The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	0	122073	4106497	transposase,protease,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZW95078.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZW95079.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZW95080.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZW95081.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW95082.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZW95083.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZW95084.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZW95085.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZW95086.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZW95087.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZW95088.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZW95089.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZW95090.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZW95091.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZW98467.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZW95092.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95093.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZW95094.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW95095.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95096.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZW95097.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95098.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZW95099.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZW98468.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95100.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95101.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW95102.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95103.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZW95104.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZW95105.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZW95106.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZW95107.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW95108.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZW95109.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZW95110.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZW95111.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZW95112.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95113.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95114.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZW95115.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95116.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZW95117.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZW95118.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95119.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZW95120.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZW95121.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZW95122.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW95123.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW95124.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95125.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95126.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW95127.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW95128.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95129.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95130.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZW95131.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZW95132.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZW95133.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW95134.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95135.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95136.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZW95137.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZW95138.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW95139.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZW95140.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98469.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95141.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZW95142.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98470.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95143.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZW95144.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZW95145.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW95146.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZW95147.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZW95148.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZW95149.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZW95150.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZW95151.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW95152.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZW98471.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZW95153.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZW95154.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95155.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZW95156.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZW95157.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW95158.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZW95159.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95160.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW95161.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZW95162.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZW95163.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZW95164.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZW95165.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZW95166.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZW95167.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZW95168.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZW95169.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95170.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZW95171.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZW95172.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZW95173.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW98472.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZW95174.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98473.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW95175.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW95176.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW95177.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95178.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZW95179.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZW95180.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	232666	307010	4106497	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
AZW95291.1|232666_233617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95292.1|233613_234804_-	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZW95293.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZW95294.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZW98480.1|237071_238088_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW95295.1|238369_238858_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZW95296.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZW95297.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZW95298.1|241791_242667_-	thiazole synthase	NA	NA	NA	NA	NA
AZW95299.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AZW95300.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZW95301.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZW95302.1|249593_250544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95303.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZW95304.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZW95305.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
AZW95306.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW95307.1|254032_255883_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZW95308.1|255938_256697_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW98481.1|256724_258197_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZW95309.1|258231_259011_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZW95310.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95311.1|259865_260639_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZW95312.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95313.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZW95314.1|264542_267164_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95315.1|268091_268550_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95316.1|268828_271072_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW95317.1|271268_273293_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZW95318.1|273416_274379_-	immunogenic protein	NA	NA	NA	NA	NA
AZW95319.1|274590_275730_+	alanine racemase	NA	NA	NA	NA	NA
AZW95320.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95321.1|276913_278104_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZW95322.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZW95323.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZW98482.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AZW95324.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW95325.1|286218_287169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95326.1|287192_288251_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW95327.1|288325_288700_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95328.1|289254_290205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95329.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW95330.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW98483.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95331.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
AZW95332.1|296833_297625_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95333.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZW95334.1|300291_301407_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZW95335.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZW95336.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZW95337.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZW95338.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZW95339.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZW95340.1|306059_307010_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	486899	607268	4106497	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
AZW95502.1|486899_489275_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZW95503.1|489373_490324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95504.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95505.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZW95506.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZW95507.1|494549_495362_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZW95508.1|495398_495725_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZW95509.1|495729_496290_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZW95510.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95511.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95512.1|498552_499929_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZW95513.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZW98492.1|502319_502709_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98493.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95514.1|503170_504121_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95515.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZW95516.1|505166_506039_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZW95517.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
AZW95518.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZW95519.1|509254_509719_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZW95520.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZW95521.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZW95522.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZW95523.1|512643_513252_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZW95524.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZW95525.1|514343_515558_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZW95526.1|517509_518460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98494.1|519893_521180_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95527.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZW95528.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZW95529.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZW95530.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
AZW95531.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW95532.1|526322_527207_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW95533.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZW95534.1|529120_530119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95535.1|530230_531376_+	transporter	NA	NA	NA	NA	NA
AZW95536.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
AZW95537.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW95538.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95539.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW98495.1|536397_537225_-	copper resistance protein B	NA	NA	NA	NA	NA
AZW95540.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZW95541.1|539089_539587_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95542.1|539883_540834_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95543.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95544.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95545.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW95546.1|546690_547353_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95547.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZW95548.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95549.1|549272_550094_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95550.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZW95551.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95552.1|553383_554418_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZW95553.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW95554.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW95555.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZW95556.1|558081_558987_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW95557.1|559030_560164_+	peptidase	NA	NA	NA	NA	NA
AZW95558.1|560292_561243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95559.1|561341_563411_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZW95560.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
AZW95561.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZW98496.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95562.1|568081_568504_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZW95563.1|568513_569914_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZW95564.1|569956_570862_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZW95565.1|570960_572502_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZW95566.1|572536_573076_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZW95567.1|573088_573559_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZW95568.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZW95569.1|574055_574937_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZW98497.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95570.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95571.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95572.1|579266_581039_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZW95573.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZW95574.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZW95575.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZW95576.1|583519_584470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95577.1|584482_585418_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZW95578.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZW95579.1|586313_587483_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZW95580.1|587479_588769_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95581.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZW95582.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZW95583.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW95584.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZW95585.1|592580_593144_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZW95586.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZW95587.1|594190_594979_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZW95588.1|595154_596144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95589.1|597900_598851_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95590.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95591.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZW95592.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW95593.1|602998_603517_-	flavin reductase	NA	NA	NA	NA	NA
AZW95594.1|603546_604179_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZW95595.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZW95596.1|604906_606127_-	MFS transporter	NA	NA	NA	NA	NA
AZW95597.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	611682	675515	4106497	transposase,tRNA	Pandoravirus(12.5%)	49	NA	NA
AZW98499.1|611682_612699_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW95601.1|612970_613597_-	aminotransferase	NA	NA	NA	NA	NA
AZW95602.1|613652_614780_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZW95603.1|614785_620503_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZW95604.1|620786_621002_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95605.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZW95606.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZW95607.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95608.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW95609.1|626613_627531_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW95610.1|629891_630113_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98500.1|630443_631460_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW95611.1|631544_631796_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZW95612.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZW95613.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZW95614.1|633717_635481_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZW95615.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW95616.1|638006_639431_-	ATP-binding protein	NA	NA	NA	NA	NA
AZW95617.1|639430_640132_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZW95618.1|641636_642587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95619.1|642655_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95620.1|643658_644339_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZW95621.1|644476_644869_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW98501.1|644976_645993_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW95622.1|646232_647018_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZW95623.1|647112_648522_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZW95624.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZW95625.1|649353_650124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW95626.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZW95627.1|650630_651581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95628.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZW95629.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95630.1|658311_658680_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95631.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95632.1|659613_660702_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95633.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95634.1|662740_663130_-	DNA-binding protein	NA	NA	NA	NA	NA
AZW95635.1|663133_663916_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95636.1|663949_664702_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW95637.1|665010_666150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95638.1|666146_666938_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZW95639.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZW95640.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW95641.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW95642.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW95643.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95644.1|671376_672711_+	CoA ligase	NA	NA	NA	NA	NA
AZW95645.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
AZW98502.1|674564_675515_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	694426	771735	4106497	integrase,transposase,protease,tRNA	Bacillus_phage(20.0%)	59	741563:741581	761451:761469
AZW95663.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95664.1|695475_696951_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZW95665.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95666.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95667.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98503.1|703758_705042_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZW95668.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZW95669.1|706687_707191_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZW95670.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZW95671.1|708239_708677_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZW95672.1|708800_709469_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZW95673.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
AZW95674.1|711406_712681_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZW95675.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZW95676.1|713719_715090_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95677.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW95678.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZW95679.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZW95680.1|719313_720468_+	glycosyl transferase	NA	NA	NA	NA	NA
AZW95681.1|720464_721595_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZW95682.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW95683.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZW95684.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95685.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW95686.1|726971_727682_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW95687.1|727678_729001_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZW95688.1|729080_731042_+	sulfatase	NA	NA	NA	NA	NA
AZW95689.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZW95690.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZW95691.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95692.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZW95693.1|735209_736889_-	oxidoreductase	NA	NA	NA	NA	NA
AZW95694.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW95695.1|738034_738862_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZW95696.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZW95697.1|740743_741343_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZW95698.1|741391_742291_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZW98504.1|742517_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZW95699.1|743572_744187_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZW95700.1|744264_744912_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZW95701.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZW95702.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZW95703.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZW95704.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
AZW98505.1|749660_749801_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZW95705.1|749797_752917_+	restriction endonuclease	NA	NA	NA	NA	NA
AZW95706.1|752918_755870_+	site-specific DNA-methyltransferase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZW95707.1|755885_757097_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZW95708.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95709.1|757280_758231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95710.1|758247_758742_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZW95711.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95712.1|759027_760458_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZW95713.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
AZW95714.1|761607_762558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZW95715.1|762976_765541_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW95716.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95717.1|767771_769343_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZW95718.1|770784_771735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1027073	1120061	4106497	transposase	Bacillus_virus(27.27%)	87	NA	NA
AZW95922.1|1027073_1028024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95923.1|1028126_1028789_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95924.1|1028891_1029302_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95925.1|1029406_1030408_+	amidase	NA	NA	NA	NA	NA
AZW95926.1|1030410_1031607_+	CoA transferase	NA	NA	NA	NA	NA
AZW95927.1|1031627_1032431_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW95928.1|1032511_1032808_+	histidine kinase	NA	NA	NA	NA	NA
AZW95929.1|1032838_1033402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98524.1|1033442_1034300_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW95930.1|1034307_1035057_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZW95931.1|1035078_1035951_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95932.1|1035979_1036759_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZW95933.1|1036792_1037590_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95934.1|1039041_1040214_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZW95935.1|1040244_1040637_+	RidA family protein	NA	NA	NA	NA	NA
AZW95936.1|1040630_1041491_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW95937.1|1041494_1042457_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW98525.1|1043233_1043923_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZW95938.1|1044783_1045734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95939.1|1046083_1046953_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95940.1|1047023_1047719_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZW95941.1|1047708_1048218_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZW95942.1|1048214_1049435_+	MFS transporter	NA	NA	NA	NA	NA
AZW95943.1|1049382_1050285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95944.1|1051171_1052458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95945.1|1052496_1053870_+	amidase	NA	NA	NA	NA	NA
AZW95946.1|1053908_1054610_-	riboflavin synthase	NA	NA	NA	NA	NA
AZW95947.1|1054908_1055898_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95948.1|1055998_1056460_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW95949.1|1056475_1057024_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZW95950.1|1057165_1058641_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZW95951.1|1058746_1059838_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZW95952.1|1059841_1060624_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95953.1|1060633_1061422_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZW95954.1|1062547_1062982_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW95955.1|1062978_1063989_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW95956.1|1064032_1064959_-	VOC family protein	NA	NA	NA	NA	NA
AZW95957.1|1065245_1065614_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZW98526.1|1065830_1066781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98527.1|1066762_1069252_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZW95958.1|1069300_1069993_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZW95959.1|1070065_1071265_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW95960.1|1071282_1072188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95961.1|1072303_1073233_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW98528.1|1073258_1074605_+	MFS transporter	NA	NA	NA	NA	NA
AZW98529.1|1074632_1075382_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZW95962.1|1075395_1076178_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW95963.1|1076370_1077321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95964.1|1077382_1078528_-	porin	NA	NA	NA	NA	NA
AZW95965.1|1079004_1079841_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZW95966.1|1079910_1080876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95967.1|1080872_1081823_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95968.1|1081809_1082004_-	hypothetical protein	NA	NA	NA	NA	NA
AZW95969.1|1082208_1082751_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95970.1|1083786_1084737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95971.1|1084978_1085347_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95972.1|1085392_1086517_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98530.1|1087651_1088392_-	oxidoreductase	NA	NA	NA	NA	NA
AZW95973.1|1088495_1089116_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95974.1|1089219_1090170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95975.1|1090166_1092275_-	AsmA family protein	NA	NA	NA	NA	NA
AZW95976.1|1092419_1093079_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZW95977.1|1093110_1093575_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZW95978.1|1093850_1094036_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95979.1|1094087_1094840_-	DNA-binding protein	NA	NA	NA	NA	NA
AZW95980.1|1094846_1096109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95981.1|1096150_1097389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95982.1|1098466_1099594_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZW95983.1|1099604_1100432_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZW95984.1|1100418_1101285_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZW95985.1|1102651_1103056_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98531.1|1103418_1104330_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW95986.1|1104344_1105055_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW95987.1|1105051_1106296_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW95988.1|1106297_1106732_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW95989.1|1106760_1107066_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW95990.1|1106959_1107178_+	hypothetical protein	NA	NA	NA	NA	NA
AZW95991.1|1107164_1108115_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95992.1|1108171_1109320_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZW95993.1|1109400_1110351_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW95994.1|1110882_1111680_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW95995.1|1111727_1112381_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW95996.1|1112337_1113426_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZW95997.1|1113590_1115816_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZW95998.1|1118093_1118990_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZW95999.1|1118878_1119124_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96000.1|1119110_1120061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1150447	1221418	4106497	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZW96030.1|1150447_1151398_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96031.1|1151454_1152567_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZW96032.1|1154950_1155901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96033.1|1156491_1157268_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZW96034.1|1157385_1157649_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZW96035.1|1157749_1158754_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZW96036.1|1158954_1160556_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZW96037.1|1160581_1161340_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW96038.1|1161431_1162088_-	adenylate kinase	NA	NA	NA	NA	NA
AZW96039.1|1162178_1162943_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZW96040.1|1162952_1163141_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96041.1|1163196_1164240_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZW96042.1|1164236_1164650_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZW96043.1|1164646_1165267_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZW96044.1|1165547_1166498_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96045.1|1166665_1168057_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZW96046.1|1168129_1168708_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZW96047.1|1168824_1170222_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZW96048.1|1170337_1171543_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZW96049.1|1171642_1172161_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZW96050.1|1172255_1172501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZW96051.1|1172728_1173043_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZW96052.1|1173132_1178322_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZW98532.1|1178318_1180487_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZW96053.1|1180506_1182858_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZW96054.1|1182862_1184182_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZW96055.1|1184200_1185874_+	MCE family protein	NA	NA	NA	NA	NA
AZW96056.1|1185878_1186547_+	lipoprotein	NA	NA	NA	NA	NA
AZW96057.1|1186703_1190525_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW96058.1|1190855_1191806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96059.1|1191827_1192973_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96060.1|1193121_1194051_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW96061.1|1194047_1195136_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW96062.1|1195132_1195936_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZW96063.1|1195932_1196664_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZW96064.1|1196721_1198011_-	MFS transporter	NA	NA	NA	NA	NA
AZW96065.1|1198107_1198710_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96066.1|1203263_1203602_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW96067.1|1204270_1204576_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96068.1|1206282_1207233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96069.1|1207229_1208561_-	MFS transporter	NA	NA	NA	NA	NA
AZW96070.1|1209800_1211822_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZW96071.1|1211814_1212456_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZW96072.1|1212452_1212860_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZW96073.1|1212856_1213657_+	SURF1 family protein	NA	NA	NA	NA	NA
AZW96074.1|1213731_1214436_+	oxidoreductase	NA	NA	NA	NA	NA
AZW96075.1|1214467_1215262_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZW96076.1|1215258_1216209_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96077.1|1216307_1217258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96078.1|1217356_1217791_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW96079.1|1217873_1220210_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZW98533.1|1220401_1221418_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1321638	1378849	4106497	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZW96157.1|1321638_1322589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96158.1|1326335_1326947_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZW96159.1|1327169_1328630_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZW96160.1|1328726_1330319_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZW96161.1|1330305_1330584_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96162.1|1330642_1330930_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW96163.1|1330931_1332272_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZW96164.1|1332367_1333057_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96165.1|1333069_1334500_+	MFS transporter	NA	NA	NA	NA	NA
AZW96166.1|1336224_1337046_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96167.1|1337056_1338628_+	amidohydrolase	NA	NA	NA	NA	NA
AZW96168.1|1338656_1339634_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96169.1|1339660_1340464_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZW96170.1|1340460_1341255_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW96171.1|1341262_1342498_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZW96172.1|1342490_1342925_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZW96173.1|1343674_1344625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96174.1|1345246_1346974_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZW96175.1|1347085_1348444_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW96176.1|1348564_1348750_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96177.1|1348736_1349687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96178.1|1349727_1350798_+	FUSC family protein	NA	NA	NA	NA	NA
AZW98539.1|1350820_1351699_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZW96179.1|1351870_1352842_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW96180.1|1353004_1353847_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96181.1|1354008_1354689_+	anti-sigma factor	NA	NA	NA	NA	NA
AZW96182.1|1354682_1355852_+	amine oxidase	NA	NA	NA	NA	NA
AZW96183.1|1355848_1356880_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZW96184.1|1356923_1358165_+	MFS transporter	NA	NA	NA	NA	NA
AZW96185.1|1358199_1359732_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW96186.1|1359812_1360436_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW96187.1|1360466_1361078_+	LysE family translocator	NA	NA	NA	NA	NA
AZW96188.1|1361113_1361584_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZW96189.1|1362015_1363020_+	peptidase M20	NA	NA	NA	NA	NA
AZW96190.1|1363056_1364571_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96191.1|1364574_1365534_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW96192.1|1365562_1366366_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW96193.1|1366367_1368002_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZW96194.1|1368085_1369147_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW96195.1|1369345_1369615_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96196.1|1369618_1370143_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZW96197.1|1370558_1371509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96198.1|1371505_1372576_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZW96199.1|1372648_1373287_+	DedA family protein	NA	NA	NA	NA	NA
AZW96200.1|1373581_1373809_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW96201.1|1373931_1374645_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW96202.1|1374889_1375840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96203.1|1375943_1376225_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96204.1|1376339_1377788_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW96205.1|1377898_1378849_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1469078	1521231	4106497	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZW96286.1|1469078_1470029_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96287.1|1470195_1470549_+	cytochrome C	NA	NA	NA	NA	NA
AZW96288.1|1470561_1470924_+	cytochrome	NA	NA	NA	NA	NA
AZW96289.1|1470965_1471391_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZW96290.1|1471593_1472850_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZW96291.1|1473048_1474029_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96292.1|1474178_1475420_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96293.1|1475518_1476469_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96294.1|1476477_1477173_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZW96295.1|1479994_1480594_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZW96296.1|1480604_1482770_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZW96297.1|1482793_1484578_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZW96298.1|1484577_1484667_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZW96299.1|1485361_1485634_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZW96300.1|1485633_1487700_+	cation acetate symporter	NA	NA	NA	NA	NA
AZW96301.1|1487696_1488647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96302.1|1488745_1489696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96303.1|1489811_1490144_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZW96304.1|1490140_1490827_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZW96305.1|1490813_1491773_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZW98547.1|1491814_1494175_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZW96306.1|1494174_1494807_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZW96307.1|1494869_1496249_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZW96308.1|1496295_1497651_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZW96309.1|1497929_1498178_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96310.1|1498365_1498683_-	virulence factor	NA	NA	NA	NA	NA
AZW96311.1|1498955_1499471_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZW96312.1|1499564_1499726_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96313.1|1499741_1500497_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW96314.1|1500835_1501042_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96315.1|1501049_1501709_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZW96316.1|1502003_1504208_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW96317.1|1504318_1505542_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZW96318.1|1505664_1506639_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW96319.1|1506706_1507900_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZW96320.1|1507914_1508715_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZW96321.1|1508711_1510568_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZW96322.1|1510564_1511170_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW96323.1|1511188_1512574_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZW96324.1|1513299_1514526_+	transporter	NA	NA	NA	NA	NA
AZW96325.1|1514614_1515397_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW96326.1|1515495_1516446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96327.1|1516472_1517246_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZW96328.1|1517257_1518499_+	MFS transporter	NA	NA	NA	NA	NA
AZW96329.1|1520280_1521231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1565156	1624018	4106497	transposase,protease,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZW98548.1|1565156_1565645_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZW96377.1|1565762_1566341_+|protease	protease	protease	NA	NA	NA	NA
AZW96378.1|1566413_1566815_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZW96379.1|1566913_1567864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96380.1|1567870_1568983_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZW96381.1|1569669_1570872_+	MFS transporter	NA	NA	NA	NA	NA
AZW96382.1|1571075_1573736_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96383.1|1573748_1577153_+	nuclease	NA	NA	NA	NA	NA
AZW96384.1|1577820_1580046_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZW96385.1|1580092_1580419_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZW96386.1|1580469_1581078_+	recombination protein RecR	NA	NA	NA	NA	NA
AZW96387.1|1581176_1582127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96388.1|1582196_1582961_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZW96389.1|1582957_1583557_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98549.1|1583660_1584506_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZW96390.1|1584571_1585198_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZW96391.1|1585194_1586145_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96392.1|1586131_1586320_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96393.1|1586243_1587365_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZW96394.1|1587345_1588347_-	aminopeptidase	NA	NA	NA	NA	NA
AZW96395.1|1588452_1589964_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZW96396.1|1589960_1591265_-	peptidase	NA	NA	NA	NA	NA
AZW96397.1|1591376_1591937_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW96398.1|1592204_1592759_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZW96399.1|1593214_1593430_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZW98550.1|1593684_1596282_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZW96400.1|1596278_1597466_+	cupin	NA	NA	NA	NA	NA
AZW96401.1|1598123_1598738_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZW96402.1|1598826_1599954_-	lipoprotein	NA	NA	NA	NA	NA
AZW96403.1|1599965_1600871_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZW96404.1|1601763_1602714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96405.1|1602895_1603648_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZW96406.1|1603716_1604376_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZW96407.1|1604372_1605101_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZW96408.1|1605113_1607393_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZW96409.1|1607417_1607621_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZW96410.1|1607662_1608310_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZW96411.1|1608430_1609348_-	cytochrome C	NA	NA	NA	NA	NA
AZW96412.1|1609344_1610058_-	cytochrome C	NA	NA	NA	NA	NA
AZW96413.1|1610295_1611066_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96414.1|1611070_1611670_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZW96415.1|1611914_1613405_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZW96416.1|1613463_1613748_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW96417.1|1613744_1613873_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96418.1|1613885_1614041_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96419.1|1614313_1615240_-	YicC family protein	NA	NA	NA	NA	NA
AZW96420.1|1615376_1616117_+	ribonuclease PH	NA	NA	NA	NA	NA
AZW96421.1|1616283_1617660_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW96422.1|1617841_1618747_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW96423.1|1618781_1620521_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZW96424.1|1620398_1622201_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW96425.1|1622318_1622969_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZW96426.1|1623067_1624018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1669190	1724781	4106497	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZW96457.1|1669190_1670141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96458.1|1670199_1670973_+	oxidoreductase	NA	NA	NA	NA	NA
AZW96459.1|1670965_1672522_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZW96460.1|1672518_1673469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96461.1|1674795_1675398_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96462.1|1675637_1676339_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZW96463.1|1676332_1677115_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZW96464.1|1677299_1678250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96465.1|1678348_1679086_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZW96466.1|1679275_1680034_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96467.1|1680080_1681070_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96468.1|1681247_1682216_-	transporter	NA	NA	NA	NA	NA
AZW96469.1|1683755_1684724_+	AAA family ATPase	NA	NA	NA	NA	NA
AZW96470.1|1684732_1685674_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZW96471.1|1686147_1687158_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98554.1|1687148_1688663_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZW96472.1|1688659_1690006_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98555.1|1690008_1691043_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZW96473.1|1691092_1692718_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZW96474.1|1693270_1694221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96475.1|1694325_1695273_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98556.1|1695326_1697141_-	histidine kinase	NA	NA	NA	NA	NA
AZW96476.1|1697133_1697808_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW96477.1|1697937_1701012_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZW96478.1|1701025_1701325_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW98557.1|1701639_1702263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZW96479.1|1702506_1703376_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZW96480.1|1703353_1704298_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98558.1|1704383_1705355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98559.1|1705422_1706196_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96481.1|1706192_1707389_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZW96482.1|1707419_1708370_-	hydrolase	NA	NA	NA	NA	NA
AZW96483.1|1708591_1709281_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW96484.1|1709345_1710101_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96485.1|1710152_1711145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96486.1|1711154_1712108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98560.1|1712223_1713186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96487.1|1714587_1715016_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96488.1|1715012_1715963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98561.1|1716256_1716979_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZW96489.1|1717417_1718605_-	MFS transporter	NA	NA	NA	NA	NA
AZW96490.1|1718608_1718989_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96491.1|1720708_1721680_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96492.1|1721693_1722407_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96493.1|1722411_1723329_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96494.1|1723435_1723732_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96495.1|1723830_1724781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1746439	1838409	4106497	transposase,tRNA	Brevibacillus_phage(14.29%)	60	NA	NA
AZW96515.1|1746439_1747390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96516.1|1747488_1748439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96517.1|1748462_1748927_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZW96518.1|1749073_1750282_+	flavohemoprotein	NA	NA	NA	NA	NA
AZW96519.1|1750292_1750763_+	DNA-binding protein	NA	NA	NA	NA	NA
AZW96520.1|1750881_1752171_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZW96521.1|1754911_1755862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96522.1|1755960_1756977_-	folate-binding protein	NA	NA	NA	NA	NA
AZW96523.1|1757143_1758190_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZW96524.1|1758186_1758813_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZW96525.1|1758809_1759862_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZW96526.1|1759911_1760682_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW96527.1|1760732_1761569_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96528.1|1761764_1762505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96529.1|1762579_1763323_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96530.1|1763984_1764758_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZW96531.1|1765895_1767185_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZW96532.1|1768795_1770043_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW96533.1|1770052_1771762_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZW96534.1|1771758_1772697_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW96535.1|1772693_1773977_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZW96536.1|1773980_1774463_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW96537.1|1774463_1775450_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96538.1|1775622_1776342_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96539.1|1776458_1777409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96540.1|1780594_1781944_+	amidase	NA	NA	NA	NA	NA
AZW96541.1|1781962_1782796_+	putative hydro-lyase	NA	NA	NA	NA	NA
AZW96542.1|1782929_1783805_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW96543.1|1783848_1787565_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
AZW96544.1|1787573_1788203_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW96545.1|1799476_1799914_+	protein FimA	NA	NA	NA	NA	NA
AZW96546.1|1800073_1800898_+	fimbrial chaperone	NA	NA	NA	NA	NA
AZW96547.1|1800960_1803582_+	outer membrane usher protein FimC	NA	NA	NA	NA	NA
AZW98562.1|1803595_1804693_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AZW96548.1|1804685_1806440_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
AZW96549.1|1807757_1808258_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW96550.1|1808264_1809350_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96551.1|1810795_1811287_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZW96552.1|1811300_1812266_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96553.1|1812286_1812988_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96554.1|1814162_1814675_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW96555.1|1814753_1818377_+	5-oxoprolinase	NA	NA	NA	NA	NA
AZW96556.1|1818390_1819422_-	peptidase C45	NA	NA	NA	NA	NA
AZW96557.1|1820581_1821415_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZW96558.1|1821428_1822247_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96559.1|1822348_1823341_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96560.1|1823558_1824335_-	methyltransferase	NA	NA	NA	NA	NA
AZW96561.1|1824442_1825225_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZW96562.1|1825351_1826938_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
AZW96563.1|1826962_1827826_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AZW96564.1|1828033_1828810_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
AZW98563.1|1828802_1829312_-	cyclophilin	NA	NA	NA	NA	NA
AZW96565.1|1829440_1830124_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96566.1|1830363_1831824_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
AZW96567.1|1831843_1832488_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AZW96568.1|1832524_1833490_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AZW96569.1|1833588_1834539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96570.1|1834599_1835634_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AZW96571.1|1835706_1836999_+	aspartate kinase	NA	NA	NA	NA	NA
AZW98564.1|1837392_1838409_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 15
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	1929213	2000731	4106497	transposase,protease	Faecalibacterium_phage(12.5%)	58	NA	NA
AZW96645.1|1929213_1930164_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96646.1|1930245_1930794_-	OmpA family protein	NA	NA	NA	NA	NA
AZW96647.1|1930796_1931135_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96648.1|1931530_1934122_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
AZW96649.1|1934188_1934932_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
AZW96650.1|1934944_1935331_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW96651.1|1935337_1935628_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZW96652.1|1935763_1936063_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96653.1|1936131_1937034_+	EamA family transporter	NA	NA	NA	NA	NA
AZW96654.1|1937037_1937808_+	anion permease	NA	NA	NA	NA	NA
AZW96655.1|1938193_1938643_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96656.1|1938710_1939661_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96657.1|1939647_1939878_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96658.1|1940022_1940934_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96659.1|1941159_1942677_+	propionyl-CoA--succinate CoA transferase	NA	NA	NA	NA	NA
AZW96660.1|1943908_1944871_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96661.1|1944959_1945208_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96662.1|1951786_1954534_+	autotransporter Vag8	NA	NA	NA	NA	NA
AZW96663.1|1954554_1955178_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZW96664.1|1955189_1955660_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZW96665.1|1955671_1956058_-	ribosome silencing factor	NA	NA	NA	NA	NA
AZW96666.1|1956119_1956713_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZW96667.1|1956703_1957615_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZW96668.1|1957630_1959004_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZW96669.1|1959038_1959770_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZW96670.1|1959846_1961445_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZW96671.1|1961505_1962861_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZW96672.1|1962895_1964221_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZW96673.1|1964402_1965335_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW96674.1|1965345_1966839_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW96675.1|1966835_1967759_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW96676.1|1967761_1969024_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZW98570.1|1969043_1970057_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZW96677.1|1970129_1970453_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZW96678.1|1970449_1971724_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZW96679.1|1971866_1972817_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96680.1|1972813_1974451_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZW96681.1|1974455_1975295_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW96682.1|1975291_1976308_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW96683.1|1976415_1977990_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96684.1|1978409_1979954_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZW96685.1|1980058_1981126_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZW96686.1|1981144_1982731_-	multidrug resistance protein	NA	NA	NA	NA	NA
AZW96687.1|1982727_1983942_-	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW96688.1|1985490_1985979_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96689.1|1986038_1986896_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW96690.1|1986958_1987909_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW96691.1|1987971_1988961_+	quinone oxidoreductase	NA	NA	NA	NA	NA
AZW96692.1|1989035_1989917_-|protease	protease HtpX	protease	NA	NA	NA	NA
AZW96693.1|1990974_1991826_+	sulfurtransferase	NA	NA	NA	NA	NA
AZW96694.1|1991842_1992412_-	phosphohydrolase	NA	NA	NA	NA	NA
AZW96695.1|1992442_1993306_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW96696.1|1993465_1994542_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZW98571.1|1994606_1996304_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZW96697.1|1996320_1997151_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZW96698.1|1997179_1998202_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96699.1|1998731_1999682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96700.1|1999780_2000731_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2047048	2095063	4106497	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZW96745.1|2047048_2047999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96746.1|2048097_2050698_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZW96747.1|2050804_2051809_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96748.1|2051917_2053258_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZW96749.1|2053298_2054327_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96750.1|2054522_2055068_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96751.1|2055064_2055625_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZW96752.1|2055723_2056674_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96753.1|2056711_2057299_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZW96754.1|2057316_2057700_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZW96755.1|2059059_2060352_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZW96756.1|2060486_2061527_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZW98576.1|2061624_2062641_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW96757.1|2062908_2063556_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW96758.1|2063681_2064440_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZW98577.1|2064514_2065204_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZW96759.1|2065221_2066106_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZW96760.1|2066102_2066882_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZW96761.1|2066908_2067586_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98578.1|2067874_2068627_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96762.1|2068745_2070146_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZW96763.1|2070169_2070568_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZW96764.1|2070743_2070944_+	copper chaperone	NA	NA	NA	NA	NA
AZW96765.1|2071082_2071811_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZW96766.1|2071944_2073360_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZW96767.1|2073363_2074227_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZW96768.1|2074239_2074989_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZW96769.1|2075171_2077187_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZW98579.1|2077168_2077717_-	arylesterase	NA	NA	NA	NA	NA
AZW96770.1|2077793_2078513_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZW96771.1|2078611_2079562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96772.1|2079660_2080611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96773.1|2080759_2081098_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZW96774.1|2081155_2081317_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZW96775.1|2081348_2081549_-	CsbD family protein	NA	NA	NA	NA	NA
AZW96776.1|2081814_2084388_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW96777.1|2084458_2087032_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZW96778.1|2089558_2090047_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZW96779.1|2090138_2091290_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZW96780.1|2091343_2092165_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZW96781.1|2092203_2093433_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZW96782.1|2093561_2094002_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZW96783.1|2093946_2094126_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96784.1|2094112_2095063_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2098456	2159661	4106497	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZW96789.1|2098456_2101318_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZW96790.1|2101307_2102273_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZW96791.1|2102332_2104327_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZW96792.1|2104425_2105376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96793.1|2105372_2105747_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96794.1|2106008_2107217_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZW96795.1|2107213_2109514_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZW96796.1|2109566_2112179_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZW96797.1|2112538_2114464_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZW96798.1|2114460_2115357_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZW96799.1|2115363_2116503_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZW96800.1|2116502_2117324_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZW96801.1|2118894_2119224_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZW96802.1|2119606_2120863_+	autotransporter Phg	NA	NA	NA	NA	NA
AZW96803.1|2120937_2121219_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96804.1|2121260_2121581_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96805.1|2121887_2122091_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZW96806.1|2122174_2122741_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZW96807.1|2123086_2123287_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZW96808.1|2123398_2123977_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZW96809.1|2124155_2125466_+	trigger factor	NA	NA	NA	NA	NA
AZW96810.1|2125468_2126122_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZW96811.1|2126226_2127531_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZW96812.1|2127719_2130173_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZW96813.1|2130296_2131247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96814.1|2131474_2132698_+	CoA transferase	NA	NA	NA	NA	NA
AZW96815.1|2132763_2133735_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96816.1|2133747_2134203_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW96817.1|2134216_2135020_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW96818.1|2135016_2135448_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96819.1|2135444_2136602_+	thiolase	NA	NA	NA	NA	NA
AZW96820.1|2136623_2137400_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZW96821.1|2139564_2140281_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW96822.1|2140273_2140915_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW96823.1|2140949_2141681_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96824.1|2141698_2141911_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96825.1|2142481_2143432_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96826.1|2144989_2145718_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZW96827.1|2145768_2146971_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZW96828.1|2147048_2149085_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZW96829.1|2149337_2149829_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZW96830.1|2150044_2150557_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZW96831.1|2150574_2151786_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZW96832.1|2151823_2152234_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZW96833.1|2152235_2152559_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZW96834.1|2152561_2153074_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZW96835.1|2153203_2155066_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZW96836.1|2155075_2155417_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZW96837.1|2155416_2155611_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZW96838.1|2155735_2156629_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZW96839.1|2156625_2157576_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96840.1|2157700_2158510_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW96841.1|2158710_2159661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2187444	2228135	4106497	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZW96861.1|2187444_2190069_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZW96862.1|2190055_2190310_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZW96863.1|2190376_2190958_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96864.1|2191261_2191522_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZW96865.1|2191687_2192311_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZW96866.1|2192310_2193084_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZW96867.1|2193080_2194289_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZW96868.1|2194314_2194788_-	RidA family protein	NA	NA	NA	NA	NA
AZW96869.1|2194861_2195812_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96870.1|2195910_2196861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96871.1|2196959_2198309_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZW96872.1|2199074_2199830_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZW96873.1|2199922_2202805_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZW96874.1|2203127_2203553_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZW96875.1|2203580_2204729_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZW96876.1|2204725_2205232_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW96877.1|2205238_2206534_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZW96878.1|2206574_2207879_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZW96879.1|2207880_2208519_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96880.1|2208521_2209682_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZW96881.1|2209708_2211064_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZW96882.1|2211067_2212138_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZW96883.1|2212276_2212513_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZW96884.1|2212600_2213707_+	GTPase HflX	NA	NA	NA	NA	NA
AZW96885.1|2213672_2214977_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZW96886.1|2214995_2215895_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZW96887.1|2216078_2217236_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZW96888.1|2217300_2218608_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZW96889.1|2218721_2219261_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW96890.1|2219538_2219751_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZW96891.1|2219770_2221801_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZW98581.1|2222600_2224769_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZW96892.1|2225178_2225478_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96893.1|2225762_2226176_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZW96894.1|2226135_2227086_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96895.1|2227184_2228135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2239339	2288735	4106497	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZW96909.1|2239339_2240290_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96910.1|2240286_2241561_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZW96911.1|2241658_2242858_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZW96912.1|2242854_2243508_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW96913.1|2243504_2244941_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZW96914.1|2244928_2245288_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZW96915.1|2246260_2247211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96916.1|2248256_2250122_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZW98583.1|2250379_2251900_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZW96917.1|2251987_2252638_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZW96918.1|2253586_2254882_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZW96919.1|2254903_2255788_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96920.1|2255886_2256762_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZW96921.1|2256751_2257108_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZW96922.1|2257181_2258213_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW96923.1|2258342_2258522_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZW96924.1|2258619_2259144_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZW96925.1|2259154_2259991_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW96926.1|2260103_2260475_+	transcriptional regulator	NA	NA	NA	NA	NA
AZW96927.1|2260471_2261023_+	ATPase	NA	NA	NA	NA	NA
AZW96928.1|2261038_2262730_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZW96929.1|2262778_2263459_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96930.1|2263706_2264171_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96931.1|2264340_2265270_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZW96932.1|2265282_2265930_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96933.1|2266003_2267821_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZW96934.1|2267904_2268855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96935.1|2269507_2270458_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96936.1|2270476_2270824_-	GFA family protein	NA	NA	NA	NA	NA
AZW96937.1|2270852_2272292_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZW96938.1|2272310_2272706_-	VOC family protein	NA	NA	NA	NA	NA
AZW96939.1|2272880_2273489_+	peptidase S16	NA	NA	NA	NA	NA
AZW96940.1|2273501_2274320_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZW96941.1|2274271_2275246_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW96942.1|2275274_2276336_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96943.1|2276332_2278549_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZW96944.1|2278562_2279021_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZW96945.1|2279178_2279523_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96946.1|2279679_2280585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98584.1|2280671_2281685_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZW98585.1|2283664_2284681_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW96947.1|2284823_2286176_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZW96948.1|2286350_2286647_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96949.1|2287784_2288735_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2300231	2364600	4106497	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZW96963.1|2300231_2301182_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96964.1|2301168_2301360_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96965.1|2301403_2302354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96966.1|2302452_2303418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96967.1|2303555_2304455_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW96968.1|2307049_2308537_+	hypothetical protein	NA	NA	NA	NA	NA
AZW96969.1|2308547_2309744_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZW96970.1|2309816_2311136_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZW96971.1|2311132_2312008_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW96972.1|2312038_2313208_-	CoA transferase	NA	NA	NA	NA	NA
AZW96973.1|2313204_2313519_-	ferredoxin	NA	NA	NA	NA	NA
AZW96974.1|2313540_2314263_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW96975.1|2314262_2315081_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW96976.1|2315085_2315613_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZW96977.1|2315618_2316884_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZW96978.1|2317233_2318373_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96979.1|2318450_2319323_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW96980.1|2320193_2321144_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW96981.1|2321103_2321739_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96982.1|2322098_2323421_-	isocitrate lyase	NA	NA	NA	NA	NA
AZW96983.1|2323649_2324561_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZW96984.1|2325985_2326558_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZW96985.1|2326597_2328427_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZW96986.1|2328389_2329448_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZW96987.1|2329485_2329947_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZW96988.1|2330031_2330778_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZW96989.1|2332268_2335499_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW96990.1|2335565_2336897_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZW96991.1|2337149_2337524_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZW96992.1|2337626_2338805_-	hypothetical protein	NA	NA	NA	NA	NA
AZW96993.1|2338815_2339406_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZW98587.1|2339516_2340323_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZW96994.1|2340348_2341143_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZW96995.1|2342143_2343118_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW96996.1|2343276_2343789_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZW96997.1|2343945_2344917_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW96998.1|2346661_2347468_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW98588.1|2347464_2348601_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZW96999.1|2348716_2349481_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97000.1|2349594_2350365_-	spermidine synthase	NA	NA	NA	NA	NA
AZW97001.1|2350449_2351661_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW97002.1|2351709_2352084_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZW97003.1|2352184_2353447_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZW97004.1|2353443_2354301_-	ABC transporter permease	NA	NA	NA	NA	NA
AZW97005.1|2354473_2355475_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97006.1|2355926_2356877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97007.1|2358392_2359592_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZW97008.1|2359960_2360197_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZW97009.1|2360260_2360428_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZW97010.1|2360541_2362437_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZW97011.1|2362600_2363551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZW97012.1|2363649_2364600_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2529061	2587305	4106497	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZW97150.1|2529061_2530012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97151.1|2530491_2531148_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZW97152.1|2531162_2532830_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZW97153.1|2532832_2533462_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97154.1|2533673_2534768_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97155.1|2534912_2535725_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZW97156.1|2535728_2537432_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZW97157.1|2537482_2538613_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZW97158.1|2538799_2539876_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZW98593.1|2539957_2540608_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZW97159.1|2540622_2542056_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZW97160.1|2542309_2543128_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97161.1|2543124_2543829_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZW97162.1|2544728_2545844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97163.1|2545877_2546252_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97164.1|2546274_2547432_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZW97165.1|2547444_2547678_-	lipoprotein	NA	NA	NA	NA	NA
AZW97166.1|2548312_2551282_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZW97167.1|2551296_2551506_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZW97168.1|2551657_2552287_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97169.1|2552283_2554401_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZW97170.1|2554397_2555078_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZW97171.1|2555074_2555635_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZW97172.1|2555641_2556739_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZW97173.1|2556876_2557485_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZW97174.1|2557481_2558774_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZW97175.1|2558787_2559330_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZW97176.1|2559339_2560176_-	M48 family peptidase	NA	NA	NA	NA	NA
AZW97177.1|2560209_2561271_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZW97178.1|2561312_2562365_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZW97179.1|2562380_2562683_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97180.1|2562824_2563775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97181.1|2563953_2565648_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZW97182.1|2565644_2566730_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZW97183.1|2566777_2567677_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97184.1|2567687_2568332_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZW97185.1|2569353_2572596_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZW97186.1|2572606_2573704_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZW97187.1|2573966_2574950_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZW97188.1|2575048_2575999_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97189.1|2576097_2577048_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97190.1|2577057_2577747_-	VIT family protein	NA	NA	NA	NA	NA
AZW97191.1|2577806_2578244_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW97192.1|2578289_2579183_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW97193.1|2579230_2580403_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZW97194.1|2580399_2581554_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW97195.1|2581750_2582101_-	RnfH family protein	NA	NA	NA	NA	NA
AZW97196.1|2582090_2582525_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZW97197.1|2582541_2583492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97198.1|2583639_2584107_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZW97199.1|2584087_2585245_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZW97200.1|2585310_2586237_-	paraslipin	NA	NA	NA	NA	NA
AZW97201.1|2586354_2587305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2629585	2696085	4106497	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZW97240.1|2629585_2630536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97241.1|2630905_2631478_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZW97242.1|2631480_2632491_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZW97243.1|2632483_2632984_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZW97244.1|2632994_2633336_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZW97245.1|2633347_2634139_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZW97246.1|2634155_2634425_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZW97247.1|2634447_2635236_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZW98597.1|2635282_2636299_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW97248.1|2636515_2637958_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZW97249.1|2638136_2639756_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZW97250.1|2639876_2641697_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZW97251.1|2641775_2643308_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZW97252.1|2643341_2644988_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZW97253.1|2645057_2646080_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZW97254.1|2646097_2647231_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZW97255.1|2647233_2647923_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZW97256.1|2647922_2648708_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZW97257.1|2648751_2649516_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZW97258.1|2649554_2650976_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZW97259.1|2651041_2651746_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZW97260.1|2651793_2652213_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZW97261.1|2652225_2652633_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZW98598.1|2652816_2653527_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZW97262.1|2653653_2653944_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZW97263.1|2653961_2654444_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZW97264.1|2658949_2660104_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZW98599.1|2660409_2661426_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW97265.1|2661672_2662461_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97266.1|2662527_2663208_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW97267.1|2663204_2663975_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZW97268.1|2664073_2665024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97269.1|2665079_2665997_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZW97270.1|2666007_2667186_-	mandelate racemase	NA	NA	NA	NA	NA
AZW97271.1|2667205_2668201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW97272.1|2669789_2670398_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZW97273.1|2670385_2671426_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZW97274.1|2671443_2672406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW97275.1|2672402_2673596_-	CoA transferase	NA	NA	NA	NA	NA
AZW97276.1|2673592_2674390_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZW97277.1|2674415_2675402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW97278.1|2675420_2677460_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZW98600.1|2677661_2678342_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97279.1|2678355_2679267_-	CoA ester lyase	NA	NA	NA	NA	NA
AZW97280.1|2679263_2679842_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW97281.1|2679980_2680886_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97282.1|2680893_2684313_+	nuclease	NA	NA	NA	NA	NA
AZW97283.1|2684300_2686901_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZW97284.1|2687856_2688489_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97285.1|2688882_2689641_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97286.1|2689637_2690840_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZW97287.1|2691027_2691978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97288.1|2692885_2694031_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZW98601.1|2694050_2694773_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW97289.1|2694889_2695069_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97290.1|2695134_2696085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2899148	2980425	4106497	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZW97454.1|2899148_2900099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97455.1|2900095_2900998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97456.1|2901085_2901844_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZW97457.1|2901856_2903005_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZW97458.1|2903045_2904473_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZW97459.1|2904702_2905917_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZW97460.1|2905962_2908833_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZW97461.1|2911243_2911732_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZW97462.1|2911857_2914554_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZW97463.1|2914708_2916991_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZW97464.1|2917155_2917788_+	fimbrial protein	NA	NA	NA	NA	NA
AZW97465.1|2917886_2918837_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZW97466.1|2918883_2919438_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZW97467.1|2919505_2920351_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZW97468.1|2920420_2921389_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW97469.1|2921388_2923185_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97470.1|2925084_2929011_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZW97471.1|2929301_2929478_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97472.1|2929746_2932977_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZW97473.1|2933258_2934086_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZW97474.1|2934119_2934815_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZW97475.1|2934807_2936088_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZW97476.1|2936097_2937075_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98616.1|2937056_2938757_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZW97477.1|2938859_2939963_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZW97478.1|2939993_2940749_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW97479.1|2940755_2942276_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZW97480.1|2942318_2942621_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97481.1|2942617_2943250_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97482.1|2943328_2945194_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZW97483.1|2945190_2946006_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZW97484.1|2946013_2947129_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97485.1|2948033_2948912_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW97486.1|2948911_2949736_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZW97487.1|2949903_2950854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97488.1|2951036_2953916_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZW97489.1|2953897_2954674_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW97490.1|2954766_2956230_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZW97491.1|2956226_2956598_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZW97492.1|2956615_2957929_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97493.1|2957965_2958424_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZW97494.1|2958536_2959487_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97495.1|2959483_2960497_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZW97496.1|2960636_2961623_+	homoserine kinase	NA	NA	NA	NA	NA
AZW97497.1|2961666_2962467_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97498.1|2963269_2964220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97499.1|2964371_2964974_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97500.1|2964992_2965625_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZW97501.1|2965862_2967749_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZW97502.1|2967767_2968610_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZW97503.1|2968606_2969965_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZW97504.1|2970185_2970980_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZW97505.1|2971210_2972704_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZW97506.1|2972939_2975021_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZW97507.1|2975215_2976256_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZW97508.1|2976390_2977407_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZW97509.1|2977428_2978286_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZW98617.1|2978330_2979107_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZW97510.1|2979474_2980425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	2989493	3038538	4106497	transposase,holin,tRNA	uncultured_Mediterranean_phage(42.86%)	45	NA	NA
AZW97518.1|2989493_2989907_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZW97519.1|2989947_2990265_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZW97520.1|2990349_2991066_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98618.1|2991329_2992751_+	siroheme synthase	NA	NA	NA	NA	NA
AZW97521.1|2995423_2996374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98619.1|2996946_2997963_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW98620.1|2998298_2998940_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZW97522.1|2999030_3000467_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZW97523.1|3000624_3001698_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZW97524.1|3001694_3002831_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZW97525.1|3002975_3003320_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZW97526.1|3003386_3005267_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZW97527.1|3005316_3006252_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZW98621.1|3006584_3007601_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW97528.1|3008538_3009966_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZW97529.1|3009962_3010985_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZW97530.1|3010974_3011448_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZW97531.1|3011573_3012476_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AZW97532.1|3012472_3014116_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZW98622.1|3014112_3015120_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW98623.1|3015950_3016967_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZW97533.1|3017066_3017699_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZW97534.1|3017707_3018097_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZW97535.1|3018149_3019202_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZW97536.1|3020065_3020830_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
AZW97537.1|3020903_3021404_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZW97538.1|3021418_3023476_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZW97539.1|3023502_3023796_-	response regulator	NA	NA	NA	NA	NA
AZW97540.1|3023897_3024845_-	motility protein MotB	NA	NA	NA	NA	NA
AZW97541.1|3024857_3025733_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZW97542.1|3025853_3026414_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZW97543.1|3026448_3026772_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZW97544.1|3027207_3027945_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZW97545.1|3028243_3029194_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97546.1|3029437_3029701_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZW97547.1|3029774_3030056_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97548.1|3030072_3030933_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZW97549.1|3030929_3031265_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97550.1|3031318_3031969_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZW97551.1|3033649_3034594_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97552.1|3034639_3034957_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97553.1|3034959_3035898_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZW97554.1|3036075_3036561_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZW97555.1|3036579_3037128_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZW97556.1|3037404_3038538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3050145	3190713	4106497	transposase,holin	Bacillus_virus(11.11%)	117	NA	NA
AZW97565.1|3050145_3051096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97566.1|3051194_3052145_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97567.1|3052187_3053363_+	flagellin FliC	NA	NA	NA	NA	NA
AZW97568.1|3053584_3055375_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZW97569.1|3055387_3057049_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZW97570.1|3057061_3059767_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZW97571.1|3060059_3061814_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZW97572.1|3061810_3062437_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW97573.1|3062433_3063285_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZW97574.1|3063360_3065475_+	M3 family peptidase	NA	NA	NA	NA	NA
AZW97575.1|3065625_3066276_+	SCO family protein	NA	NA	NA	NA	NA
AZW97576.1|3066421_3066673_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZW97577.1|3066742_3068125_-	multidrug transporter	NA	NA	NA	NA	NA
AZW97578.1|3068121_3071301_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZW98625.1|3072108_3073026_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97579.1|3073077_3073809_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZW97580.1|3073868_3074441_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZW98626.1|3075949_3076966_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZW97581.1|3077103_3078153_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZW97582.1|3078257_3079208_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97583.1|3079303_3080029_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZW97584.1|3080239_3080620_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZW97585.1|3080925_3081798_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZW97586.1|3081805_3082186_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97587.1|3082339_3083614_-	radical SAM protein	NA	NA	NA	NA	NA
AZW98627.1|3085101_3086010_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZW97588.1|3086807_3087872_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZW97589.1|3089708_3090743_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97590.1|3090932_3091574_-	peroxiredoxin	NA	NA	NA	NA	NA
AZW97591.1|3091656_3093483_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW97592.1|3093726_3094656_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZW97593.1|3094655_3095405_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZW97594.1|3095476_3096391_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZW97595.1|3096410_3097556_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZW97596.1|3097616_3098528_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZW97597.1|3098608_3099559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97598.1|3099657_3100242_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZW97599.1|3100276_3101266_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZW97600.1|3101262_3102204_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZW97601.1|3102200_3103421_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZW97602.1|3103463_3103778_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZW97603.1|3103969_3104329_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZW97604.1|3104330_3106061_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZW97605.1|3106233_3106905_-	cytidylate kinase	NA	NA	NA	NA	NA
AZW97606.1|3106919_3108248_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZW97607.1|3108244_3109144_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZW97608.1|3109230_3110316_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZW97609.1|3110308_3111442_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZW97610.1|3111441_3114123_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZW97611.1|3114493_3115075_+	OmpA family protein	NA	NA	NA	NA	NA
AZW97612.1|3115152_3115926_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZW97613.1|3115922_3116600_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZW97614.1|3116815_3117997_+	MFS transporter	NA	NA	NA	NA	NA
AZW97615.1|3118473_3118731_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97616.1|3118769_3118952_+	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZW97617.1|3118981_3119932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98628.1|3120061_3120454_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZW97618.1|3120730_3121642_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZW97619.1|3121766_3122741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW97620.1|3122737_3123688_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97621.1|3123786_3124872_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZW97622.1|3124969_3125380_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZW97623.1|3125995_3127909_+	S9 family peptidase	NA	NA	NA	NA	NA
AZW97624.1|3128044_3130657_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZW97625.1|3130658_3131393_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZW97626.1|3131556_3132738_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZW97627.1|3132734_3132947_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97628.1|3132943_3133924_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZW98629.1|3133969_3134797_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZW97629.1|3134943_3136761_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZW97630.1|3136815_3137199_+	ferredoxin	NA	NA	NA	NA	NA
AZW97631.1|3137195_3138146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97632.1|3138258_3138510_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97633.1|3138703_3138919_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97634.1|3139015_3140134_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZW97635.1|3140253_3140466_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97636.1|3140625_3140847_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97637.1|3140899_3141850_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97638.1|3143026_3144397_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZW97639.1|3144429_3145221_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97640.1|3145233_3146289_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97641.1|3146314_3147190_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97642.1|3147295_3147544_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97643.1|3147578_3149033_-	carboxylase	NA	NA	NA	NA	NA
AZW97644.1|3149029_3149551_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZW97645.1|3149579_3150932_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW97646.1|3151155_3154044_-	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZW97647.1|3156188_3157490_+	phospholipase	NA	NA	NA	NA	NA
AZW97648.1|3157504_3158221_-	flagellar brake protein	NA	NA	NA	NA	NA
AZW97649.1|3158502_3159183_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZW97650.1|3159194_3159362_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97651.1|3159470_3159623_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97652.1|3159710_3160370_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZW97653.1|3160750_3162601_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZW97654.1|3162597_3163548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97655.1|3164711_3166427_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZW97656.1|3166437_3166929_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZW97657.1|3167001_3168018_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZW97658.1|3168185_3168965_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZW97659.1|3168983_3169511_-	lipoprotein	NA	NA	NA	NA	NA
AZW97660.1|3169509_3169716_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97661.1|3169804_3170074_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZW97662.1|3170164_3172324_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZW97663.1|3172444_3173164_+	lipoprotein	NA	NA	NA	NA	NA
AZW97664.1|3173160_3174111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97665.1|3174251_3175469_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZW97666.1|3175462_3176074_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZW97667.1|3176707_3177685_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZW97668.1|3177828_3178575_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZW97669.1|3178596_3179043_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZW97670.1|3179830_3182062_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZW97671.1|3182084_3182885_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97672.1|3183166_3184399_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZW97673.1|3184509_3185499_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW97674.1|3185529_3186918_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZW97675.1|3188516_3189500_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98630.1|3189696_3190713_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3313301	3356208	4106497	transposase	Planktothrix_phage(50.0%)	35	NA	NA
AZW97772.1|3313301_3314252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97773.1|3314238_3314427_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97774.1|3314374_3314782_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZW97775.1|3314854_3317050_+	DNA methylase	NA	NA	NA	NA	NA
AZW97776.1|3317271_3318222_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97777.1|3318181_3318706_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZW97778.1|3318837_3319809_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98635.1|3319928_3322373_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZW97779.1|3322388_3322979_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZW97780.1|3323222_3324173_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97781.1|3324330_3325596_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZW97782.1|3325629_3326727_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZW97783.1|3327381_3328332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97784.1|3328332_3328902_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97785.1|3328969_3329785_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW97786.1|3329951_3331571_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW97787.1|3331649_3332591_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW97788.1|3332590_3333475_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW97789.1|3333478_3335131_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AZW97790.1|3335170_3336568_+	amidase	NA	NA	NA	NA	NA
AZW97791.1|3336609_3337989_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZW97792.1|3338028_3338247_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
AZW97793.1|3338587_3339460_+	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA	NA
AZW97794.1|3339619_3340570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97795.1|3341301_3341679_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZW97796.1|3341663_3342365_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97797.1|3342508_3343201_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZW97798.1|3343200_3344304_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZW97799.1|3344413_3346786_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZW97800.1|3346782_3348342_+	chaperone SurA	NA	NA	NA	NA	NA
AZW97801.1|3348366_3349164_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZW97802.1|3349195_3350341_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZW97803.1|3350445_3351888_+	pyruvate kinase	NA	NA	NA	NA	NA
AZW98636.1|3351890_3352979_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97804.1|3355257_3356208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3365500	3398183	4106497	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(20.0%)	42	NA	NA
AZW97817.1|3365500_3367231_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZW97818.1|3367296_3367869_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZW97819.1|3367849_3368536_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZW97820.1|3368891_3369563_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZW97821.1|3369569_3369770_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97822.1|3370112_3370394_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97823.1|3370390_3370924_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZW97824.1|3370905_3371457_-	lysozyme	NA	NA	NA	NA	NA
AZW97825.1|3371435_3371678_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97826.1|3371682_3372495_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97827.1|3372494_3372758_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97828.1|3372976_3373393_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97829.1|3373397_3377354_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZW97830.1|3377346_3377736_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZW97831.1|3377732_3378266_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZW97832.1|3378333_3378693_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97833.1|3378702_3381315_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZW97834.1|3381340_3381631_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZW97835.1|3381648_3381978_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZW97836.1|3381987_3382506_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZW97837.1|3382760_3383261_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZW97838.1|3383268_3383691_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97839.1|3383687_3384086_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZW97840.1|3384082_3384478_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZW97841.1|3384477_3384678_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97842.1|3384679_3385162_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZW97843.1|3385224_3385476_-	hypothetical protein	NA	NA	NA	NA	NA
AZW97844.1|3385485_3386133_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZW97845.1|3386150_3387101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97846.1|3387529_3388132_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZW97847.1|3388254_3388497_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZW98637.1|3388502_3389558_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZW97848.1|3389586_3391005_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZW97849.1|3391007_3392285_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZW97850.1|3392271_3392721_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZW97851.1|3393396_3394347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW97852.1|3394364_3394586_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97853.1|3394600_3395299_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97854.1|3395291_3395612_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98638.1|3396091_3396703_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZW97855.1|3396768_3396981_+	hypothetical protein	NA	NA	NA	NA	NA
AZW97856.1|3397232_3398183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3600401	3655375	4106497	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
AZW98037.1|3600401_3601352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98038.1|3601468_3602536_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
AZW98039.1|3602611_3605740_-	ribonuclease E/G	NA	NA	NA	NA	NA
AZW98040.1|3606247_3607213_+	23S rRNA pseudouridine(955/2504/2580) synthase	NA	NA	NA	NA	NA
AZW98041.1|3607215_3607887_+	hydrolase	NA	NA	NA	NA	NA
AZW98042.1|3608043_3609003_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AZW98043.1|3609010_3609673_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AZW98044.1|3609669_3610620_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98045.1|3610741_3611995_+	CoA transferase	NA	NA	NA	NA	NA
AZW98046.1|3611972_3612935_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98647.1|3613087_3613561_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZW98047.1|3613560_3614793_+	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AZW98048.1|3615538_3615820_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98049.1|3615806_3616793_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98050.1|3616936_3617341_+	RidA family protein	NA	NA	NA	NA	NA
AZW98051.1|3617482_3620869_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZW98052.1|3620899_3622363_+	Short chain fatty acid transporter	NA	NA	NA	NA	NA
AZW98053.1|3622359_3624000_+	1-pyrroline-5-carboxylate dehydrogenase	NA	NA	NA	NA	NA
AZW98054.1|3624109_3624745_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98055.1|3624774_3625215_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98056.1|3625725_3625929_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZW98057.1|3626104_3627010_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98058.1|3627108_3628059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98059.1|3628157_3629108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98060.1|3630889_3632083_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZW98061.1|3632148_3633177_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW98062.1|3633203_3634376_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW98063.1|3634501_3635479_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98064.1|3635489_3636461_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98065.1|3636527_3637313_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW98066.1|3637305_3638538_-	CoA transferase	NA	NA	NA	NA	NA
AZW98067.1|3638733_3639489_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZW98068.1|3639599_3640118_+	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZW98648.1|3641906_3643307_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZW98069.1|3643406_3643751_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZW98070.1|3643839_3644310_+	universal stress protein	NA	NA	NA	NA	NA
AZW98071.1|3644720_3645119_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZW98072.1|3645250_3646201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98073.1|3648645_3649380_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZW98074.1|3649789_3649969_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98649.1|3650159_3651473_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZW98075.1|3651488_3653000_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98076.1|3652996_3654202_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZW98077.1|3654397_3655375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3745188	3799383	4106497	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZW98162.1|3745188_3746139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98163.1|3746261_3746990_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZW98164.1|3746996_3748265_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZW98165.1|3748261_3749095_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZW98166.1|3749131_3749872_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZW98167.1|3749991_3751167_-	dihydroorotase	NA	NA	NA	NA	NA
AZW98168.1|3751163_3752117_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZW98169.1|3752130_3752532_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZW98170.1|3752524_3753202_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZW98657.1|3753217_3753382_-	rubredoxin	NA	NA	NA	NA	NA
AZW98171.1|3753498_3754347_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZW98172.1|3754343_3754997_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZW98173.1|3755013_3756297_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZW98174.1|3756536_3758162_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZW98175.1|3758255_3758657_-	RidA family protein	NA	NA	NA	NA	NA
AZW98176.1|3758681_3759116_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZW98177.1|3759117_3760767_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZW98178.1|3760807_3761977_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW98179.1|3761979_3762843_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZW98180.1|3766206_3766911_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZW98181.1|3766904_3767699_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZW98182.1|3767695_3768661_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW98183.1|3768664_3769585_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW98184.1|3769681_3770845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98185.1|3771067_3771958_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZW98186.1|3771961_3772465_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98187.1|3772507_3773506_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98188.1|3773502_3774453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98189.1|3774568_3774829_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98190.1|3775020_3775971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98191.1|3776030_3776591_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZW98192.1|3778093_3778975_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98193.1|3779088_3780291_+	MFS transporter	NA	NA	NA	NA	NA
AZW98194.1|3780419_3782279_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZW98195.1|3782356_3783166_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW98196.1|3783236_3784238_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZW98197.1|3784269_3785130_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW98198.1|3785329_3786334_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZW98199.1|3786330_3787917_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98200.1|3787925_3788852_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZW98201.1|3788874_3789501_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZW98202.1|3789599_3790550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98658.1|3790546_3791683_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZW98203.1|3791736_3792513_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZW98204.1|3792537_3792996_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZW98659.1|3793135_3793777_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZW98205.1|3793841_3795224_+	cytochrome b	NA	NA	NA	NA	NA
AZW98206.1|3795243_3796098_+	cytochrome c1	NA	NA	NA	NA	NA
AZW98207.1|3796256_3796868_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZW98208.1|3796877_3797327_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZW98209.1|3797845_3797986_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98210.1|3797993_3798155_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZW98211.1|3798230_3798446_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98212.1|3798432_3799383_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	3809999	3870888	4106497	transposase,protease,tRNA	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
AZW98221.1|3809999_3810950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98222.1|3811680_3812661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98223.1|3812674_3813799_+	CoA transferase	NA	NA	NA	NA	NA
AZW98224.1|3813806_3815561_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZW98225.1|3815667_3816567_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98226.1|3816631_3817615_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZW98227.1|3817750_3818731_+	AEC family transporter	NA	NA	NA	NA	NA
AZW98228.1|3818747_3820139_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AZW98229.1|3820290_3820827_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZW98660.1|3820898_3822143_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZW98230.1|3822285_3822924_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98231.1|3823010_3824900_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZW98232.1|3824896_3825838_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZW98233.1|3825943_3826993_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZW98234.1|3827245_3827947_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZW98235.1|3827943_3828642_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZW98236.1|3828642_3829998_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZW98237.1|3829994_3830486_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZW98238.1|3830504_3831461_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98239.1|3832871_3834974_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98240.1|3835144_3836188_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98241.1|3836231_3836975_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98242.1|3837996_3838407_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZW98243.1|3839356_3840154_+	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZW98244.1|3840252_3841203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98245.1|3841199_3842150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98246.1|3842236_3843187_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98247.1|3843301_3844303_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZW98248.1|3844393_3844960_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZW98249.1|3845278_3847192_+	phosphomethylpyrimidine synthase	NA	NA	NA	NA	NA
AZW98250.1|3847233_3848664_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZW98251.1|3848776_3850189_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZW98252.1|3850205_3850901_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98253.1|3851119_3852070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98254.1|3852094_3852994_-	virginiamycin B lyase	NA	NA	NA	NA	NA
AZW98255.1|3853148_3853697_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZW98256.1|3853735_3854455_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZW98257.1|3854526_3857469_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZW98258.1|3858062_3860858_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZW98259.1|3861315_3862248_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZW98260.1|3862359_3863709_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZW98261.1|3863740_3864466_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZW98661.1|3864516_3865368_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98262.1|3865497_3866184_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZW98263.1|3866183_3866828_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZW98264.1|3866884_3867160_+	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZW98265.1|3867185_3867482_+	YciI family protein	NA	NA	NA	NA	NA
AZW98266.1|3867482_3868307_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZW98267.1|3868303_3869353_+	cyclase	NA	NA	NA	NA	NA
AZW98268.1|3869457_3869781_-	PsiF repeat family protein	NA	NA	NA	NA	NA
AZW98269.1|3869937_3870888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025351	Bordetella pertussis strain H813 chromosome, complete genome	4106497	4005565	4070477	4106497	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZW98382.1|4005565_4006051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98383.1|4006269_4007250_+	protein BugT	NA	NA	NA	NA	NA
AZW98384.1|4007516_4008326_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZW98385.1|4008365_4009046_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZW98386.1|4009039_4009498_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZW98387.1|4009509_4009872_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZW98388.1|4009954_4010638_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZW98389.1|4010693_4011002_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZW98390.1|4011020_4011335_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZW98391.1|4011331_4013806_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZW98392.1|4013813_4015205_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZW98393.1|4015201_4015387_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZW98394.1|4015365_4016067_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZW98395.1|4016063_4016885_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZW98670.1|4016865_4017990_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZW98396.1|4017982_4019002_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZW98397.1|4019207_4020242_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZW98671.1|4020342_4021134_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZW98398.1|4021216_4021591_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZW98399.1|4021568_4022978_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZW98400.1|4022970_4024353_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZW98401.1|4024687_4026292_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZW98402.1|4026327_4027341_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW98403.1|4027351_4028278_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW98404.1|4028668_4029619_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98405.1|4029788_4031015_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZW98406.1|4031214_4032081_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZW98407.1|4032073_4033036_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZW98408.1|4033136_4034087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98409.1|4034185_4035136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98410.1|4035234_4036185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZW98411.1|4036181_4037675_-	RND transporter	NA	NA	NA	NA	NA
AZW98412.1|4037671_4040779_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZW98413.1|4040775_4043844_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZW98414.1|4043840_4045091_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZW98415.1|4045271_4046033_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZW98416.1|4046065_4046716_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZW98417.1|4046718_4047558_-	prepilin peptidase	NA	NA	NA	NA	NA
AZW98418.1|4047798_4048542_+	hypothetical protein	NA	NA	NA	NA	NA
AZW98419.1|4048624_4048972_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZW98420.1|4049069_4049912_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZW98421.1|4049956_4050844_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZW98422.1|4050870_4051059_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZW98423.1|4051156_4052614_+	MFS transporter	NA	NA	NA	NA	NA
AZW98424.1|4052600_4054127_+	glycerol kinase	NA	NA	NA	NA	NA
AZW98425.1|4054145_4054613_-	hypothetical protein	NA	NA	NA	NA	NA
AZW98426.1|4054612_4055635_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZW98427.1|4055755_4056496_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZW98428.1|4056550_4057651_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW98429.1|4057652_4058843_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZW98430.1|4058962_4059979_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZW98431.1|4060297_4060969_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZW98432.1|4060965_4061874_+	ABC transporter permease	NA	NA	NA	NA	NA
AZW98433.1|4062085_4062733_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZW98434.1|4066584_4067661_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZW98435.1|4067671_4068481_-	transcriptional regulator	NA	NA	NA	NA	NA
AZW98436.1|4068570_4069344_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZW98437.1|4069526_4070477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
