1719547_1720093_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX82738.1|1720089_1720650_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX82739.1|1720748_1721699_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82740.1|1721797_1722748_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	1726560	1792556	4106374	protease,transposase,tRNA	uncultured_Mediterranean_phage(11.11%)	59	NA	NA
AZX82744.1|1726560_1727601_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX84767.1|1727698_1728715_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX82745.1|1728982_1729630_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX82746.1|1729755_1730514_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX84768.1|1730588_1731278_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX82747.1|1731295_1732180_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX82748.1|1732176_1732956_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX82749.1|1732982_1733660_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84769.1|1733948_1734701_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82750.1|1734819_1736220_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX82751.1|1736243_1736642_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX82752.1|1736817_1737018_+	copper chaperone	NA	NA	NA	NA	NA
AZX82753.1|1737156_1737885_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX82754.1|1738018_1739434_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX82755.1|1739437_1740301_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX82756.1|1740313_1741063_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX82757.1|1741245_1743261_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX84770.1|1743242_1743791_-	arylesterase	NA	NA	NA	NA	NA
AZX82758.1|1743867_1744587_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX82759.1|1744685_1745636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82760.1|1745784_1746123_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX82761.1|1746180_1746342_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX82762.1|1746373_1746574_-	CsbD family protein	NA	NA	NA	NA	NA
AZX82763.1|1746839_1749413_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX82764.1|1749483_1752057_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX82765.1|1754583_1755072_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX82766.1|1755163_1756315_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX82767.1|1756368_1757190_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX82768.1|1757228_1758458_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX82769.1|1758586_1759027_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX82770.1|1758971_1759151_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82771.1|1759137_1760088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82772.1|1760084_1760558_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX82773.1|1760719_1761658_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82774.1|1761659_1762868_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZX82775.1|1762972_1763479_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZX82776.1|1763481_1766343_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX82777.1|1766332_1767298_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX82778.1|1767357_1769352_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX82779.1|1769450_1770401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX82780.1|1770397_1770772_-	hypothetical protein	NA	NA	NA	NA	NA
AZX82781.1|1771033_1772242_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX82782.1|1772238_1774539_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX82783.1|1774591_1777204_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX82784.1|1777563_1779489_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX82785.1|1779485_1780382_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX82786.1|1780388_1781528_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX82787.1|1781527_1782349_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX82788.1|1783919_1784249_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX82789.1|1784631_1785888_+	autotransporter Phg	NA	NA	NA	NA	NA
AZX82790.1|1785962_1786244_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82791.1|1786285_1786606_+	hypothetical protein	NA	NA	NA	NA	NA
AZX82792.1|1786912_1787116_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX82793.1|1787199_1787766_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX82794.1|1788111_1788312_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX82795.1|1788423_1789002_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX82796.1|1789180_1790491_+	trigger factor	NA	NA	NA	NA	NA
AZX82797.1|1790493_1791147_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX82798.1|1791251_1792556_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
>prophage 17
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2216091	2277439	4106374	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZX83130.1|2216091_2217042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83131.1|2217158_2217878_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83132.1|2218050_2219037_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83133.1|2219037_2219520_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX83134.1|2219523_2220807_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX83135.1|2220803_2221742_+	CoA ester lyase	NA	NA	NA	NA	NA
AZX83136.1|2221738_2223448_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX83137.1|2223457_2224705_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX84789.1|2226315_2227605_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX83138.1|2228742_2229516_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX83139.1|2230177_2230921_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83140.1|2230995_2231736_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83141.1|2231931_2232768_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83142.1|2232818_2233589_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX83143.1|2233638_2234691_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX83144.1|2234687_2235314_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX83145.1|2235310_2236357_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX83146.1|2236523_2237540_+	folate-binding protein	NA	NA	NA	NA	NA
AZX84790.1|2237638_2238589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83147.1|2241329_2242619_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX83148.1|2242737_2243208_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX83149.1|2243218_2244427_-	flavohemoprotein	NA	NA	NA	NA	NA
AZX83150.1|2244573_2245038_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX83151.1|2245061_2246012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83152.1|2246996_2247770_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX83153.1|2247766_2248765_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83154.1|2248849_2249626_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX83155.1|2249781_2251449_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX83156.1|2251766_2252891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83157.1|2253017_2253641_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83158.1|2253637_2255539_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX83159.1|2255587_2256382_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX83160.1|2256394_2257396_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX83161.1|2257392_2257899_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX83162.1|2257891_2258740_-	hydrolase	NA	NA	NA	NA	NA
AZX83163.1|2258837_2259380_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83164.1|2259423_2260374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83165.1|2260529_2260856_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZX83166.1|2260852_2261137_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX83167.1|2261133_2261613_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX83168.1|2261609_2263238_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX83169.1|2263234_2263579_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX83170.1|2263578_2266512_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX83171.1|2267670_2268621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83172.1|2268719_2269016_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83173.1|2269122_2270040_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83174.1|2270044_2270758_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX83175.1|2270771_2271743_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83176.1|2273462_2273843_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83177.1|2273846_2275034_+	MFS transporter	NA	NA	NA	NA	NA
AZX84791.1|2275472_2276195_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX83178.1|2276488_2277439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2298230	2369384	4106374	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZX83193.1|2298230_2299181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83194.1|2299733_2301359_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX84796.1|2301408_2302443_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX83195.1|2302445_2303792_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84797.1|2303788_2305303_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX83196.1|2305293_2306304_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83197.1|2306777_2307719_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX83198.1|2307727_2308696_-	AAA family ATPase	NA	NA	NA	NA	NA
AZX83199.1|2310235_2311204_+	transporter	NA	NA	NA	NA	NA
AZX83200.1|2311381_2312371_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83201.1|2312417_2313176_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX83202.1|2313365_2314103_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX83203.1|2314201_2315152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83204.1|2315336_2316119_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX83205.1|2316112_2316814_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX83206.1|2317053_2317656_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83207.1|2318982_2319933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83208.1|2319929_2321486_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZX83209.1|2321478_2322252_-	oxidoreductase	NA	NA	NA	NA	NA
AZX83210.1|2322310_2323261_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83211.1|2323342_2324518_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX83212.1|2324531_2326589_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX83213.1|2326585_2327611_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX83214.1|2327622_2328912_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX83215.1|2328934_2330032_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX83216.1|2330028_2330919_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX83217.1|2330915_2333000_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX83218.1|2333031_2334201_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX83219.1|2334242_2334983_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX83220.1|2334982_2335753_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX83221.1|2336608_2337394_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX83222.1|2337420_2339505_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83223.1|2339672_2341628_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX84798.1|2341951_2342452_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX83224.1|2342550_2344077_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX84799.1|2344214_2345102_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83225.1|2345116_2346070_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX83226.1|2346121_2348212_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZX83227.1|2348227_2348614_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX83228.1|2351307_2352111_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX83229.1|2353404_2354307_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83230.1|2354371_2355148_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX83231.1|2355469_2356519_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83232.1|2356642_2358313_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX83233.1|2358317_2359112_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX83234.1|2359210_2360161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83235.1|2360180_2361086_-	pirin family protein	NA	NA	NA	NA	NA
AZX83236.1|2361163_2361862_-	pirin family protein	NA	NA	NA	NA	NA
AZX83237.1|2362021_2362966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83238.1|2362975_2364466_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX83239.1|2364462_2365530_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX83240.1|2365593_2367006_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX83241.1|2367191_2368412_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX83242.1|2368433_2369384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2410325	2472172	4106374	protease,transposase,tRNA	Planktothrix_phage(14.29%)	60	NA	NA
AZX83281.1|2410325_2411276_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83282.1|2411374_2411983_-	recombination protein RecR	NA	NA	NA	NA	NA
AZX83283.1|2412033_2412360_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX83284.1|2412406_2414632_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX83285.1|2415299_2418704_-	nuclease	NA	NA	NA	NA	NA
AZX83286.1|2418716_2421377_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83287.1|2421580_2422783_-	MFS transporter	NA	NA	NA	NA	NA
AZX83288.1|2423469_2424582_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX83289.1|2424588_2425539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83290.1|2425637_2426039_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX83291.1|2426111_2426690_-|protease	protease	protease	NA	NA	NA	NA
AZX84802.1|2426807_2427296_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX83292.1|2427309_2428242_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX83293.1|2428279_2429167_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX83294.1|2429324_2431019_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX83295.1|2431035_2432292_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX83296.1|2432429_2432975_-	acyl dehydratase	NA	NA	NA	NA	NA
AZX83297.1|2433006_2434566_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX83298.1|2434694_2435447_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX83299.1|2435468_2436161_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX83300.1|2436183_2436975_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83301.1|2437001_2437907_-	agmatinase	NA	NA	NA	NA	NA
AZX83302.1|2438099_2438936_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83303.1|2439027_2440050_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX83304.1|2440186_2441239_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX83305.1|2441243_2442434_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX83306.1|2442436_2442916_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX83307.1|2443101_2443581_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX83308.1|2443588_2443825_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83309.1|2443844_2444246_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX83310.1|2444248_2444500_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX83311.1|2444554_2445436_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX83312.1|2445660_2446107_+	GFA family protein	NA	NA	NA	NA	NA
AZX83313.1|2446191_2447256_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX83314.1|2447392_2447974_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX83315.1|2448208_2449339_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX83316.1|2449516_2450743_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX83317.1|2450801_2451317_+	transporter	NA	NA	NA	NA	NA
AZX83318.1|2451339_2451666_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX83319.1|2451699_2452890_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZX83320.1|2452963_2453368_+	GFA family protein	NA	NA	NA	NA	NA
AZX83321.1|2453584_2454535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83322.1|2454633_2455404_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX83323.1|2455400_2456072_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX83324.1|2456068_2456710_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX83325.1|2456722_2457643_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX83326.1|2457803_2458964_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83327.1|2459005_2459956_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX83328.1|2460554_2460779_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83329.1|2460943_2462638_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX83330.1|2462759_2463029_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX83331.1|2463144_2463543_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX83332.1|2463553_2464510_-	glutathione synthetase	NA	NA	NA	NA	NA
AZX83333.1|2464646_2465192_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX83334.1|2465212_2467162_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX83335.1|2467549_2468326_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX83336.1|2468331_2468724_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83337.1|2469145_2470096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83338.1|2470092_2471190_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX83339.1|2471221_2472172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2476006	2534249	4106374	transposase,tRNA	Planktothrix_phage(28.57%)	52	NA	NA
AZX83342.1|2476006_2476957_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83343.1|2477436_2478093_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZX83344.1|2479776_2480406_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83345.1|2480617_2481712_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83346.1|2481856_2482669_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZX83347.1|2482672_2484376_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZX83348.1|2484426_2485557_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX83349.1|2485743_2486820_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZX84803.1|2486901_2487552_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX83350.1|2487566_2489000_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZX83351.1|2489253_2490072_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83352.1|2490068_2490773_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZX83353.1|2491672_2492788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83354.1|2492821_2493196_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83355.1|2493218_2494376_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZX83356.1|2494388_2494622_-	lipoprotein	NA	NA	NA	NA	NA
AZX83357.1|2495256_2498226_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX83358.1|2498240_2498450_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZX83359.1|2498601_2499231_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83360.1|2499227_2501345_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZX83361.1|2501341_2502022_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZX83362.1|2502018_2502579_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZX83363.1|2502585_2503683_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX83364.1|2503820_2504429_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZX83365.1|2504425_2505718_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX83366.1|2505731_2506274_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZX83367.1|2506283_2507120_-	M48 family peptidase	NA	NA	NA	NA	NA
AZX83368.1|2507153_2508215_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZX83369.1|2508256_2509309_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZX83370.1|2509324_2509627_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83371.1|2509768_2510719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83372.1|2510897_2512592_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX83373.1|2512588_2513674_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZX83374.1|2513721_2514621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83375.1|2514631_2515276_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZX83376.1|2516297_2519540_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZX83377.1|2519550_2520648_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZX83378.1|2520910_2521894_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZX83379.1|2521992_2522943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83380.1|2523041_2523992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83381.1|2524001_2524691_-	VIT family protein	NA	NA	NA	NA	NA
AZX83382.1|2524750_2525188_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX83383.1|2525233_2526127_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX83384.1|2526174_2527347_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX83385.1|2527343_2528498_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX83386.1|2528694_2529045_-	RnfH family protein	NA	NA	NA	NA	NA
AZX83387.1|2529034_2529469_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX83388.1|2529485_2530436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83389.1|2530583_2531051_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX83390.1|2531031_2532189_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX83391.1|2532254_2533181_-	paraslipin	NA	NA	NA	NA	NA
AZX83392.1|2533298_2534249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2576527	2643027	4106374	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZX83431.1|2576527_2577478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83432.1|2577847_2578420_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZX83433.1|2578422_2579433_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZX83434.1|2579425_2579926_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZX83435.1|2579936_2580278_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZX83436.1|2580289_2581081_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZX83437.1|2581097_2581367_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZX83438.1|2581389_2582178_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZX84807.1|2582224_2583241_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX83439.1|2583457_2584900_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZX83440.1|2585078_2586698_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZX83441.1|2586818_2588639_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZX83442.1|2588717_2590250_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZX83443.1|2590283_2591930_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZX83444.1|2591999_2593022_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZX83445.1|2593039_2594173_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZX83446.1|2594175_2594865_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZX83447.1|2594864_2595650_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZX83448.1|2595693_2596458_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZX83449.1|2596496_2597918_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZX83450.1|2597983_2598688_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZX83451.1|2598735_2599155_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZX83452.1|2599167_2599575_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZX84808.1|2599758_2600469_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZX83453.1|2600595_2600886_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZX83454.1|2600903_2601386_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZX83455.1|2605891_2607046_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZX84809.1|2607351_2608368_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX83456.1|2608614_2609403_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83457.1|2609469_2610150_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX83458.1|2610146_2610917_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZX83459.1|2611015_2611966_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83460.1|2612021_2612939_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZX83461.1|2612949_2614128_-	mandelate racemase	NA	NA	NA	NA	NA
AZX83462.1|2614147_2615143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83463.1|2616731_2617340_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZX83464.1|2617327_2618368_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX83465.1|2618385_2619348_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83466.1|2619344_2620538_-	CoA transferase	NA	NA	NA	NA	NA
AZX83467.1|2620534_2621332_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX83468.1|2621357_2622344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83469.1|2622362_2624402_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZX84810.1|2624603_2625284_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83470.1|2625297_2626209_-	CoA ester lyase	NA	NA	NA	NA	NA
AZX83471.1|2626205_2626784_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX83472.1|2626922_2627828_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83473.1|2627835_2631255_+	nuclease	NA	NA	NA	NA	NA
AZX83474.1|2631242_2633843_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZX83475.1|2634798_2635431_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83476.1|2635824_2636583_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83477.1|2636579_2637782_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX83478.1|2637969_2638920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83479.1|2639827_2640973_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX84811.1|2640992_2641715_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX83480.1|2641831_2642011_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83481.1|2642076_2643027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2807680	2871172	4106374	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	56	NA	NA
AZX83612.1|2807680_2808631_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83613.1|2808617_2808812_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83614.1|2808959_2809565_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX83615.1|2809618_2810932_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX83616.1|2811006_2811477_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX83617.1|2811476_2812265_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX83618.1|2812275_2813928_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX83619.1|2814015_2814966_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84824.1|2816127_2816634_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX83620.1|2816630_2817395_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX83621.1|2817410_2817695_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX83622.1|2817759_2818749_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX83623.1|2818920_2819850_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX83624.1|2819821_2820508_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX83625.1|2820541_2821087_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX83626.1|2821131_2822397_+	peptidase M48	NA	NA	NA	NA	NA
AZX83627.1|2822393_2823296_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX83628.1|2824477_2825422_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX83629.1|2825516_2827034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83630.1|2827075_2828704_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX83631.1|2828811_2829693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83632.1|2832805_2833180_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX83633.1|2833204_2833543_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX83634.1|2833586_2835221_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX83635.1|2835259_2836606_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX84825.1|2836713_2838135_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX83636.1|2838204_2838789_-	nitroreductase	NA	NA	NA	NA	NA
AZX83637.1|2838891_2839842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83638.1|2839976_2841083_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83639.1|2841093_2842191_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX83640.1|2842335_2843541_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX83641.1|2843547_2844069_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX83642.1|2844065_2844557_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX83643.1|2844553_2844805_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX83644.1|2844785_2845271_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX83645.1|2845406_2848868_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83646.1|2848864_2849770_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX83647.1|2849779_2850211_-	lipoprotein	NA	NA	NA	NA	NA
AZX84826.1|2850457_2850961_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX83648.1|2850972_2852439_+	MFS transporter	NA	NA	NA	NA	NA
AZX83649.1|2852513_2853389_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84827.1|2853385_2854393_-	biotin synthase	NA	NA	NA	NA	NA
AZX83650.1|2854860_2855166_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX83651.1|2855256_2855847_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84828.1|2856037_2857054_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX83652.1|2857245_2859582_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZX83653.1|2859664_2860099_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX83654.1|2861245_2862196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83655.1|2862192_2862987_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX83656.1|2863018_2863723_-	oxidoreductase	NA	NA	NA	NA	NA
AZX83657.1|2863797_2864598_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX83658.1|2864594_2865002_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX83659.1|2864998_2865640_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX83660.1|2865632_2867654_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX83661.1|2868893_2870225_+	MFS transporter	NA	NA	NA	NA	NA
AZX83662.1|2870221_2871172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2885647	2927006	4106374	protease,transposase	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
AZX83672.1|2885647_2886598_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83673.1|2886928_2890750_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX83674.1|2890906_2891575_-	lipoprotein	NA	NA	NA	NA	NA
AZX83675.1|2891579_2893253_-	MCE family protein	NA	NA	NA	NA	NA
AZX83676.1|2893271_2894591_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX83677.1|2894595_2896947_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX84829.1|2896966_2899135_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX83678.1|2899131_2904321_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX83679.1|2904410_2904725_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX83680.1|2904952_2905198_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX83681.1|2905292_2905811_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX83682.1|2905910_2907116_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX83683.1|2907231_2908629_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX83684.1|2908745_2909324_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX83685.1|2909396_2910788_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX83686.1|2910955_2911906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83687.1|2912186_2912807_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX83688.1|2912803_2913217_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX83689.1|2913213_2914257_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX83690.1|2914312_2914501_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83691.1|2914510_2915275_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX83692.1|2915365_2916022_+	adenylate kinase	NA	NA	NA	NA	NA
AZX83693.1|2916113_2916872_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX83694.1|2916897_2918499_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX83695.1|2918699_2919704_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX83696.1|2919804_2920068_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX83697.1|2920185_2920962_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX83698.1|2921552_2922503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83699.1|2924886_2925999_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX83700.1|2926055_2927006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	2957391	3011622	4106374	transposase	Planktothrix_phage(16.67%)	51	NA	NA
AZX83729.1|2957391_2958342_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83730.1|2958328_2958574_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83731.1|2958462_2959359_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX83732.1|2961636_2963862_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX83733.1|2964026_2965115_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX83734.1|2965071_2965725_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX83735.1|2965772_2966570_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83736.1|2967101_2968052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83737.1|2968132_2969281_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX83738.1|2969337_2970288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83739.1|2970274_2970493_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83740.1|2970386_2970692_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX83741.1|2970720_2971155_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX83742.1|2971156_2972401_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX83743.1|2972397_2973108_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84831.1|2973122_2974034_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX83744.1|2974396_2974801_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83745.1|2974797_2975256_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83746.1|2975262_2976171_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84832.1|2976167_2977034_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX83747.1|2977020_2977848_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX83748.1|2977858_2978986_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX83749.1|2980063_2981302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83750.1|2981343_2982606_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX83751.1|2982612_2983365_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX83752.1|2983416_2983602_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83753.1|2983877_2984342_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX83754.1|2984373_2985033_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX83755.1|2985177_2987286_+	AsmA family protein	NA	NA	NA	NA	NA
AZX83756.1|2987282_2988233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83757.1|2988336_2988957_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84833.1|2989060_2989801_+	oxidoreductase	NA	NA	NA	NA	NA
AZX83758.1|2990935_2992060_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83759.1|2992105_2992474_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83760.1|2992715_2993666_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83761.1|2994701_2995244_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83762.1|2995448_2995643_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83763.1|2995629_2996580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83764.1|2996576_2997542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83765.1|2997611_2998448_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZX83766.1|2998924_3000070_+	porin	NA	NA	NA	NA	NA
AZX83767.1|3000131_3001082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83768.1|3001274_3002057_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX84834.1|3002070_3002820_-	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZX84835.1|3002847_3004194_-	MFS transporter	NA	NA	NA	NA	NA
AZX83769.1|3004219_3005149_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX83770.1|3005264_3006170_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX83771.1|3006187_3007387_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX83772.1|3007459_3008152_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZX84836.1|3008200_3010690_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZX83773.1|3010671_3011622_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3234593	3269431	4106374	transposase,holin	Erwinia_phage(20.0%)	36	NA	NA
AZX83950.1|3234593_3235544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83951.1|3235988_3236300_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX83952.1|3236299_3236830_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83953.1|3236992_3237943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83954.1|3238232_3238697_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX83955.1|3238711_3240217_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX83956.1|3240470_3242078_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX83957.1|3242133_3243039_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX83958.1|3243479_3244430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83959.1|3244528_3245479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX83960.1|3245560_3246142_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX84851.1|3246566_3246872_+	RND transporter	NA	NA	NA	NA	NA
AZX83961.1|3246885_3248220_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX83962.1|3248241_3248781_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX83963.1|3248928_3249393_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX83964.1|3249535_3250651_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX83965.1|3250927_3251431_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX83966.1|3251568_3251769_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83967.1|3251759_3252482_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX83968.1|3252478_3253375_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX83969.1|3253371_3254307_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84852.1|3254312_3254936_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX83970.1|3254926_3255895_+	nickel transporter	NA	NA	NA	NA	NA
AZX83971.1|3255943_3258085_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX83972.1|3258097_3259078_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX83973.1|3259092_3259785_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX83974.1|3259811_3260723_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX83975.1|3260765_3261656_-	acyltransferase	NA	NA	NA	NA	NA
AZX83976.1|3261652_3262507_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX83977.1|3262655_3263954_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX83978.1|3264064_3264316_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX83979.1|3264395_3265436_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX83980.1|3265715_3267134_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX83981.1|3267204_3267540_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX83982.1|3267539_3268382_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX83983.1|3268480_3269431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3281260	3332139	4106374	integrase,transposase,protease,tRNA	Planktothrix_phage(33.33%)	40	3314935:3314953	3334823:3334841
AZX83992.1|3281260_3282211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84854.1|3282523_3284002_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX83993.1|3284008_3285118_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX83994.1|3285129_3285810_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX83995.1|3285831_3286587_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84855.1|3286722_3287607_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX83996.1|3287694_3288276_+	hypothetical protein	NA	NA	NA	NA	NA
AZX83997.1|3288368_3288491_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83998.1|3288536_3288836_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX84856.1|3288987_3289413_-	hypothetical protein	NA	NA	NA	NA	NA
AZX83999.1|3291619_3292123_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX84000.1|3292138_3293089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84001.1|3293075_3293273_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84002.1|3293616_3294390_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84003.1|3294522_3295533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84004.1|3295684_3297340_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX84005.1|3297394_3297736_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX84006.1|3297749_3299189_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX84007.1|3299321_3300137_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84008.1|3300155_3300344_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84009.1|3300330_3301281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84010.1|3302668_3303616_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84011.1|3303842_3304583_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84012.1|3304668_3305619_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84013.1|3307060_3308632_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX84014.1|3308964_3310818_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84015.1|3310862_3313427_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX84016.1|3313845_3314796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3314935:3314953	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX84017.1|3317661_3318156_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX84018.1|3318172_3319123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84019.1|3319109_3319310_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84020.1|3319306_3320518_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX84021.1|3320533_3323485_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX84022.1|3323486_3326606_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX84857.1|3326602_3326743_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX84023.1|3326753_3327800_-	Fic family protein	NA	NA	NA	NA	NA
AZX84024.1|3328141_3329269_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX84025.1|3329548_3330640_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX84026.1|3330712_3331495_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX84027.1|3331491_3332139_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3334823:3334841	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3381026	3434767	4106374	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX84064.1|3381026_3381977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84065.1|3382381_3383026_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX84066.1|3383050_3383635_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX84067.1|3383735_3384353_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX84068.1|3384355_3386071_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX84069.1|3386067_3386376_-	urease subunit beta	NA	NA	NA	NA	NA
AZX84070.1|3386392_3387028_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX84071.1|3387054_3387357_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX84072.1|3387457_3388312_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX84073.1|3388893_3389166_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX84074.1|3389583_3389991_-	GFA family protein	NA	NA	NA	NA	NA
AZX84075.1|3390360_3391155_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84076.1|3391255_3392491_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX84077.1|3392559_3393576_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84078.1|3393572_3394964_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX84079.1|3394960_3396157_+	MFS transporter	NA	NA	NA	NA	NA
AZX84080.1|3396153_3397692_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX84081.1|3397688_3398948_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84082.1|3400888_3401839_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84083.1|3402605_3403700_-	CoA transferase	NA	NA	NA	NA	NA
AZX84084.1|3403692_3405027_-	CoA ligase	NA	NA	NA	NA	NA
AZX84085.1|3404980_3405664_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84086.1|3405689_3406853_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX84087.1|3406849_3407851_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84088.1|3407850_3408723_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84089.1|3408719_3409469_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX84090.1|3409465_3410257_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX84091.1|3410253_3411393_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84092.1|3411701_3412454_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX84093.1|3412487_3413270_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84094.1|3413273_3413663_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX84095.1|3414802_3415666_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84096.1|3415701_3416790_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84097.1|3416786_3417737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84098.1|3417723_3418092_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84099.1|3418090_3421069_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84100.1|3421995_3422874_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX84101.1|3424822_3425773_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84102.1|3425769_3426237_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX84103.1|3426279_3427050_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX84104.1|3427070_3427871_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX84105.1|3427881_3429291_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX84106.1|3429385_3430171_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX84860.1|3430410_3431427_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX84107.1|3431534_3431927_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX84108.1|3432064_3432745_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX84109.1|3432749_3433748_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84110.1|3433816_3434767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3440922	3500220	4106374	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZX84114.1|3440922_3442686_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX84115.1|3442797_3443676_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX84116.1|3443788_3444604_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX84117.1|3444607_3444859_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX84861.1|3444943_3445960_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX84118.1|3446290_3446512_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84119.1|3448872_3449790_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX84120.1|3450287_3451496_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX84121.1|3451575_3453147_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84122.1|3453264_3454200_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX84123.1|3454388_3455333_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX84124.1|3455401_3455617_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84125.1|3455900_3461618_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX84126.1|3461623_3462751_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX84127.1|3462806_3463433_+	aminotransferase	NA	NA	NA	NA	NA
AZX84862.1|3463704_3464721_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX84128.1|3464816_3465527_-	oxidoreductase	NA	NA	NA	NA	NA
AZX84863.1|3465523_3466513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84129.1|3466644_3468240_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX84130.1|3468242_3468980_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84131.1|3469135_3470008_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX84132.1|3470276_3471497_+	MFS transporter	NA	NA	NA	NA	NA
AZX84133.1|3471493_3472153_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX84134.1|3472224_3472857_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX84135.1|3472886_3473405_+	flavin reductase	NA	NA	NA	NA	NA
AZX84136.1|3473415_3474525_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX84137.1|3474571_3475426_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX84138.1|3475427_3476330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84139.1|3477552_3478503_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84140.1|3480257_3481247_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84141.1|3481422_3482211_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX84142.1|3482207_3483239_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX84143.1|3483257_3483821_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX84144.1|3483876_3485397_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX84145.1|3485660_3486365_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX84146.1|3486372_3487110_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX84147.1|3487215_3487590_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX84148.1|3487632_3488922_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84149.1|3488918_3490088_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX84150.1|3490084_3490924_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX84151.1|3490983_3491919_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX84152.1|3491931_3492882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84153.1|3492980_3493943_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX84154.1|3493974_3494334_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX84155.1|3494458_3495361_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX84156.1|3495362_3497135_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX84157.1|3497169_3497946_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84158.1|3499269_3500220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3515158	3573231	4106374	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZX84170.1|3515158_3516109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84171.1|3516237_3517371_-	peptidase	NA	NA	NA	NA	NA
AZX84172.1|3517414_3518320_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX84173.1|3518322_3520023_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX84174.1|3520019_3520940_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX84175.1|3520947_3521925_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX84176.1|3521983_3523018_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX84177.1|3524992_3525229_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84178.1|3525355_3526219_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX84179.1|3526307_3527129_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84180.1|3527208_3527946_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX84181.1|3527942_3528935_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX84182.1|3529048_3529711_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84183.1|3529755_3530904_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX84184.1|3533227_3534178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84185.1|3534518_3535469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84186.1|3535567_3536518_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84187.1|3536814_3537312_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84188.1|3537354_3539130_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX84866.1|3539176_3540004_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX84189.1|3540010_3540745_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX84190.1|3541914_3542709_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84191.1|3542998_3543589_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX84192.1|3543622_3544951_-	amidase	NA	NA	NA	NA	NA
AZX84193.1|3545025_3546171_-	transporter	NA	NA	NA	NA	NA
AZX84194.1|3546282_3547281_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84195.1|3547243_3547678_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX84196.1|3549194_3550079_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX84197.1|3550075_3551281_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX84198.1|3551277_3552138_-	endonuclease	NA	NA	NA	NA	NA
AZX84199.1|3552250_3554041_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX84200.1|3554081_3554747_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX84201.1|3554747_3555056_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX84867.1|3555221_3556508_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84202.1|3557941_3558892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84203.1|3560843_3562058_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX84204.1|3562163_3563153_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX84205.1|3563149_3563758_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX84206.1|3563770_3564400_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX84207.1|3564396_3565017_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX84208.1|3565048_3565840_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX84209.1|3566682_3567147_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX84210.1|3567165_3568092_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX84211.1|3568145_3569432_-	cytochrome c	NA	NA	NA	NA	NA
AZX84212.1|3570362_3571235_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX84213.1|3571231_3572182_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX84214.1|3572280_3573231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	3705354	3843734	4106374	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	122	3751047:3751064	3795687:3795704
AZX84323.1|3705354_3706305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84324.1|3706404_3707355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84325.1|3707351_3707987_-	transporter	NA	NA	NA	NA	NA
AZX84326.1|3708116_3709016_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZX84327.1|3709111_3709603_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZX84328.1|3709649_3710615_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84329.1|3711748_3712990_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZX84330.1|3713103_3714120_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZX84331.1|3714154_3714631_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84332.1|3714773_3715682_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX84333.1|3715795_3716908_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZX84334.1|3717008_3717542_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX84335.1|3717630_3718881_+	kynureninase	NA	NA	NA	NA	NA
AZX84336.1|3718982_3719495_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZX84337.1|3719400_3719607_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84338.1|3719593_3720544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84339.1|3720609_3721548_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZX84340.1|3721570_3722197_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZX84341.1|3722193_3722850_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZX84342.1|3722846_3723449_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84343.1|3723455_3724082_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZX84344.1|3724223_3724793_+	bacterioferritin	NA	NA	NA	NA	NA
AZX84345.1|3724863_3726183_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZX84346.1|3726289_3726481_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX84347.1|3726732_3728022_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX84348.1|3728176_3729172_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84349.1|3729256_3729931_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84350.1|3729927_3730878_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84351.1|3730864_3731047_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84352.1|3731039_3732281_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZX84353.1|3732277_3733222_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZX84354.1|3733340_3734291_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84355.1|3734250_3735180_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84356.1|3735233_3735569_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZX84357.1|3735613_3736378_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX84358.1|3736401_3737142_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84359.1|3737149_3738724_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZX84360.1|3738737_3739715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84361.1|3739987_3740587_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZX84362.1|3740620_3747523_-	autotransporter BatB	NA	NA	NA	NA	NA
AZX84363.1|3747969_3748101_-	entericidin	NA	NA	NA	NA	NA
AZX84364.1|3748132_3748294_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84365.1|3748366_3748573_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZX84366.1|3749577_3750237_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZX84367.1|3750264_3751410_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3751047:3751064	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX84368.1|3751550_3751886_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZX84369.1|3751960_3752821_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZX84370.1|3753084_3753786_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX84371.1|3753955_3754351_+	RidA family protein	NA	NA	NA	NA	NA
AZX84372.1|3754460_3755411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84373.1|3755421_3756063_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84374.1|3756229_3756472_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84375.1|3756570_3757521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84376.1|3757556_3758024_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZX84377.1|3758257_3758635_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84378.1|3758631_3758814_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84379.1|3758817_3759804_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZX84380.1|3759800_3760448_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZX84381.1|3760505_3761033_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84382.1|3761066_3762254_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZX84383.1|3762243_3762606_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZX84384.1|3762598_3762718_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84385.1|3762718_3762919_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX84386.1|3762915_3763905_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZX84387.1|3765391_3767362_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZX84388.1|3767603_3768002_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84389.1|3768010_3768934_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84390.1|3769391_3770342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84391.1|3770572_3772264_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX84392.1|3772312_3772585_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX84393.1|3772581_3772953_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX84394.1|3773048_3773183_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX84395.1|3773588_3774998_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX84396.1|3774994_3776110_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX84397.1|3776204_3778658_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX84398.1|3778776_3779568_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84399.1|3779687_3781115_+	amidase	NA	NA	NA	NA	NA
AZX84877.1|3781153_3782125_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84400.1|3782543_3783707_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX84401.1|3783794_3784640_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX84402.1|3786196_3787147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84403.1|3787701_3788076_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84404.1|3788150_3789209_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX84405.1|3789232_3790183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84406.1|3793064_3794234_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX84878.1|3794334_3795942_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3795687:3795704	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZX84407.1|3795988_3798010_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX84408.1|3798038_3798284_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX84409.1|3798297_3799488_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX84410.1|3799683_3800649_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84411.1|3800671_3801811_-	alanine racemase	NA	NA	NA	NA	NA
AZX84412.1|3802022_3802985_+	immunogenic protein	NA	NA	NA	NA	NA
AZX84413.1|3803108_3805133_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX84414.1|3805329_3807573_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX84415.1|3807851_3808310_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84416.1|3809237_3811859_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84417.1|3811922_3814550_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX84418.1|3814701_3815766_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84419.1|3815762_3816536_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX84420.1|3816544_3817378_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX84421.1|3817390_3818170_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX84879.1|3818204_3819677_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX84422.1|3819704_3820463_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX84423.1|3820518_3822369_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX84424.1|3822462_3822939_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX84425.1|3822955_3823876_-	bestrophin	NA	NA	NA	NA	NA
AZX84426.1|3823982_3824483_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZX84427.1|3824856_3825549_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX84428.1|3826803_3830577_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZX84429.1|3830913_3832803_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZX84430.1|3832814_3833708_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZX84431.1|3833733_3834609_+	thiazole synthase	NA	NA	NA	NA	NA
AZX84432.1|3834605_3835457_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX84433.1|3835518_3836199_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZX84434.1|3836202_3836562_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84435.1|3836562_3837522_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84436.1|3837542_3838031_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZX84880.1|3838312_3839329_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX84437.1|3839520_3840624_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZX84438.1|3840710_3841475_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZX84439.1|3841596_3842787_+	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZX84440.1|3842783_3843734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025375	Bordetella pertussis strain I439 chromosome, complete genome	4106374	4005442	4070354	4106374	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX84601.1|4005442_4005928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84602.1|4006146_4007127_+	protein BugT	NA	NA	NA	NA	NA
AZX84603.1|4007393_4008203_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX84604.1|4008242_4008923_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX84605.1|4008916_4009375_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX84606.1|4009386_4009749_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX84607.1|4009831_4010515_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX84608.1|4010570_4010879_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX84609.1|4010897_4011212_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX84610.1|4011208_4013683_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX84611.1|4013690_4015082_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX84612.1|4015078_4015264_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX84613.1|4015242_4015944_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX84614.1|4015940_4016762_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX84889.1|4016742_4017867_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX84615.1|4017859_4018879_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX84616.1|4019084_4020119_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX84890.1|4020219_4021011_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX84617.1|4021093_4021468_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX84618.1|4021445_4022855_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX84619.1|4022847_4024230_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX84620.1|4024564_4026169_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX84621.1|4026204_4027218_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX84622.1|4027228_4028155_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX84623.1|4028545_4029496_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84624.1|4029665_4030892_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX84625.1|4031091_4031958_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX84626.1|4031950_4032913_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX84627.1|4033013_4033964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84628.1|4034062_4035013_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84629.1|4035111_4036062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX84630.1|4036058_4037552_-	RND transporter	NA	NA	NA	NA	NA
AZX84631.1|4037548_4040656_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX84632.1|4040652_4043721_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX84633.1|4043717_4044968_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX84634.1|4045148_4045910_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX84635.1|4045942_4046593_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX84636.1|4046595_4047435_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX84637.1|4047675_4048419_+	hypothetical protein	NA	NA	NA	NA	NA
AZX84638.1|4048501_4048849_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX84639.1|4048946_4049789_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX84640.1|4049833_4050721_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX84641.1|4050747_4050936_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX84642.1|4051033_4052491_+	MFS transporter	NA	NA	NA	NA	NA
AZX84643.1|4052477_4054004_+	glycerol kinase	NA	NA	NA	NA	NA
AZX84644.1|4054022_4054490_-	hypothetical protein	NA	NA	NA	NA	NA
AZX84645.1|4054489_4055512_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX84646.1|4055632_4056373_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX84647.1|4056427_4057528_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84648.1|4057529_4058720_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX84649.1|4058839_4059856_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX84650.1|4060174_4060846_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX84651.1|4060842_4061751_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX84652.1|4061962_4062610_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX84653.1|4066461_4067538_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX84654.1|4067548_4068358_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX84655.1|4068447_4069221_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX84656.1|4069403_4070354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
