The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	0	123122	4103241	tRNA,protease,transposase	Planktothrix_phage(16.67%)	111	NA	NA
AZX41783.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZX41784.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZX41785.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZX41786.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZX41787.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZX41788.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZX41789.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZX41790.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZX41791.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZX41792.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZX41793.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZX41794.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZX41795.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZX41796.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZX45190.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZX41797.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41798.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZX41799.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX41800.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41801.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZX41802.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41803.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZX41804.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZX45191.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX41805.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX41806.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX41807.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41808.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZX41809.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZX41810.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX41811.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZX41812.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX41813.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZX41814.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZX41815.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZX41816.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZX41817.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41818.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41819.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX41820.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41821.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZX41822.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZX41823.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41824.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZX41825.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZX41826.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZX41827.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX41828.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX41829.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX41830.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41831.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZX41832.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX41833.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41834.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41835.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZX41836.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZX41837.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZX41838.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX41839.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41840.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41841.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZX41842.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZX41843.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX41844.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZX41845.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45192.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41846.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZX41847.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45193.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41848.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZX41849.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZX41850.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZX41851.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZX41852.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZX41853.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZX41854.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZX41855.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZX41856.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX41857.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZX41858.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZX41859.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZX41860.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41861.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZX41862.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZX41863.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX41864.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZX41865.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41866.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX41867.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZX41868.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZX41869.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZX41870.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZX41871.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZX41872.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZX41873.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZX41874.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZX41875.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41876.1|108476_109805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41877.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX41878.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZX41879.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX41880.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX45194.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZX41881.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41882.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX41883.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX41884.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX41885.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX41886.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZX41887.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZX41888.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	165942	226453	4103241	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZX41920.1|165942_166893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41921.1|168336_169239_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41922.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
AZX41923.1|170176_171559_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZX41924.1|171592_172222_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZX41925.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZX41926.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45199.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
AZX41927.1|175350_176301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41928.1|177416_177944_+	lipoprotein	NA	NA	NA	NA	NA
AZX41929.1|178035_178851_+	lipoprotein	NA	NA	NA	NA	NA
AZX41930.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX41931.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZX41932.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
AZX41933.1|182382_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZX41934.1|183474_185379_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZX41935.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZX41936.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZX41937.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
AZX41938.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZX45200.1|190579_191026_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZX41939.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
AZX41940.1|191804_194075_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZX41941.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX41942.1|195454_196405_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41943.1|196450_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZX41944.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX41945.1|198427_199528_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZX41946.1|199609_199984_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZX41947.1|200043_202908_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZX41948.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX41949.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
AZX41950.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX41951.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX41952.1|207791_208115_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZX41953.1|208219_209269_-	cyclase	NA	NA	NA	NA	NA
AZX41954.1|209265_210090_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZX41955.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
AZX41956.1|210412_210688_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZX41957.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX41958.1|211388_212075_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX45201.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX41959.1|213106_213832_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZX41960.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZX41961.1|215324_216257_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX41962.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZX41963.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZX41964.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZX41965.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZX41966.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZX41967.1|225502_226453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	266622	398593	4103241	integrase,tRNA,transposase	Klosneuvirus(10.71%)	116	309294:309311	353934:353951
AZX42000.1|266622_267573_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42001.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42002.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX42003.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZX42004.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZX42005.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZX42006.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZX42007.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZX42008.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX42009.1|278189_279140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42010.1|279448_280141_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZX42011.1|280514_281015_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZX42012.1|281121_282042_+	bestrophin	NA	NA	NA	NA	NA
AZX42013.1|282058_282535_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX42014.1|282628_284479_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZX42015.1|284534_285293_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX45203.1|285320_286793_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZX42016.1|286827_287607_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZX42017.1|287619_288453_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX42018.1|288461_289235_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZX42019.1|289231_290296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42020.1|290447_293075_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZX42021.1|293138_295760_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42022.1|296687_297146_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42023.1|297424_299668_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX42024.1|299864_301889_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZX42025.1|302012_302975_-	immunogenic protein	NA	NA	NA	NA	NA
AZX42026.1|303186_304326_+	alanine racemase	NA	NA	NA	NA	NA
AZX42027.1|304348_305314_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42028.1|305509_306700_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZX42029.1|306713_306959_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZX42030.1|306987_309009_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZX45204.1|309055_310663_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
309294:309311	attL	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZX42031.1|310763_311933_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX42032.1|314814_315765_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42033.1|315788_316847_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX42034.1|316921_317296_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42035.1|317850_318801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42036.1|320357_321203_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX42037.1|321290_322454_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX45205.1|322872_323844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42038.1|323882_325310_-	amidase	NA	NA	NA	NA	NA
AZX42039.1|325429_326221_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42040.1|326339_328793_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZX42041.1|328887_330003_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZX42042.1|329999_331409_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZX42043.1|331814_331949_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZX42044.1|332044_332416_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZX42045.1|332412_332685_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZX42046.1|332733_334425_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZX42047.1|334655_335606_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42048.1|336063_336987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42049.1|336995_337394_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42050.1|337635_339606_+	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZX42051.1|341092_342082_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZX42052.1|342078_342279_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX42053.1|342279_342399_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42054.1|342391_342754_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZX42055.1|342743_343931_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZX42056.1|343964_344492_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42057.1|344549_345197_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZX42058.1|345193_346180_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZX42059.1|346183_346366_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42060.1|346362_346740_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42061.1|346973_347441_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZX42062.1|347476_348427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42063.1|348525_348768_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42064.1|348934_349576_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42065.1|349586_350537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42066.1|350646_351042_-	RidA family protein	NA	NA	NA	NA	NA
AZX42067.1|351211_351913_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX42068.1|352176_353037_+	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZX42069.1|353111_353447_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZX42070.1|353587_354733_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
353934:353951	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZX42071.1|354760_355420_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AZX42072.1|356424_356631_+	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZX42073.1|356703_356865_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42074.1|356896_357028_+	entericidin	NA	NA	NA	NA	NA
AZX42075.1|357474_364377_+	autotransporter BatB	NA	NA	NA	NA	NA
AZX42076.1|364410_365010_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZX42077.1|365282_366260_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42078.1|366273_367848_+	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZX42079.1|367855_368596_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42080.1|368619_369384_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX42081.1|369428_369764_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZX42082.1|369817_370747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42083.1|370706_371657_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42084.1|371775_372720_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZX42085.1|372716_373958_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZX42086.1|374119_375070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42087.1|375066_375741_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42088.1|375825_376821_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42089.1|376975_378265_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX42090.1|378516_378708_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZX42091.1|378814_380134_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZX42092.1|380204_380774_-	bacterioferritin	NA	NA	NA	NA	NA
AZX42093.1|380915_381542_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZX42094.1|381548_382151_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42095.1|382147_382804_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZX42096.1|382800_383427_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZX42097.1|383449_384388_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZX42098.1|384453_385404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42099.1|385390_385597_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42100.1|385502_386015_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZX42101.1|386116_387367_-	kynureninase	NA	NA	NA	NA	NA
AZX42102.1|387455_387989_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX42103.1|388089_389202_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZX42104.1|389315_390224_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZX42105.1|390366_390843_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42106.1|390877_391894_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZX42107.1|392007_393249_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZX42108.1|394382_395348_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42109.1|395394_395886_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZX42110.1|395981_396881_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZX42111.1|397010_397646_+	transporter	NA	NA	NA	NA	NA
AZX42112.1|397642_398593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	670270	770734	4103241	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZX42352.1|670270_671221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42353.1|671919_672303_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42354.1|672360_672963_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZX45214.1|672980_673382_-	DoxX family protein	NA	NA	NA	NA	NA
AZX42355.1|673515_674409_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42356.1|674405_674987_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZX42357.1|675781_676516_+	arginyltransferase	NA	NA	NA	NA	NA
AZX42358.1|676556_677606_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZX42359.1|677753_678332_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZX42360.1|678718_679696_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZX42361.1|679789_684184_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZX42362.1|684384_685233_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42363.1|685391_686204_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZX42364.1|686259_687210_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42365.1|687308_688109_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42366.1|688170_688554_+	thioredoxin	NA	NA	NA	NA	NA
AZX42367.1|688565_689999_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZX42368.1|690205_690535_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZX45215.1|690537_691206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX42369.1|691469_692390_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZX42370.1|692436_692649_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZX42371.1|692671_693094_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZX42372.1|693110_694211_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX42373.1|694307_695825_-	peptidase	NA	NA	NA	NA	NA
AZX42374.1|695900_696740_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZX42375.1|696761_697643_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZX42376.1|697724_698819_-	porin	NA	NA	NA	NA	NA
AZX42377.1|699112_700063_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45216.1|700137_701079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42378.1|701162_701522_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42379.1|701903_702941_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42380.1|703257_704598_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZX42381.1|704607_705060_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42382.1|705156_706338_+	monooxygenase	NA	NA	NA	NA	NA
AZX42383.1|706397_707429_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZX42384.1|707469_707709_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX42385.1|707778_709368_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZX42386.1|709367_709916_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZX42387.1|709996_710569_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZX42388.1|710587_711499_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZX42389.1|711572_712541_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZX42390.1|712663_713737_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZX42391.1|713741_715562_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZX42392.1|715638_716589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42393.1|716677_717013_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZX42394.1|717146_717797_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZX42395.1|717818_719237_-	amidase	NA	NA	NA	NA	NA
AZX42396.1|719306_720062_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45217.1|720030_720789_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX42397.1|720799_721681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX42398.1|721697_722405_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZX42399.1|722407_723166_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZX42400.1|723375_725118_+	sulfite reductase	NA	NA	NA	NA	NA
AZX42401.1|725110_725635_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZX42402.1|725674_726469_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42403.1|726636_727710_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42404.1|727808_728759_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42405.1|729010_729223_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45218.1|729288_729900_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZX42406.1|730379_730700_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42407.1|730692_731391_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42408.1|731405_731627_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42409.1|731644_732595_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45219.1|733270_733720_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZX42410.1|733706_734984_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZX42411.1|734986_736405_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZX45220.1|736433_737489_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZX42412.1|737494_737737_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZX42413.1|737859_738462_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZX42414.1|738890_739841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42415.1|739858_740506_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZX42416.1|740515_740767_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42417.1|740829_741312_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZX42418.1|741313_741514_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42419.1|741513_741909_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZX42420.1|741905_742304_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZX42421.1|742300_742723_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42422.1|742730_743231_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZX42423.1|743485_744004_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZX42424.1|744013_744343_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZX42425.1|744360_744651_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZX42426.1|744676_747289_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZX42427.1|747298_747658_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42428.1|747725_748259_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZX42429.1|748255_748645_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZX42430.1|748637_752594_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZX42431.1|752598_753015_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42432.1|753233_753497_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZX42433.1|753496_754309_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42434.1|754313_754556_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42435.1|754534_755086_+	lysozyme	NA	NA	NA	NA	NA
AZX42436.1|755067_755601_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZX42437.1|755597_755879_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42438.1|756221_756422_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42439.1|756428_757100_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZX42440.1|757455_758142_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX42441.1|758122_758695_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZX42442.1|758760_760491_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZX42443.1|760543_760972_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX42444.1|760974_761655_+	protein TolQ	NA	NA	NA	NA	NA
AZX42445.1|761654_762113_+	protein TolR	NA	NA	NA	NA	NA
AZX42446.1|762149_763124_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZX42447.1|763140_764457_+	protein TolB	NA	NA	NA	NA	NA
AZX42448.1|764488_764986_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZX42449.1|765072_765762_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZX42450.1|765761_766811_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX42451.1|766807_767602_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZX42452.1|767770_768121_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42453.1|768096_768654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42454.1|769578_769797_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42455.1|769783_770734_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	797659	870821	4103241	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZX42476.1|797659_798610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42477.1|799264_800362_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZX42478.1|800395_801661_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZX42479.1|801818_802769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42480.1|803012_803603_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZX45222.1|803618_806063_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZX42481.1|806182_807154_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42482.1|807285_807810_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZX42483.1|807769_808720_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42484.1|808941_811137_-	DNA methylase	NA	NA	NA	NA	NA
AZX42485.1|811209_811617_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX42486.1|811739_812690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42487.1|812805_813249_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX42488.1|813311_814106_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX42489.1|814271_815408_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZX42490.1|815478_816612_-	GTPase ObgE	NA	NA	NA	NA	NA
AZX42491.1|816761_817022_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZX42492.1|817055_817367_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZX42493.1|817791_818940_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZX42494.1|819054_820020_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZX42495.1|820288_821155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42496.1|821285_823334_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX42497.1|823351_825349_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX42498.1|825383_826721_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZX42499.1|826983_828837_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42500.1|828891_830373_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX42501.1|830388_830976_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZX45223.1|831058_831238_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42502.1|831424_836545_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZX42503.1|836622_838761_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZX42504.1|838757_840080_+	protein CyaD	NA	NA	NA	NA	NA
AZX42505.1|840081_841506_+	protein CyaE	NA	NA	NA	NA	NA
AZX42506.1|841596_842505_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42507.1|842569_843484_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42508.1|844321_845005_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX42509.1|845021_845765_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZX42510.1|845794_846655_+	aminotransferase	NA	NA	NA	NA	NA
AZX42511.1|846662_847229_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42512.1|847317_848274_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42513.1|848318_849071_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX42514.1|849067_850813_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZX42515.1|850897_851632_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42516.1|851948_852971_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZX42517.1|852986_853709_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42518.1|853853_854861_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZX42519.1|854901_856434_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZX42520.1|856430_857549_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZX42521.1|857545_858328_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX42522.1|858339_859203_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZX45224.1|859221_860319_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42523.1|860387_861314_-	VOC family protein	NA	NA	NA	NA	NA
AZX42524.1|861348_863043_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX42525.1|863242_864178_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZX42526.1|864283_865234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42527.1|865332_865989_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZX42528.1|866136_868845_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZX42529.1|868854_869874_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZX42530.1|869870_870821_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	903568	952832	4103241	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZX42559.1|903568_904519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45225.1|904491_905091_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42560.1|905092_905527_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX42561.1|905523_905958_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42562.1|905941_906745_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZX42563.1|906761_907577_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZX42564.1|907573_908389_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZX42565.1|908535_909237_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42566.1|909264_911223_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZX42567.1|911305_912256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42568.1|912476_913145_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX42569.1|913268_914375_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZX42570.1|914387_917501_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZX42571.1|917497_918991_+	RND transporter	NA	NA	NA	NA	NA
AZX42572.1|919005_919677_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX42573.1|919720_920215_-	azurin	NA	NA	NA	NA	NA
AZX42574.1|920355_921003_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX45226.1|921106_923155_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZX42575.1|923151_925164_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZX42576.1|925189_926524_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX42577.1|926632_927625_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42578.1|927691_929776_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZX42579.1|929800_930772_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42580.1|930900_931902_-	peptidase M14	NA	NA	NA	NA	NA
AZX42581.1|931935_933177_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZX42582.1|933257_934181_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZX42583.1|934258_935083_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX42584.1|935279_936296_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX42585.1|936492_937476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42586.1|939074_940463_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX42587.1|940493_941483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42588.1|941593_942826_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX42589.1|943107_943908_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42590.1|943930_946162_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZX42591.1|946949_947396_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZX42592.1|947417_948164_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZX42593.1|948307_949285_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZX42594.1|949918_950530_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZX42595.1|950523_951741_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZX42596.1|951881_952832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	962444	1027384	4103241	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZX42605.1|962444_963395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42606.1|963391_965242_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZX42607.1|965622_966282_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZX42608.1|966369_966522_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42609.1|966630_966798_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42610.1|966809_967490_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZX42611.1|967771_968488_+	flagellar brake protein	NA	NA	NA	NA	NA
AZX42612.1|968502_969804_-	phospholipase	NA	NA	NA	NA	NA
AZX42613.1|971948_974837_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZX42614.1|975060_976413_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX42615.1|976441_976963_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZX42616.1|976959_978414_+	carboxylase	NA	NA	NA	NA	NA
AZX42617.1|978448_978697_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42618.1|978802_979678_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42619.1|979703_980759_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42620.1|980771_981563_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42621.1|981595_982966_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZX42622.1|984142_985093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42623.1|985145_985367_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42624.1|985526_985739_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42625.1|985858_986977_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZX42626.1|987073_987289_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42627.1|987482_987734_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42628.1|987846_988797_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42629.1|988793_989177_-	ferredoxin	NA	NA	NA	NA	NA
AZX42630.1|989231_991049_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZX45228.1|991195_992023_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZX42631.1|992068_993049_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZX42632.1|993045_993258_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42633.1|993254_994436_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZX42634.1|994599_995334_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZX42635.1|995335_997948_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZX42636.1|998083_999997_-	S9 family peptidase	NA	NA	NA	NA	NA
AZX42637.1|1000612_1001023_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX42638.1|1001120_1002206_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZX42639.1|1002304_1003255_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42640.1|1003251_1004226_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX42641.1|1004350_1005262_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZX45229.1|1005538_1005931_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZX42642.1|1006060_1007011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42643.1|1007040_1007223_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZX42644.1|1007261_1007519_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42645.1|1007995_1009177_-	MFS transporter	NA	NA	NA	NA	NA
AZX42646.1|1009392_1010070_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX42647.1|1010066_1010840_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZX42648.1|1010917_1011499_-	OmpA family protein	NA	NA	NA	NA	NA
AZX42649.1|1011869_1014551_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZX42650.1|1014550_1015684_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZX42651.1|1015676_1016762_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZX42652.1|1016848_1017748_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZX42653.1|1017744_1019073_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZX42654.1|1019087_1019759_+	cytidylate kinase	NA	NA	NA	NA	NA
AZX42655.1|1019931_1021662_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZX42656.1|1021663_1022023_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZX42657.1|1022214_1022529_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZX42658.1|1022571_1023792_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZX42659.1|1023788_1024730_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZX42660.1|1024726_1025716_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZX42661.1|1025750_1026335_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZX42662.1|1026433_1027384_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1046784	1109935	4103241	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZX42677.1|1046784_1047735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42678.1|1047839_1048889_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZX42679.1|1049026_1050043_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX42680.1|1051551_1052124_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZX42681.1|1052183_1052915_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZX45231.1|1052966_1053884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42682.1|1054691_1057871_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZX42683.1|1057867_1059250_+	multidrug transporter	NA	NA	NA	NA	NA
AZX42684.1|1059319_1059571_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZX42685.1|1059716_1060367_-	SCO family protein	NA	NA	NA	NA	NA
AZX42686.1|1060517_1062632_-	M3 family peptidase	NA	NA	NA	NA	NA
AZX42687.1|1062707_1063559_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZX42688.1|1063555_1064182_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX42689.1|1064178_1065933_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZX42690.1|1066225_1068931_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZX42691.1|1068943_1070605_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZX42692.1|1070617_1072408_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZX42693.1|1072629_1073805_-	flagellin FliC	NA	NA	NA	NA	NA
AZX42694.1|1073847_1074798_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42695.1|1074896_1075637_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZX42696.1|1075831_1077868_+	transketolase	NA	NA	NA	NA	NA
AZX42697.1|1077885_1078896_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZX42698.1|1079013_1080207_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZX42699.1|1080236_1081010_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX42700.1|1081006_1082197_-	acetate kinase	NA	NA	NA	NA	NA
AZX42701.1|1082222_1083161_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZX45232.1|1083157_1085506_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZX42702.1|1085660_1086368_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX42703.1|1086405_1087539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42704.1|1087815_1088364_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZX42705.1|1088382_1088868_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX42706.1|1089045_1089984_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZX42707.1|1089986_1090304_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42708.1|1090349_1091294_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42709.1|1092974_1093625_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZX42710.1|1093678_1094014_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42711.1|1094010_1094871_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZX42712.1|1094887_1095169_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42713.1|1095242_1095506_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZX42714.1|1095749_1096700_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42715.1|1096998_1097736_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZX42716.1|1098171_1098495_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZX42717.1|1098529_1099090_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZX42718.1|1099210_1100086_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZX42719.1|1100098_1101046_+	motility protein MotB	NA	NA	NA	NA	NA
AZX42720.1|1101147_1101441_+	response regulator	NA	NA	NA	NA	NA
AZX42721.1|1101467_1103525_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZX42722.1|1103539_1104040_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZX42723.1|1104113_1105820_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZX42724.1|1106683_1107736_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZX42725.1|1107788_1108178_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZX42726.1|1108186_1108819_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZX42727.1|1108918_1109935_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1115919	1184086	4103241	holin,tRNA,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZX42732.1|1115919_1117347_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZX42733.1|1118284_1119301_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX42734.1|1119633_1120569_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZX42735.1|1120618_1122499_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZX42736.1|1122565_1122910_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZX42737.1|1123054_1124191_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZX42738.1|1124187_1125261_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZX42739.1|1125418_1126855_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZX45234.1|1126945_1127587_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX42740.1|1127922_1128939_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX42741.1|1129271_1132019_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZX45235.1|1132085_1133507_-	siroheme synthase	NA	NA	NA	NA	NA
AZX42742.1|1133770_1134487_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42743.1|1134571_1134889_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZX42744.1|1134929_1135343_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX42745.1|1135344_1135704_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42746.1|1135746_1137291_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZX42747.1|1137374_1138205_+	transglycosylase	NA	NA	NA	NA	NA
AZX42748.1|1138239_1139394_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZX42749.1|1140430_1142719_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZX42750.1|1143925_1144390_+	barstar family protein 2	NA	NA	NA	NA	NA
AZX42751.1|1144416_1145367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45236.1|1145734_1146511_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZX42752.1|1146555_1147413_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZX42753.1|1147434_1148451_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZX42754.1|1148585_1149626_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZX42755.1|1149820_1151902_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZX42756.1|1152137_1153631_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZX42757.1|1153861_1154656_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX42758.1|1154876_1156235_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZX42759.1|1156231_1157074_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZX42760.1|1157092_1158979_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZX42761.1|1159216_1159849_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZX42762.1|1159867_1160470_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42763.1|1160621_1161572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42764.1|1162374_1163175_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42765.1|1163218_1164205_-	homoserine kinase	NA	NA	NA	NA	NA
AZX42766.1|1164344_1165358_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZX42767.1|1165354_1166305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42768.1|1166417_1166876_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZX42769.1|1166912_1168226_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42770.1|1168243_1168615_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZX42771.1|1168611_1170075_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZX42772.1|1170167_1170944_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX42773.1|1170925_1173805_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZX42774.1|1173987_1174938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42775.1|1175105_1175930_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZX42776.1|1175929_1176808_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX42777.1|1177712_1178828_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42778.1|1178835_1179651_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZX42779.1|1179647_1181513_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZX42780.1|1181591_1182224_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX42781.1|1182220_1182523_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42782.1|1182565_1184086_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1366375	1434862	4103241	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZX42925.1|1366375_1367326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42926.1|1368094_1368733_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZX45246.1|1369622_1370069_+	glutamate racemase	NA	NA	NA	NA	NA
AZX42927.1|1370150_1370852_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZX42928.1|1370852_1371620_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZX42929.1|1371616_1372855_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZX42930.1|1372854_1373781_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZX42931.1|1373883_1374999_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42932.1|1375014_1375965_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42933.1|1376318_1376900_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZX42934.1|1376896_1377730_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZX45247.1|1377940_1379254_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZX42935.1|1379430_1380312_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZX42936.1|1380331_1381183_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZX42937.1|1381235_1382324_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZX42938.1|1382434_1383562_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45248.1|1383796_1384408_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX42939.1|1384506_1385457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42940.1|1385678_1386056_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZX45249.1|1386203_1386701_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZX42941.1|1386697_1387225_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZX42942.1|1387358_1388174_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX42943.1|1388186_1389368_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZX42944.1|1389415_1390309_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZX45250.1|1390435_1390906_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42945.1|1391031_1391859_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZX42946.1|1391887_1392664_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZX42947.1|1392660_1392954_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZX42948.1|1392950_1393415_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX42949.1|1393426_1394212_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZX42950.1|1394237_1394738_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZX42951.1|1394820_1395999_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZX42952.1|1397626_1397962_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZX42953.1|1398149_1399598_+	CoA transferase	NA	NA	NA	NA	NA
AZX42954.1|1399655_1400000_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZX42955.1|1400106_1400646_-	peroxiredoxin	NA	NA	NA	NA	NA
AZX42956.1|1400738_1401689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42957.1|1401675_1402158_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42958.1|1402427_1402859_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42959.1|1403040_1403445_-	DoxX family protein	NA	NA	NA	NA	NA
AZX42960.1|1404681_1405005_+	hypothetical protein	NA	NA	NA	NA	NA
AZX42961.1|1405007_1405895_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZX42962.1|1405927_1406353_-	universal stress protein	NA	NA	NA	NA	NA
AZX42963.1|1406424_1406778_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42964.1|1407017_1407524_-	hypothetical protein	NA	NA	NA	NA	NA
AZX42965.1|1407562_1408894_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZX42966.1|1408953_1409769_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZX42967.1|1409765_1410620_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZX45251.1|1413682_1416226_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZX42968.1|1417592_1419347_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZX42969.1|1419343_1421464_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZX42970.1|1421468_1423664_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZX45252.1|1423660_1427002_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZX42971.1|1429804_1430755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX42972.1|1430820_1431000_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45253.1|1431116_1431839_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX42973.1|1431858_1433004_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZX42974.1|1433911_1434862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1495353	1550841	4103241	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZX43022.1|1495353_1496304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43023.1|1497505_1497952_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZX43024.1|1497944_1499420_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZX43025.1|1499416_1500172_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZX43026.1|1500164_1501175_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZX43027.1|1501164_1502841_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZX43028.1|1503153_1503486_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZX43029.1|1503499_1503895_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43030.1|1503904_1504231_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZX43031.1|1504227_1504554_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX43032.1|1504480_1505503_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZX43033.1|1505499_1505880_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZX43034.1|1505897_1506326_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZX43035.1|1506333_1507707_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZX45257.1|1507847_1508225_-	flagellar protein	NA	NA	NA	NA	NA
AZX43036.1|1508487_1509795_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZX43037.1|1509855_1510686_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZX43038.1|1510682_1511171_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZX43039.1|1511212_1512733_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZX45258.1|1512776_1513253_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX43040.1|1514056_1516654_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZX43041.1|1516683_1517505_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZX43042.1|1518231_1518981_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZX43043.1|1519113_1520043_+	elongation factor Ts	NA	NA	NA	NA	NA
AZX43044.1|1520140_1520857_+	UMP kinase	NA	NA	NA	NA	NA
AZX43045.1|1520871_1521432_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZX43046.1|1521469_1522363_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZX43047.1|1522382_1523240_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZX43048.1|1523236_1524436_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZX43049.1|1524475_1525810_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZX43050.1|1525862_1528199_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZX45259.1|1528324_1528888_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZX43051.1|1528896_1529988_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZX43052.1|1530059_1530515_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZX43053.1|1530515_1531310_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZX43054.1|1531306_1532488_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZX43055.1|1532474_1533080_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZX43056.1|1533076_1533850_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZX43057.1|1533861_1534689_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZX43058.1|1534850_1537214_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZX43059.1|1537281_1538001_-	GMP synthase	NA	NA	NA	NA	NA
AZX43060.1|1538124_1538550_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZX43061.1|1538584_1539535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43062.1|1539652_1540579_+	paraslipin	NA	NA	NA	NA	NA
AZX43063.1|1540644_1541802_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZX43064.1|1541782_1542250_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZX43065.1|1542397_1543348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43066.1|1543364_1543799_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZX43067.1|1543788_1544139_+	RnfH family protein	NA	NA	NA	NA	NA
AZX43068.1|1544335_1545490_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX43069.1|1545486_1546659_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX43070.1|1546706_1547600_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZX43071.1|1547645_1548083_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZX43072.1|1548142_1548832_+	VIT family protein	NA	NA	NA	NA	NA
AZX43073.1|1548841_1549792_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43074.1|1549890_1550841_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1843406	1891421	4103241	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
AZX43318.1|1843406_1844357_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43319.1|1844455_1847056_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZX43320.1|1847162_1848167_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43321.1|1848275_1849616_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZX43322.1|1849656_1850685_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43323.1|1850880_1851426_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43324.1|1851422_1851983_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZX43325.1|1852081_1853032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43326.1|1853069_1853657_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZX43327.1|1853674_1854058_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZX43328.1|1855417_1856710_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZX43329.1|1856844_1857885_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZX43330.1|1857982_1858999_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX43331.1|1859266_1859914_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX43332.1|1860039_1860798_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZX45271.1|1860872_1861562_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZX43333.1|1861579_1862464_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZX43334.1|1862460_1863240_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZX43335.1|1863266_1863944_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45272.1|1864232_1864985_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43336.1|1865103_1866504_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZX43337.1|1866527_1866926_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZX43338.1|1867101_1867302_+	copper chaperone	NA	NA	NA	NA	NA
AZX43339.1|1867440_1868169_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZX43340.1|1868302_1869718_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZX43341.1|1869721_1870585_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZX43342.1|1870597_1871347_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZX43343.1|1871529_1873545_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZX45273.1|1873526_1874075_-	arylesterase	NA	NA	NA	NA	NA
AZX43344.1|1874151_1874871_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZX43345.1|1874969_1875920_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43346.1|1876018_1876969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43347.1|1877117_1877456_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZX43348.1|1877513_1877675_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZX43349.1|1877706_1877907_-	CsbD family protein	NA	NA	NA	NA	NA
AZX43350.1|1878172_1880746_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX43351.1|1880816_1883390_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZX43352.1|1885916_1886405_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZX43353.1|1886496_1887648_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX43354.1|1887701_1888523_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZX43355.1|1888561_1889791_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZX43356.1|1889919_1890360_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZX43357.1|1890304_1890484_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43358.1|1890470_1891421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1894814	1956019	4103241	tRNA,protease,transposase	Lake_Baikal_phage(21.43%)	53	NA	NA
AZX43363.1|1894814_1897676_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZX43364.1|1897665_1898631_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZX43365.1|1898690_1900685_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZX43366.1|1900783_1901734_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43367.1|1901730_1902105_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43368.1|1902366_1903575_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZX43369.1|1903571_1905872_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZX43370.1|1905924_1908537_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX43371.1|1908896_1910822_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZX43372.1|1910818_1911715_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZX43373.1|1911721_1912861_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZX43374.1|1912860_1913682_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZX43375.1|1915252_1915582_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX43376.1|1915964_1917221_+	autotransporter Phg	NA	NA	NA	NA	NA
AZX43377.1|1917295_1917577_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43378.1|1917618_1917939_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43379.1|1918245_1918449_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZX43380.1|1918532_1919099_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZX43381.1|1919444_1919645_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZX43382.1|1919756_1920335_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZX43383.1|1920513_1921824_+	trigger factor	NA	NA	NA	NA	NA
AZX43384.1|1921826_1922480_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZX43385.1|1922584_1923889_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZX43386.1|1924077_1926531_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZX43387.1|1926654_1927605_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43388.1|1927832_1929056_+	CoA transferase	NA	NA	NA	NA	NA
AZX43389.1|1929121_1930093_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX43390.1|1930105_1930561_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZX43391.1|1930574_1931378_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX43392.1|1931374_1931806_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43393.1|1931802_1932960_+	thiolase	NA	NA	NA	NA	NA
AZX43394.1|1932981_1933758_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZX43395.1|1935922_1936639_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZX43396.1|1936631_1937273_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZX43397.1|1937307_1938039_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43398.1|1938056_1938269_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43399.1|1938839_1939790_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43400.1|1941347_1942076_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZX43401.1|1942126_1943329_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZX43402.1|1943406_1945443_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZX43403.1|1945695_1946187_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZX43404.1|1946402_1946915_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZX43405.1|1946932_1948144_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZX43406.1|1948181_1948592_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZX43407.1|1948593_1948917_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZX43408.1|1948919_1949432_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZX43409.1|1949561_1951424_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZX43410.1|1951433_1951775_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZX43411.1|1951774_1951969_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZX43412.1|1952093_1952987_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZX43413.1|1952983_1953934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43414.1|1954058_1954868_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX43415.1|1955068_1956019_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	1983802	2035599	4103241	tRNA,protease,transposase	Klosneuvirus(22.22%)	50	NA	NA
AZX43435.1|1983802_1986427_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZX43436.1|1986413_1986668_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZX43437.1|1986734_1987316_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43438.1|1987619_1987880_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZX43439.1|1988045_1988669_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZX43440.1|1988668_1989442_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZX43441.1|1989438_1990647_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZX43442.1|1990672_1991146_-	RidA family protein	NA	NA	NA	NA	NA
AZX43443.1|1991219_1992170_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43444.1|1992268_1993219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43445.1|1993317_1994667_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZX43446.1|1995432_1996188_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZX43447.1|1996280_1999163_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZX43448.1|1999485_1999911_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZX43449.1|1999938_2001087_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZX43450.1|2001083_2001590_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZX43451.1|2001596_2002892_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZX43452.1|2002932_2004237_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZX43453.1|2004238_2004877_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43454.1|2004879_2006040_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZX43455.1|2006066_2007422_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZX43456.1|2007425_2008496_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZX43457.1|2008634_2008871_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZX43458.1|2008958_2010065_+	GTPase HflX	NA	NA	NA	NA	NA
AZX43459.1|2010030_2011335_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZX43460.1|2011353_2012253_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZX43461.1|2012436_2013594_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZX43462.1|2013658_2014966_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZX43463.1|2015079_2015619_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZX43464.1|2015896_2016109_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZX43465.1|2016128_2018159_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZX45275.1|2018958_2021127_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZX43466.1|2021536_2021836_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43467.1|2022120_2022534_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZX43468.1|2022493_2023444_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43469.1|2023430_2023631_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43470.1|2023643_2024729_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZX43471.1|2024744_2025506_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX43472.1|2025502_2026426_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZX43473.1|2026524_2027049_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZX43474.1|2027057_2027801_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZX43475.1|2027896_2028136_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43476.1|2028149_2028302_-	lipoprotein	NA	NA	NA	NA	NA
AZX43477.1|2028387_2029878_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZX43478.1|2029969_2030908_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZX43479.1|2030904_2031081_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZX43480.1|2031083_2031746_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZX45276.1|2033367_2033511_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZX43481.1|2033507_2034482_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43482.1|2034648_2035599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2041569	2097663	4103241	transposase	uncultured_Caudovirales_phage(20.0%)	55	NA	NA
AZX43488.1|2041569_2042520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43489.1|2043565_2045431_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZX45277.1|2045688_2047209_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZX43490.1|2047296_2047947_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZX43491.1|2048895_2050191_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZX43492.1|2050212_2051097_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43493.1|2051195_2052071_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZX43494.1|2052060_2052417_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZX43495.1|2052490_2053522_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX43496.1|2053651_2053831_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZX43497.1|2053928_2054453_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZX43498.1|2054463_2055300_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX43499.1|2055412_2055784_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX43500.1|2055780_2056332_+	ATPase	NA	NA	NA	NA	NA
AZX43501.1|2056347_2058039_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZX43502.1|2058087_2058768_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43503.1|2059015_2059480_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43504.1|2059649_2060579_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZX43505.1|2060591_2061239_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43506.1|2061312_2063130_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZX43507.1|2063213_2064164_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43508.1|2064816_2065767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43509.1|2065785_2066133_-	GFA family protein	NA	NA	NA	NA	NA
AZX43510.1|2066161_2067601_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZX43511.1|2067619_2068015_-	VOC family protein	NA	NA	NA	NA	NA
AZX43512.1|2068189_2068798_+	peptidase S16	NA	NA	NA	NA	NA
AZX43513.1|2068810_2069629_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZX43514.1|2069580_2070555_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX43515.1|2070583_2071645_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43516.1|2071641_2073858_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZX43517.1|2073871_2074330_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZX43518.1|2074487_2074832_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43519.1|2074988_2075894_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45278.1|2075980_2076994_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZX43520.1|2078973_2079990_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX43521.1|2080132_2081485_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZX43522.1|2081659_2081956_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43523.1|2083093_2084044_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43524.1|2084529_2084706_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43525.1|2084677_2085316_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43526.1|2085390_2086362_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX43527.1|2086365_2087220_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZX43528.1|2087238_2088060_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX43529.1|2088091_2088886_+	amidase	NA	NA	NA	NA	NA
AZX43530.1|2088934_2089540_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45279.1|2089536_2090331_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX43531.1|2090616_2092122_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZX43532.1|2092163_2092946_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZX43533.1|2093015_2093462_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43534.1|2093458_2094685_-	NnrS family protein	NA	NA	NA	NA	NA
AZX43535.1|2094677_2095082_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZX43536.1|2095241_2095544_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZX43537.1|2095540_2096491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43538.1|2096477_2096669_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43539.1|2096712_2097663_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2346377	2407725	4103241	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZX43724.1|2346377_2347328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43725.1|2347444_2348164_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43726.1|2348336_2349323_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43727.1|2349323_2349806_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX43728.1|2349809_2351093_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX43729.1|2351089_2352028_+	CoA ester lyase	NA	NA	NA	NA	NA
AZX43730.1|2352024_2353734_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZX43731.1|2353743_2354991_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZX45289.1|2356601_2357891_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZX43732.1|2359028_2359802_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZX43733.1|2360463_2361207_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43734.1|2361281_2362022_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43735.1|2362217_2363054_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43736.1|2363104_2363875_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZX43737.1|2363924_2364977_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZX43738.1|2364973_2365600_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZX43739.1|2365596_2366643_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZX43740.1|2366809_2367826_+	folate-binding protein	NA	NA	NA	NA	NA
AZX45290.1|2367924_2368875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43741.1|2371615_2372905_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZX43742.1|2373023_2373494_-	DNA-binding protein	NA	NA	NA	NA	NA
AZX43743.1|2373504_2374713_-	flavohemoprotein	NA	NA	NA	NA	NA
AZX43744.1|2374859_2375324_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZX43745.1|2375347_2376298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43746.1|2377282_2378056_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX43747.1|2378052_2379051_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43748.1|2379135_2379912_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZX43749.1|2380067_2381735_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZX43750.1|2382052_2383177_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43751.1|2383303_2383927_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43752.1|2383923_2385825_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX43753.1|2385873_2386668_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX43754.1|2386680_2387682_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZX43755.1|2387678_2388185_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZX43756.1|2388177_2389026_-	hydrolase	NA	NA	NA	NA	NA
AZX43757.1|2389123_2389666_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43758.1|2389709_2390660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43759.1|2390815_2391142_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZX43760.1|2391138_2391423_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZX43761.1|2391419_2391899_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZX43762.1|2391895_2393524_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZX43763.1|2393520_2393865_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZX43764.1|2393864_2396798_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZX43765.1|2397956_2398907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43766.1|2399005_2399302_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43767.1|2399408_2400326_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43768.1|2400330_2401044_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX43769.1|2401057_2402029_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX43770.1|2403748_2404129_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43771.1|2404132_2405320_+	MFS transporter	NA	NA	NA	NA	NA
AZX45291.1|2405758_2406481_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZX43772.1|2406774_2407725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2428516	2499670	4103241	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZX43787.1|2428516_2429467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43788.1|2430019_2431645_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZX45296.1|2431694_2432729_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZX43789.1|2432731_2434078_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45297.1|2434074_2435589_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZX43790.1|2435579_2436590_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43791.1|2437063_2438005_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZX43792.1|2438013_2438982_-	AAA family ATPase	NA	NA	NA	NA	NA
AZX43793.1|2440521_2441490_+	transporter	NA	NA	NA	NA	NA
AZX43794.1|2441667_2442657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX43795.1|2442703_2443462_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX43796.1|2443651_2444389_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZX43797.1|2444487_2445438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43798.1|2445622_2446405_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZX43799.1|2446398_2447100_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX43800.1|2447339_2447942_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43801.1|2449268_2450219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43802.1|2450215_2451772_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZX43803.1|2451764_2452538_-	oxidoreductase	NA	NA	NA	NA	NA
AZX43804.1|2452596_2453547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43805.1|2453628_2454804_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZX43806.1|2454817_2456875_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX43807.1|2456871_2457897_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZX43808.1|2457908_2459198_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZX43809.1|2459220_2460318_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZX43810.1|2460314_2461205_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX43811.1|2461201_2463286_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZX43812.1|2463317_2464487_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZX43813.1|2464528_2465269_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX43814.1|2465268_2466039_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZX43815.1|2466894_2467680_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZX43816.1|2467706_2469791_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43817.1|2469958_2471914_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZX45298.1|2472237_2472738_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZX43818.1|2472836_2474363_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZX45299.1|2474500_2475388_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43819.1|2475402_2476356_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZX43820.1|2476407_2478498_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZX43821.1|2478513_2478900_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZX43822.1|2481593_2482397_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZX43823.1|2483690_2484593_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43824.1|2484657_2485434_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZX43825.1|2485755_2486805_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43826.1|2486928_2488599_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZX43827.1|2488603_2489398_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZX43828.1|2489496_2490447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43829.1|2490466_2491372_-	pirin family protein	NA	NA	NA	NA	NA
AZX43830.1|2491449_2492148_-	pirin family protein	NA	NA	NA	NA	NA
AZX43831.1|2492307_2493252_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43832.1|2493261_2494752_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZX43833.1|2494748_2495816_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZX43834.1|2495879_2497292_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZX43835.1|2497477_2498698_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZX43836.1|2498719_2499670_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2540610	2602457	4103241	tRNA,protease,transposase	Planktothrix_phage(14.29%)	60	NA	NA
AZX43875.1|2540610_2541561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43876.1|2541659_2542268_-	recombination protein RecR	NA	NA	NA	NA	NA
AZX43877.1|2542318_2542645_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZX43878.1|2542691_2544917_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZX43879.1|2545584_2548989_-	nuclease	NA	NA	NA	NA	NA
AZX43880.1|2549001_2551662_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43881.1|2551865_2553068_-	MFS transporter	NA	NA	NA	NA	NA
AZX43882.1|2553754_2554867_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZX43883.1|2554873_2555824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43884.1|2555922_2556324_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZX43885.1|2556396_2556975_-|protease	protease	protease	NA	NA	NA	NA
AZX45302.1|2557092_2557581_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZX43886.1|2557594_2558527_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZX43887.1|2558564_2559452_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZX43888.1|2559609_2561304_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZX43889.1|2561320_2562577_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX43890.1|2562714_2563260_-	acyl dehydratase	NA	NA	NA	NA	NA
AZX43891.1|2563291_2564851_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZX43892.1|2564979_2565732_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZX43893.1|2565753_2566446_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX43894.1|2566468_2567260_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43895.1|2567286_2568192_-	agmatinase	NA	NA	NA	NA	NA
AZX43896.1|2568384_2569221_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX43897.1|2569312_2570335_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZX43898.1|2570471_2571524_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZX43899.1|2571528_2572719_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZX43900.1|2572721_2573201_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZX43901.1|2573386_2573866_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZX43902.1|2573873_2574110_-	hypothetical protein	NA	NA	NA	NA	NA
AZX43903.1|2574129_2574531_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZX43904.1|2574533_2574785_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZX43905.1|2574839_2575721_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZX43906.1|2575945_2576392_+	GFA family protein	NA	NA	NA	NA	NA
AZX43907.1|2576476_2577541_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZX43908.1|2577677_2578259_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZX43909.1|2578493_2579624_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZX43910.1|2579801_2581028_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZX43911.1|2581086_2581602_+	transporter	NA	NA	NA	NA	NA
AZX43912.1|2581624_2581951_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZX43913.1|2581984_2583175_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZX43914.1|2583248_2583653_+	GFA family protein	NA	NA	NA	NA	NA
AZX43915.1|2583869_2584820_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43916.1|2584918_2585689_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZX43917.1|2585685_2586357_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZX43918.1|2586353_2586995_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZX43919.1|2587007_2587928_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZX43920.1|2588088_2589249_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX43921.1|2589290_2590241_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZX43922.1|2590839_2591064_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43923.1|2591228_2592923_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZX43924.1|2593044_2593314_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZX43925.1|2593429_2593828_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZX43926.1|2593838_2594795_-	glutathione synthetase	NA	NA	NA	NA	NA
AZX43927.1|2594931_2595477_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZX43928.1|2595497_2597447_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZX43929.1|2597834_2598611_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZX43930.1|2598616_2599009_+	hypothetical protein	NA	NA	NA	NA	NA
AZX43931.1|2599430_2600381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX43932.1|2600377_2601475_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZX43933.1|2601506_2602457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2732282	2772951	4103241	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
AZX44043.1|2732282_2733233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44044.1|2733343_2733526_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44045.1|2733625_2734222_-	lipoprotein	NA	NA	NA	NA	NA
AZX44046.1|2734405_2735497_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44047.1|2735996_2736407_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44048.1|2736465_2736807_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZX44049.1|2736812_2739230_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZX44050.1|2739242_2740265_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZX44051.1|2740339_2740699_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZX44052.1|2740714_2740912_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZX44053.1|2741247_2742198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44054.1|2742184_2742373_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44055.1|2742392_2742842_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZX44056.1|2742838_2743789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44057.1|2743899_2745348_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX44058.1|2745462_2745744_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44059.1|2745847_2746798_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44060.1|2747042_2747756_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX44061.1|2747878_2748106_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX44062.1|2748400_2749039_-	DedA family protein	NA	NA	NA	NA	NA
AZX44063.1|2749111_2750182_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZX44064.1|2750178_2751129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44065.1|2751544_2752069_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZX44066.1|2752072_2752342_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44067.1|2752540_2753602_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZX44068.1|2753685_2755320_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZX44069.1|2755321_2756125_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44070.1|2756153_2757113_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44071.1|2757116_2758631_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44072.1|2758667_2759672_-	peptidase M20	NA	NA	NA	NA	NA
AZX44073.1|2760103_2760574_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZX44074.1|2760609_2761221_-	LysE family translocator	NA	NA	NA	NA	NA
AZX44075.1|2761251_2761875_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX44076.1|2761955_2763488_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZX44077.1|2763522_2764764_-	MFS transporter	NA	NA	NA	NA	NA
AZX44078.1|2764807_2765839_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZX44079.1|2765835_2767005_-	amine oxidase	NA	NA	NA	NA	NA
AZX44080.1|2766998_2767679_-	anti-sigma factor	NA	NA	NA	NA	NA
AZX44081.1|2767840_2768683_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44082.1|2768845_2769817_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX44083.1|2769988_2770867_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZX44084.1|2770889_2771960_-	FUSC family protein	NA	NA	NA	NA	NA
AZX44085.1|2772000_2772951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2828416	2901286	4103241	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZX44129.1|2828416_2828833_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZX44130.1|2828943_2829576_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZX44131.1|2829604_2830048_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZX44132.1|2830069_2831161_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44133.1|2831215_2832016_-	aldolase	NA	NA	NA	NA	NA
AZX44134.1|2832151_2832772_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZX44135.1|2832911_2833385_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44136.1|2834524_2835475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44137.1|2835471_2843133_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZX44138.1|2843373_2847420_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZX44139.1|2847732_2848314_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZX44140.1|2848310_2849609_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZX44141.1|2849688_2850717_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZX44142.1|2850640_2850991_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44143.1|2850977_2851928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44144.1|2851924_2852875_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44145.1|2853191_2853797_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZX44146.1|2853850_2855164_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZX44147.1|2855238_2855709_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZX44148.1|2855708_2856497_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZX44149.1|2856507_2858160_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZX44150.1|2858247_2859198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45313.1|2860359_2860866_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZX44151.1|2860862_2861627_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZX44152.1|2861642_2861927_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZX44153.1|2861991_2862981_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZX44154.1|2863152_2864082_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZX44155.1|2864053_2864740_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZX44156.1|2864773_2865319_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZX44157.1|2865363_2866629_+	peptidase M48	NA	NA	NA	NA	NA
AZX44158.1|2866625_2867528_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZX44159.1|2868709_2869654_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44160.1|2869748_2871266_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44161.1|2871307_2872936_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZX44162.1|2873043_2873925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44163.1|2877037_2877412_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZX44164.1|2877436_2877775_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZX44165.1|2877818_2879453_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZX44166.1|2879491_2880838_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZX45314.1|2880945_2882367_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZX44167.1|2882436_2883021_-	nitroreductase	NA	NA	NA	NA	NA
AZX44168.1|2883123_2884074_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44169.1|2884208_2885315_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44170.1|2885325_2886423_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZX44171.1|2886567_2887773_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZX44172.1|2887779_2888301_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZX44173.1|2888297_2888789_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZX44174.1|2888785_2889037_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZX44175.1|2889017_2889503_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZX44176.1|2889638_2893100_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44177.1|2893096_2894002_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZX44178.1|2894011_2894443_-	lipoprotein	NA	NA	NA	NA	NA
AZX45315.1|2894689_2895193_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZX44179.1|2895204_2896671_+	MFS transporter	NA	NA	NA	NA	NA
AZX44180.1|2896745_2897621_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45316.1|2897617_2898625_-	biotin synthase	NA	NA	NA	NA	NA
AZX44181.1|2899092_2899398_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX44182.1|2899488_2900079_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44183.1|2900269_2901286_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	2904429	2971239	4103241	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZX44186.1|2904429_2905380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44187.1|2905478_2906429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44188.1|2906425_2907220_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZX44189.1|2907251_2907956_-	oxidoreductase	NA	NA	NA	NA	NA
AZX44190.1|2908030_2908831_-	SURF1 family protein	NA	NA	NA	NA	NA
AZX44191.1|2908827_2909235_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZX44192.1|2909231_2909873_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZX44193.1|2909865_2911887_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZX44194.1|2913126_2914458_+	MFS transporter	NA	NA	NA	NA	NA
AZX44195.1|2914454_2915405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44196.1|2917111_2917417_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44197.1|2918085_2918424_+	transcriptional regulator	NA	NA	NA	NA	NA
AZX44198.1|2922976_2923579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44199.1|2923675_2924965_+	MFS transporter	NA	NA	NA	NA	NA
AZX44200.1|2925022_2925754_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZX44201.1|2925750_2926554_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZX44202.1|2926550_2927639_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZX44203.1|2927635_2928565_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX44204.1|2928713_2929859_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44205.1|2929880_2930831_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44206.1|2931161_2934983_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZX44207.1|2935139_2935808_-	lipoprotein	NA	NA	NA	NA	NA
AZX44208.1|2935812_2937486_-	MCE family protein	NA	NA	NA	NA	NA
AZX44209.1|2937504_2938824_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZX44210.1|2938828_2941180_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZX45317.1|2941199_2943368_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZX44211.1|2943364_2948554_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZX44212.1|2948643_2948958_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZX44213.1|2949185_2949431_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZX44214.1|2949525_2950044_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZX44215.1|2950143_2951349_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZX44216.1|2951464_2952862_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZX44217.1|2952978_2953557_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZX44218.1|2953629_2955021_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZX44219.1|2955188_2956139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44220.1|2956419_2957040_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZX44221.1|2957036_2957450_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZX44222.1|2957446_2958490_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZX44223.1|2958545_2958734_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44224.1|2958743_2959508_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZX44225.1|2959598_2960255_+	adenylate kinase	NA	NA	NA	NA	NA
AZX44226.1|2960346_2961105_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44227.1|2961130_2962732_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZX44228.1|2962932_2963937_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZX44229.1|2964037_2964301_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZX44230.1|2964418_2965195_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZX44231.1|2965785_2966736_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44232.1|2969119_2970232_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZX44233.1|2970288_2971239_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3001625	3041863	4103241	transposase	Planktothrix_phage(50.0%)	39	NA	NA
AZX44262.1|3001625_3002576_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44263.1|3002562_3002808_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44264.1|3002696_3003593_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZX44265.1|3005870_3008096_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZX44266.1|3008260_3009349_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZX44267.1|3009305_3009959_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX44268.1|3010006_3010804_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44269.1|3011335_3012286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44270.1|3012366_3013515_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZX44271.1|3013571_3014522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44272.1|3014508_3014727_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44273.1|3014620_3014926_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZX44274.1|3014954_3015389_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX44275.1|3015390_3016635_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX44276.1|3016631_3017342_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45319.1|3017356_3018268_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44277.1|3018637_3019588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44278.1|3019679_3020084_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44279.1|3020080_3020539_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44280.1|3020545_3021454_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45320.1|3021450_3022317_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZX44281.1|3022303_3023131_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZX44282.1|3023141_3024269_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZX44283.1|3025346_3026585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44284.1|3026626_3027889_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44285.1|3027895_3028648_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX44286.1|3028699_3028885_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44287.1|3029160_3029625_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZX44288.1|3029656_3030316_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZX44289.1|3030460_3032569_+	AsmA family protein	NA	NA	NA	NA	NA
AZX44290.1|3032565_3033516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44291.1|3033619_3034240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45321.1|3034343_3035084_+	oxidoreductase	NA	NA	NA	NA	NA
AZX44292.1|3036218_3037343_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44293.1|3037388_3037757_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44294.1|3037998_3038949_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44295.1|3039984_3040527_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44296.1|3040731_3040926_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44297.1|3040912_3041863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3279876	3314714	4103241	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZX44485.1|3279876_3280827_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44486.1|3281271_3281583_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZX44487.1|3281582_3282113_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44488.1|3282275_3283226_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44489.1|3283515_3283980_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZX44490.1|3283994_3285500_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZX44491.1|3285753_3287361_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX44492.1|3287416_3288322_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX44493.1|3288762_3289713_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44494.1|3289811_3290762_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44495.1|3290843_3291425_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZX45338.1|3291849_3292155_+	RND transporter	NA	NA	NA	NA	NA
AZX44496.1|3292168_3293503_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZX44497.1|3293524_3294064_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZX44498.1|3294211_3294676_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZX44499.1|3294818_3295934_-	GTP-binding protein	NA	NA	NA	NA	NA
AZX44500.1|3296210_3296714_-	transcriptional repressor	NA	NA	NA	NA	NA
AZX44501.1|3296851_3297052_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44502.1|3297042_3297765_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZX44503.1|3297761_3298658_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZX44504.1|3298654_3299590_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45339.1|3299595_3300219_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZX44505.1|3300209_3301178_+	nickel transporter	NA	NA	NA	NA	NA
AZX44506.1|3301226_3303368_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZX44507.1|3303380_3304361_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZX44508.1|3304375_3305068_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZX44509.1|3305094_3306006_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZX44510.1|3306048_3306939_-	acyltransferase	NA	NA	NA	NA	NA
AZX44511.1|3306935_3307790_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZX44512.1|3307938_3309237_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZX44513.1|3309347_3309599_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZX44514.1|3309678_3310719_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZX44515.1|3310998_3312417_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZX44516.1|3312487_3312823_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZX44517.1|3312822_3313665_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZX44518.1|3313763_3314714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3326543	3377422	4103241	integrase,tRNA,protease,transposase	Planktothrix_phage(33.33%)	40	3360218:3360236	3380106:3380124
AZX44527.1|3326543_3327494_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45341.1|3327806_3329285_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZX44528.1|3329291_3330401_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZX44529.1|3330412_3331093_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZX44530.1|3331114_3331870_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45342.1|3332005_3332890_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX44531.1|3332977_3333559_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44532.1|3333651_3333774_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44533.1|3333819_3334119_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZX45343.1|3334270_3334696_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44534.1|3336902_3337406_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX44535.1|3337421_3338372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44536.1|3338358_3338556_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44537.1|3338899_3339673_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44538.1|3339805_3340816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44539.1|3340967_3342623_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZX44540.1|3342677_3343019_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZX44541.1|3343032_3344472_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX44542.1|3344604_3345420_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44543.1|3345438_3345627_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44544.1|3345613_3346564_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44545.1|3347951_3348899_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44546.1|3349125_3349866_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44547.1|3349951_3350902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44548.1|3352343_3353915_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZX44549.1|3354247_3356101_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44550.1|3356145_3358710_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZX44551.1|3359128_3360079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3360218:3360236	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZX44552.1|3362944_3363439_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZX44553.1|3363455_3364406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44554.1|3364392_3364593_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44555.1|3364589_3365801_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZX44556.1|3365816_3368768_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZX44557.1|3368769_3371889_-	restriction endonuclease	NA	NA	NA	NA	NA
AZX45344.1|3371885_3372026_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZX44558.1|3372036_3373083_-	Fic family protein	NA	NA	NA	NA	NA
AZX44559.1|3373424_3374552_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZX44560.1|3374831_3375923_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZX44561.1|3375995_3376778_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZX44562.1|3376774_3377422_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3380106:3380124	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 25
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3426309	3480050	4103241	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZX44599.1|3426309_3427260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44600.1|3427664_3428309_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZX44601.1|3428333_3428918_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZX44602.1|3429018_3429636_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZX44603.1|3429638_3431354_-	urease subunit alpha	NA	NA	NA	NA	NA
AZX44604.1|3431350_3431659_-	urease subunit beta	NA	NA	NA	NA	NA
AZX44605.1|3431675_3432311_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZX44606.1|3432337_3432640_-	urease subunit gamma	NA	NA	NA	NA	NA
AZX44607.1|3432740_3433595_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZX44608.1|3434176_3434449_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZX44609.1|3434866_3435274_-	GFA family protein	NA	NA	NA	NA	NA
AZX44610.1|3435643_3436438_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44611.1|3436538_3437774_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZX44612.1|3437842_3438859_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44613.1|3438855_3440247_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZX44614.1|3440243_3441440_+	MFS transporter	NA	NA	NA	NA	NA
AZX44615.1|3441436_3442975_-	SpoVR family protein	NA	NA	NA	NA	NA
AZX44616.1|3442971_3444231_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44617.1|3446171_3447122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44618.1|3447888_3448983_-	CoA transferase	NA	NA	NA	NA	NA
AZX44619.1|3448975_3450310_-	CoA ligase	NA	NA	NA	NA	NA
AZX44620.1|3450263_3450947_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44621.1|3450972_3452136_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44622.1|3452132_3453134_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX44623.1|3453133_3454006_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX44624.1|3454002_3454752_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZX44625.1|3454748_3455540_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZX44626.1|3455536_3456676_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44627.1|3456984_3457737_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44628.1|3457770_3458553_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44629.1|3458556_3458946_+	DNA-binding protein	NA	NA	NA	NA	NA
AZX44630.1|3460085_3460949_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44631.1|3460984_3462073_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44632.1|3462069_3463020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44633.1|3463006_3463375_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44634.1|3463373_3466352_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44635.1|3467278_3468157_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZX44636.1|3470105_3471056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44637.1|3471052_3471520_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZX44638.1|3471562_3472333_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX44639.1|3472353_3473154_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZX44640.1|3473164_3474574_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZX44641.1|3474668_3475454_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZX44642.1|3475693_3476710_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX44643.1|3476817_3477210_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZX44644.1|3477347_3478028_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZX44645.1|3478032_3479031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44646.1|3479099_3480050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3486205	3545505	4103241	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZX44650.1|3486205_3487969_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZX44651.1|3488080_3488959_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZX44652.1|3489071_3489887_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZX44653.1|3489890_3490142_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZX44654.1|3490226_3491243_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZX44655.1|3491573_3491795_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44656.1|3494155_3495073_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX44657.1|3495570_3496779_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44658.1|3496858_3498430_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44659.1|3498547_3499483_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZX44660.1|3499671_3500616_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZX44661.1|3500684_3500900_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44662.1|3501183_3506901_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZX44663.1|3506906_3508034_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZX44664.1|3508089_3508716_+	aminotransferase	NA	NA	NA	NA	NA
AZX44665.1|3508987_3510004_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZX44666.1|3510099_3510810_-	oxidoreductase	NA	NA	NA	NA	NA
AZX45347.1|3510806_3511796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44667.1|3511927_3513523_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZX44668.1|3513525_3514263_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44669.1|3514418_3515291_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZX44670.1|3515559_3516780_+	MFS transporter	NA	NA	NA	NA	NA
AZX44671.1|3516776_3517436_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZX44672.1|3517507_3518140_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZX44673.1|3518169_3518688_+	flavin reductase	NA	NA	NA	NA	NA
AZX44674.1|3518698_3519808_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX44675.1|3519854_3520709_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZX44676.1|3520710_3521613_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44677.1|3522835_3523786_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44678.1|3525542_3526532_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44679.1|3526707_3527496_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZX44680.1|3527492_3528524_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZX44681.1|3528542_3529106_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZX44682.1|3529161_3530682_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZX44683.1|3530945_3531650_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZX44684.1|3531657_3532395_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZX44685.1|3532500_3532875_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZX44686.1|3532917_3534207_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44687.1|3534203_3535373_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZX44688.1|3535369_3536209_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZX44689.1|3536268_3537204_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZX44690.1|3537216_3538167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44691.1|3538265_3539228_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZX44692.1|3539259_3539619_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZX44693.1|3539743_3540646_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZX44694.1|3540647_3542420_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZX44695.1|3542454_3543231_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44696.1|3544554_3545505_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3560443	3618516	4103241	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZX44708.1|3560443_3561394_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44709.1|3561522_3562656_-	peptidase	NA	NA	NA	NA	NA
AZX44710.1|3562699_3563605_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX44711.1|3563607_3565308_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZX44712.1|3565304_3566225_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44713.1|3566232_3567210_-	ABC transporter permease	NA	NA	NA	NA	NA
AZX44714.1|3567268_3568303_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZX44715.1|3570277_3570514_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44716.1|3570640_3571504_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZX44717.1|3571592_3572414_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44718.1|3572493_3573231_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44719.1|3573227_3574220_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZX44720.1|3574333_3574996_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44721.1|3575040_3576189_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44722.1|3578512_3579463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44723.1|3579803_3580754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44724.1|3580852_3581803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44725.1|3582099_3582597_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44726.1|3582639_3584415_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZX45350.1|3584461_3585289_+	copper resistance protein B	NA	NA	NA	NA	NA
AZX44727.1|3585295_3586030_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX44728.1|3587199_3587994_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44729.1|3588283_3588874_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZX44730.1|3588907_3590236_-	amidase	NA	NA	NA	NA	NA
AZX44731.1|3590310_3591456_-	transporter	NA	NA	NA	NA	NA
AZX44732.1|3591567_3592566_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44733.1|3592528_3592963_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZX44734.1|3594479_3595364_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX44735.1|3595360_3596566_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZX44736.1|3596562_3597423_-	endonuclease	NA	NA	NA	NA	NA
AZX44737.1|3597535_3599326_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZX44738.1|3599366_3600032_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZX44739.1|3600032_3600341_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZX45351.1|3600506_3601793_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44740.1|3603226_3604177_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44741.1|3606128_3607343_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZX44742.1|3607448_3608438_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZX44743.1|3608434_3609043_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZX44744.1|3609055_3609685_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZX44745.1|3609681_3610302_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZX44746.1|3610333_3611125_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZX44747.1|3611967_3612432_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZX44748.1|3612450_3613377_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZX44749.1|3613430_3614717_-	cytochrome c	NA	NA	NA	NA	NA
AZX44750.1|3615647_3616520_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZX44751.1|3616516_3617467_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZX44752.1|3617565_3618516_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3628316	3699657	4103241	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
AZX44762.1|3628316_3629591_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZX44763.1|3630313_3631264_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44764.1|3631362_3632313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44765.1|3632411_3634787_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZX44766.1|3634806_3635643_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX44767.1|3635639_3636437_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZX44768.1|3636433_3638623_-	CoA-binding protein	NA	NA	NA	NA	NA
AZX44769.1|3638674_3639661_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44770.1|3639742_3641545_-	DNA alkylation response protein	NA	NA	NA	NA	NA
AZX44771.1|3641802_3643920_+	crotonase	NA	NA	NA	NA	NA
AZX44772.1|3643916_3645134_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZX44773.1|3645155_3645644_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZX44774.1|3645793_3647626_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
AZX45353.1|3647823_3648804_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
AZX44775.1|3648860_3649880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44776.1|3649943_3650837_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44777.1|3651235_3652015_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX44778.1|3652014_3654156_+	CoA-binding protein	NA	NA	NA	NA	NA
AZX45354.1|3654303_3655248_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44779.1|3655331_3656315_-	oxidoreductase	NA	NA	NA	NA	NA
AZX44780.1|3656679_3657954_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZX44781.1|3657984_3658413_+	RidA family protein	NA	NA	NA	NA	NA
AZX44782.1|3658423_3659098_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
AZX44783.1|3659090_3660263_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AZX44784.1|3660395_3661415_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44785.1|3661595_3662786_+	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA	NA
AZX44786.1|3662799_3663930_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44787.1|3663973_3665695_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AZX45355.1|3665813_3666776_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44788.1|3666882_3667854_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44789.1|3668472_3669141_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZX45356.1|3669137_3669545_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZX44790.1|3669541_3670492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44791.1|3672936_3673671_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZX44792.1|3674080_3674260_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45357.1|3674450_3675764_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZX44793.1|3675779_3677291_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44794.1|3677287_3678493_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZX44795.1|3678688_3679666_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44796.1|3679758_3680253_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZX44797.1|3680382_3681441_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZX44798.1|3681437_3683057_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZX45358.1|3683016_3683325_-	GtrA family protein	NA	NA	NA	NA	NA
AZX44799.1|3683244_3684348_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZX44800.1|3684344_3684800_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44801.1|3684805_3685729_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZX44802.1|3685818_3686478_-	LysE family translocator	NA	NA	NA	NA	NA
AZX44803.1|3686474_3687389_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX44804.1|3687477_3688428_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45359.1|3688506_3689484_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44805.1|3689944_3690544_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44806.1|3690612_3691605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44807.1|3691654_3693244_+	sulfurtransferase	NA	NA	NA	NA	NA
AZX44808.1|3693284_3694181_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44809.1|3694177_3695884_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZX44810.1|3695988_3697230_+	CoA transferase	NA	NA	NA	NA	NA
AZX44811.1|3697226_3697997_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZX44812.1|3698045_3698747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX44813.1|3698673_3699657_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	3769479	3823674	4103241	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZX44880.1|3769479_3770430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44881.1|3770552_3771281_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZX44882.1|3771287_3772556_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZX44883.1|3772552_3773386_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZX44884.1|3773422_3774163_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZX44885.1|3774282_3775458_-	dihydroorotase	NA	NA	NA	NA	NA
AZX44886.1|3775454_3776408_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZX44887.1|3776421_3776823_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZX44888.1|3776815_3777493_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZX45365.1|3777508_3777673_-	rubredoxin	NA	NA	NA	NA	NA
AZX44889.1|3777789_3778638_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZX44890.1|3778634_3779288_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZX44891.1|3779304_3780588_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZX44892.1|3780827_3782453_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZX44893.1|3782546_3782948_-	RidA family protein	NA	NA	NA	NA	NA
AZX44894.1|3782972_3783407_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZX44895.1|3783408_3785058_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZX44896.1|3785098_3786268_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZX44897.1|3786270_3787134_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZX44898.1|3790497_3791202_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZX44899.1|3791195_3791990_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZX44900.1|3791986_3792952_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX44901.1|3792955_3793876_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX44902.1|3793972_3795136_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44903.1|3795358_3796249_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZX44904.1|3796252_3796756_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44905.1|3796798_3797797_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44906.1|3797793_3798744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44907.1|3798859_3799120_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44908.1|3799311_3800262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX44909.1|3800321_3800882_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZX44910.1|3802384_3803266_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZX44911.1|3803379_3804582_+	MFS transporter	NA	NA	NA	NA	NA
AZX44912.1|3804710_3806570_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZX44913.1|3806647_3807457_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX44914.1|3807527_3808529_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZX44915.1|3808560_3809421_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX44916.1|3809620_3810625_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZX44917.1|3810621_3812208_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX44918.1|3812216_3813143_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZX44919.1|3813165_3813792_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZX44920.1|3813890_3814841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45366.1|3814837_3815974_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZX44921.1|3816027_3816804_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZX44922.1|3816828_3817287_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZX45367.1|3817426_3818068_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZX44923.1|3818132_3819515_+	cytochrome b	NA	NA	NA	NA	NA
AZX44924.1|3819534_3820389_+	cytochrome c1	NA	NA	NA	NA	NA
AZX44925.1|3820547_3821159_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZX44926.1|3821168_3821618_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZX44927.1|3822136_3822277_-	hypothetical protein	NA	NA	NA	NA	NA
AZX44928.1|3822284_3822446_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZX44929.1|3822521_3822737_+	hypothetical protein	NA	NA	NA	NA	NA
AZX44930.1|3822723_3823674_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025364	Bordetella pertussis strain H709 chromosome, complete genome	4103241	4002309	4067221	4103241	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZX45105.1|4002309_4002795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45106.1|4003013_4003994_+	protein BugT	NA	NA	NA	NA	NA
AZX45107.1|4004260_4005070_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZX45108.1|4005109_4005790_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZX45109.1|4005783_4006242_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZX45110.1|4006253_4006616_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZX45111.1|4006698_4007382_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZX45112.1|4007437_4007746_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZX45113.1|4007764_4008079_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZX45114.1|4008075_4010550_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZX45115.1|4010557_4011949_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZX45116.1|4011945_4012131_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZX45117.1|4012109_4012811_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZX45118.1|4012807_4013629_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZX45376.1|4013609_4014734_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZX45119.1|4014726_4015746_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZX45120.1|4015951_4016986_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZX45377.1|4017086_4017878_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZX45121.1|4017960_4018335_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZX45122.1|4018312_4019722_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZX45123.1|4019714_4021097_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZX45124.1|4021431_4023036_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZX45125.1|4023071_4024085_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX45126.1|4024095_4025022_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX45127.1|4025412_4026363_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45128.1|4026532_4027759_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZX45129.1|4027958_4028825_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZX45130.1|4028817_4029780_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZX45131.1|4029880_4030831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45132.1|4030929_4031880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45133.1|4031978_4032929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZX45134.1|4032925_4034419_-	RND transporter	NA	NA	NA	NA	NA
AZX45135.1|4034415_4037523_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZX45136.1|4037519_4040588_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZX45137.1|4040584_4041835_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZX45138.1|4042015_4042777_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZX45139.1|4042809_4043460_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZX45140.1|4043462_4044302_-	prepilin peptidase	NA	NA	NA	NA	NA
AZX45141.1|4044542_4045286_+	hypothetical protein	NA	NA	NA	NA	NA
AZX45142.1|4045368_4045716_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZX45143.1|4045813_4046656_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZX45144.1|4046700_4047588_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZX45145.1|4047614_4047803_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZX45146.1|4047900_4049358_+	MFS transporter	NA	NA	NA	NA	NA
AZX45147.1|4049344_4050871_+	glycerol kinase	NA	NA	NA	NA	NA
AZX45148.1|4050889_4051357_-	hypothetical protein	NA	NA	NA	NA	NA
AZX45149.1|4051356_4052379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZX45150.1|4052499_4053240_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZX45151.1|4053294_4054395_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45152.1|4054396_4055587_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZX45153.1|4055706_4056723_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZX45154.1|4057041_4057713_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZX45155.1|4057709_4058618_+	ABC transporter permease	NA	NA	NA	NA	NA
AZX45156.1|4058829_4059477_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZX45157.1|4063328_4064405_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZX45158.1|4064415_4065225_-	transcriptional regulator	NA	NA	NA	NA	NA
AZX45159.1|4065314_4066088_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZX45160.1|4066270_4067221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
