The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	0	122073	4107408	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY13650.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY13651.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY13652.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY13653.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY13654.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY13655.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY13656.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY13657.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY13658.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY13659.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY13660.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY13661.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY13662.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY13663.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY17051.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY13664.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13665.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY13666.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY13667.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13668.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY13669.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13670.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY13671.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY17052.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13672.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY13673.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY13674.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13675.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY13676.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY13677.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY13678.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY13679.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY13680.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY13681.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY13682.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY13683.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY13684.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13685.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13686.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY13687.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13688.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY13689.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY13690.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13691.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY13692.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY13693.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY13694.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY13695.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY13696.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13697.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13698.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY13699.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY13700.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13701.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13702.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY13703.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY13704.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY13705.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY13706.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13707.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13708.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY13709.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY13710.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY13711.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY13712.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17053.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13713.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY13714.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17054.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13715.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY13716.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY13717.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY13718.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY13719.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY13720.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY13721.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY13722.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY13723.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY13724.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY13725.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY13726.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY13727.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13728.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY13729.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY13730.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY13731.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY13732.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13733.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY13734.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY13735.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY13736.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY13737.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY13738.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY13739.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY13740.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY13741.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY13742.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13743.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY13744.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY13745.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY13746.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY17055.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY13747.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13748.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY13749.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY13750.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY13751.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13752.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY13753.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY13754.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	164891	225402	4107408	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY13785.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13786.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13787.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZY13788.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY13789.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY13790.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY13791.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17061.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZY13792.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13793.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZY13794.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZY13795.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY13796.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY13797.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13798.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY13799.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY13800.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY13801.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY13802.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZY13803.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY17062.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY13804.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13805.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY13806.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY13807.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13808.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY13809.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY13810.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY13811.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY13812.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY13813.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13814.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZY13815.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13816.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13817.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY13818.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZY13819.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY13820.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZY13821.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY13822.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY13823.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY17063.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13824.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY13825.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY13826.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY13827.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY13828.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY13829.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY13830.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY13831.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY13832.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	233334	287970	4107408	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY13840.1|233334_234285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13841.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13842.1|235318_236269_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13843.1|236367_237318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13844.1|237416_238214_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY13845.1|239163_239574_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY13846.1|240595_241339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13847.1|241382_242426_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY13848.1|242596_244699_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13849.1|246109_247066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13850.1|247084_247576_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY13851.1|247572_248928_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY13852.1|248928_249627_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY13853.1|249623_250325_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY13854.1|250577_251627_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY13855.1|251732_252674_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY13856.1|252670_254560_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY13857.1|254646_255285_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17064.1|255427_256672_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY13858.1|256743_257280_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY13859.1|257431_258823_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY13860.1|258839_259820_-	AEC family transporter	NA	NA	NA	NA	NA
AZY13861.1|259955_260939_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY13862.1|261003_261903_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13863.1|262009_263764_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY13864.1|263771_264896_-	CoA transferase	NA	NA	NA	NA	NA
AZY13865.1|264909_265890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13866.1|266620_267571_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13867.1|268130_268676_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13868.1|268759_270379_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY13869.1|270394_271549_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY13870.1|271562_271688_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY13871.1|271684_273436_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY13872.1|273432_275112_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY13873.1|275147_275723_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY13874.1|276865_277144_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY17065.1|278187_279138_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13875.1|279414_279576_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY13876.1|279583_279724_+	hypothetical protein	NA	NA	NA	NA	NA
AZY13877.1|280242_280692_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY13878.1|280701_281313_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY13879.1|281471_282326_-	cytochrome c1	NA	NA	NA	NA	NA
AZY13880.1|282345_283728_-	cytochrome b	NA	NA	NA	NA	NA
AZY13881.1|283792_284434_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY13882.1|284573_285032_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY13883.1|285056_285833_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY17066.1|285886_287023_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY13884.1|287019_287970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	391903	449412	4107408	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY13983.1|391903_392854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13984.1|392990_393908_+	reductase	NA	NA	NA	NA	NA
AZY13985.1|393904_394153_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY13986.1|394149_395355_+	CoA transferase	NA	NA	NA	NA	NA
AZY13987.1|395427_396423_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13988.1|396445_397666_-	CoA transferase	NA	NA	NA	NA	NA
AZY13989.1|397662_398307_-	hypothetical protein	NA	NA	NA	NA	NA
AZY13990.1|400037_400847_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17072.1|401064_402105_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY13991.1|402203_403187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY13992.1|403113_403815_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13993.1|403863_404634_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY13994.1|404630_405872_-	CoA transferase	NA	NA	NA	NA	NA
AZY13995.1|405976_407683_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY13996.1|407679_408576_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY13997.1|408616_410206_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY13998.1|410255_411248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY13999.1|411316_411916_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17073.1|412376_413354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14000.1|413432_414383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14001.1|414471_415386_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY14002.1|415382_416042_+	LysE family translocator	NA	NA	NA	NA	NA
AZY14003.1|416131_417055_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY14004.1|417060_417516_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14005.1|417512_418616_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY17074.1|418535_418844_+	GtrA family protein	NA	NA	NA	NA	NA
AZY14006.1|418803_420423_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY14007.1|420419_421478_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY14008.1|421607_422102_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY14009.1|422194_423172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14010.1|423367_424573_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY14011.1|424569_426081_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17075.1|426096_427410_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY14012.1|427600_427780_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14013.1|428189_428924_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY14014.1|431368_432319_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14015.1|432450_432849_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY14016.1|433259_433730_-	universal stress protein	NA	NA	NA	NA	NA
AZY14017.1|433818_434163_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY14018.1|434262_435663_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY14019.1|437451_437970_-	methyltransferase	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY14020.1|438080_438836_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY14021.1|439031_440264_+	CoA transferase	NA	NA	NA	NA	NA
AZY14022.1|440256_441042_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY14023.1|441108_442080_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14024.1|442090_443068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14025.1|443193_444366_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY14026.1|444392_445421_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY14027.1|445486_446680_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY14028.1|448461_449412_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	620797	721261	4107408	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY14178.1|620797_621748_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14179.1|622446_622830_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14180.1|622887_623490_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY17081.1|623507_623909_-	DoxX family protein	NA	NA	NA	NA	NA
AZY14181.1|624042_624936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14182.1|624932_625514_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY14183.1|626308_627043_+	arginyltransferase	NA	NA	NA	NA	NA
AZY14184.1|627083_628133_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY14185.1|628280_628859_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY14186.1|629245_630223_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY14187.1|630316_634711_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY14188.1|634911_635760_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14189.1|635918_636731_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY14190.1|636786_637737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14191.1|637835_638636_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14192.1|638697_639081_+	thioredoxin	NA	NA	NA	NA	NA
AZY14193.1|639092_640526_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY14194.1|640732_641062_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY17082.1|641064_641733_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY14195.1|641996_642917_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY14196.1|642963_643176_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY14197.1|643198_643621_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY14198.1|643637_644738_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY14199.1|644834_646352_-	peptidase	NA	NA	NA	NA	NA
AZY14200.1|646427_647267_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY14201.1|647288_648170_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY14202.1|648251_649346_-	porin	NA	NA	NA	NA	NA
AZY14203.1|649639_650590_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17083.1|650664_651606_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14204.1|651689_652049_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14205.1|652430_653468_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14206.1|653784_655125_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY14207.1|655134_655587_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14208.1|655683_656865_+	monooxygenase	NA	NA	NA	NA	NA
AZY14209.1|656924_657956_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY14210.1|657996_658236_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY14211.1|658305_659895_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY14212.1|659894_660443_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY14213.1|660523_661096_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY14214.1|661114_662026_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY14215.1|662099_663068_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY14216.1|663190_664264_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY14217.1|664268_666089_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY14218.1|666165_667116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14219.1|667204_667540_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY14220.1|667673_668324_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY14221.1|668345_669764_-	amidase	NA	NA	NA	NA	NA
AZY14222.1|669833_670589_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17084.1|670557_671316_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY14223.1|671326_672208_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY14224.1|672224_672932_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY14225.1|672934_673693_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY14226.1|673902_675645_+	sulfite reductase	NA	NA	NA	NA	NA
AZY14227.1|675637_676162_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY14228.1|676201_676996_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY14229.1|677163_678237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14230.1|678335_679286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14231.1|679537_679750_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17085.1|679815_680427_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY14232.1|680906_681227_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14233.1|681219_681918_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14234.1|681932_682154_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14235.1|682171_683122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17086.1|683797_684247_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY14236.1|684233_685511_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY14237.1|685513_686932_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY17087.1|686960_688016_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY14238.1|688021_688264_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY14239.1|688386_688989_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY14240.1|689417_690368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14241.1|690385_691033_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY14242.1|691042_691294_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14243.1|691356_691839_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY14244.1|691840_692041_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14245.1|692040_692436_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY14246.1|692432_692831_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY14247.1|692827_693250_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14248.1|693257_693758_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY14249.1|694012_694531_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY14250.1|694540_694870_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY14251.1|694887_695178_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY14252.1|695203_697816_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY14253.1|697825_698185_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14254.1|698252_698786_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY14255.1|698782_699172_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY14256.1|699164_703121_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY14257.1|703125_703542_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14258.1|703760_704024_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY14259.1|704023_704836_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14260.1|704840_705083_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14261.1|705061_705613_+	lysozyme	NA	NA	NA	NA	NA
AZY14262.1|705594_706128_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY14263.1|706124_706406_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14264.1|706748_706949_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14265.1|706955_707627_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY14266.1|707982_708669_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY14267.1|708649_709222_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY14268.1|709287_711018_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY14269.1|711070_711499_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY14270.1|711501_712182_+	protein TolQ	NA	NA	NA	NA	NA
AZY14271.1|712181_712640_+	protein TolR	NA	NA	NA	NA	NA
AZY14272.1|712676_713651_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY14273.1|713667_714984_+	protein TolB	NA	NA	NA	NA	NA
AZY14274.1|715015_715513_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY14275.1|715599_716289_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY14276.1|716288_717338_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY14277.1|717334_718129_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY14278.1|718297_718648_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14279.1|718623_719181_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14280.1|720105_720324_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14281.1|720310_721261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	748186	821348	4107408	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY14302.1|748186_749137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14303.1|749791_750889_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY14304.1|750922_752188_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY14305.1|752345_753296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14306.1|753539_754130_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY17089.1|754145_756590_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY14307.1|756709_757681_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14308.1|757812_758337_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY14309.1|758296_759247_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14310.1|759468_761664_-	DNA methylase	NA	NA	NA	NA	NA
AZY14311.1|761736_762144_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY14312.1|762266_763217_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14313.1|763332_763776_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY14314.1|763838_764633_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY14315.1|764798_765935_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY14316.1|766005_767139_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY14317.1|767288_767549_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY14318.1|767582_767894_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY14319.1|768318_769467_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY14320.1|769581_770547_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY14321.1|770815_771682_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14322.1|771812_773861_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY14323.1|773878_775876_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY14324.1|775910_777248_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY14325.1|777510_779364_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14326.1|779418_780900_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY14327.1|780915_781503_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY17090.1|781585_781765_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14328.1|781951_787072_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY14329.1|787149_789288_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY14330.1|789284_790607_+	protein CyaD	NA	NA	NA	NA	NA
AZY14331.1|790608_792033_+	protein CyaE	NA	NA	NA	NA	NA
AZY14332.1|792123_793032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14333.1|793096_794011_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY14334.1|794848_795532_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY14335.1|795548_796292_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY14336.1|796321_797182_+	aminotransferase	NA	NA	NA	NA	NA
AZY14337.1|797189_797756_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14338.1|797844_798801_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14339.1|798845_799598_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY14340.1|799594_801340_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY14341.1|801424_802159_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14342.1|802475_803498_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY14343.1|803513_804236_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14344.1|804380_805388_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY14345.1|805428_806961_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY14346.1|806957_808076_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY14347.1|808072_808855_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY14348.1|808866_809730_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY17091.1|809748_810846_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14349.1|810914_811841_-	VOC family protein	NA	NA	NA	NA	NA
AZY14350.1|811875_813570_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY14351.1|813769_814705_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY14352.1|814810_815761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14353.1|815859_816516_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY14354.1|816663_819372_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY14355.1|819381_820401_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY14356.1|820397_821348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	854095	903359	4107408	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY14385.1|854095_855046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17092.1|855018_855618_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14386.1|855619_856054_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY14387.1|856050_856485_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14388.1|856468_857272_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY14389.1|857288_858104_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY14390.1|858100_858916_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY14391.1|859062_859764_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14392.1|859791_861750_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY14393.1|861832_862783_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14394.1|863003_863672_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY14395.1|863795_864902_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY14396.1|864914_868028_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY14397.1|868024_869518_+	RND transporter	NA	NA	NA	NA	NA
AZY14398.1|869532_870204_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY14399.1|870247_870742_-	azurin	NA	NA	NA	NA	NA
AZY14400.1|870882_871530_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY17093.1|871633_873682_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY14401.1|873678_875691_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY14402.1|875716_877051_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY17094.1|877159_878152_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14403.1|878218_880303_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY14404.1|880327_881299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14405.1|881427_882429_-	peptidase M14	NA	NA	NA	NA	NA
AZY14406.1|882462_883704_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY14407.1|883784_884708_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY14408.1|884785_885610_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY14409.1|885806_886823_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY14410.1|887019_888003_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14411.1|889601_890990_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY14412.1|891020_892010_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14413.1|892120_893353_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY14414.1|893634_894435_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14415.1|894457_896689_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY14416.1|897476_897923_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY14417.1|897944_898691_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY14418.1|898834_899812_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY14419.1|900445_901057_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY14420.1|901050_902268_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY14421.1|902408_903359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	912971	977911	4107408	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY14430.1|912971_913922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14431.1|913918_915769_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY14432.1|916149_916809_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY14433.1|916896_917049_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14434.1|917157_917325_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14435.1|917336_918017_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY14436.1|918298_919015_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY14437.1|919029_920331_-	phospholipase	NA	NA	NA	NA	NA
AZY14438.1|922475_925364_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
AZY14439.1|925587_926940_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY14440.1|926968_927490_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY14441.1|927486_928941_+	carboxylase	NA	NA	NA	NA	NA
AZY14442.1|928975_929224_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14443.1|929329_930205_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14444.1|930230_931286_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14445.1|931298_932090_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14446.1|932122_933493_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY14447.1|934669_935620_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14448.1|935672_935894_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14449.1|936053_936266_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14450.1|936385_937504_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY14451.1|937600_937816_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14452.1|938009_938261_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14453.1|938373_939324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14454.1|939320_939704_-	ferredoxin	NA	NA	NA	NA	NA
AZY14455.1|939758_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY17096.1|941722_942550_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY14456.1|942595_943576_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY14457.1|943572_943785_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14458.1|943781_944963_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY14459.1|945126_945861_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY14460.1|945862_948475_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY14461.1|948610_950524_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY14462.1|951139_951550_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY14463.1|951647_952733_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY14464.1|952831_953782_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14465.1|953778_954753_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14466.1|954877_955789_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY14467.1|956065_956458_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY14468.1|956587_957538_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14469.1|957567_957750_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY14470.1|957788_958046_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14471.1|958522_959704_-	MFS transporter	NA	NA	NA	NA	NA
AZY14472.1|959919_960597_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY14473.1|960593_961367_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY14474.1|961444_962026_-	OmpA family protein	NA	NA	NA	NA	NA
AZY14475.1|962396_965078_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY14476.1|965077_966211_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY14477.1|966203_967289_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY14478.1|967375_968275_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY14479.1|968271_969600_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY14480.1|969614_970286_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY14481.1|970458_972189_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY14482.1|972190_972550_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY14483.1|972741_973056_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY14484.1|973098_974319_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY14485.1|974315_975257_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY14486.1|975253_976243_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY14487.1|976277_976862_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY14488.1|976960_977911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	997311	1060462	4107408	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY14503.1|997311_998262_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14504.1|998366_999416_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY14505.1|999553_1000570_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY14506.1|1002078_1002651_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY14507.1|1002710_1003442_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY17098.1|1003493_1004411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14508.1|1005218_1008398_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY14509.1|1008394_1009777_+	multidrug transporter	NA	NA	NA	NA	NA
AZY14510.1|1009846_1010098_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY14511.1|1010243_1010894_-	SCO family protein	NA	NA	NA	NA	NA
AZY14512.1|1011044_1013159_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY14513.1|1013234_1014086_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY14514.1|1014082_1014709_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY14515.1|1014705_1016460_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY14516.1|1016752_1019458_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY14517.1|1019470_1021132_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY14518.1|1021144_1022935_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY14519.1|1023156_1024332_-	flagellin FliC	NA	NA	NA	NA	NA
AZY14520.1|1024374_1025325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14521.1|1025423_1026164_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY14522.1|1026358_1028395_+	transketolase	NA	NA	NA	NA	NA
AZY14523.1|1028412_1029423_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY14524.1|1029540_1030734_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY14525.1|1030763_1031537_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY14526.1|1031533_1032724_-	acetate kinase	NA	NA	NA	NA	NA
AZY14527.1|1032749_1033688_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY17099.1|1033684_1036033_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY14528.1|1036187_1036895_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY14529.1|1036932_1038066_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14530.1|1038342_1038891_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY14531.1|1038909_1039395_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY14532.1|1039572_1040511_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY14533.1|1040513_1040831_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14534.1|1040876_1041821_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14535.1|1043501_1044152_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY14536.1|1044205_1044541_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14537.1|1044537_1045398_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY14538.1|1045414_1045696_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14539.1|1045769_1046033_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY14540.1|1046276_1047227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14541.1|1047525_1048263_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY14542.1|1048698_1049022_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY14543.1|1049056_1049617_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY14544.1|1049737_1050613_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY14545.1|1050625_1051573_+	motility protein MotB	NA	NA	NA	NA	NA
AZY14546.1|1051674_1051968_+	response regulator	NA	NA	NA	NA	NA
AZY14547.1|1051994_1054052_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY14548.1|1054066_1054567_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY14549.1|1054640_1056347_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY14550.1|1057210_1058263_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY14551.1|1058315_1058705_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY14552.1|1058713_1059346_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY14553.1|1059445_1060462_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1066446	1126509	4107408	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AZY14558.1|1066446_1067874_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY14559.1|1068811_1069828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY14560.1|1070160_1071096_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY14561.1|1071145_1073026_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY14562.1|1073092_1073437_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY14563.1|1073581_1074718_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY14564.1|1074714_1075788_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY14565.1|1075945_1077382_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY17101.1|1077472_1078114_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY14566.1|1078449_1079466_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY14567.1|1081342_1081522_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17102.1|1081508_1082459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17103.1|1083661_1085083_-	siroheme synthase	NA	NA	NA	NA	NA
AZY14568.1|1085346_1086063_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14569.1|1086147_1086465_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY14570.1|1086505_1086919_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY14571.1|1086920_1087280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14572.1|1087322_1088867_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY14573.1|1088950_1089781_+	transglycosylase	NA	NA	NA	NA	NA
AZY14574.1|1089815_1090970_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY14575.1|1091012_1091885_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14576.1|1092001_1094290_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY14577.1|1095496_1095961_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY14578.1|1095987_1096938_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17104.1|1097305_1098082_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY14579.1|1098126_1098984_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY14580.1|1099005_1100022_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY14581.1|1100156_1101197_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY14582.1|1101391_1103473_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY14583.1|1103708_1105202_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY14584.1|1105432_1106227_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY14585.1|1106447_1107806_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY14586.1|1107802_1108645_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY14587.1|1108663_1110550_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY14588.1|1110787_1111420_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY14589.1|1111438_1112041_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14590.1|1112192_1113143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14591.1|1113945_1114746_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14592.1|1114789_1115776_-	homoserine kinase	NA	NA	NA	NA	NA
AZY14593.1|1115915_1116929_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY14594.1|1116925_1117876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14595.1|1117988_1118447_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY14596.1|1118483_1119797_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14597.1|1119814_1120186_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY14598.1|1120182_1121646_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY14599.1|1121738_1122515_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY14600.1|1122496_1125376_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY14601.1|1125558_1126509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1157575	1219746	4107408	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
AZY14623.1|1157575_1158526_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY14624.1|1158624_1159257_-	fimbrial protein	NA	NA	NA	NA	NA
AZY14625.1|1159421_1161704_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY14626.1|1161858_1164555_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY14627.1|1164680_1165169_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY14628.1|1167579_1170450_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY14629.1|1170495_1171710_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY14630.1|1171939_1173367_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY14631.1|1173407_1174556_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZY14632.1|1174568_1175327_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY14633.1|1175414_1176317_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14634.1|1176313_1177264_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14635.1|1177393_1178377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14636.1|1178431_1179154_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY14637.1|1180632_1181988_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZY14638.1|1182068_1184444_-	protein tex	NA	NA	NA	NA	NA
AZY14639.1|1184608_1186684_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZY14640.1|1186745_1187546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZY14641.1|1187647_1188610_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZY14642.1|1188597_1189353_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZY14643.1|1189460_1191098_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZY14644.1|1191165_1191903_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY14645.1|1192005_1192581_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZY14646.1|1192753_1193290_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14647.1|1193292_1193637_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZY14648.1|1193652_1194498_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZY14649.1|1194536_1195916_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZY14650.1|1195993_1196875_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY14651.1|1196973_1197924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14652.1|1197920_1198331_-	VOC family protein	NA	NA	NA	NA	NA
AZY14653.1|1198438_1199293_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZY14654.1|1199285_1200248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14655.1|1200293_1201418_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZY17106.1|1201529_1202402_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14656.1|1202526_1203306_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY14657.1|1203459_1204881_+	MFS transporter	NA	NA	NA	NA	NA
AZY14658.1|1205315_1207013_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZY14659.1|1207041_1207164_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17107.1|1207239_1208181_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZY14660.1|1208507_1209254_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14661.1|1209261_1210188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14662.1|1210309_1211227_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY14663.1|1211266_1212220_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY14664.1|1212244_1212823_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZY14665.1|1214496_1215105_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14666.1|1215182_1215536_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14667.1|1215619_1216609_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY14668.1|1216811_1217762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14669.1|1217848_1218799_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14670.1|1218795_1219746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1270674	1327885	4107408	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY14708.1|1270674_1271625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14709.1|1275371_1275983_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY14710.1|1276205_1277666_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY14711.1|1277762_1279355_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY14712.1|1279341_1279620_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14713.1|1279678_1279966_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY14714.1|1279967_1281308_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY14715.1|1281403_1282093_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14716.1|1282105_1283536_+	MFS transporter	NA	NA	NA	NA	NA
AZY14717.1|1285260_1286082_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14718.1|1286092_1287664_+	amidohydrolase	NA	NA	NA	NA	NA
AZY14719.1|1287692_1288670_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY14720.1|1288696_1289500_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY14721.1|1289496_1290291_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY14722.1|1290298_1291534_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY14723.1|1291526_1291961_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY14724.1|1292710_1293661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14725.1|1294282_1296010_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY14726.1|1296121_1297480_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY14727.1|1297600_1297786_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14728.1|1297772_1298723_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14729.1|1298763_1299834_+	FUSC family protein	NA	NA	NA	NA	NA
AZY17109.1|1299856_1300735_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY14730.1|1300906_1301878_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY14731.1|1302040_1302883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14732.1|1303044_1303725_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY14733.1|1303718_1304888_+	amine oxidase	NA	NA	NA	NA	NA
AZY14734.1|1304884_1305916_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY14735.1|1305959_1307201_+	MFS transporter	NA	NA	NA	NA	NA
AZY14736.1|1307235_1308768_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY14737.1|1308848_1309472_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY14738.1|1309502_1310114_+	LysE family translocator	NA	NA	NA	NA	NA
AZY14739.1|1310149_1310620_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY14740.1|1311051_1312056_+	peptidase M20	NA	NA	NA	NA	NA
AZY14741.1|1312092_1313607_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY14742.1|1313610_1314570_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY14743.1|1314598_1315402_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY14744.1|1315403_1317038_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY14745.1|1317121_1318183_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY14746.1|1318381_1318651_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14747.1|1318654_1319179_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY14748.1|1319594_1320545_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14749.1|1320541_1321612_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY14750.1|1321684_1322323_+	DedA family protein	NA	NA	NA	NA	NA
AZY14751.1|1322617_1322845_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY14752.1|1322967_1323681_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY14753.1|1323925_1324876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14754.1|1324979_1325261_+	hypothetical protein	NA	NA	NA	NA	NA
AZY14755.1|1325375_1326824_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY14756.1|1326934_1327885_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1573156	1644310	4107408	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY14978.1|1573156_1574107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14979.1|1574128_1575349_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY14980.1|1575534_1576947_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY14981.1|1577010_1578078_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY14982.1|1578074_1579565_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY17120.1|1579574_1580519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14983.1|1580678_1581377_+	pirin family protein	NA	NA	NA	NA	NA
AZY14984.1|1581454_1582360_+	pirin family protein	NA	NA	NA	NA	NA
AZY14985.1|1582379_1583330_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY14986.1|1583428_1584223_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY14987.1|1584227_1585898_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY14988.1|1586021_1587071_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY14989.1|1587392_1588169_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY14990.1|1588233_1589136_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14991.1|1590429_1591233_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY14992.1|1593926_1594313_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY14993.1|1594328_1596419_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY14994.1|1596470_1597424_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY17121.1|1597438_1598326_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY14995.1|1598463_1599990_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY17122.1|1600088_1600589_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY14996.1|1600912_1602868_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY14997.1|1603035_1605120_-	hypothetical protein	NA	NA	NA	NA	NA
AZY14998.1|1605146_1605932_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY14999.1|1606787_1607558_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY15000.1|1607557_1608298_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY15001.1|1608339_1609509_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY15002.1|1609540_1611625_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY15003.1|1611621_1612512_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY15004.1|1612508_1613606_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY15005.1|1613628_1614918_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY15006.1|1614929_1615955_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY15007.1|1615951_1618009_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY15008.1|1618022_1619198_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY15009.1|1619279_1620230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15010.1|1620288_1621062_+	oxidoreductase	NA	NA	NA	NA	NA
AZY15011.1|1621054_1622611_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY15012.1|1622607_1623558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15013.1|1624884_1625487_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15014.1|1625726_1626428_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY15015.1|1626421_1627204_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY15016.1|1627388_1628339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15017.1|1628437_1629175_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY15018.1|1629364_1630123_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY15019.1|1630169_1631159_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15020.1|1631336_1632305_-	transporter	NA	NA	NA	NA	NA
AZY15021.1|1633844_1634813_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY15022.1|1634821_1635763_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY15023.1|1636236_1637247_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17123.1|1637237_1638752_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY15024.1|1638748_1640095_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17124.1|1640097_1641132_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY15025.1|1641181_1642807_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY15026.1|1643359_1644310_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1665101	1726449	4107408	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY15040.1|1665101_1666052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17130.1|1666345_1667068_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY15041.1|1667506_1668694_-	MFS transporter	NA	NA	NA	NA	NA
AZY15042.1|1668697_1669078_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15043.1|1670797_1671769_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15044.1|1671782_1672496_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY15045.1|1672500_1673418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15046.1|1673524_1673821_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15047.1|1673919_1674870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15048.1|1676028_1678962_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY15049.1|1678961_1679306_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY15050.1|1679302_1680931_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY15051.1|1680927_1681407_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY15052.1|1681403_1681688_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY15053.1|1681684_1682011_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY15054.1|1682166_1683117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15055.1|1683160_1683703_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15056.1|1683800_1684649_+	hydrolase	NA	NA	NA	NA	NA
AZY15057.1|1684641_1685148_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY15058.1|1685144_1686146_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY15059.1|1686158_1686953_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY15060.1|1687001_1688903_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY15061.1|1688899_1689523_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15062.1|1689649_1690774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15063.1|1691091_1692759_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY15064.1|1692914_1693691_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY15065.1|1693775_1694774_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15066.1|1694770_1695544_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY15067.1|1696528_1697479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15068.1|1697502_1697967_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY15069.1|1698113_1699322_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY15070.1|1699332_1699803_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY15071.1|1699921_1701211_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY15072.1|1703951_1704902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15073.1|1705000_1706017_-	folate-binding protein	NA	NA	NA	NA	NA
AZY15074.1|1706183_1707230_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY15075.1|1707226_1707853_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY15076.1|1707849_1708902_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY15077.1|1708951_1709722_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY15078.1|1709772_1710609_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15079.1|1710804_1711545_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15080.1|1711619_1712363_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15081.1|1713024_1713798_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY17131.1|1714935_1716225_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY15082.1|1717835_1719083_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY15083.1|1719092_1720802_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY15084.1|1720798_1721737_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY15085.1|1721733_1723017_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY15086.1|1723020_1723503_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY15087.1|1723503_1724490_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15088.1|1724662_1725382_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15089.1|1725498_1726449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1818493	1873922	4107408	transposase,tRNA	uncultured_Caudovirales_phage(16.67%)	48	NA	NA
AZY15153.1|1818493_1819444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15154.1|1821001_1821730_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY15155.1|1821780_1822983_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY15156.1|1823060_1825097_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY15157.1|1825349_1825841_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY15158.1|1826056_1826569_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY15159.1|1826586_1827798_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY15160.1|1827835_1828246_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY15161.1|1828247_1828571_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY15162.1|1828573_1829086_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY15163.1|1829215_1831078_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY15164.1|1831087_1831429_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY15165.1|1831428_1831623_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY15166.1|1831747_1832641_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY15167.1|1832637_1833588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15168.1|1833712_1834522_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY15169.1|1834722_1835673_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15170.1|1836946_1838164_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY15171.1|1839220_1840123_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15172.1|1840199_1841072_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY15173.1|1841202_1841571_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY15174.1|1841628_1842675_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY15175.1|1842870_1844127_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY15176.1|1844131_1845469_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15177.1|1845618_1846575_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15178.1|1848047_1848398_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15179.1|1848445_1850020_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15180.1|1850072_1851017_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY15181.1|1851034_1851865_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY15182.1|1851857_1853492_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY15183.1|1853488_1854844_+	amidase	NA	NA	NA	NA	NA
AZY15184.1|1855750_1857328_+	lipoprotein	NA	NA	NA	NA	NA
AZY15185.1|1857331_1858606_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17136.1|1858703_1859078_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15186.1|1860793_1861927_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZY15187.1|1861964_1862570_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY15188.1|1862566_1863385_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15189.1|1863456_1866081_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY15190.1|1866067_1866322_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY15191.1|1866388_1866970_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15192.1|1867273_1867534_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY15193.1|1867699_1868323_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY15194.1|1868322_1869096_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY15195.1|1869092_1870301_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY15196.1|1870326_1870800_-	RidA family protein	NA	NA	NA	NA	NA
AZY15197.1|1870873_1871824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15198.1|1871922_1872873_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15199.1|1872971_1873922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1876983	1924272	4107408	protease,transposase,tRNA	Klosneuvirus(22.22%)	45	NA	NA
AZY15202.1|1876983_1879866_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY15203.1|1880188_1880614_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY15204.1|1880641_1881790_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY15205.1|1881786_1882293_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY15206.1|1882299_1883595_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY15207.1|1883635_1884940_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY15208.1|1884941_1885580_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15209.1|1885582_1886743_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY15210.1|1886769_1888125_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY15211.1|1888128_1889199_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY15212.1|1889337_1889574_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY15213.1|1889661_1890768_+	GTPase HflX	NA	NA	NA	NA	NA
AZY15214.1|1890733_1892038_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY15215.1|1892056_1892956_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY15216.1|1893139_1894297_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY15217.1|1894361_1895669_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY15218.1|1895782_1896322_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY15219.1|1896599_1896812_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY15220.1|1896831_1898862_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY17137.1|1899661_1901830_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY15221.1|1902239_1902539_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15222.1|1902823_1903237_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY15223.1|1903196_1904147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15224.1|1904245_1905196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15225.1|1905182_1905383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15226.1|1905395_1906481_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY15227.1|1906496_1907258_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY15228.1|1907254_1908178_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY15229.1|1908276_1908801_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY15230.1|1908809_1909553_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY15231.1|1909648_1909888_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15232.1|1909901_1910054_-	lipoprotein	NA	NA	NA	NA	NA
AZY15233.1|1910139_1911630_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY15234.1|1911721_1912660_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY15235.1|1912656_1912833_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY15236.1|1912835_1913498_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY17138.1|1915119_1915263_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY15237.1|1915259_1916234_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15238.1|1916400_1917351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15239.1|1917347_1918622_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY15240.1|1918719_1919919_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY15241.1|1919915_1920569_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY15242.1|1920565_1922002_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY15243.1|1921989_1922349_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY15244.1|1923321_1924272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	1944965	1998205	4107408	transposase	Mycobacterium_phage(33.33%)	50	NA	NA
AZY15263.1|1944965_1945916_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15264.1|1946568_1947519_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15265.1|1947537_1947885_-	GFA family protein	NA	NA	NA	NA	NA
AZY15266.1|1947913_1949353_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY15267.1|1949371_1949767_-	VOC family protein	NA	NA	NA	NA	NA
AZY15268.1|1949941_1950550_+	peptidase S16	NA	NA	NA	NA	NA
AZY15269.1|1950562_1951381_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY15270.1|1951332_1952307_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY15271.1|1952335_1953397_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15272.1|1953393_1955610_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY15273.1|1955623_1956082_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY15274.1|1956239_1956584_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15275.1|1956740_1957646_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17140.1|1957732_1958746_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY15276.1|1960725_1961742_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY15277.1|1961884_1963237_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY15278.1|1963411_1963708_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15279.1|1964845_1965796_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15280.1|1966281_1966458_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15281.1|1966429_1967068_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15282.1|1967142_1968114_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15283.1|1968117_1968972_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZY15284.1|1968990_1969812_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY15285.1|1969843_1970638_+	amidase	NA	NA	NA	NA	NA
AZY15286.1|1970686_1971292_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17141.1|1971288_1972083_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY15287.1|1972368_1973874_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY15288.1|1973915_1974698_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZY15289.1|1974767_1975214_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15290.1|1975210_1976437_-	NnrS family protein	NA	NA	NA	NA	NA
AZY15291.1|1976429_1976834_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZY15292.1|1976993_1977296_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZY15293.1|1977292_1978243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15294.1|1978229_1978421_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15295.1|1978464_1979415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15296.1|1979513_1980479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15297.1|1980616_1981516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15298.1|1984110_1985598_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15299.1|1985608_1986805_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY15300.1|1986877_1988197_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY15301.1|1988193_1989069_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY15302.1|1989099_1990269_-	CoA transferase	NA	NA	NA	NA	NA
AZY15303.1|1990265_1990580_-	ferredoxin	NA	NA	NA	NA	NA
AZY15304.1|1990601_1991324_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY15305.1|1991323_1992142_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY15306.1|1992146_1992674_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY15307.1|1992679_1993945_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY15308.1|1994294_1995434_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15309.1|1995511_1996384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY15310.1|1997254_1998205_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2134810	2198900	4107408	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
AZY15415.1|2134810_2136079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15416.1|2136649_2136862_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15417.1|2136879_2137611_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15418.1|2137645_2138287_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY15419.1|2138279_2138996_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY15420.1|2141160_2141937_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY15421.1|2141958_2143116_-	thiolase	NA	NA	NA	NA	NA
AZY15422.1|2143112_2143544_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15423.1|2143540_2144344_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY15424.1|2144357_2144813_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY15425.1|2144825_2145797_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15426.1|2145862_2147086_-	CoA transferase	NA	NA	NA	NA	NA
AZY15427.1|2147313_2148264_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15428.1|2148387_2150841_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY15429.1|2151029_2152334_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY15430.1|2152438_2153092_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY15431.1|2153094_2154405_-	trigger factor	NA	NA	NA	NA	NA
AZY15432.1|2154583_2155162_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY15433.1|2155273_2155474_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY15434.1|2155819_2156386_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY15435.1|2156469_2156673_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY15436.1|2156979_2157300_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15437.1|2157341_2157623_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15438.1|2157697_2158954_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY15439.1|2159336_2159666_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY15440.1|2161236_2162058_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY15441.1|2162057_2163197_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY15442.1|2163203_2164100_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY15443.1|2164096_2166022_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY15444.1|2166381_2168994_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY15445.1|2169046_2171347_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY15446.1|2171343_2172552_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY15447.1|2172813_2173188_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15448.1|2173184_2174135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15449.1|2174233_2176228_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY15450.1|2176287_2177253_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY15451.1|2177242_2180104_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY15452.1|2180106_2180613_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY15453.1|2180717_2181926_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY15454.1|2181927_2182866_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15455.1|2183027_2183501_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY15456.1|2183497_2184448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15457.1|2184434_2184614_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15458.1|2184558_2184999_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY15459.1|2185127_2186357_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY15460.1|2186395_2187217_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY15461.1|2187270_2188422_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY15462.1|2188513_2189002_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY15463.1|2191528_2194102_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY15464.1|2194172_2196746_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY15465.1|2197011_2197212_+	CsbD family protein	NA	NA	NA	NA	NA
AZY15466.1|2197243_2197405_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY15467.1|2197462_2197801_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY15468.1|2197949_2198900_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2215917	2273672	4107408	transposase,tRNA	Moraxella_phage(40.0%)	58	NA	NA
AZY15484.1|2215917_2216934_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY15485.1|2217031_2218072_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY15486.1|2218206_2219499_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY15487.1|2220858_2221242_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY15488.1|2221259_2221847_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY15489.1|2221884_2222835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15490.1|2222933_2223494_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY15491.1|2223490_2224036_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15492.1|2224231_2225260_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15493.1|2225300_2226641_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY15494.1|2226749_2227754_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15495.1|2227860_2230461_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY15496.1|2230559_2231510_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15497.1|2231608_2232559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15498.1|2232555_2232828_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17151.1|2233086_2235798_-	autotransporter BapA	NA	NA	NA	NA	NA
AZY15499.1|2236365_2237910_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZY15500.1|2237906_2238257_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZY15501.1|2238400_2238829_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZY15502.1|2238912_2240076_+	alanine racemase	NA	NA	NA	NA	NA
AZY15503.1|2240072_2242514_-	MFS transporter	NA	NA	NA	NA	NA
AZY15504.1|2242598_2244620_+	regulator	NA	NA	NA	NA	NA
AZY15505.1|2244616_2245804_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15506.1|2247130_2247331_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17152.1|2247367_2248066_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15507.1|2248240_2248843_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZY15508.1|2248863_2250666_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZY15509.1|2250656_2251055_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15510.1|2251051_2252101_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZY15511.1|2252097_2252898_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY15512.1|2252909_2253185_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY15513.1|2253181_2253853_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY15514.1|2253849_2254929_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY15515.1|2254925_2255474_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15516.1|2255470_2255980_-	type III secretion protein	NA	NA	NA	NA	NA
AZY15517.1|2255979_2257314_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZY15518.1|2257318_2257957_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY15519.1|2257926_2258589_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15520.1|2258581_2259406_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZY15521.1|2259402_2259810_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZY15522.1|2259806_2260328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15523.1|2260332_2260794_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY15524.1|2260817_2262020_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15525.1|2262049_2262991_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15526.1|2263038_2263524_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY15527.1|2263539_2263815_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15528.1|2263836_2264454_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15529.1|2264617_2265715_+	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZY15530.1|2265711_2266089_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZY15531.1|2266093_2266504_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15532.1|2266500_2266869_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17153.1|2266865_2268965_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY15533.1|2268961_2270242_+	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZY15534.1|2270282_2270582_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15535.1|2270571_2270838_+	type III secretion protein	NA	NA	NA	NA	NA
AZY15536.1|2270873_2271329_-	Tir chaperone family protein	NA	NA	NA	NA	NA
AZY15537.1|2271672_2272623_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15538.1|2272721_2273672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2480190	2538434	4107408	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZY15706.1|2480190_2481141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15707.1|2481620_2482277_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY15708.1|2482291_2483959_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY15709.1|2483961_2484591_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15710.1|2484802_2485897_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15711.1|2486041_2486854_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY15712.1|2486857_2488561_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY15713.1|2488611_2489742_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY15714.1|2489928_2491005_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY17160.1|2491086_2491737_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY15715.1|2491751_2493185_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY15716.1|2493438_2494257_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15717.1|2494253_2494958_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY15718.1|2495857_2496973_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15719.1|2497006_2497381_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15720.1|2497403_2498561_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY15721.1|2498573_2498807_-	lipoprotein	NA	NA	NA	NA	NA
AZY15722.1|2499441_2502411_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY15723.1|2502425_2502635_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY15724.1|2502786_2503416_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15725.1|2503412_2505530_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY15726.1|2505526_2506207_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY15727.1|2506203_2506764_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY15728.1|2506770_2507868_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY15729.1|2508005_2508614_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY15730.1|2508610_2509903_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY15731.1|2509916_2510459_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY15732.1|2510468_2511305_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY15733.1|2511338_2512400_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY15734.1|2512441_2513494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY15735.1|2513509_2513812_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15736.1|2513953_2514904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15737.1|2515082_2516777_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY15738.1|2516773_2517859_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY15739.1|2517906_2518806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15740.1|2518816_2519461_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY15741.1|2520482_2523725_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY15742.1|2523735_2524833_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY15743.1|2525095_2526079_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY15744.1|2526177_2527128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15745.1|2527226_2528177_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15746.1|2528186_2528876_-	VIT family protein	NA	NA	NA	NA	NA
AZY15747.1|2528935_2529373_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY15748.1|2529418_2530312_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY15749.1|2530359_2531532_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY15750.1|2531528_2532683_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY15751.1|2532879_2533230_-	RnfH family protein	NA	NA	NA	NA	NA
AZY15752.1|2533219_2533654_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY15753.1|2533670_2534621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15754.1|2534768_2535236_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY15755.1|2535216_2536374_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY15756.1|2536439_2537366_-	paraslipin	NA	NA	NA	NA	NA
AZY15757.1|2537483_2538434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2580712	2647212	4107408	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY15796.1|2580712_2581663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15797.1|2582032_2582605_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY15798.1|2582607_2583618_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY15799.1|2583610_2584111_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY15800.1|2584121_2584463_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY15801.1|2584474_2585266_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY15802.1|2585282_2585552_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY15803.1|2585574_2586363_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY15804.1|2586409_2587426_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY15805.1|2587642_2589085_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY15806.1|2589263_2590883_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY15807.1|2591003_2592824_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY15808.1|2592902_2594435_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY15809.1|2594468_2596115_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY15810.1|2596184_2597207_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY15811.1|2597224_2598358_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AZY15812.1|2598360_2599050_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY15813.1|2599049_2599835_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY15814.1|2599878_2600643_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY15815.1|2600681_2602103_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY15816.1|2602168_2602873_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY15817.1|2602920_2603340_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY15818.1|2603352_2603760_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY17164.1|2603943_2604654_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY15819.1|2604780_2605071_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY15820.1|2605088_2605571_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY15821.1|2610076_2611231_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY15822.1|2611536_2612553_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY15823.1|2612799_2613588_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15824.1|2613654_2614335_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY15825.1|2614331_2615102_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY15826.1|2615200_2616151_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15827.1|2616206_2617124_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY15828.1|2617134_2618313_-	mandelate racemase	NA	NA	NA	NA	NA
AZY15829.1|2618332_2619328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15830.1|2620916_2621525_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY15831.1|2621512_2622553_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY15832.1|2622570_2623533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15833.1|2623529_2624723_-	CoA transferase	NA	NA	NA	NA	NA
AZY15834.1|2624719_2625517_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY15835.1|2625542_2626529_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY15836.1|2626547_2628587_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY17165.1|2628788_2629469_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15837.1|2629482_2630394_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY15838.1|2630390_2630969_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY15839.1|2631107_2632013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15840.1|2632020_2635440_+	nuclease	NA	NA	NA	NA	NA
AZY15841.1|2635427_2638028_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY15842.1|2638983_2639616_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15843.1|2640009_2640768_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15844.1|2640764_2641967_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY15845.1|2642154_2643105_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15846.1|2644012_2645158_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY17166.1|2645177_2645900_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY15847.1|2646016_2646196_+	hypothetical protein	NA	NA	NA	NA	NA
AZY15848.1|2646261_2647212_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2810817	2865334	4107408	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AZY15979.1|2810817_2811768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY15980.1|2811754_2811949_-	hypothetical protein	NA	NA	NA	NA	NA
AZY15981.1|2812096_2812702_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY15982.1|2812755_2814069_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY15983.1|2814143_2814614_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY15984.1|2814613_2815402_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY15985.1|2815412_2817065_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY15986.1|2817152_2818103_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17179.1|2819264_2819771_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY15987.1|2819767_2820532_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY15988.1|2820547_2820832_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY15989.1|2820896_2821886_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY15990.1|2822057_2822987_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY15991.1|2822958_2823645_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY15992.1|2823678_2824224_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY15993.1|2824268_2825534_+	peptidase M48	NA	NA	NA	NA	NA
AZY15994.1|2825530_2826433_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY15995.1|2827614_2828559_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY15996.1|2828653_2830171_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY15997.1|2830212_2831841_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY15998.1|2831948_2832830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY15999.1|2835942_2836317_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY16000.1|2836341_2836680_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY16001.1|2836723_2838358_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY16002.1|2838396_2839743_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY17180.1|2839850_2841272_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY16003.1|2841341_2841926_-	nitroreductase	NA	NA	NA	NA	NA
AZY16004.1|2842028_2842979_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16005.1|2843113_2844220_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16006.1|2844230_2845328_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY16007.1|2845472_2846678_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY16008.1|2846684_2847206_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY16009.1|2847202_2847694_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY16010.1|2847690_2847942_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY16011.1|2847922_2848408_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY16012.1|2848543_2852005_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16013.1|2852001_2852907_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY16014.1|2852916_2853348_-	lipoprotein	NA	NA	NA	NA	NA
AZY17181.1|2853594_2854098_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY16015.1|2854109_2855576_+	MFS transporter	NA	NA	NA	NA	NA
AZY16016.1|2855650_2856526_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17182.1|2856522_2857530_-	biotin synthase	NA	NA	NA	NA	NA
AZY16017.1|2857997_2858303_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY16018.1|2858393_2858984_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16019.1|2859174_2860191_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY16020.1|2860382_2862719_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY16021.1|2862801_2863236_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY16022.1|2863334_2864285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16023.1|2864383_2865334_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2873359	2930144	4107408	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZY16031.1|2873359_2874310_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16032.1|2876016_2876322_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16033.1|2876990_2877329_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY16034.1|2881881_2882484_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16035.1|2882580_2883870_+	MFS transporter	NA	NA	NA	NA	NA
AZY16036.1|2883927_2884659_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY16037.1|2884655_2885459_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY16038.1|2885455_2886544_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY16039.1|2886540_2887470_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY16040.1|2887618_2888764_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16041.1|2888785_2889736_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16042.1|2890066_2893888_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY16043.1|2894044_2894713_-	lipoprotein	NA	NA	NA	NA	NA
AZY16044.1|2894717_2896391_-	MCE family protein	NA	NA	NA	NA	NA
AZY16045.1|2896409_2897729_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY16046.1|2897733_2900085_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY17183.1|2900104_2902273_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY16047.1|2902269_2907459_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY16048.1|2907548_2907863_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY16049.1|2908090_2908336_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY16050.1|2908430_2908949_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY16051.1|2909048_2910254_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY16052.1|2910369_2911767_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY16053.1|2911883_2912462_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY16054.1|2912534_2913926_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY16055.1|2914093_2915044_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16056.1|2915324_2915945_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY16057.1|2915941_2916355_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY16058.1|2916351_2917395_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY16059.1|2917450_2917639_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16060.1|2917648_2918413_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY16061.1|2918503_2919160_+	adenylate kinase	NA	NA	NA	NA	NA
AZY16062.1|2919251_2920010_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY16063.1|2920035_2921637_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY16064.1|2921837_2922842_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY16065.1|2922942_2923206_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY16066.1|2923323_2924100_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY16067.1|2924690_2925641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16068.1|2928024_2929137_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY16069.1|2929193_2930144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	2960530	2999719	4107408	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY16098.1|2960530_2961481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16099.1|2961467_2961713_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16100.1|2961601_2962498_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY16101.1|2964775_2967001_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY16102.1|2967165_2968254_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY16103.1|2968210_2968864_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY16104.1|2968911_2969709_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16105.1|2970240_2971191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16106.1|2971271_2972420_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY16107.1|2972476_2973427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16108.1|2973413_2973632_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16109.1|2973525_2973831_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY16110.1|2973859_2974294_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY16111.1|2974295_2975540_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY16112.1|2975536_2976247_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17185.1|2976261_2977173_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16113.1|2977535_2977940_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16114.1|2977936_2978395_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16115.1|2978401_2979310_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17186.1|2979306_2980173_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY16116.1|2980159_2980987_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY16117.1|2980997_2982125_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY16118.1|2983202_2984441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16119.1|2984482_2985745_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16120.1|2985751_2986504_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY16121.1|2986555_2986741_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16122.1|2987016_2987481_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY16123.1|2987512_2988172_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY16124.1|2988316_2990425_+	AsmA family protein	NA	NA	NA	NA	NA
AZY16125.1|2990421_2991372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16126.1|2991475_2992096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17187.1|2992199_2992940_+	oxidoreductase	NA	NA	NA	NA	NA
AZY16127.1|2994074_2995199_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16128.1|2995244_2995613_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16129.1|2995854_2996805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16130.1|2997840_2998383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16131.1|2998587_2998782_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16132.1|2998768_2999719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3237729	3272567	4107408	transposase,holin	Erwinia_phage(20.0%)	36	NA	NA
AZY16317.1|3237729_3238680_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16318.1|3239124_3239436_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY16319.1|3239435_3239966_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16320.1|3240128_3241079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16321.1|3241368_3241833_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY16322.1|3241847_3243353_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY16323.1|3243606_3245214_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY16324.1|3245269_3246175_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY16325.1|3246615_3247566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16326.1|3247664_3248615_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16327.1|3248696_3249278_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY17206.1|3249702_3250008_+	RND transporter	NA	NA	NA	NA	NA
AZY16328.1|3250021_3251356_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY16329.1|3251377_3251917_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY16330.1|3252064_3252529_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY16331.1|3252671_3253787_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY16332.1|3254063_3254567_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY16333.1|3254704_3254905_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16334.1|3254895_3255618_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY16335.1|3255614_3256511_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY16336.1|3256507_3257443_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17207.1|3257448_3258072_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY16337.1|3258062_3259031_+	nickel transporter	NA	NA	NA	NA	NA
AZY16338.1|3259079_3261221_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY16339.1|3261233_3262214_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY16340.1|3262228_3262921_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY16341.1|3262947_3263859_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY16342.1|3263901_3264792_-	acyltransferase	NA	NA	NA	NA	NA
AZY16343.1|3264788_3265643_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY16344.1|3265791_3267090_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY16345.1|3267200_3267452_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY16346.1|3267531_3268572_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY16347.1|3268851_3270270_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY16348.1|3270340_3270676_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY16349.1|3270675_3271518_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY16350.1|3271616_3272567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3284396	3335274	4107408	protease,integrase,transposase,tRNA	Planktothrix_phage(33.33%)	39	3318070:3318088	3337958:3337976
AZY16359.1|3284396_3285347_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY17209.1|3285659_3287138_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY16360.1|3287144_3288254_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY16361.1|3288265_3288946_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY16362.1|3288967_3289723_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY17210.1|3289858_3290743_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY16363.1|3290830_3291412_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16364.1|3291504_3291627_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16365.1|3291672_3291972_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY17211.1|3292123_3292549_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16366.1|3294755_3295259_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY16367.1|3295274_3296225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16368.1|3296211_3296409_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16369.1|3296752_3297526_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16370.1|3297658_3298669_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16371.1|3298820_3300476_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY16372.1|3300530_3300872_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY16373.1|3300885_3302325_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY16374.1|3302457_3303273_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16375.1|3303291_3303480_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16376.1|3305803_3306751_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16377.1|3306977_3307718_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16378.1|3307803_3308754_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16379.1|3310195_3311767_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY16380.1|3312099_3313953_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16381.1|3313997_3316562_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY16382.1|3316980_3317931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3318070:3318088	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY16383.1|3320796_3321291_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY16384.1|3321307_3322258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16385.1|3322244_3322445_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16386.1|3322441_3323653_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY16387.1|3323668_3326620_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY16388.1|3326621_3329741_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY17212.1|3329737_3329878_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY16389.1|3329888_3330935_-	Fic family protein	NA	NA	NA	NA	NA
AZY16390.1|3331276_3332404_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY16391.1|3332683_3333775_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY16392.1|3333847_3334630_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY16393.1|3334626_3335274_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3337958:3337976	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3384161	3437901	4107408	transposase	Staphylococcus_phage(33.33%)	47	NA	NA
AZY16430.1|3384161_3385112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16431.1|3385516_3386161_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY16432.1|3386185_3386770_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY16433.1|3386870_3387488_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY16434.1|3387490_3389206_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY16435.1|3389202_3389511_-	urease subunit beta	NA	NA	NA	NA	NA
AZY16436.1|3389527_3390163_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY16437.1|3390189_3390492_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY16438.1|3390592_3391447_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY16439.1|3392028_3392301_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY16440.1|3392718_3393126_-	GFA family protein	NA	NA	NA	NA	NA
AZY16441.1|3393495_3394290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16442.1|3394390_3395626_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY16443.1|3395694_3396711_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16444.1|3396707_3398099_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY16445.1|3398095_3399292_+	MFS transporter	NA	NA	NA	NA	NA
AZY16446.1|3399288_3400827_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY16447.1|3400823_3402083_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16448.1|3404023_3404974_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16449.1|3405740_3406835_-	CoA transferase	NA	NA	NA	NA	NA
AZY16450.1|3406827_3408162_-	CoA ligase	NA	NA	NA	NA	NA
AZY16451.1|3408115_3408799_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16452.1|3408824_3409988_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY16453.1|3409984_3410986_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY16454.1|3410985_3411858_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY16455.1|3411854_3412604_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY16456.1|3412600_3413392_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY16457.1|3413388_3414528_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16458.1|3414836_3415589_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY16459.1|3415622_3416405_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY16460.1|3416408_3416798_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY16461.1|3417937_3418801_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY16462.1|3418836_3419925_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16463.1|3419921_3420872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16464.1|3421224_3424203_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16465.1|3425129_3426008_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY16466.1|3427956_3428907_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16467.1|3428903_3429371_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY16468.1|3429413_3430184_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY16469.1|3430204_3431005_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY16470.1|3431015_3432425_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY16471.1|3432519_3433305_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY16472.1|3433544_3434561_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY16473.1|3434668_3435061_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY16474.1|3435198_3435879_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY16475.1|3435883_3436882_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16476.1|3436950_3437901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3444055	3503353	4107408	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY16479.1|3444055_3445819_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY16480.1|3445930_3446809_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY16481.1|3446921_3447737_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY16482.1|3447740_3447992_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY16483.1|3448076_3449093_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY16484.1|3449423_3449645_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16485.1|3452005_3452923_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY16486.1|3453420_3454629_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY16487.1|3454708_3456280_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16488.1|3456397_3457333_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY16489.1|3457521_3458466_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY16490.1|3458534_3458750_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16491.1|3459033_3464751_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY16492.1|3464756_3465884_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY16493.1|3465939_3466566_+	aminotransferase	NA	NA	NA	NA	NA
AZY16494.1|3466837_3467854_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY16495.1|3467949_3468660_-	oxidoreductase	NA	NA	NA	NA	NA
AZY17215.1|3468656_3469646_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16496.1|3469777_3471373_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY16497.1|3471375_3472113_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16498.1|3472268_3473141_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY16499.1|3473409_3474630_+	MFS transporter	NA	NA	NA	NA	NA
AZY16500.1|3474626_3475286_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY16501.1|3475357_3475990_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY16502.1|3476019_3476538_+	flavin reductase	NA	NA	NA	NA	NA
AZY16503.1|3476548_3477658_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY16504.1|3477704_3478559_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY16505.1|3478560_3479463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16506.1|3480685_3481636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16507.1|3483390_3484380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16508.1|3484555_3485344_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY16509.1|3485340_3486372_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY16510.1|3486390_3486954_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY16511.1|3487009_3488530_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY16512.1|3488793_3489498_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY16513.1|3489505_3490243_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY16514.1|3490348_3490723_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY16515.1|3490765_3492055_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16516.1|3492051_3493221_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY16517.1|3493217_3494057_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY16518.1|3494116_3495052_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY16519.1|3495064_3496015_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16520.1|3496113_3497076_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY16521.1|3497107_3497467_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY16522.1|3497591_3498494_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY16523.1|3498495_3500268_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY16524.1|3500302_3501079_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY16525.1|3502402_3503353_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3518291	3576364	4107408	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY16537.1|3518291_3519242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16538.1|3519370_3520504_-	peptidase	NA	NA	NA	NA	NA
AZY16539.1|3520547_3521453_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY16540.1|3521455_3523156_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY16541.1|3523152_3524073_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY16542.1|3524080_3525058_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY16543.1|3525116_3526151_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY16544.1|3528125_3528362_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16545.1|3528488_3529352_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY16546.1|3529440_3530262_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY16547.1|3530341_3531079_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY16548.1|3531075_3532068_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY16549.1|3532181_3532844_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16550.1|3532888_3534037_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY16551.1|3536360_3537311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16552.1|3537651_3538602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16553.1|3538700_3539651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16554.1|3539947_3540445_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16555.1|3540487_3542263_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY17218.1|3542309_3543137_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY16556.1|3543143_3543878_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY16557.1|3545047_3545842_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16558.1|3546131_3546722_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY16559.1|3546755_3548084_-	amidase	NA	NA	NA	NA	NA
AZY16560.1|3548158_3549304_-	transporter	NA	NA	NA	NA	NA
AZY16561.1|3549415_3550414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16562.1|3550376_3550811_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY16563.1|3552327_3553212_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY16564.1|3553208_3554414_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY16565.1|3554410_3555271_-	endonuclease	NA	NA	NA	NA	NA
AZY16566.1|3555383_3557174_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY16567.1|3557214_3557880_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY16568.1|3557880_3558189_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY17219.1|3558354_3559641_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16569.1|3561074_3562025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16570.1|3563976_3565191_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY16571.1|3565296_3566286_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY16572.1|3566282_3566891_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY16573.1|3566903_3567533_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY16574.1|3567529_3568150_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY16575.1|3568181_3568973_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY16576.1|3569815_3570280_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY16577.1|3570298_3571225_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY16578.1|3571278_3572565_-	cytochrome c	NA	NA	NA	NA	NA
AZY16579.1|3573495_3574368_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY16580.1|3574364_3575315_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY16581.1|3575413_3576364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	3707437	3840363	4107408	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	117	3752080:3752097	3796720:3796737
AZY16688.1|3707437_3708388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16689.1|3708384_3709020_-	transporter	NA	NA	NA	NA	NA
AZY16690.1|3709149_3710049_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY16691.1|3710144_3710636_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY16692.1|3710682_3711648_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16693.1|3712781_3714023_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY16694.1|3714136_3715153_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY16695.1|3715187_3715664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16696.1|3715806_3716715_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY16697.1|3716828_3717941_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY16698.1|3718041_3718575_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY16699.1|3718663_3719914_+	kynureninase	NA	NA	NA	NA	NA
AZY16700.1|3720015_3720528_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY16701.1|3720433_3720640_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16702.1|3720626_3721577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16703.1|3721642_3722581_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY16704.1|3722603_3723230_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY16705.1|3723226_3723883_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY16706.1|3723879_3724482_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16707.1|3724488_3725115_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY16708.1|3725256_3725826_+	bacterioferritin	NA	NA	NA	NA	NA
AZY16709.1|3725896_3727216_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY16710.1|3727322_3727514_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY16711.1|3727765_3729055_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY16712.1|3729209_3730205_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16713.1|3730289_3730964_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16714.1|3730960_3731911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16715.1|3732072_3733314_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY16716.1|3733310_3734255_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY16717.1|3734373_3735324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16718.1|3735283_3736213_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16719.1|3736266_3736602_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY16720.1|3736646_3737411_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY16721.1|3737434_3738175_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16722.1|3738182_3739757_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY16723.1|3739770_3740748_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16724.1|3741020_3741620_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY16725.1|3741653_3748556_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY16726.1|3749002_3749134_-	entericidin	NA	NA	NA	NA	NA
AZY16727.1|3749165_3749327_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16728.1|3749399_3749606_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY16729.1|3750610_3751270_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY16730.1|3751297_3752443_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3752080:3752097	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY16731.1|3752583_3752919_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY16732.1|3752993_3753854_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY16733.1|3754117_3754819_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY16734.1|3754988_3755384_+	RidA family protein	NA	NA	NA	NA	NA
AZY16735.1|3755493_3756444_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16736.1|3756454_3757096_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16737.1|3757262_3757505_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16738.1|3757603_3758554_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16739.1|3758589_3759057_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY16740.1|3759290_3759668_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16741.1|3759664_3759847_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16742.1|3759850_3760837_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY16743.1|3760833_3761481_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY16744.1|3761538_3762066_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16745.1|3762099_3763287_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY16746.1|3763276_3763639_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY16747.1|3763631_3763751_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16748.1|3763751_3763952_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY16749.1|3763948_3764938_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY16750.1|3766424_3768395_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY16751.1|3768636_3769035_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16752.1|3769043_3769967_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16753.1|3770424_3771375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16754.1|3771605_3773297_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY16755.1|3773345_3773618_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY16756.1|3773614_3773986_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY16757.1|3774081_3774216_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY16758.1|3774621_3776031_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY16759.1|3776027_3777143_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY16760.1|3777237_3779691_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY16761.1|3779809_3780601_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16762.1|3780720_3782148_+	amidase	NA	NA	NA	NA	NA
AZY17229.1|3782186_3783158_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16763.1|3783576_3784740_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY16764.1|3784827_3785673_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY16765.1|3787229_3788180_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16766.1|3788734_3789109_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY16767.1|3789183_3790242_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY16768.1|3790265_3791216_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16769.1|3794097_3795267_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY17230.1|3795367_3796975_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3796720:3796737	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY16770.1|3797021_3799043_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY16771.1|3799071_3799317_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY16772.1|3799330_3800521_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY16773.1|3800716_3801682_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY16774.1|3801704_3802844_-	alanine racemase	NA	NA	NA	NA	NA
AZY16775.1|3803055_3804018_+	immunogenic protein	NA	NA	NA	NA	NA
AZY16776.1|3804141_3806166_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY16777.1|3806362_3808606_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY16778.1|3808884_3809343_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16779.1|3810270_3812892_-	hypothetical protein	NA	NA	NA	NA	NA
AZY16780.1|3812955_3815583_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY16781.1|3815734_3816799_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16782.1|3816795_3817569_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY16783.1|3817577_3818411_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY16784.1|3818423_3819203_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY17231.1|3819237_3820710_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY16785.1|3820737_3821496_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY16786.1|3821551_3823402_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY16787.1|3823495_3823972_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY16788.1|3823988_3824909_-	bestrophin	NA	NA	NA	NA	NA
AZY16789.1|3825015_3825516_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY16790.1|3825889_3826582_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY16791.1|3826890_3827841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16792.1|3827837_3831611_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY16793.1|3831947_3833837_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY16794.1|3833848_3834742_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY16795.1|3834767_3835643_+	thiazole synthase	NA	NA	NA	NA	NA
AZY16796.1|3835639_3836491_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY16797.1|3836552_3837233_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY16798.1|3837236_3837596_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16799.1|3837596_3838556_+	hypothetical protein	NA	NA	NA	NA	NA
AZY16800.1|3838576_3839065_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY16801.1|3839346_3840363_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025384	Bordetella pertussis strain I945 chromosome, complete genome	4107408	4006476	4071388	4107408	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY16966.1|4006476_4006962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16967.1|4007180_4008161_+	protein BugT	NA	NA	NA	NA	NA
AZY16968.1|4008427_4009237_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY16969.1|4009276_4009957_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY16970.1|4009950_4010409_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY16971.1|4010420_4010783_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY16972.1|4010865_4011549_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY16973.1|4011604_4011913_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY16974.1|4011931_4012246_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY16975.1|4012242_4014717_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY16976.1|4014724_4016116_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY16977.1|4016112_4016298_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY16978.1|4016276_4016978_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY16979.1|4016974_4017796_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY17240.1|4017776_4018901_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY16980.1|4018893_4019913_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY16981.1|4020118_4021153_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY17241.1|4021253_4022045_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY16982.1|4022127_4022502_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY16983.1|4022479_4023889_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY16984.1|4023881_4025264_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY16985.1|4025598_4027203_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY16986.1|4027238_4028252_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY16987.1|4028262_4029189_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY16988.1|4029579_4030530_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16989.1|4030699_4031926_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY16990.1|4032125_4032992_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY16991.1|4032984_4033947_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY16992.1|4034047_4034998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16993.1|4035096_4036047_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16994.1|4036145_4037096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY16995.1|4037092_4038586_-	RND transporter	NA	NA	NA	NA	NA
AZY16996.1|4038582_4041690_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY16997.1|4041686_4044755_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY16998.1|4044751_4046002_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY16999.1|4046182_4046944_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY17000.1|4046976_4047627_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY17001.1|4047629_4048469_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY17002.1|4048709_4049453_+	hypothetical protein	NA	NA	NA	NA	NA
AZY17003.1|4049535_4049883_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY17004.1|4049980_4050823_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY17005.1|4050867_4051755_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY17006.1|4051781_4051970_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY17007.1|4052067_4053525_+	MFS transporter	NA	NA	NA	NA	NA
AZY17008.1|4053511_4055038_+	glycerol kinase	NA	NA	NA	NA	NA
AZY17009.1|4055056_4055524_-	hypothetical protein	NA	NA	NA	NA	NA
AZY17010.1|4055523_4056546_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY17011.1|4056666_4057407_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY17012.1|4057461_4058562_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17013.1|4058563_4059754_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY17014.1|4059873_4060890_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY17015.1|4061208_4061880_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY17016.1|4061876_4062785_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY17017.1|4062996_4063644_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY17018.1|4067495_4068572_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY17019.1|4068582_4069392_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY17020.1|4069481_4070255_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY17021.1|4070437_4071388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
