The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	0	122073	4103253	transposase,tRNA,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZY24403.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY24404.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY24405.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY24406.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY24407.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY24408.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY24409.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY24410.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY24411.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY24412.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY24413.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY24414.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY24415.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY24416.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY27806.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY24417.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24418.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY24419.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY24420.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24421.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY24422.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24423.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY24424.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY27807.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24425.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY24426.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY24427.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24428.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY24429.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY24430.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY24431.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY24432.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY24433.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY24434.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY24435.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY24436.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY24437.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24438.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24439.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY24440.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24441.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY24442.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY24443.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24444.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY24445.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY24446.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY24447.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY24448.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY24449.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY24450.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24451.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY24452.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY24453.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27808.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24454.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY24455.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY24456.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY24457.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY24458.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24459.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24460.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY24461.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY24462.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY24463.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY24464.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27809.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24465.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY24466.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27810.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24467.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY24468.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY24469.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY24470.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY24471.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY24472.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY24473.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY24474.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY24475.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY24476.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY24477.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY24478.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY24479.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24480.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY24481.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY24482.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY24483.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY24484.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24485.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY24486.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY24487.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY24488.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY24489.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY24490.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY24491.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY24492.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY24493.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY24494.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24495.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY24496.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY24497.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY24498.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY27811.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY24499.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24500.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY24501.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY24502.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY24503.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY24504.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY24505.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY24506.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	164894	225405	4103253	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY24538.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24539.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24540.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZY24541.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY24542.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY24543.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY24544.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24545.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZY24546.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24547.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZY24548.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZY24549.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY24550.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY24551.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24552.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY24553.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY24554.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY24555.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY24556.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZY24557.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY27816.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY24558.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24559.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY24560.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY24561.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24562.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY24563.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY24564.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY24565.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY24566.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY24567.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24568.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZY24569.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24570.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24571.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY24572.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZY24573.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY24574.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZY24575.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY24576.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY24577.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY27817.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24578.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY24579.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY24580.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY24581.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY24582.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY24583.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY24584.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY24585.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY24586.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	233337	286926	4103253	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
AZY24594.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24595.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24596.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24597.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY24598.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY24599.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24600.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY24601.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24602.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24603.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY24604.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY24605.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY24606.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY24607.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY24608.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY24609.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY24610.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27818.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY24611.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY24612.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY24613.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZY24614.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY24615.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24616.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY24617.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZY24618.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24619.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24620.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY24621.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY24622.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY24623.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY24624.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY24625.1|274102_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY24626.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY24627.1|277142_278093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24628.1|278079_278295_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24629.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY24630.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24631.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY24632.1|279657_280269_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY24633.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
AZY24634.1|281301_282684_-	cytochrome b	NA	NA	NA	NA	NA
AZY24635.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY24636.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY24637.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY27819.1|284842_285979_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY24638.1|285975_286926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	555311	614611	4103253	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY24860.1|555311_556262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24861.1|557585_558362_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY24862.1|558396_560169_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY24863.1|560170_561073_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY24864.1|561197_561557_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY24865.1|561588_562551_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY24866.1|562649_563600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24867.1|563612_564548_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY24868.1|564607_565447_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY24869.1|565443_566613_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY24870.1|566609_567899_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24871.1|567941_568316_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY24872.1|568421_569159_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY24873.1|569166_569871_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY24874.1|570134_571655_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY24875.1|571710_572274_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY24876.1|572292_573324_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY24877.1|573320_574109_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY24878.1|574284_575274_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24879.1|577030_577981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24880.1|579203_580106_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24881.1|580107_580962_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY24882.1|581008_582118_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY24883.1|582128_582647_-	flavin reductase	NA	NA	NA	NA	NA
AZY24884.1|582676_583309_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY24885.1|583380_584040_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY24886.1|584036_585257_-	MFS transporter	NA	NA	NA	NA	NA
AZY24887.1|585525_586398_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY24888.1|586553_587291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24889.1|587293_588889_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY27840.1|589020_590010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24890.1|590006_590717_+	oxidoreductase	NA	NA	NA	NA	NA
AZY24891.1|590812_591829_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY24892.1|592100_592727_-	aminotransferase	NA	NA	NA	NA	NA
AZY24893.1|592782_593910_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY24894.1|593915_599633_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY24895.1|599916_600132_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24896.1|600200_601145_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY24897.1|601333_602269_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY24898.1|602386_603958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY24899.1|604037_605246_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY24900.1|605743_606661_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY24901.1|609021_609243_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24902.1|609573_610590_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY24903.1|610674_610926_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY24904.1|610929_611745_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY24905.1|611857_612736_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY24906.1|612847_614611_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	620766	674507	4103253	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY24910.1|620766_621717_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24911.1|621785_622784_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24912.1|622788_623469_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY24913.1|623606_623999_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY24914.1|624106_625123_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY24915.1|625362_626148_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY24916.1|626242_627652_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY24917.1|627662_628463_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY24918.1|628483_629254_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY24919.1|629296_629764_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY24920.1|629760_630711_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24921.1|632659_633538_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY24922.1|634464_637443_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24923.1|637441_637810_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24924.1|637796_638747_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24925.1|638743_639832_-	hypothetical protein	NA	NA	NA	NA	NA
AZY24926.1|639867_640731_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY24927.1|641870_642260_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY24928.1|642263_643046_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY24929.1|643079_643832_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY24930.1|644140_645280_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY24931.1|645276_646068_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY24932.1|646064_646814_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY24933.1|646810_647683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY24934.1|647682_648684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY24935.1|648680_649844_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY24936.1|649869_650553_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24937.1|650506_651841_+	CoA ligase	NA	NA	NA	NA	NA
AZY24938.1|651833_652928_+	CoA transferase	NA	NA	NA	NA	NA
AZY27841.1|653694_654645_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY24939.1|656585_657845_+	hypothetical protein	NA	NA	NA	NA	NA
AZY24940.1|657841_659380_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY24941.1|659376_660573_-	MFS transporter	NA	NA	NA	NA	NA
AZY24942.1|660569_661961_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY24943.1|661957_662974_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY24944.1|663042_664278_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY24945.1|664378_665173_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY24946.1|665542_665950_+	GFA family protein	NA	NA	NA	NA	NA
AZY24947.1|666367_666640_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY24948.1|667221_668076_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY24949.1|668176_668479_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY24950.1|668505_669141_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY24951.1|669157_669466_+	urease subunit beta	NA	NA	NA	NA	NA
AZY24952.1|669462_671178_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY24953.1|671180_671798_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY24954.1|671898_672483_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY24955.1|672507_673152_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY24956.1|673556_674507_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	723394	763395	4103253	transposase,tRNA,protease,integrase	Pseudomonas_phage(33.33%)	32	720693:720711	740581:740599
720693:720711	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY24992.1|723394_724042_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY24993.1|724038_724821_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY24994.1|724893_725985_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY24995.1|726264_727392_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY24996.1|727733_728780_+	Fic family protein	NA	NA	NA	NA	NA
AZY27845.1|728790_728931_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY24997.1|728927_732047_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY24998.1|732048_735000_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY24999.1|735015_736227_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY25000.1|736223_736424_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25001.1|736410_737361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25002.1|737377_737872_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY25003.1|737875_738133_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25004.1|738157_739588_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY25005.1|739669_739954_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZY25006.1|740737_741688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
740581:740599	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY25007.1|742106_744671_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY25008.1|744715_746569_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25009.1|746901_748473_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY25010.1|749914_750865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25011.1|750950_751691_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25012.1|751917_752865_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25013.1|754252_755203_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25014.1|755189_755378_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25015.1|755396_756212_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25016.1|756344_757784_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25017.1|757797_758139_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY25018.1|758193_759849_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY25019.1|760000_761011_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25020.1|761143_761917_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25021.1|762260_762458_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25022.1|762444_763395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	773322	820940	4103253	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY25030.1|773322_774273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25031.1|774411_775164_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY25032.1|775402_777127_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY25033.1|777146_778406_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY25034.1|778420_779515_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY25035.1|779511_781638_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY25036.1|781650_782331_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY27849.1|782608_783982_+	MFS transporter	NA	NA	NA	NA	NA
AZY25037.1|783983_785003_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY25038.1|785066_786038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25039.1|786102_787053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25040.1|787151_787994_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY25041.1|787993_788329_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY25042.1|788399_789818_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY25043.1|790097_791138_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY25044.1|791217_791469_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY25045.1|791579_792878_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY25046.1|793026_793881_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY25047.1|793877_794768_+	acyltransferase	NA	NA	NA	NA	NA
AZY25048.1|794810_795722_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY25049.1|795748_796441_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY25050.1|796455_797436_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY25051.1|797448_799590_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY25052.1|799638_800607_-	nickel transporter	NA	NA	NA	NA	NA
AZY27850.1|800597_801221_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY25053.1|801226_802162_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25054.1|802158_803055_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY25055.1|803051_803774_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY25056.1|803764_803965_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25057.1|804102_804606_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY25058.1|804882_805998_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY25059.1|806140_806605_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY25060.1|806752_807292_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY25061.1|807313_808648_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY27851.1|808661_808967_-	RND transporter	NA	NA	NA	NA	NA
AZY25062.1|809391_809973_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY25063.1|810054_811005_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25064.1|811103_812054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25065.1|812494_813400_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25066.1|813455_815063_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY25067.1|815316_816822_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY25068.1|816836_817301_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY25069.1|817590_818541_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25070.1|818703_819234_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25071.1|819233_819545_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY25072.1|819989_820940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1005155	1099192	4103253	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY25213.1|1005155_1006106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25214.1|1006208_1006871_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25215.1|1006973_1007384_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25216.1|1007488_1008490_+	amidase	NA	NA	NA	NA	NA
AZY25217.1|1008492_1009689_+	CoA transferase	NA	NA	NA	NA	NA
AZY25218.1|1009709_1010513_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY25219.1|1010593_1010890_+	histidine kinase	NA	NA	NA	NA	NA
AZY25220.1|1010920_1011484_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY27864.1|1011524_1012382_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY25221.1|1012389_1013139_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY25222.1|1013160_1014033_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25223.1|1014061_1014841_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY25224.1|1014874_1015672_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25225.1|1017123_1018296_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY25226.1|1018326_1018719_+	RidA family protein	NA	NA	NA	NA	NA
AZY25227.1|1018712_1019573_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY25228.1|1019576_1020539_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27865.1|1021315_1022005_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY25229.1|1022865_1023816_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25230.1|1024165_1025035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25231.1|1025105_1025801_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY25232.1|1025790_1026300_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY25233.1|1026296_1027517_+	MFS transporter	NA	NA	NA	NA	NA
AZY25234.1|1027464_1028367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25235.1|1029253_1030540_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25236.1|1030578_1031952_+	amidase	NA	NA	NA	NA	NA
AZY25237.1|1031990_1032692_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY25238.1|1032990_1033980_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25239.1|1034080_1034542_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY25240.1|1034557_1035106_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY25241.1|1035247_1036723_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY25242.1|1036828_1037920_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY25243.1|1037923_1038706_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY25244.1|1038715_1039504_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY25245.1|1040629_1041064_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY25246.1|1041060_1042071_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY25247.1|1042114_1043041_-	VOC family protein	NA	NA	NA	NA	NA
AZY25248.1|1043327_1043696_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY27866.1|1043912_1044863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27867.1|1044844_1047334_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY25249.1|1047382_1048075_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY25250.1|1048147_1049347_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY25251.1|1049364_1050270_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25252.1|1050385_1051315_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY27868.1|1051340_1052687_+	MFS transporter	NA	NA	NA	NA	NA
AZY27869.1|1052714_1053464_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY25253.1|1053477_1054260_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY25254.1|1054452_1055403_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25255.1|1055464_1056610_-	porin	NA	NA	NA	NA	NA
AZY25256.1|1057086_1057923_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY25257.1|1057992_1058958_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25258.1|1058954_1059905_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25259.1|1059891_1060086_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25260.1|1060290_1060833_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25261.1|1061868_1062819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25262.1|1063060_1063429_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25263.1|1063474_1064599_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27870.1|1065733_1066474_-	oxidoreductase	NA	NA	NA	NA	NA
AZY25264.1|1066577_1067198_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25265.1|1067301_1068252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25266.1|1068248_1070357_-	AsmA family protein	NA	NA	NA	NA	NA
AZY25267.1|1070501_1071161_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY25268.1|1071192_1071657_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY25269.1|1071932_1072118_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25270.1|1072169_1072922_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY25271.1|1072928_1074191_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25272.1|1074232_1075471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25273.1|1076548_1077676_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY25274.1|1077686_1078514_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY25275.1|1078500_1079367_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY25276.1|1080733_1081138_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25277.1|1081229_1082180_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27871.1|1082549_1083461_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25278.1|1083475_1084186_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25279.1|1084182_1085427_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY25280.1|1085428_1085863_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY25281.1|1085891_1086197_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY25282.1|1086090_1086309_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25283.1|1086295_1087246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25284.1|1087302_1088451_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY25285.1|1088531_1089482_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25286.1|1090013_1090811_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25287.1|1090858_1091512_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY25288.1|1091468_1092557_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY25289.1|1092721_1094947_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY25290.1|1097224_1098121_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY25291.1|1098009_1098255_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25292.1|1098241_1099192_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1129578	1200550	4103253	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY25321.1|1129578_1130529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25322.1|1130585_1131698_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY25323.1|1134081_1135032_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25324.1|1135622_1136399_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY25325.1|1136516_1136780_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY25326.1|1136880_1137885_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY25327.1|1138085_1139687_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY25328.1|1139712_1140471_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY25329.1|1140562_1141219_-	adenylate kinase	NA	NA	NA	NA	NA
AZY25330.1|1141309_1142074_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY25331.1|1142083_1142272_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25332.1|1142327_1143371_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY25333.1|1143367_1143781_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY25334.1|1143777_1144398_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY25335.1|1144678_1145629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25336.1|1145796_1147188_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY25337.1|1147260_1147839_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY25338.1|1147955_1149353_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY25339.1|1149468_1150674_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY25340.1|1150773_1151292_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY25341.1|1151386_1151632_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY25342.1|1151859_1152174_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY25343.1|1152263_1157453_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY27873.1|1157449_1159618_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY25344.1|1159637_1161989_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY25345.1|1161993_1163313_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY25346.1|1163331_1165005_+	MCE family protein	NA	NA	NA	NA	NA
AZY25347.1|1165009_1165678_+	lipoprotein	NA	NA	NA	NA	NA
AZY25348.1|1165834_1169656_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY25349.1|1169986_1170937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25350.1|1170958_1172104_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25351.1|1172252_1173182_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY25352.1|1173178_1174267_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY25353.1|1174263_1175067_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY25354.1|1175063_1175795_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY25355.1|1175852_1177142_-	MFS transporter	NA	NA	NA	NA	NA
AZY25356.1|1177238_1177841_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25357.1|1182395_1182734_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY25358.1|1183402_1183708_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25359.1|1185414_1186365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25360.1|1186361_1187693_-	MFS transporter	NA	NA	NA	NA	NA
AZY25361.1|1188932_1190954_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY25362.1|1190946_1191588_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY25363.1|1191584_1191992_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY25364.1|1191988_1192789_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY25365.1|1192863_1193568_+	oxidoreductase	NA	NA	NA	NA	NA
AZY25366.1|1193599_1194394_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY25367.1|1194390_1195341_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25368.1|1195439_1196390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25369.1|1196488_1196923_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY25370.1|1197005_1199342_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY25371.1|1199533_1200550_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1300770	1357981	4103253	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY25449.1|1300770_1301721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25450.1|1305467_1306079_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY25451.1|1306301_1307762_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY25452.1|1307858_1309451_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY25453.1|1309437_1309716_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25454.1|1309774_1310062_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY25455.1|1310063_1311404_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY25456.1|1311499_1312189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25457.1|1312201_1313632_+	MFS transporter	NA	NA	NA	NA	NA
AZY25458.1|1315356_1316178_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25459.1|1316188_1317760_+	amidohydrolase	NA	NA	NA	NA	NA
AZY25460.1|1317788_1318766_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25461.1|1318792_1319596_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY25462.1|1319592_1320387_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY25463.1|1320394_1321630_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY25464.1|1321622_1322057_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY25465.1|1322806_1323757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25466.1|1324378_1326106_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY25467.1|1326217_1327576_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY25468.1|1327696_1327882_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25469.1|1327868_1328819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25470.1|1328859_1329930_+	FUSC family protein	NA	NA	NA	NA	NA
AZY27879.1|1329952_1330831_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY25471.1|1331002_1331974_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY25472.1|1332136_1332979_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25473.1|1333140_1333821_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY25474.1|1333814_1334984_+	amine oxidase	NA	NA	NA	NA	NA
AZY25475.1|1334980_1336012_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY25476.1|1336055_1337297_+	MFS transporter	NA	NA	NA	NA	NA
AZY25477.1|1337331_1338864_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY25478.1|1338944_1339568_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY25479.1|1339598_1340210_+	LysE family translocator	NA	NA	NA	NA	NA
AZY25480.1|1340245_1340716_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY25481.1|1341147_1342152_+	peptidase M20	NA	NA	NA	NA	NA
AZY25482.1|1342188_1343703_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25483.1|1343706_1344666_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY25484.1|1344694_1345498_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY25485.1|1345499_1347134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY25486.1|1347217_1348279_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY25487.1|1348477_1348747_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25488.1|1348750_1349275_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY25489.1|1349690_1350641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25490.1|1350637_1351708_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY25491.1|1351780_1352419_+	DedA family protein	NA	NA	NA	NA	NA
AZY25492.1|1352713_1352941_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY25493.1|1353063_1353777_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY25494.1|1354021_1354972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25495.1|1355075_1355357_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25496.1|1355471_1356920_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY25497.1|1357030_1357981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1448214	1502443	4103253	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
AZY25579.1|1448214_1449165_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25580.1|1449331_1449685_+	cytochrome C	NA	NA	NA	NA	NA
AZY25581.1|1449697_1450060_+	cytochrome	NA	NA	NA	NA	NA
AZY25582.1|1450101_1450527_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY25583.1|1450729_1451986_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY25584.1|1452184_1453165_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25585.1|1453314_1454556_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25586.1|1454654_1455605_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25587.1|1455613_1456309_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY25588.1|1459130_1459730_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY25589.1|1459740_1461906_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY25590.1|1461929_1463714_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY25591.1|1463713_1463803_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY25592.1|1464497_1464770_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY25593.1|1464769_1466836_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY25594.1|1466832_1467783_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25595.1|1468947_1469280_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY25596.1|1469276_1469963_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY25597.1|1469949_1470909_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY27887.1|1470950_1473311_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY25598.1|1473310_1473943_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY25599.1|1474005_1475385_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY25600.1|1475431_1476787_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY25601.1|1477065_1477314_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25602.1|1477501_1477819_-	virulence factor	NA	NA	NA	NA	NA
AZY25603.1|1478091_1478607_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY25604.1|1478700_1478862_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25605.1|1478877_1479633_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY25606.1|1479971_1480178_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25607.1|1480185_1480845_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY25608.1|1481139_1483344_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY25609.1|1483454_1484678_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY25610.1|1484800_1485775_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY25611.1|1485842_1487036_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY25612.1|1487050_1487851_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY25613.1|1487847_1489704_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY25614.1|1489700_1490306_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY25615.1|1490324_1491710_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY25616.1|1492435_1493662_+	transporter	NA	NA	NA	NA	NA
AZY25617.1|1493750_1494533_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY25618.1|1494631_1495582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25619.1|1495608_1496382_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY25620.1|1496393_1497635_+	MFS transporter	NA	NA	NA	NA	NA
AZY25621.1|1499416_1500367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25622.1|1500398_1501496_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY25623.1|1501492_1502443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1544292	1603162	4103253	transposase,tRNA,protease	Streptococcus_virus(11.11%)	53	NA	NA
AZY27888.1|1544292_1544781_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY25669.1|1544898_1545477_+|protease	protease	protease	NA	NA	NA	NA
AZY25670.1|1545549_1545951_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY25671.1|1546049_1547000_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25672.1|1547006_1548119_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY25673.1|1548805_1550008_+	MFS transporter	NA	NA	NA	NA	NA
AZY25674.1|1550211_1552872_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25675.1|1552884_1556289_+	nuclease	NA	NA	NA	NA	NA
AZY25676.1|1556956_1559182_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY25677.1|1559228_1559555_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY25678.1|1559605_1560214_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY25679.1|1560312_1561263_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25680.1|1561332_1562097_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY25681.1|1562093_1562693_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27889.1|1562796_1563642_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY25682.1|1563707_1564334_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY25683.1|1564330_1565281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25684.1|1565267_1565456_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25685.1|1565379_1566507_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY25686.1|1566487_1567489_-	aminopeptidase	NA	NA	NA	NA	NA
AZY25687.1|1567594_1569106_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY25688.1|1569102_1570407_-	peptidase	NA	NA	NA	NA	NA
AZY25689.1|1570518_1571079_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY25690.1|1571346_1571901_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY25691.1|1572356_1572572_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY27890.1|1572826_1575424_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY25692.1|1575420_1576608_+	cupin	NA	NA	NA	NA	NA
AZY25693.1|1577267_1577882_+	fimbrial protein	NA	NA	NA	NA	NA
AZY25694.1|1577970_1579098_-	lipoprotein	NA	NA	NA	NA	NA
AZY25695.1|1579109_1580015_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY25696.1|1580907_1581858_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25697.1|1582039_1582792_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY25698.1|1582860_1583520_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY25699.1|1583516_1584245_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY25700.1|1584257_1586537_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY25701.1|1586561_1586765_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY25702.1|1586806_1587454_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY25703.1|1587574_1588492_-	cytochrome C	NA	NA	NA	NA	NA
AZY25704.1|1588488_1589202_-	cytochrome C	NA	NA	NA	NA	NA
AZY25705.1|1589439_1590210_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25706.1|1590214_1590814_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY25707.1|1591058_1592549_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY25708.1|1592607_1592892_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY25709.1|1592888_1593017_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25710.1|1593029_1593185_-	hypothetical protein	NA	NA	NA	NA	NA
AZY25711.1|1593457_1594384_-	YicC family protein	NA	NA	NA	NA	NA
AZY25712.1|1594520_1595261_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY25713.1|1595427_1596804_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY25714.1|1596985_1597891_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY25715.1|1597925_1599665_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY25716.1|1599542_1601345_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY25717.1|1601462_1602113_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY25718.1|1602211_1603162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1648334	1703925	4103253	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY25749.1|1648334_1649285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25750.1|1649343_1650117_+	oxidoreductase	NA	NA	NA	NA	NA
AZY25751.1|1650109_1651666_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY25752.1|1651662_1652613_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25753.1|1653939_1654542_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25754.1|1654781_1655483_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY25755.1|1655476_1656259_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY25756.1|1656443_1657394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25757.1|1657492_1658230_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY25758.1|1658419_1659178_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25759.1|1659224_1660214_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25760.1|1660391_1661360_-	transporter	NA	NA	NA	NA	NA
AZY25761.1|1662899_1663868_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY25762.1|1663876_1664818_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY25763.1|1665291_1666302_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27894.1|1666292_1667807_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY25764.1|1667803_1669150_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27895.1|1669152_1670187_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY25765.1|1670236_1671862_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY25766.1|1672414_1673365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25767.1|1673469_1674417_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27896.1|1674470_1676285_-	histidine kinase	NA	NA	NA	NA	NA
AZY25768.1|1676277_1676952_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY25769.1|1677081_1680156_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY25770.1|1680169_1680469_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY27897.1|1680783_1681407_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY25771.1|1681650_1682520_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY25772.1|1682497_1683442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27898.1|1683527_1684499_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY27899.1|1684566_1685340_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25773.1|1685336_1686533_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY25774.1|1686563_1687514_-	hydrolase	NA	NA	NA	NA	NA
AZY25775.1|1687735_1688425_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY25776.1|1688489_1689245_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25777.1|1689296_1690289_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25778.1|1690298_1691252_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25779.1|1691367_1692330_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25780.1|1693731_1694160_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25781.1|1694156_1695107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27900.1|1695400_1696123_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY25782.1|1696561_1697749_-	MFS transporter	NA	NA	NA	NA	NA
AZY25783.1|1697752_1698133_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25784.1|1699852_1700824_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25785.1|1700837_1701551_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY25786.1|1701555_1702473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY25787.1|1702579_1702876_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25788.1|1702974_1703925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	1936689	2006341	4103253	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AZY25964.1|1936689_1939347_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY25965.1|1939424_1940627_-	MFS transporter	NA	NA	NA	NA	NA
AZY25966.1|1940623_1941136_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27908.1|1941258_1941597_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY25967.1|1941972_1942923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25968.1|1943021_1943972_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25969.1|1944135_1946031_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY25970.1|1946144_1946312_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY25971.1|1946375_1946612_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY25972.1|1946980_1948180_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY25973.1|1949695_1950646_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY25974.1|1951097_1952099_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25975.1|1952271_1953129_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY25976.1|1953125_1954388_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY25977.1|1954488_1954863_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY25978.1|1954911_1956123_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY25979.1|1956207_1956978_+	spermidine synthase	NA	NA	NA	NA	NA
AZY25980.1|1957091_1957856_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27909.1|1957971_1959108_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY25981.1|1959104_1959911_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY25982.1|1961655_1962627_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY25983.1|1962783_1963296_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY25984.1|1963454_1964429_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY25985.1|1965429_1966224_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY27910.1|1966249_1967056_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY25986.1|1967166_1967757_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY25987.1|1967767_1968946_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25988.1|1969048_1969423_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY25989.1|1969675_1971007_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY25990.1|1971073_1974304_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY25991.1|1975794_1976541_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY25992.1|1976625_1977087_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY25993.1|1977124_1978183_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY25994.1|1978145_1979975_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY25995.1|1980014_1980587_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY25996.1|1982011_1982923_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY25997.1|1983151_1984474_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY25998.1|1984519_1984903_+	hypothetical protein	NA	NA	NA	NA	NA
AZY25999.1|1984833_1985469_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26000.1|1985428_1986379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26001.1|1987249_1988122_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY26002.1|1988199_1989339_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26003.1|1989688_1990954_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY26004.1|1990959_1991487_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY26005.1|1991491_1992310_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY26006.1|1992309_1993032_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY26007.1|1993053_1993368_+	ferredoxin	NA	NA	NA	NA	NA
AZY26008.1|1993364_1994534_+	CoA transferase	NA	NA	NA	NA	NA
AZY26009.1|1994564_1995440_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY26010.1|1995436_1996756_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY26011.1|1996828_1998025_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY26012.1|1998035_1999523_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26013.1|2002117_2003017_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26014.1|2003154_2004120_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26015.1|2004218_2005169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26016.1|2005212_2005404_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26017.1|2005390_2006341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2017837	2066184	4103253	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZY26029.1|2017837_2018788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26030.1|2019925_2020222_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26031.1|2020396_2021749_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY26032.1|2021891_2022908_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY27912.1|2024887_2025901_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY26033.1|2025987_2026893_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26034.1|2027049_2027394_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26035.1|2027551_2028010_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY26036.1|2028023_2030240_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY26037.1|2030236_2031298_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26038.1|2031326_2032301_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY26039.1|2032252_2033071_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY26040.1|2033083_2033692_-	peptidase S16	NA	NA	NA	NA	NA
AZY26041.1|2033866_2034262_+	VOC family protein	NA	NA	NA	NA	NA
AZY26042.1|2034280_2035720_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY26043.1|2035748_2036096_+	GFA family protein	NA	NA	NA	NA	NA
AZY26044.1|2036114_2037065_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26045.1|2037717_2038668_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26046.1|2038751_2040569_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY26047.1|2040642_2041290_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26048.1|2041302_2042232_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY26049.1|2042401_2042866_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26050.1|2043113_2043794_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26051.1|2043842_2045534_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY26052.1|2045549_2046101_-	ATPase	NA	NA	NA	NA	NA
AZY26053.1|2046097_2046469_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY26054.1|2046581_2047418_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY26055.1|2047428_2047953_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY26056.1|2048050_2048230_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY26057.1|2048359_2049391_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY26058.1|2049464_2049821_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY27913.1|2049810_2050686_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY26059.1|2050784_2051669_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26060.1|2051690_2052986_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY26061.1|2053934_2054585_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZY27914.1|2054672_2056193_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY26062.1|2056450_2058316_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY26063.1|2058312_2059263_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26064.1|2060235_2060595_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY26065.1|2060582_2062019_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY26066.1|2062015_2062669_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY26067.1|2062665_2063865_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY26068.1|2063962_2065237_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY26069.1|2065233_2066184_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2078433	2211407	4103253	tRNA,transposase,protease	Klosneuvirus(12.5%)	113	NA	NA
AZY26083.1|2078433_2079384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26084.1|2079343_2079757_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY26085.1|2080041_2080341_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27916.1|2080750_2082919_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY26086.1|2083718_2085749_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY26087.1|2085768_2085981_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY26088.1|2086258_2086798_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY26089.1|2086911_2088219_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY26090.1|2088283_2089441_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY26091.1|2089624_2090524_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY26092.1|2090542_2091847_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY26093.1|2091812_2092919_-	GTPase HflX	NA	NA	NA	NA	NA
AZY26094.1|2093006_2093243_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY26095.1|2093381_2094452_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY26096.1|2094455_2095811_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY26097.1|2095837_2096998_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY26098.1|2097000_2097639_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26099.1|2097640_2098945_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY26100.1|2098985_2100281_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY26101.1|2100287_2100794_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY26102.1|2100790_2101939_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY26103.1|2101966_2102392_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY26104.1|2102714_2105597_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY26105.1|2105689_2106445_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY26106.1|2107210_2108560_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY26107.1|2108658_2109609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26108.1|2109707_2110658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26109.1|2110731_2111205_+	RidA family protein	NA	NA	NA	NA	NA
AZY26110.1|2111230_2112439_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY26111.1|2112435_2113209_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY26112.1|2113208_2113832_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY26113.1|2113997_2114258_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY26114.1|2114561_2115143_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26115.1|2115209_2115464_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY26116.1|2115450_2118075_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY26117.1|2118146_2118965_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26118.1|2118961_2119567_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY26119.1|2119604_2120738_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZY27917.1|2122453_2122828_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26120.1|2122925_2124200_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26121.1|2124203_2125781_-	lipoprotein	NA	NA	NA	NA	NA
AZY26122.1|2126687_2128043_-	amidase	NA	NA	NA	NA	NA
AZY26123.1|2128039_2129674_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY26124.1|2129666_2130497_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY26125.1|2130514_2131459_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY26126.1|2131511_2133086_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26127.1|2133133_2133484_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26128.1|2134956_2135913_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26129.1|2136062_2137400_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26130.1|2137404_2138661_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY26131.1|2138856_2139903_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY26132.1|2139960_2140329_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY26133.1|2140459_2141332_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY26134.1|2141408_2142311_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26135.1|2143367_2144585_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY26136.1|2145858_2146809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26137.1|2147009_2147819_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY26138.1|2147943_2148894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26139.1|2148890_2149784_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY26140.1|2149908_2150103_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY26141.1|2150102_2150444_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY26142.1|2150453_2152316_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY26143.1|2152445_2152958_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY26144.1|2152960_2153284_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY26145.1|2153285_2153696_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY26146.1|2153733_2154945_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY26147.1|2154962_2155475_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY26148.1|2155690_2156182_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY26149.1|2156434_2158471_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY26150.1|2158548_2159751_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY26151.1|2159801_2160530_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY26152.1|2162087_2163038_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26153.1|2163608_2163821_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26154.1|2163838_2164570_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26155.1|2164604_2165246_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY26156.1|2165238_2165955_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY26157.1|2168119_2168896_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY26158.1|2168917_2170075_-	thiolase	NA	NA	NA	NA	NA
AZY26159.1|2170071_2170503_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26160.1|2170499_2171303_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY26161.1|2171316_2171772_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY26162.1|2171784_2172756_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26163.1|2172821_2174045_-	CoA transferase	NA	NA	NA	NA	NA
AZY26164.1|2174272_2175223_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26165.1|2175346_2177800_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY26166.1|2177988_2179293_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY26167.1|2179397_2180051_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY26168.1|2180053_2181364_-	trigger factor	NA	NA	NA	NA	NA
AZY26169.1|2181542_2182121_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY26170.1|2182232_2182433_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY26171.1|2182778_2183345_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY26172.1|2183428_2183632_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY26173.1|2183938_2184259_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26174.1|2184300_2184582_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26175.1|2184656_2185913_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY26176.1|2186295_2186625_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY26177.1|2188195_2189017_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY26178.1|2189016_2190156_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY26179.1|2190162_2191059_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY26180.1|2191055_2192981_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY26181.1|2193340_2195953_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY26182.1|2196005_2198306_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY26183.1|2198302_2199511_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY26184.1|2199772_2200147_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26185.1|2200143_2201094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26186.1|2201192_2203187_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY26187.1|2203246_2204212_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY26188.1|2204201_2207063_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY26189.1|2207065_2207572_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY26190.1|2207676_2208885_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY26191.1|2208886_2209825_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26192.1|2209986_2210460_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY26193.1|2210456_2211407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2505054	2563298	4103253	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZY26440.1|2505054_2506005_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26441.1|2506484_2507141_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY26442.1|2507155_2508823_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY26443.1|2508825_2509455_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26444.1|2509666_2510761_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26445.1|2510905_2511718_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY26446.1|2511721_2513425_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY26447.1|2513475_2514606_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY26448.1|2514792_2515869_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY27931.1|2515950_2516601_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY26449.1|2516615_2518049_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY26450.1|2518302_2519121_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26451.1|2519117_2519822_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY26452.1|2520721_2521837_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26453.1|2521870_2522245_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26454.1|2522267_2523425_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY26455.1|2523437_2523671_-	lipoprotein	NA	NA	NA	NA	NA
AZY26456.1|2524305_2527275_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY26457.1|2527289_2527499_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY26458.1|2527650_2528280_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26459.1|2528276_2530394_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY26460.1|2530390_2531071_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY26461.1|2531067_2531628_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY26462.1|2531634_2532732_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY26463.1|2532869_2533478_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY26464.1|2533474_2534767_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY26465.1|2534780_2535323_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY26466.1|2535332_2536169_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY26467.1|2536202_2537264_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY26468.1|2537305_2538358_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY26469.1|2538373_2538676_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26470.1|2538817_2539768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26471.1|2539946_2541641_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY26472.1|2541637_2542723_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY26473.1|2542770_2543670_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26474.1|2543680_2544325_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY26475.1|2545346_2548589_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY26476.1|2548599_2549697_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY26477.1|2549959_2550943_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY26478.1|2551041_2551992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26479.1|2552090_2553041_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26480.1|2553050_2553740_-	VIT family protein	NA	NA	NA	NA	NA
AZY26481.1|2553799_2554237_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY26482.1|2554282_2555176_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY26483.1|2555223_2556396_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY26484.1|2556392_2557547_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY26485.1|2557743_2558094_-	RnfH family protein	NA	NA	NA	NA	NA
AZY26486.1|2558083_2558518_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY26487.1|2558534_2559485_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26488.1|2559632_2560100_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY26489.1|2560080_2561238_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY26490.1|2561303_2562230_-	paraslipin	NA	NA	NA	NA	NA
AZY26491.1|2562347_2563298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2605578	2672078	4103253	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY26530.1|2605578_2606529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26531.1|2606898_2607471_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY26532.1|2607473_2608484_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY26533.1|2608476_2608977_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY26534.1|2608987_2609329_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY26535.1|2609340_2610132_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY26536.1|2610148_2610418_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY26537.1|2610440_2611229_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY26538.1|2611275_2612292_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY26539.1|2612508_2613951_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY26540.1|2614129_2615749_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY26541.1|2615869_2617690_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY26542.1|2617768_2619301_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY26543.1|2619334_2620981_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY26544.1|2621050_2622073_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY26545.1|2622090_2623224_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZY26546.1|2623226_2623916_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY26547.1|2623915_2624701_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY26548.1|2624744_2625509_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY26549.1|2625547_2626969_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY26550.1|2627034_2627739_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY26551.1|2627786_2628206_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY26552.1|2628218_2628626_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY27935.1|2628809_2629520_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY26553.1|2629646_2629937_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY26554.1|2629954_2630437_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY26555.1|2634942_2636097_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY26556.1|2636402_2637419_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY26557.1|2637665_2638454_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26558.1|2638520_2639201_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY26559.1|2639197_2639968_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY26560.1|2640066_2641017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26561.1|2641072_2641990_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY26562.1|2642000_2643179_-	mandelate racemase	NA	NA	NA	NA	NA
AZY26563.1|2643198_2644194_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26564.1|2645782_2646391_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY26565.1|2646378_2647419_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY26566.1|2647436_2648399_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26567.1|2648395_2649589_-	CoA transferase	NA	NA	NA	NA	NA
AZY26568.1|2649585_2650383_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY26569.1|2650408_2651395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26570.1|2651413_2653453_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY27936.1|2653654_2654335_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26571.1|2654348_2655260_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY26572.1|2655256_2655835_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY26573.1|2655973_2656879_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26574.1|2656886_2660306_+	nuclease	NA	NA	NA	NA	NA
AZY26575.1|2660293_2662894_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY26576.1|2663849_2664482_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26577.1|2664875_2665634_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26578.1|2665630_2666833_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY26579.1|2667020_2667971_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26580.1|2668878_2670024_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY27937.1|2670043_2670766_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY26581.1|2670882_2671062_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26582.1|2671127_2672078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2876190	2957466	4103253	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZY26746.1|2876190_2877141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26747.1|2877137_2878040_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26748.1|2878127_2878886_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY26749.1|2878898_2880047_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY26750.1|2880087_2881515_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY26751.1|2881744_2882959_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY26752.1|2883004_2885875_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY26753.1|2888285_2888774_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY26754.1|2888899_2891596_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY26755.1|2891750_2894033_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY26756.1|2894196_2894829_+	fimbrial protein	NA	NA	NA	NA	NA
AZY26757.1|2894927_2895878_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY26758.1|2895924_2896479_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY26759.1|2896546_2897392_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY26760.1|2897461_2898430_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY26761.1|2898429_2900226_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26762.1|2902125_2906052_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY26763.1|2906342_2906519_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26764.1|2906787_2910018_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY26765.1|2910299_2911127_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY26766.1|2911160_2911856_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY26767.1|2911848_2913129_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY26768.1|2913138_2914116_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27953.1|2914097_2915798_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY26769.1|2915900_2917004_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY26770.1|2917034_2917790_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY26771.1|2917796_2919317_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY26772.1|2919359_2919662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26773.1|2919658_2920291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26774.1|2920369_2922235_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY26775.1|2922231_2923047_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY26776.1|2923054_2924170_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26777.1|2925074_2925953_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY26778.1|2925952_2926777_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY26779.1|2926944_2927895_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26780.1|2928077_2930957_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY26781.1|2930938_2931715_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY26782.1|2931807_2933271_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY26783.1|2933267_2933639_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY26784.1|2933656_2934970_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26785.1|2935006_2935465_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY26786.1|2935577_2936528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26787.1|2936524_2937538_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY26788.1|2937677_2938664_+	homoserine kinase	NA	NA	NA	NA	NA
AZY26789.1|2938707_2939508_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26790.1|2940310_2941261_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26791.1|2941412_2942015_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26792.1|2942033_2942666_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY26793.1|2942903_2944790_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY26794.1|2944808_2945651_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY26795.1|2945647_2947006_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY26796.1|2947226_2948021_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY26797.1|2948251_2949745_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY26798.1|2949980_2952062_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY26799.1|2952256_2953297_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY26800.1|2953431_2954448_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY26801.1|2954469_2955327_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY27954.1|2955371_2956148_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY26802.1|2956515_2957466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	2966534	3015472	4103253	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY26810.1|2966534_2966948_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY26811.1|2966988_2967306_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY26812.1|2967390_2968107_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27955.1|2968370_2969792_+	siroheme synthase	NA	NA	NA	NA	NA
AZY26813.1|2969858_2972606_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY26814.1|2972938_2973955_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY27956.1|2974290_2974932_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY26815.1|2975022_2976459_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY26816.1|2976616_2977690_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY26817.1|2977686_2978823_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY26818.1|2978967_2979312_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY26819.1|2979378_2981259_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY26820.1|2981308_2982244_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY26821.1|2982576_2983593_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY26822.1|2984530_2985958_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY26823.1|2985954_2986977_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY26824.1|2986966_2987440_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY26825.1|2987565_2988468_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZY26826.1|2988464_2990108_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY27957.1|2990104_2991112_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY26827.1|2991942_2992959_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY26828.1|2993058_2993691_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY26829.1|2993699_2994089_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY26830.1|2994141_2995194_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY26831.1|2996057_2997764_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY26832.1|2997837_2998338_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY26833.1|2998352_3000410_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY26834.1|3000436_3000730_-	response regulator	NA	NA	NA	NA	NA
AZY26835.1|3000831_3001779_-	motility protein MotB	NA	NA	NA	NA	NA
AZY26836.1|3001791_3002667_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY26837.1|3002787_3003348_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY26838.1|3003382_3003706_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY26839.1|3004141_3004879_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY26840.1|3005177_3006128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26841.1|3006371_3006635_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY26842.1|3006708_3006990_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26843.1|3007006_3007867_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY26844.1|3007863_3008199_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26845.1|3008252_3008903_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY26846.1|3010583_3011528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26847.1|3011573_3011891_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26848.1|3011893_3012832_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY26849.1|3013009_3013495_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY26850.1|3013513_3014062_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY26851.1|3014338_3015472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	3027079	3099573	4103253	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY26860.1|3027079_3028030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26861.1|3028072_3029248_+	flagellin FliC	NA	NA	NA	NA	NA
AZY26862.1|3029469_3031260_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY26863.1|3031272_3032934_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY26864.1|3032946_3035652_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY26865.1|3035944_3037699_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY26866.1|3037695_3038322_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY26867.1|3038318_3039170_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY26868.1|3039245_3041360_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY26869.1|3041510_3042161_+	SCO family protein	NA	NA	NA	NA	NA
AZY26870.1|3042306_3042558_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY26871.1|3042627_3044010_-	multidrug transporter	NA	NA	NA	NA	NA
AZY26872.1|3044006_3047186_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY27959.1|3047993_3048911_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26873.1|3048962_3049694_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY26874.1|3049753_3050326_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY26875.1|3051834_3052851_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY26876.1|3052988_3054038_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY26877.1|3054142_3055093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26878.1|3055188_3055914_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY26879.1|3056124_3056505_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY26880.1|3056810_3057683_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY26881.1|3057690_3058071_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26882.1|3058224_3059499_-	radical SAM protein	NA	NA	NA	NA	NA
AZY27960.1|3060986_3061895_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY26883.1|3062692_3063757_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY26884.1|3065593_3066628_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY26885.1|3066817_3067459_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY26886.1|3067541_3069368_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY26887.1|3069611_3070541_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY26888.1|3070540_3071290_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY26889.1|3071361_3072276_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY26890.1|3072295_3073441_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY26891.1|3073501_3074413_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY26892.1|3074493_3075444_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26893.1|3075542_3076127_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY26894.1|3076161_3077151_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY26895.1|3077147_3078089_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY26896.1|3078085_3079306_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY26897.1|3079348_3079663_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY26898.1|3079854_3080214_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY26899.1|3080215_3081946_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY26900.1|3082118_3082790_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY26901.1|3082804_3084133_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY26902.1|3084129_3085029_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY26903.1|3085115_3086201_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY26904.1|3086193_3087327_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY26905.1|3087326_3090008_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY26906.1|3090378_3090960_+	OmpA family protein	NA	NA	NA	NA	NA
AZY26907.1|3091037_3091811_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY26908.1|3091807_3092485_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY26909.1|3092700_3093882_+	MFS transporter	NA	NA	NA	NA	NA
AZY26910.1|3094358_3094616_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26911.1|3094654_3094837_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY26912.1|3094866_3095817_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27961.1|3095946_3096339_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY26913.1|3096615_3097527_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY26914.1|3097651_3098626_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26915.1|3098622_3099573_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	3113080	3166598	4103253	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZY26926.1|3113080_3114031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26927.1|3114143_3114395_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26928.1|3114588_3114804_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26929.1|3114900_3116019_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY26930.1|3116138_3116351_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26931.1|3116510_3116732_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26932.1|3116784_3117735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26933.1|3118911_3120282_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY26934.1|3120314_3121106_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26935.1|3121118_3122174_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26936.1|3122199_3123075_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26937.1|3123180_3123429_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26938.1|3123463_3124918_-	carboxylase	NA	NA	NA	NA	NA
AZY26939.1|3124914_3125436_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY26940.1|3125464_3126817_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY26941.1|3127040_3129929_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY26942.1|3132073_3133375_+	phospholipase	NA	NA	NA	NA	NA
AZY26943.1|3133389_3134106_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY26944.1|3134387_3135068_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY26945.1|3135079_3135247_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26946.1|3135355_3135508_-	hypothetical protein	NA	NA	NA	NA	NA
AZY26947.1|3135595_3136255_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY26948.1|3136635_3138486_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY26949.1|3138482_3139433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26950.1|3140596_3142312_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY26951.1|3142322_3142814_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY26952.1|3142886_3143903_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY26953.1|3144070_3144850_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY26954.1|3144868_3145396_-	lipoprotein	NA	NA	NA	NA	NA
AZY26955.1|3145394_3145601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY26956.1|3145689_3145959_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY26957.1|3146049_3148209_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY26958.1|3148329_3149049_+	lipoprotein	NA	NA	NA	NA	NA
AZY26959.1|3149045_3149996_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY26960.1|3150136_3151354_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY26961.1|3151347_3151959_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY26962.1|3152592_3153570_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY26963.1|3153713_3154460_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY26964.1|3154481_3154928_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY26965.1|3155715_3157947_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY26966.1|3157969_3158770_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY26967.1|3159051_3160284_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY26968.1|3160394_3161384_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26969.1|3161414_3162803_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY26970.1|3164401_3165385_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY26971.1|3165581_3166598_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	3231056	3304218	4103253	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY27025.1|3231056_3232007_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27026.1|3232003_3233023_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY27027.1|3233032_3235741_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY27028.1|3235888_3236545_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY27029.1|3236643_3237594_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27030.1|3237699_3238635_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY27031.1|3238834_3240529_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY27032.1|3240563_3241490_+	VOC family protein	NA	NA	NA	NA	NA
AZY27965.1|3241558_3242656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27033.1|3242674_3243538_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY27034.1|3243549_3244332_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY27035.1|3244328_3245447_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY27036.1|3245443_3246976_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY27037.1|3247016_3248024_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY27038.1|3248168_3248891_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27039.1|3248906_3249929_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY27040.1|3250245_3250980_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27041.1|3251064_3252810_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY27042.1|3252806_3253559_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY27043.1|3253603_3254560_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY27044.1|3254648_3255215_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27045.1|3255222_3256083_-	aminotransferase	NA	NA	NA	NA	NA
AZY27046.1|3256112_3256856_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY27047.1|3256872_3257556_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27048.1|3258393_3259308_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY27049.1|3259372_3260281_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27050.1|3260371_3261796_-	protein CyaE	NA	NA	NA	NA	NA
AZY27051.1|3261797_3263120_-	protein CyaD	NA	NA	NA	NA	NA
AZY27052.1|3263116_3265255_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY27053.1|3265332_3270453_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY27966.1|3270639_3270819_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27054.1|3270901_3271489_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY27055.1|3271504_3272986_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY27056.1|3273040_3274894_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27057.1|3275156_3276494_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY27058.1|3276528_3278526_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY27059.1|3278543_3280592_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY27060.1|3280722_3281589_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27061.1|3281857_3282823_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY27062.1|3282937_3284086_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY27063.1|3284510_3284822_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY27064.1|3284855_3285116_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY27065.1|3285265_3286399_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY27066.1|3286469_3287606_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY27067.1|3287771_3288566_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY27068.1|3288628_3289072_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY27069.1|3289187_3290138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27070.1|3290124_3290313_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27071.1|3290260_3290668_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY27072.1|3290740_3292936_+	DNA methylase	NA	NA	NA	NA	NA
AZY27073.1|3293157_3294108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27074.1|3294067_3294592_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY27075.1|3294723_3295695_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27967.1|3295814_3298259_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY27076.1|3298274_3298865_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY27077.1|3299108_3300059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27078.1|3300216_3301482_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY27079.1|3301515_3302613_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY27080.1|3303267_3304218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	3315505	3415618	4103253	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZY27091.1|3315505_3316456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27092.1|3317187_3317565_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY27093.1|3317549_3318251_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27094.1|3318394_3319087_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY27095.1|3319086_3320190_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY27096.1|3320299_3322672_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY27097.1|3322668_3324228_+	chaperone SurA	NA	NA	NA	NA	NA
AZY27098.1|3324252_3325050_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY27099.1|3325081_3326227_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY27100.1|3326331_3327774_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY27968.1|3327776_3328865_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27101.1|3331143_3332094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27102.1|3332080_3332299_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27103.1|3333223_3333781_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY27104.1|3333756_3334107_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27105.1|3334275_3335070_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY27106.1|3335066_3336116_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY27107.1|3336115_3336805_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY27108.1|3336891_3337389_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY27109.1|3337420_3338737_-	protein TolB	NA	NA	NA	NA	NA
AZY27110.1|3338753_3339728_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY27111.1|3339764_3340223_-	protein TolR	NA	NA	NA	NA	NA
AZY27112.1|3340222_3340903_-	protein TolQ	NA	NA	NA	NA	NA
AZY27113.1|3340905_3341334_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY27114.1|3341386_3343117_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY27115.1|3343182_3343755_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY27116.1|3343735_3344422_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY27117.1|3344777_3345449_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY27118.1|3345455_3345656_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27119.1|3345998_3346280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27120.1|3346276_3346810_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY27121.1|3346791_3347343_-	lysozyme	NA	NA	NA	NA	NA
AZY27122.1|3347321_3347564_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27123.1|3347568_3348381_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27124.1|3348380_3348644_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27125.1|3348862_3349279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27126.1|3349283_3353240_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY27127.1|3353232_3353622_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY27128.1|3353618_3354152_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY27129.1|3354219_3354579_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27130.1|3354588_3357201_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY27131.1|3357226_3357517_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY27132.1|3357534_3357864_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY27133.1|3357873_3358392_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY27134.1|3358646_3359147_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY27135.1|3359154_3359577_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27136.1|3359573_3359972_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY27137.1|3359968_3360364_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY27138.1|3360363_3360564_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27139.1|3360565_3361048_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY27140.1|3361110_3361362_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27141.1|3361371_3362019_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY27142.1|3362036_3362987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27143.1|3363415_3364018_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY27144.1|3364140_3364383_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY27969.1|3364388_3365444_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY27145.1|3365472_3366891_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY27146.1|3366893_3368171_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY27147.1|3368157_3368607_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY27148.1|3369282_3370233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27149.1|3370250_3370472_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27150.1|3370486_3371185_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27151.1|3371177_3371498_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27970.1|3371977_3372589_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY27152.1|3372654_3372867_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27153.1|3373118_3374069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27154.1|3374167_3375241_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27155.1|3375408_3376203_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY27156.1|3376242_3376767_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY27157.1|3376759_3378502_-	sulfite reductase	NA	NA	NA	NA	NA
AZY27158.1|3378711_3379470_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY27159.1|3379472_3380180_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY27160.1|3380196_3381078_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27161.1|3381088_3381847_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27971.1|3381815_3382571_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27162.1|3382640_3384059_+	amidase	NA	NA	NA	NA	NA
AZY27163.1|3384080_3384731_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY27164.1|3384864_3385200_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY27165.1|3385288_3386239_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27166.1|3386315_3388136_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY27167.1|3388140_3389214_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY27168.1|3389336_3390305_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY27169.1|3390378_3391290_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY27170.1|3391308_3391881_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY27171.1|3391961_3392510_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY27172.1|3392509_3394099_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY27173.1|3394168_3394408_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY27174.1|3394448_3395480_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY27175.1|3395539_3396721_-	monooxygenase	NA	NA	NA	NA	NA
AZY27176.1|3396817_3397270_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27177.1|3397279_3398620_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY27178.1|3398936_3399974_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27179.1|3400355_3400715_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27972.1|3400798_3401740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27180.1|3401814_3402765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27181.1|3403058_3404153_+	porin	NA	NA	NA	NA	NA
AZY27182.1|3404234_3405116_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY27183.1|3405137_3405977_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY27184.1|3406052_3407570_+	peptidase	NA	NA	NA	NA	NA
AZY27185.1|3407666_3408767_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY27186.1|3408783_3409206_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY27187.1|3409228_3409441_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY27188.1|3409487_3410408_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY27973.1|3410671_3411340_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27189.1|3411342_3411672_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY27190.1|3411878_3413312_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY27191.1|3413323_3413707_-	thioredoxin	NA	NA	NA	NA	NA
AZY27192.1|3413768_3414569_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27193.1|3414667_3415618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025387	Bordetella pertussis strain E365 chromosome, complete genome	4103253	4002321	4067233	4103253	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY27722.1|4002321_4002807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27723.1|4003025_4004006_+	protein BugT	NA	NA	NA	NA	NA
AZY27724.1|4004272_4005082_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY27725.1|4005121_4005802_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY27726.1|4005795_4006254_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY27727.1|4006265_4006628_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY27728.1|4006710_4007394_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY27729.1|4007449_4007758_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY27730.1|4007776_4008091_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY27731.1|4008087_4010562_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY27732.1|4010569_4011961_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY27733.1|4011957_4012143_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY27734.1|4012121_4012823_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY27735.1|4012819_4013641_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY27995.1|4013621_4014746_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY27736.1|4014738_4015758_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY27737.1|4015963_4016998_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY27996.1|4017098_4017890_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY27738.1|4017972_4018347_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY27739.1|4018324_4019734_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY27740.1|4019726_4021109_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY27741.1|4021443_4023048_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY27742.1|4023083_4024097_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY27743.1|4024107_4025034_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY27744.1|4025424_4026375_-|transposase	IS481 family transposase IS481	transposase	NA	NA	NA	NA
AZY27745.1|4026544_4027771_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY27746.1|4027970_4028837_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY27747.1|4028829_4029792_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY27748.1|4029892_4030843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27749.1|4030941_4031892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27750.1|4031990_4032941_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY27751.1|4032937_4034431_-	RND transporter	NA	NA	NA	NA	NA
AZY27752.1|4034427_4037535_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY27753.1|4037531_4040600_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY27754.1|4040596_4041847_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY27755.1|4042027_4042789_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY27756.1|4042821_4043472_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY27757.1|4043474_4044314_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY27758.1|4044554_4045298_+	hypothetical protein	NA	NA	NA	NA	NA
AZY27759.1|4045380_4045728_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY27760.1|4045825_4046668_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY27761.1|4046712_4047600_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY27762.1|4047626_4047815_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY27763.1|4047912_4049370_+	MFS transporter	NA	NA	NA	NA	NA
AZY27764.1|4049356_4050883_+	glycerol kinase	NA	NA	NA	NA	NA
AZY27765.1|4050901_4051369_-	hypothetical protein	NA	NA	NA	NA	NA
AZY27766.1|4051368_4052391_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY27767.1|4052511_4053252_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY27768.1|4053306_4054407_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27769.1|4054408_4055599_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY27770.1|4055718_4056735_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY27771.1|4057053_4057725_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY27772.1|4057721_4058630_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY27773.1|4058841_4059489_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY27774.1|4063340_4064417_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY27775.1|4064427_4065237_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY27776.1|4065326_4066100_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY27777.1|4066282_4067233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
