The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	0	122073	4101882	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY40453.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY40454.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY40455.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY40456.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY40457.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY40458.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY40459.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY40460.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY40461.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY40462.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY40463.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY40464.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY40465.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY40466.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY43838.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY40467.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40468.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY40469.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY40470.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40471.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY40472.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40473.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY40474.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY43839.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40475.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY40476.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY40477.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40478.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY40479.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY40480.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY40481.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY40482.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY40483.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY40484.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY40485.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY40486.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY40487.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40488.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40489.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY40490.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40491.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY40492.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY40493.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40494.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY40495.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY40496.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY40497.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY40498.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY40499.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY40500.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40501.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY40502.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY40503.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40504.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40505.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY40506.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY40507.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY40508.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY40509.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40510.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40511.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY40512.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY40513.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY40514.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY40515.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43840.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40516.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY40517.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43841.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40518.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY40519.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY40520.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY40521.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY40522.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY40523.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY40524.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY40525.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY40526.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY40527.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY40528.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY40529.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY40530.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40531.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY40532.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY40533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY40534.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY40535.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40536.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY40537.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY40538.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY40539.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY40540.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY40541.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY40542.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY40543.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY40544.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY40545.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40546.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY40547.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY40548.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY40549.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY43842.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY40550.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43843.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY40551.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY40552.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY40553.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY40554.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY40555.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY40556.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	164894	225405	4101882	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY40586.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40587.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40588.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZY40589.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY40590.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY40591.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY40592.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43850.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZY40593.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40594.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZY40595.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZY40596.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY40597.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY40598.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40599.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY40600.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY40601.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY40602.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY40603.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZY40604.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY43851.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY40605.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40606.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY40607.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY40608.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40609.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY40610.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY40611.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY40612.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY40613.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY40614.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40615.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZY40616.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40617.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40618.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY40619.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZY40620.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY40621.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZY40622.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY40623.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY40624.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY43852.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40625.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY40626.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY40627.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY40628.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY40629.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY40630.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY40631.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY40632.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY40633.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	265574	397545	4101882	integrase,transposase,tRNA	Klosneuvirus(10.71%)	116	308246:308263	352886:352903
AZY40666.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40667.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40668.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY40669.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY40670.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY40671.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY40672.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY40673.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY40674.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY40675.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40676.1|278400_279093_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY40677.1|279466_279967_-	SET domain-containing protein	NA	NA	NA	NA	NA
AZY40678.1|280073_280994_+	bestrophin	NA	NA	NA	NA	NA
AZY40679.1|281010_281487_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY40680.1|281580_283431_+	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY40681.1|283486_284245_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43854.1|284272_285745_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY40682.1|285779_286559_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY40683.1|286571_287405_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY40684.1|287413_288187_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY40685.1|288183_289248_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY40686.1|289399_292027_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY40687.1|292090_294712_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40688.1|295639_296098_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40689.1|296376_298620_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY40690.1|298816_300841_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY40691.1|300964_301927_-	immunogenic protein	NA	NA	NA	NA	NA
AZY40692.1|302138_303278_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY40693.1|303300_304266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40694.1|304461_305652_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY40695.1|305665_305911_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY40696.1|305939_307961_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY43855.1|308007_309615_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
308246:308263	attL	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZY40697.1|309715_310885_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY40698.1|313766_314717_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40699.1|314740_315799_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY40700.1|315873_316248_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40701.1|316802_317753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40702.1|319309_320155_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY40703.1|320242_321406_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY43856.1|321824_322796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40704.1|322834_324262_-	amidase	NA	NA	NA	NA	NA
AZY40705.1|324381_325173_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40706.1|325291_327745_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY40707.1|327839_328955_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY40708.1|328951_330361_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY40709.1|330766_330901_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY40710.1|330996_331368_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY40711.1|331364_331637_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY40712.1|331685_333377_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY40713.1|333607_334558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40714.1|335015_335939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40715.1|335947_336346_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40716.1|336587_338558_+	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY40717.1|340044_341034_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY40718.1|341030_341231_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY40719.1|341231_341351_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40720.1|341343_341706_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY40721.1|341695_342883_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY40722.1|342916_343444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40723.1|343501_344149_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY40724.1|344145_345132_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY40725.1|345135_345318_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40726.1|345314_345692_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40727.1|345925_346393_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY40728.1|346428_347379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40729.1|347477_347720_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40730.1|347886_348528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40731.1|348538_349489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40732.1|349598_349994_-	RidA family protein	NA	NA	NA	NA	NA
AZY40733.1|350163_350865_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY40734.1|351128_351989_+	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY40735.1|352063_352399_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY40736.1|352539_353685_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
352886:352903	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
AZY40737.1|353712_354372_-	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY40738.1|355376_355583_+	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY40739.1|355655_355817_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40740.1|355848_355980_+	entericidin	NA	NA	NA	NA	NA
AZY40741.1|356426_363329_+	autotransporter BatB	NA	NA	NA	NA	NA
AZY40742.1|363362_363962_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY40743.1|364234_365212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40744.1|365225_366800_+	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY40745.1|366807_367548_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40746.1|367571_368336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY40747.1|368380_368716_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY40748.1|368769_369699_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40749.1|369658_370609_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40750.1|370727_371672_-	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY40751.1|371668_372910_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY40752.1|373071_374022_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40753.1|374018_374693_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY40754.1|374777_375773_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40755.1|375927_377217_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY40756.1|377468_377660_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY40757.1|377766_379086_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY40758.1|379156_379726_-	bacterioferritin	NA	NA	NA	NA	NA
AZY40759.1|379867_380494_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY40760.1|380500_381103_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40761.1|381099_381756_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZY40762.1|381752_382379_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY40763.1|382401_383340_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY40764.1|383405_384356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY40765.1|384342_384549_-	hypothetical protein	NA	NA	NA	NA	NA
AZY40766.1|384454_384967_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY40767.1|385068_386319_-	kynureninase	NA	NA	NA	NA	NA
AZY40768.1|386407_386941_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY40769.1|387041_388154_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY40770.1|388267_389176_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY40771.1|389318_389795_+	hypothetical protein	NA	NA	NA	NA	NA
AZY40772.1|389829_390846_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY40773.1|390959_392201_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY40774.1|393334_394300_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY40775.1|394346_394838_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY40776.1|394933_395833_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY40777.1|395962_396598_+	transporter	NA	NA	NA	NA	NA
AZY40778.1|396594_397545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	668171	768635	4101882	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY41017.1|668171_669122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41018.1|669820_670204_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41019.1|670261_670864_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY43865.1|670881_671283_-	DoxX family protein	NA	NA	NA	NA	NA
AZY41020.1|671416_672310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41021.1|672306_672888_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY41022.1|673682_674417_+	arginyltransferase	NA	NA	NA	NA	NA
AZY41023.1|674457_675507_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY41024.1|675654_676233_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY41025.1|676619_677597_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY41026.1|677690_682085_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY41027.1|682285_683134_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41028.1|683292_684105_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY41029.1|684160_685111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41030.1|685209_686010_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41031.1|686071_686455_+	thioredoxin	NA	NA	NA	NA	NA
AZY41032.1|686466_687900_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY41033.1|688106_688436_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY43866.1|688438_689107_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY41034.1|689370_690291_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY41035.1|690337_690550_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY41036.1|690572_690995_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY41037.1|691011_692112_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY41038.1|692208_693726_-	peptidase	NA	NA	NA	NA	NA
AZY41039.1|693801_694641_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY41040.1|694662_695544_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY41041.1|695625_696720_-	porin	NA	NA	NA	NA	NA
AZY41042.1|697013_697964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43867.1|698038_698980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41043.1|699063_699423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41044.1|699804_700842_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41045.1|701158_702499_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY41046.1|702508_702961_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41047.1|703057_704239_+	monooxygenase	NA	NA	NA	NA	NA
AZY41048.1|704298_705330_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY41049.1|705370_705610_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY41050.1|705679_707269_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY41051.1|707268_707817_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY41052.1|707897_708470_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY41053.1|708488_709400_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY41054.1|709473_710442_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY41055.1|710564_711638_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY41056.1|711642_713463_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY41057.1|713539_714490_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41058.1|714578_714914_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY41059.1|715047_715698_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY41060.1|715719_717138_-	amidase	NA	NA	NA	NA	NA
AZY41061.1|717207_717963_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43868.1|717931_718690_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY41062.1|718700_719582_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY41063.1|719598_720306_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY41064.1|720308_721067_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY41065.1|721276_723019_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY41066.1|723011_723536_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY41067.1|723575_724370_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41068.1|724537_725611_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41069.1|725709_726660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41070.1|726911_727124_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43869.1|727189_727801_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY41071.1|728280_728601_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41072.1|728593_729292_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41073.1|729306_729528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41074.1|729545_730496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43870.1|731171_731621_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY41075.1|731607_732885_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY41076.1|732887_734306_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY43871.1|734334_735390_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY41077.1|735395_735638_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY41078.1|735760_736363_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY41079.1|736791_737742_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41080.1|737759_738407_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY41081.1|738416_738668_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41082.1|738730_739213_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY41083.1|739214_739415_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41084.1|739414_739810_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY41085.1|739806_740205_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY41086.1|740201_740624_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41087.1|740631_741132_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY41088.1|741386_741905_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY41089.1|741914_742244_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY41090.1|742261_742552_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY41091.1|742577_745190_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY41092.1|745199_745559_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41093.1|745626_746160_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY41094.1|746156_746546_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY41095.1|746538_750495_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY41096.1|750499_750916_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41097.1|751134_751398_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY41098.1|751397_752210_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41099.1|752214_752457_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41100.1|752435_752987_+	lysozyme	NA	NA	NA	NA	NA
AZY41101.1|752968_753502_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY41102.1|753498_753780_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41103.1|754122_754323_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41104.1|754329_755001_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY41105.1|755356_756043_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY41106.1|756023_756596_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY41107.1|756661_758392_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY41108.1|758444_758873_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY41109.1|758875_759556_+	protein TolQ	NA	NA	NA	NA	NA
AZY41110.1|759555_760014_+	protein TolR	NA	NA	NA	NA	NA
AZY41111.1|760050_761025_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY41112.1|761041_762358_+	protein TolB	NA	NA	NA	NA	NA
AZY41113.1|762389_762887_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY41114.1|762973_763663_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY41115.1|763662_764712_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY41116.1|764708_765503_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY41117.1|765671_766022_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41118.1|765997_766555_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41119.1|767479_767698_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41120.1|767684_768635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	795560	868722	4101882	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY41141.1|795560_796511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41142.1|797165_798263_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY41143.1|798296_799562_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY41144.1|799719_800670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41145.1|800913_801504_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY43873.1|801519_803964_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY41146.1|804083_805055_-	FecR family protein	NA	NA	NA	NA	NA
AZY41147.1|805186_805711_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY41148.1|805670_806621_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41149.1|806842_809038_-	DNA methylase	NA	NA	NA	NA	NA
AZY41150.1|809110_809518_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY41151.1|809640_810591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41152.1|810706_811150_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY41153.1|811212_812007_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY41154.1|812172_813309_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY41155.1|813379_814513_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY41156.1|814662_814923_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY41157.1|814956_815268_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY41158.1|815692_816841_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY41159.1|816955_817921_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY41160.1|818189_819056_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41161.1|819186_821235_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY41162.1|821252_823250_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY41163.1|823284_824622_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY41164.1|824884_826738_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41165.1|826792_828274_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY41166.1|828289_828877_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY43874.1|828959_829139_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41167.1|829325_834446_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY41168.1|834523_836662_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY41169.1|836658_837981_+	protein CyaD	NA	NA	NA	NA	NA
AZY41170.1|837982_839407_+	protein CyaE	NA	NA	NA	NA	NA
AZY41171.1|839497_840406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41172.1|840470_841385_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41173.1|842222_842906_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY41174.1|842922_843666_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY41175.1|843695_844556_+	aminotransferase	NA	NA	NA	NA	NA
AZY41176.1|844563_845130_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41177.1|845218_846175_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41178.1|846219_846972_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY41179.1|846968_848714_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY41180.1|848798_849533_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41181.1|849849_850872_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY41182.1|850887_851610_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41183.1|851754_852762_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY41184.1|852802_854335_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY41185.1|854331_855450_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY41186.1|855446_856229_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY41187.1|856240_857104_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY43875.1|857122_858220_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41188.1|858288_859215_-	VOC family protein	NA	NA	NA	NA	NA
AZY41189.1|859249_860944_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY41190.1|861143_862079_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY41191.1|862184_863135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41192.1|863233_863890_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY41193.1|864037_866746_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY41194.1|866755_867775_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY41195.1|867771_868722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	901469	950733	4101882	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZY41224.1|901469_902420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43876.1|902392_902992_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41225.1|902993_903428_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY41226.1|903424_903859_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41227.1|903842_904646_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY41228.1|904662_905478_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY41229.1|905474_906290_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY41230.1|906436_907138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41231.1|907165_909124_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY41232.1|909206_910157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41233.1|910377_911046_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY41234.1|911169_912276_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY41235.1|912288_915402_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY41236.1|915398_916892_+	RND transporter	NA	NA	NA	NA	NA
AZY41237.1|916906_917578_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY41238.1|917621_918116_-	azurin	NA	NA	NA	NA	NA
AZY41239.1|918256_918904_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY43877.1|919007_921056_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY41240.1|921052_923065_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY41241.1|923090_924425_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43878.1|924533_925526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41242.1|925592_927677_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY41243.1|927701_928673_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41244.1|928801_929803_-	peptidase M14	NA	NA	NA	NA	NA
AZY41245.1|929836_931078_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY41246.1|931158_932082_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY41247.1|932159_932984_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY43879.1|933180_934197_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY41248.1|934393_935377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41249.1|936975_938364_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY41250.1|938394_939384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41251.1|939494_940727_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY41252.1|941008_941809_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41253.1|941831_944063_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY41254.1|944850_945297_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY41255.1|945318_946065_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY41256.1|946208_947186_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY41257.1|947819_948431_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY41258.1|948424_949642_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY41259.1|949782_950733_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	960345	1025285	4101882	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY41268.1|960345_961296_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41269.1|961292_963143_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY41270.1|963523_964183_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY41271.1|964270_964423_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41272.1|964531_964699_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41273.1|964710_965391_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY41274.1|965672_966389_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY41275.1|966403_967705_-	phospholipase	NA	NA	NA	NA	NA
AZY41276.1|969849_972738_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY41277.1|972961_974314_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY41278.1|974342_974864_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY41279.1|974860_976315_+	carboxylase	NA	NA	NA	NA	NA
AZY41280.1|976349_976598_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41281.1|976703_977579_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41282.1|977604_978660_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41283.1|978672_979464_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41284.1|979496_980867_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY41285.1|982043_982994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41286.1|983046_983268_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41287.1|983427_983640_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41288.1|983759_984878_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY41289.1|984974_985190_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41290.1|985383_985635_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41291.1|985747_986698_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41292.1|986694_987078_-	ferredoxin	NA	NA	NA	NA	NA
AZY41293.1|987132_988950_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY43881.1|989096_989924_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY41294.1|989969_990950_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY41295.1|990946_991159_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41296.1|991155_992337_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY41297.1|992500_993235_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY41298.1|993236_995849_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY41299.1|995984_997898_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY41300.1|998513_998924_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY41301.1|999021_1000107_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY41302.1|1000205_1001156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41303.1|1001152_1002127_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY41304.1|1002251_1003163_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY43882.1|1003439_1003832_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY41305.1|1003961_1004912_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41306.1|1004941_1005124_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY41307.1|1005162_1005420_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41308.1|1005896_1007078_-	MFS transporter	NA	NA	NA	NA	NA
AZY41309.1|1007293_1007971_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY41310.1|1007967_1008741_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY41311.1|1008818_1009400_-	OmpA family protein	NA	NA	NA	NA	NA
AZY41312.1|1009770_1012452_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY41313.1|1012451_1013585_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY41314.1|1013577_1014663_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY41315.1|1014749_1015649_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY41316.1|1015645_1016974_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY41317.1|1016988_1017660_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY41318.1|1017832_1019563_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY41319.1|1019564_1019924_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY41320.1|1020115_1020430_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY41321.1|1020472_1021693_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY41322.1|1021689_1022631_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY41323.1|1022627_1023617_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY41324.1|1023651_1024236_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY41325.1|1024334_1025285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1044685	1107836	4101882	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY41340.1|1044685_1045636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41341.1|1045740_1046790_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY43884.1|1046927_1047944_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY41342.1|1049452_1050025_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY41343.1|1050084_1050816_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY43885.1|1050867_1051785_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41344.1|1052592_1055772_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY41345.1|1055768_1057151_+	multidrug transporter	NA	NA	NA	NA	NA
AZY41346.1|1057220_1057472_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY41347.1|1057617_1058268_-	SCO family protein	NA	NA	NA	NA	NA
AZY41348.1|1058418_1060533_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY41349.1|1060608_1061460_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY41350.1|1061456_1062083_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY41351.1|1062079_1063834_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY41352.1|1064126_1066832_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY41353.1|1066844_1068506_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY41354.1|1068518_1070309_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY41355.1|1070530_1071706_-	flagellin FliC	NA	NA	NA	NA	NA
AZY41356.1|1071748_1072699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41357.1|1072797_1073538_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY41358.1|1073732_1075769_+	transketolase	NA	NA	NA	NA	NA
AZY41359.1|1075786_1076797_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY41360.1|1076914_1078108_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY41361.1|1078137_1078911_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY41362.1|1078907_1080098_-	acetate kinase	NA	NA	NA	NA	NA
AZY41363.1|1080123_1081062_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY43886.1|1081058_1083407_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY41364.1|1083561_1084269_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY41365.1|1084306_1085440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41366.1|1085716_1086265_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY41367.1|1086283_1086769_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY41368.1|1086946_1087885_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY41369.1|1087887_1088205_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41370.1|1088250_1089195_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41371.1|1090875_1091526_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY41372.1|1091579_1091915_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41373.1|1091911_1092772_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY41374.1|1092788_1093070_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41375.1|1093143_1093407_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY41376.1|1093650_1094601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41377.1|1094899_1095637_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY41378.1|1096072_1096396_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY41379.1|1096430_1096991_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY41380.1|1097111_1097987_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY41381.1|1097999_1098947_+	motility protein MotB	NA	NA	NA	NA	NA
AZY41382.1|1099048_1099342_+	response regulator	NA	NA	NA	NA	NA
AZY41383.1|1099368_1101426_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY41384.1|1101440_1101941_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY41385.1|1102014_1103721_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY41386.1|1104584_1105637_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY41387.1|1105689_1106079_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY41388.1|1106087_1106720_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY43887.1|1106819_1107836_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1113820	1183036	4101882	holin,transposase,tRNA	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZY41393.1|1113820_1115248_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY43889.1|1116185_1117202_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY41394.1|1117534_1118470_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY41395.1|1118519_1120400_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY41396.1|1120466_1120811_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY41397.1|1120955_1122092_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY41398.1|1122088_1123162_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY41399.1|1123319_1124756_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY43890.1|1124846_1125488_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY43891.1|1125823_1126840_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY41400.1|1127172_1129920_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY43892.1|1129986_1131408_-	siroheme synthase	NA	NA	NA	NA	NA
AZY41401.1|1131671_1132388_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41402.1|1132472_1132790_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY41403.1|1132830_1133244_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY41404.1|1133245_1133605_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41405.1|1133647_1135192_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY41406.1|1135275_1136106_+	transglycosylase	NA	NA	NA	NA	NA
AZY41407.1|1136140_1137295_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY41408.1|1138331_1140620_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY41409.1|1141826_1142291_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY41410.1|1142317_1143268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43893.1|1143635_1144412_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY41411.1|1144456_1145314_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY41412.1|1145335_1146352_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY41413.1|1146486_1147527_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY41414.1|1147721_1149803_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY41415.1|1150038_1151532_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY41416.1|1151762_1152557_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY41417.1|1152777_1154136_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY41418.1|1154132_1154975_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY41419.1|1154993_1156880_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY41420.1|1157117_1157750_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY41421.1|1157768_1158371_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41422.1|1158522_1159473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41423.1|1160275_1161076_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41424.1|1161119_1162106_-	homoserine kinase	NA	NA	NA	NA	NA
AZY41425.1|1162245_1163259_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY41426.1|1163255_1164206_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41427.1|1164318_1164777_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY41428.1|1164813_1166127_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41429.1|1166144_1166516_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY41430.1|1166512_1167976_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY41431.1|1168068_1168845_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY41432.1|1168826_1171706_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY41433.1|1171888_1172839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41434.1|1173006_1173831_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY41435.1|1173830_1174709_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY41436.1|1175613_1176729_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41437.1|1176736_1177552_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY41438.1|1177548_1179414_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY41439.1|1179492_1180125_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41440.1|1180223_1181174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41441.1|1181170_1181473_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41442.1|1181515_1183036_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 10
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1365012	1433499	4101882	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZY41583.1|1365012_1365963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41584.1|1366731_1367370_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY43904.1|1368259_1368706_+	glutamate racemase	NA	NA	NA	NA	NA
AZY41585.1|1368787_1369489_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY41586.1|1369489_1370257_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY41587.1|1370253_1371492_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY41588.1|1371491_1372418_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY41589.1|1372520_1373636_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41590.1|1373651_1374602_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41591.1|1374955_1375537_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY41592.1|1375533_1376367_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY43905.1|1376577_1377891_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY41593.1|1378067_1378949_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY41594.1|1378968_1379820_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY41595.1|1379872_1380961_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY41596.1|1381071_1382199_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43906.1|1382433_1383045_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY41597.1|1383143_1384094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41598.1|1384315_1384693_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY43907.1|1384840_1385338_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY41599.1|1385334_1385862_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY41600.1|1385995_1386811_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41601.1|1386823_1388005_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY41602.1|1388052_1388946_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY43908.1|1389072_1389543_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41603.1|1389668_1390496_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY41604.1|1390524_1391301_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY41605.1|1391297_1391591_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY41606.1|1391587_1392052_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY41607.1|1392063_1392849_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY41608.1|1392874_1393375_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY41609.1|1393457_1394636_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY41610.1|1396263_1396599_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY41611.1|1396786_1398235_+	CoA transferase	NA	NA	NA	NA	NA
AZY41612.1|1398292_1398637_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY41613.1|1398743_1399283_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY41614.1|1399375_1400326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41615.1|1400312_1400795_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41616.1|1401064_1401496_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41617.1|1401677_1402082_-	DoxX family protein	NA	NA	NA	NA	NA
AZY41618.1|1403318_1403642_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41619.1|1403644_1404532_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY41620.1|1404564_1404990_-	universal stress protein	NA	NA	NA	NA	NA
AZY41621.1|1405061_1405415_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41622.1|1405654_1406161_-	hypothetical protein	NA	NA	NA	NA	NA
AZY41623.1|1406199_1407531_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY41624.1|1407590_1408406_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY41625.1|1408402_1409257_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY43909.1|1412319_1414863_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY41626.1|1416229_1417984_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY41627.1|1417980_1420101_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY41628.1|1420105_1422301_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY43910.1|1422297_1425639_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY41629.1|1428441_1429392_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41630.1|1429457_1429637_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43911.1|1429753_1430476_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY41631.1|1430495_1431641_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY41632.1|1432548_1433499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1840994	1889009	4101882	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZY41974.1|1840994_1841945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41975.1|1842043_1844644_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY41976.1|1844750_1845755_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY41977.1|1845863_1847204_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY41978.1|1847244_1848273_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41979.1|1848468_1849014_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY41980.1|1849010_1849571_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY41981.1|1849669_1850620_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY41982.1|1850657_1851245_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY41983.1|1851262_1851646_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY41984.1|1853005_1854298_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY41985.1|1854432_1855473_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY43931.1|1855570_1856587_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY41986.1|1856854_1857502_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY41987.1|1857627_1858386_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY43932.1|1858460_1859150_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY41988.1|1859167_1860052_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY41989.1|1860048_1860828_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY41990.1|1860854_1861532_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43933.1|1861820_1862573_+	hypothetical protein	NA	NA	NA	NA	NA
AZY41991.1|1862691_1864092_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY41992.1|1864115_1864514_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY41993.1|1864689_1864890_+	copper chaperone	NA	NA	NA	NA	NA
AZY41994.1|1865028_1865757_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY41995.1|1865890_1867306_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY41996.1|1867309_1868173_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY41997.1|1868185_1868935_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY41998.1|1869117_1871133_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY43934.1|1871114_1871663_-	arylesterase	NA	NA	NA	NA	NA
AZY41999.1|1871739_1872459_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY42000.1|1872557_1873508_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42001.1|1873606_1874557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42002.1|1874705_1875044_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY42003.1|1875101_1875263_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY42004.1|1875294_1875495_-	CsbD family protein	NA	NA	NA	NA	NA
AZY42005.1|1875760_1878334_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY42006.1|1878404_1880978_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY42007.1|1883504_1883993_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY42008.1|1884084_1885236_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY42009.1|1885289_1886111_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY42010.1|1886149_1887379_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY42011.1|1887507_1887948_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY42012.1|1887892_1888072_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42013.1|1888058_1889009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1892402	1953607	4101882	protease,transposase,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY42018.1|1892402_1895264_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY42019.1|1895253_1896219_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY42020.1|1896278_1898273_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY42021.1|1898371_1899322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42022.1|1899318_1899693_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42023.1|1899954_1901163_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY42024.1|1901159_1903460_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY42025.1|1903512_1906125_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY42026.1|1906484_1908410_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY42027.1|1908406_1909303_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY42028.1|1909309_1910449_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY42029.1|1910448_1911270_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY42030.1|1912840_1913170_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY42031.1|1913552_1914809_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY42032.1|1914883_1915165_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42033.1|1915206_1915527_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42034.1|1915833_1916037_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY42035.1|1916120_1916687_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY42036.1|1917032_1917233_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY42037.1|1917344_1917923_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY42038.1|1918101_1919412_+	trigger factor	NA	NA	NA	NA	NA
AZY42039.1|1919414_1920068_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY42040.1|1920172_1921477_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY42041.1|1921665_1924119_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY42042.1|1924242_1925193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42043.1|1925420_1926644_+	CoA transferase	NA	NA	NA	NA	NA
AZY42044.1|1926709_1927681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY42045.1|1927693_1928149_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY42046.1|1928162_1928966_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY42047.1|1928962_1929394_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42048.1|1929390_1930548_+	thiolase	NA	NA	NA	NA	NA
AZY42049.1|1930569_1931346_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY42050.1|1933510_1934227_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY42051.1|1934219_1934861_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY42052.1|1934895_1935627_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42053.1|1935644_1935857_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42054.1|1936427_1937378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42055.1|1938935_1939664_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY42056.1|1939714_1940917_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY42057.1|1940994_1943031_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY42058.1|1943283_1943775_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY42059.1|1943990_1944503_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY42060.1|1944520_1945732_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY42061.1|1945769_1946180_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY42062.1|1946181_1946505_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY42063.1|1946507_1947020_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY42064.1|1947149_1949012_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY42065.1|1949021_1949363_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY42066.1|1949362_1949557_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY42067.1|1949681_1950575_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY42068.1|1950571_1951522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42069.1|1951646_1952456_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY42070.1|1952656_1953607_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	1981390	2033187	4101882	protease,transposase,tRNA	Klosneuvirus(22.22%)	50	NA	NA
AZY42090.1|1981390_1984015_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY42091.1|1984001_1984256_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY42092.1|1984322_1984904_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42093.1|1985207_1985468_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY42094.1|1985633_1986257_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY42095.1|1986256_1987030_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY42096.1|1987026_1988235_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY42097.1|1988260_1988734_-	RidA family protein	NA	NA	NA	NA	NA
AZY42098.1|1988807_1989758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42099.1|1989856_1990807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42100.1|1990905_1992255_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY42101.1|1993020_1993776_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY42102.1|1993868_1996751_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY42103.1|1997073_1997499_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY42104.1|1997526_1998675_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY42105.1|1998671_1999178_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY42106.1|1999184_2000480_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY42107.1|2000520_2001825_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY42108.1|2001826_2002465_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42109.1|2002467_2003628_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY42110.1|2003654_2005010_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY42111.1|2005013_2006084_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY42112.1|2006222_2006459_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY42113.1|2006546_2007653_+	GTPase HflX	NA	NA	NA	NA	NA
AZY42114.1|2007618_2008923_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY42115.1|2008941_2009841_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY42116.1|2010024_2011182_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY42117.1|2011246_2012554_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY42118.1|2012667_2013207_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY42119.1|2013484_2013697_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY42120.1|2013716_2015747_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY43936.1|2016546_2018715_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY42121.1|2019124_2019424_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42122.1|2019708_2020122_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY42123.1|2020081_2021032_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42124.1|2021018_2021219_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42125.1|2021231_2022317_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY42126.1|2022332_2023094_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY42127.1|2023090_2024014_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY42128.1|2024112_2024637_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY42129.1|2024645_2025389_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY42130.1|2025484_2025724_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42131.1|2025737_2025890_-	lipoprotein	NA	NA	NA	NA	NA
AZY42132.1|2025975_2027466_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY42133.1|2027557_2028496_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY42134.1|2028492_2028669_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY42135.1|2028671_2029334_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY43937.1|2030955_2031099_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY42136.1|2031095_2032070_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42137.1|2032236_2033187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2039157	2095251	4101882	transposase	uncultured_Caudovirales_phage(20.0%)	55	NA	NA
AZY42143.1|2039157_2040108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42144.1|2041153_2043019_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY43938.1|2043276_2044797_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY42145.1|2044884_2045535_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY42146.1|2046483_2047779_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY42147.1|2047800_2048685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42148.1|2048783_2049659_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY42149.1|2049648_2050005_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY42150.1|2050078_2051110_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY42151.1|2051239_2051419_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY42152.1|2051516_2052041_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY42153.1|2052051_2052888_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY42154.1|2053000_2053372_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY42155.1|2053368_2053920_+	ATPase	NA	NA	NA	NA	NA
AZY42156.1|2053935_2055627_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY42157.1|2055675_2056356_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42158.1|2056603_2057068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42159.1|2057237_2058167_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY42160.1|2058179_2058827_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42161.1|2058900_2060718_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY42162.1|2060801_2061752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42163.1|2062404_2063355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42164.1|2063373_2063721_-	GFA family protein	NA	NA	NA	NA	NA
AZY42165.1|2063749_2065189_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY42166.1|2065207_2065603_-	VOC family protein	NA	NA	NA	NA	NA
AZY42167.1|2065777_2066386_+	peptidase S16	NA	NA	NA	NA	NA
AZY42168.1|2066398_2067217_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY42169.1|2067168_2068143_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY42170.1|2068171_2069233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42171.1|2069229_2071446_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY42172.1|2071459_2071918_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY42173.1|2072075_2072420_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42174.1|2072576_2073482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43939.1|2073568_2074582_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY43940.1|2076561_2077578_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY42175.1|2077720_2079073_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY42176.1|2079247_2079544_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42177.1|2080681_2081632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42178.1|2082117_2082294_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42179.1|2082265_2082904_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42180.1|2082978_2083950_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY42181.1|2083953_2084808_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AZY42182.1|2084826_2085648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY42183.1|2085679_2086474_+	amidase	NA	NA	NA	NA	NA
AZY42184.1|2086522_2087128_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43941.1|2087124_2087919_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY42185.1|2088204_2089710_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY42186.1|2089751_2090534_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AZY42187.1|2090603_2091050_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42188.1|2091046_2092273_-	NnrS family protein	NA	NA	NA	NA	NA
AZY42189.1|2092265_2092670_-	preprotein translocase subunit TatC	NA	NA	NA	NA	NA
AZY42190.1|2092829_2093132_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
AZY42191.1|2093128_2094079_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42192.1|2094065_2094257_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42193.1|2094300_2095251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2343965	2405313	4101882	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY42377.1|2343965_2344916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42378.1|2345032_2345752_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42379.1|2345924_2346911_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42380.1|2346911_2347394_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY42381.1|2347397_2348681_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY42382.1|2348677_2349616_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY42383.1|2349612_2351322_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY42384.1|2351331_2352579_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY43952.1|2354189_2355479_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY42385.1|2356616_2357390_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY42386.1|2358051_2358795_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42387.1|2358869_2359610_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42388.1|2359805_2360642_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42389.1|2360692_2361463_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY42390.1|2361512_2362565_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY42391.1|2362561_2363188_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY42392.1|2363184_2364231_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY42393.1|2364397_2365414_+	folate-binding protein	NA	NA	NA	NA	NA
AZY43953.1|2365512_2366463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42394.1|2369203_2370493_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY42395.1|2370611_2371082_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY42396.1|2371092_2372301_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY42397.1|2372447_2372912_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY42398.1|2372935_2373886_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42399.1|2374870_2375644_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY42400.1|2375640_2376639_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42401.1|2376723_2377500_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY42402.1|2377655_2379323_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY42403.1|2379640_2380765_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42404.1|2380891_2381515_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42405.1|2381511_2383413_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY42406.1|2383461_2384256_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY42407.1|2384268_2385270_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY42408.1|2385266_2385773_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY42409.1|2385765_2386614_-	hydrolase	NA	NA	NA	NA	NA
AZY42410.1|2386711_2387254_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42411.1|2387297_2388248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42412.1|2388403_2388730_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY42413.1|2388726_2389011_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY42414.1|2389007_2389487_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY42415.1|2389483_2391112_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY42416.1|2391108_2391453_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY42417.1|2391452_2394386_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY42418.1|2395544_2396495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42419.1|2396593_2396890_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42420.1|2396996_2397914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42421.1|2397918_2398632_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY42422.1|2398645_2399617_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY42423.1|2401336_2401717_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42424.1|2401720_2402908_+	MFS transporter	NA	NA	NA	NA	NA
AZY43954.1|2403346_2404069_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY42425.1|2404362_2405313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2426104	2497258	4101882	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY42440.1|2426104_2427055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42441.1|2427607_2429233_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY43959.1|2429282_2430317_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY42442.1|2430319_2431666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43960.1|2431662_2433177_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY42443.1|2433167_2434178_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42444.1|2434651_2435593_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY42445.1|2435601_2436570_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY42446.1|2438109_2439078_+	transporter	NA	NA	NA	NA	NA
AZY42447.1|2439255_2440245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY42448.1|2440291_2441050_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY42449.1|2441239_2441977_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY42450.1|2442075_2443026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42451.1|2443210_2443993_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY42452.1|2443986_2444688_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY42453.1|2444927_2445530_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42454.1|2446856_2447807_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42455.1|2447803_2449360_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY42456.1|2449352_2450126_-	oxidoreductase	NA	NA	NA	NA	NA
AZY42457.1|2450184_2451135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42458.1|2451216_2452392_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY42459.1|2452405_2454463_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY42460.1|2454459_2455485_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY42461.1|2455496_2456786_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY42462.1|2456808_2457906_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY42463.1|2457902_2458793_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY42464.1|2458789_2460874_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY42465.1|2460905_2462075_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY42466.1|2462116_2462857_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY42467.1|2462856_2463627_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY42468.1|2464482_2465268_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY42469.1|2465294_2467379_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42470.1|2467546_2469502_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY43961.1|2469825_2470326_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY42471.1|2470424_2471951_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY43962.1|2472088_2472976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42472.1|2472990_2473944_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY42473.1|2473995_2476086_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY42474.1|2476101_2476488_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY42475.1|2479181_2479985_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY42476.1|2481278_2482181_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42477.1|2482245_2483022_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY42478.1|2483343_2484393_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42479.1|2484516_2486187_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY42480.1|2486191_2486986_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY42481.1|2487084_2488035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42482.1|2488054_2488960_-	pirin family protein	NA	NA	NA	NA	NA
AZY42483.1|2489037_2489736_-	pirin family protein	NA	NA	NA	NA	NA
AZY42484.1|2489895_2490840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42485.1|2490849_2492340_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY42486.1|2492336_2493404_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY42487.1|2493467_2494880_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY42488.1|2495065_2496286_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY42489.1|2496307_2497258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2538199	2600046	4101882	tRNA,transposase,protease	Planktothrix_phage(14.29%)	60	NA	NA
AZY42528.1|2538199_2539150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42529.1|2539248_2539857_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY42530.1|2539907_2540234_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY42531.1|2540280_2542506_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY42532.1|2543173_2546578_-	nuclease	NA	NA	NA	NA	NA
AZY42533.1|2546590_2549251_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42534.1|2549454_2550657_-	MFS transporter	NA	NA	NA	NA	NA
AZY42535.1|2551343_2552456_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY42536.1|2552462_2553413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42537.1|2553511_2553913_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY42538.1|2553985_2554564_-|protease	protease	protease	NA	NA	NA	NA
AZY43965.1|2554681_2555170_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY42539.1|2555183_2556116_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY42540.1|2556153_2557041_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY42541.1|2557198_2558893_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY42542.1|2558909_2560166_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY42543.1|2560303_2560849_-	acyl dehydratase	NA	NA	NA	NA	NA
AZY42544.1|2560880_2562440_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY42545.1|2562568_2563321_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY42546.1|2563342_2564035_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY42547.1|2564057_2564849_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42548.1|2564875_2565781_-	agmatinase	NA	NA	NA	NA	NA
AZY42549.1|2565973_2566810_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42550.1|2566901_2567924_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY42551.1|2568060_2569113_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY42552.1|2569117_2570308_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY42553.1|2570310_2570790_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY42554.1|2570975_2571455_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY42555.1|2571462_2571699_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42556.1|2571718_2572120_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY42557.1|2572122_2572374_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY42558.1|2572428_2573310_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY42559.1|2573534_2573981_+	GFA family protein	NA	NA	NA	NA	NA
AZY42560.1|2574065_2575130_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY42561.1|2575266_2575848_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY42562.1|2576082_2577213_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY42563.1|2577390_2578617_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY42564.1|2578675_2579191_+	transporter	NA	NA	NA	NA	NA
AZY42565.1|2579213_2579540_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY42566.1|2579573_2580764_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZY42567.1|2580837_2581242_+	GFA family protein	NA	NA	NA	NA	NA
AZY42568.1|2581458_2582409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42569.1|2582507_2583278_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY42570.1|2583274_2583946_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY42571.1|2583942_2584584_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY42572.1|2584596_2585517_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY42573.1|2585677_2586838_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42574.1|2586879_2587830_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY42575.1|2588428_2588653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42576.1|2588817_2590512_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY42577.1|2590633_2590903_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY42578.1|2591018_2591417_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY42579.1|2591427_2592384_-	glutathione synthetase	NA	NA	NA	NA	NA
AZY42580.1|2592520_2593066_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY42581.1|2593086_2595036_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY42582.1|2595423_2596200_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY42583.1|2596205_2596598_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42584.1|2597019_2597970_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42585.1|2597966_2599064_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY42586.1|2599095_2600046_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2729871	2770540	4101882	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
AZY42696.1|2729871_2730822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42697.1|2730932_2731115_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42698.1|2731214_2731811_-	lipoprotein	NA	NA	NA	NA	NA
AZY42699.1|2731994_2733086_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42700.1|2733585_2733996_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42701.1|2734054_2734396_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY42702.1|2734401_2736819_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY42703.1|2736831_2737854_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY42704.1|2737928_2738288_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY42705.1|2738303_2738501_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY42706.1|2738836_2739787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42707.1|2739773_2739962_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42708.1|2739981_2740431_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY42709.1|2740427_2741378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42710.1|2741488_2742937_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY42711.1|2743051_2743333_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42712.1|2743436_2744387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42713.1|2744631_2745345_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY42714.1|2745467_2745695_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY42715.1|2745989_2746628_-	DedA family protein	NA	NA	NA	NA	NA
AZY42716.1|2746700_2747771_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY42717.1|2747767_2748718_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42718.1|2749133_2749658_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY42719.1|2749661_2749931_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42720.1|2750129_2751191_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY42721.1|2751274_2752909_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY42722.1|2752910_2753714_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY42723.1|2753742_2754702_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY42724.1|2754705_2756220_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42725.1|2756256_2757261_-	peptidase M20	NA	NA	NA	NA	NA
AZY42726.1|2757692_2758163_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY42727.1|2758198_2758810_-	LysE family translocator	NA	NA	NA	NA	NA
AZY42728.1|2758840_2759464_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY42729.1|2759544_2761077_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY42730.1|2761111_2762353_-	MFS transporter	NA	NA	NA	NA	NA
AZY42731.1|2762396_2763428_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY42732.1|2763424_2764594_-	amine oxidase	NA	NA	NA	NA	NA
AZY42733.1|2764587_2765268_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY42734.1|2765429_2766272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42735.1|2766434_2767406_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY42736.1|2767577_2768456_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY42737.1|2768478_2769549_-	FUSC family protein	NA	NA	NA	NA	NA
AZY42738.1|2769589_2770540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2826005	2898875	4101882	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZY42782.1|2826005_2826422_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY42783.1|2826532_2827165_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY42784.1|2827193_2827637_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY42785.1|2827658_2828750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42786.1|2828804_2829605_-	aldolase	NA	NA	NA	NA	NA
AZY42787.1|2829740_2830361_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY42788.1|2830500_2830974_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42789.1|2832113_2833064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42790.1|2833060_2840722_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY42791.1|2840962_2845009_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY42792.1|2845321_2845903_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY42793.1|2845899_2847198_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY42794.1|2847277_2848306_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY42795.1|2848229_2848580_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42796.1|2848566_2849517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42797.1|2849513_2850464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42798.1|2850780_2851386_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY42799.1|2851439_2852753_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY42800.1|2852827_2853298_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY42801.1|2853297_2854086_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY42802.1|2854096_2855749_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY42803.1|2855836_2856787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43976.1|2857948_2858455_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY42804.1|2858451_2859216_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY42805.1|2859231_2859516_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY42806.1|2859580_2860570_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY42807.1|2860741_2861671_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY42808.1|2861642_2862329_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY42809.1|2862362_2862908_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY42810.1|2862952_2864218_+	peptidase M48	NA	NA	NA	NA	NA
AZY42811.1|2864214_2865117_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY42812.1|2866298_2867243_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY42813.1|2867337_2868855_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42814.1|2868896_2870525_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY42815.1|2870632_2871514_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42816.1|2874626_2875001_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY42817.1|2875025_2875364_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY42818.1|2875407_2877042_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY42819.1|2877080_2878427_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY43977.1|2878534_2879956_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY42820.1|2880025_2880610_-	nitroreductase	NA	NA	NA	NA	NA
AZY42821.1|2880712_2881663_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42822.1|2881797_2882904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42823.1|2882914_2884012_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY42824.1|2884156_2885362_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY42825.1|2885368_2885890_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY42826.1|2885886_2886378_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY42827.1|2886374_2886626_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY42828.1|2886606_2887092_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY42829.1|2887227_2890689_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42830.1|2890685_2891591_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY42831.1|2891600_2892032_-	lipoprotein	NA	NA	NA	NA	NA
AZY43978.1|2892278_2892782_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY42832.1|2892793_2894260_+	MFS transporter	NA	NA	NA	NA	NA
AZY42833.1|2894334_2895210_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43979.1|2895206_2896214_-	biotin synthase	NA	NA	NA	NA	NA
AZY42834.1|2896681_2896987_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY42835.1|2897077_2897668_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43980.1|2897858_2898875_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2902018	2968829	4101882	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY42838.1|2902018_2902969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42839.1|2903067_2904018_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42840.1|2904014_2904809_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY42841.1|2904840_2905545_-	oxidoreductase	NA	NA	NA	NA	NA
AZY42842.1|2905619_2906420_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY42843.1|2906416_2906824_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY42844.1|2906820_2907462_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY42845.1|2907454_2909476_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY42846.1|2910715_2912047_+	MFS transporter	NA	NA	NA	NA	NA
AZY42847.1|2912043_2912994_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42848.1|2914700_2915006_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42849.1|2915674_2916013_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY42850.1|2920566_2921169_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY42851.1|2921265_2922555_+	MFS transporter	NA	NA	NA	NA	NA
AZY42852.1|2922612_2923344_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY42853.1|2923340_2924144_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY42854.1|2924140_2925229_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY42855.1|2925225_2926155_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY42856.1|2926303_2927449_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42857.1|2927470_2928421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42858.1|2928751_2932573_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY42859.1|2932729_2933398_-	lipoprotein	NA	NA	NA	NA	NA
AZY42860.1|2933402_2935076_-	MCE family protein	NA	NA	NA	NA	NA
AZY42861.1|2935094_2936414_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY42862.1|2936418_2938770_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY42863.1|2938789_2940958_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY42864.1|2940954_2946144_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY42865.1|2946233_2946548_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY42866.1|2946775_2947021_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY42867.1|2947115_2947634_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY42868.1|2947733_2948939_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY42869.1|2949054_2950452_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY42870.1|2950568_2951147_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY42871.1|2951219_2952611_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY42872.1|2952778_2953729_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42873.1|2954009_2954630_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY42874.1|2954626_2955040_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY42875.1|2955036_2956080_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY42876.1|2956135_2956324_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42877.1|2956333_2957098_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY42878.1|2957188_2957845_+	adenylate kinase	NA	NA	NA	NA	NA
AZY42879.1|2957936_2958695_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY42880.1|2958720_2960322_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY42881.1|2960522_2961527_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY42882.1|2961627_2961891_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY42883.1|2962008_2962785_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY42884.1|2963375_2964326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42885.1|2966709_2967822_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY42886.1|2967878_2968829_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	2999215	3039453	4101882	transposase	Planktothrix_phage(50.0%)	39	NA	NA
AZY42915.1|2999215_3000166_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42916.1|3000152_3000398_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42917.1|3000286_3001183_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY42918.1|3003460_3005686_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY42919.1|3005850_3006939_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY42920.1|3006895_3007549_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY42921.1|3007596_3008394_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42922.1|3008925_3009876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42923.1|3009956_3011105_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY42924.1|3011161_3012112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42925.1|3012098_3012317_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42926.1|3012210_3012516_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY42927.1|3012544_3012979_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY42928.1|3012980_3014225_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY42929.1|3014221_3014932_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43982.1|3014946_3015858_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY42930.1|3016227_3017178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42931.1|3017269_3017674_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42932.1|3017670_3018129_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42933.1|3018135_3019044_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43983.1|3019040_3019907_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY42934.1|3019893_3020721_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY42935.1|3020731_3021859_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY42936.1|3022936_3024175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42937.1|3024216_3025479_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY42938.1|3025485_3026238_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY42939.1|3026289_3026475_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42940.1|3026750_3027215_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY42941.1|3027246_3027906_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY42942.1|3028050_3030159_+	AsmA family protein	NA	NA	NA	NA	NA
AZY42943.1|3030155_3031106_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42944.1|3031209_3031830_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43984.1|3031933_3032674_+	oxidoreductase	NA	NA	NA	NA	NA
AZY42945.1|3033808_3034933_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42946.1|3034978_3035347_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42947.1|3035588_3036539_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY42948.1|3037574_3038117_-	hypothetical protein	NA	NA	NA	NA	NA
AZY42949.1|3038321_3038516_+	hypothetical protein	NA	NA	NA	NA	NA
AZY42950.1|3038502_3039453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3277468	3312306	4101882	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZY43136.1|3277468_3278419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43137.1|3278863_3279175_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY43138.1|3279174_3279705_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43139.1|3279867_3280818_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43140.1|3281107_3281572_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY43141.1|3281586_3283092_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY43142.1|3283345_3284953_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY43143.1|3285008_3285914_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43144.1|3286354_3287305_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43145.1|3287403_3288354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43146.1|3288435_3289017_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY44003.1|3289441_3289747_+	RND transporter	NA	NA	NA	NA	NA
AZY43147.1|3289760_3291095_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY43148.1|3291116_3291656_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY43149.1|3291803_3292268_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY43150.1|3292410_3293526_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY43151.1|3293802_3294306_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY43152.1|3294443_3294644_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43153.1|3294634_3295357_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY43154.1|3295353_3296250_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY43155.1|3296246_3297182_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44004.1|3297187_3297811_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY43156.1|3297801_3298770_+	nickel transporter	NA	NA	NA	NA	NA
AZY43157.1|3298818_3300960_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY43158.1|3300972_3301953_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY43159.1|3301967_3302660_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY43160.1|3302686_3303598_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY43161.1|3303640_3304531_-	acyltransferase	NA	NA	NA	NA	NA
AZY43162.1|3304527_3305382_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY43163.1|3305530_3306829_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY43164.1|3306939_3307191_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY43165.1|3307270_3308311_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY43166.1|3308590_3310009_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY43167.1|3310079_3310415_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY43168.1|3310414_3311257_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY43169.1|3311355_3312306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3324135	3375014	4101882	integrase,transposase,tRNA,protease	Planktothrix_phage(33.33%)	40	3357810:3357828	3377698:3377716
AZY43178.1|3324135_3325086_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44006.1|3325398_3326877_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY43179.1|3326883_3327993_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY43180.1|3328004_3328685_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY43181.1|3328706_3329462_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44007.1|3329597_3330482_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY43182.1|3330569_3331151_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43183.1|3331243_3331366_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43184.1|3331411_3331711_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY44008.1|3331862_3332288_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43185.1|3334494_3334998_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY43186.1|3335013_3335964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43187.1|3335950_3336148_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43188.1|3336491_3337265_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43189.1|3337397_3338408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43190.1|3338559_3340215_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY43191.1|3340269_3340611_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY43192.1|3340624_3342064_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43193.1|3342196_3343012_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43194.1|3343030_3343219_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43195.1|3343205_3344156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43196.1|3345543_3346491_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43197.1|3346717_3347458_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43198.1|3347543_3348494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43199.1|3349935_3351507_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY43200.1|3351839_3353693_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43201.1|3353737_3356302_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY43202.1|3356720_3357671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3357810:3357828	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY43203.1|3360536_3361031_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY43204.1|3361047_3361998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43205.1|3361984_3362185_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43206.1|3362181_3363393_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY43207.1|3363408_3366360_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY43208.1|3366361_3369481_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY44009.1|3369477_3369618_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY43209.1|3369628_3370675_-	Fic family protein	NA	NA	NA	NA	NA
AZY43210.1|3371016_3372144_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY43211.1|3372423_3373515_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY43212.1|3373587_3374370_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY43213.1|3374366_3375014_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3377698:3377716	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 24
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3423901	3477642	4101882	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY43250.1|3423901_3424852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43251.1|3425256_3425901_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY43252.1|3425925_3426510_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY43253.1|3426610_3427228_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY43254.1|3427230_3428946_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY43255.1|3428942_3429251_-	urease subunit beta	NA	NA	NA	NA	NA
AZY43256.1|3429267_3429903_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY43257.1|3429929_3430232_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY43258.1|3430332_3431187_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY43259.1|3431768_3432041_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY43260.1|3432458_3432866_-	GFA family protein	NA	NA	NA	NA	NA
AZY43261.1|3433235_3434030_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43262.1|3434130_3435366_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY43263.1|3435434_3436451_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43264.1|3436447_3437839_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY43265.1|3437835_3439032_+	MFS transporter	NA	NA	NA	NA	NA
AZY43266.1|3439028_3440567_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY43267.1|3440563_3441823_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43268.1|3443763_3444714_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43269.1|3445480_3446575_-	CoA transferase	NA	NA	NA	NA	NA
AZY43270.1|3446567_3447902_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY43271.1|3447855_3448539_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43272.1|3448564_3449728_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY43273.1|3449724_3450726_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY43274.1|3450725_3451598_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY43275.1|3451594_3452344_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY43276.1|3452340_3453132_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY43277.1|3453128_3454268_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43278.1|3454576_3455329_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY43279.1|3455362_3456145_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43280.1|3456148_3456538_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY43281.1|3457677_3458541_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43282.1|3458576_3459665_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43283.1|3459661_3460612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43284.1|3460598_3460967_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43285.1|3460965_3463944_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43286.1|3464870_3465749_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY43287.1|3467697_3468648_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43288.1|3468644_3469112_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY43289.1|3469154_3469925_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY43290.1|3469945_3470746_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY43291.1|3470756_3472166_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY43292.1|3472260_3473046_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY44012.1|3473285_3474302_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY43293.1|3474409_3474802_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY43294.1|3474939_3475620_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY43295.1|3475624_3476623_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43296.1|3476691_3477642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3483797	3543097	4101882	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY43300.1|3483797_3485561_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY43301.1|3485672_3486551_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY43302.1|3486663_3487479_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY43303.1|3487482_3487734_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY44013.1|3487818_3488835_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY43304.1|3489165_3489387_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43305.1|3491747_3492665_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY43306.1|3493162_3494371_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY43307.1|3494450_3496022_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43308.1|3496139_3497075_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY43309.1|3497263_3498208_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY43310.1|3498276_3498492_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43311.1|3498775_3504493_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY43312.1|3504498_3505626_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY43313.1|3505681_3506308_+	aminotransferase	NA	NA	NA	NA	NA
AZY44014.1|3506579_3507596_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY43314.1|3507691_3508402_-	oxidoreductase	NA	NA	NA	NA	NA
AZY44015.1|3508398_3509388_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43315.1|3509519_3511115_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY43316.1|3511117_3511855_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43317.1|3512010_3512883_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY43318.1|3513151_3514372_+	MFS transporter	NA	NA	NA	NA	NA
AZY43319.1|3514368_3515028_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY43320.1|3515099_3515732_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY43321.1|3515761_3516280_+	flavin reductase	NA	NA	NA	NA	NA
AZY43322.1|3516290_3517400_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43323.1|3517446_3518301_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY43324.1|3518302_3519205_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43325.1|3520427_3521378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43326.1|3523134_3524124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43327.1|3524299_3525088_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY43328.1|3525084_3526116_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY43329.1|3526134_3526698_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY43330.1|3526753_3528274_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY43331.1|3528537_3529242_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY43332.1|3529249_3529987_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY43333.1|3530092_3530467_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY43334.1|3530509_3531799_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43335.1|3531795_3532965_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY43336.1|3532961_3533801_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY43337.1|3533860_3534796_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY43338.1|3534808_3535759_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43339.1|3535857_3536820_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY43340.1|3536851_3537211_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY43341.1|3537335_3538238_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY43342.1|3538239_3540012_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY43343.1|3540046_3540823_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43344.1|3542146_3543097_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3558035	3616108	4101882	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY43356.1|3558035_3558986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43357.1|3559114_3560248_-	peptidase	NA	NA	NA	NA	NA
AZY43358.1|3560291_3561197_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY43359.1|3561199_3562900_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY43360.1|3562896_3563817_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY43361.1|3563824_3564802_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY43362.1|3564860_3565895_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY43363.1|3567869_3568106_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43364.1|3568232_3569096_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY43365.1|3569184_3570006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43366.1|3570085_3570823_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43367.1|3570819_3571812_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY43368.1|3571925_3572588_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43369.1|3572632_3573781_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY43370.1|3576104_3577055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43371.1|3577395_3578346_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43372.1|3578444_3579395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43373.1|3579691_3580189_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43374.1|3580231_3582007_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY44018.1|3582053_3582881_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY43375.1|3582887_3583622_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY43376.1|3584791_3585586_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43377.1|3585875_3586466_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY43378.1|3586499_3587828_-	amidase	NA	NA	NA	NA	NA
AZY43379.1|3587902_3589048_-	transporter	NA	NA	NA	NA	NA
AZY43380.1|3589159_3590158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43381.1|3590120_3590555_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY43382.1|3592071_3592956_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY43383.1|3592952_3594158_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY43384.1|3594154_3595015_-	endonuclease	NA	NA	NA	NA	NA
AZY43385.1|3595127_3596918_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY43386.1|3596958_3597624_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY43387.1|3597624_3597933_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY44019.1|3598098_3599385_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43388.1|3600818_3601769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43389.1|3603720_3604935_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY43390.1|3605040_3606030_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY43391.1|3606026_3606635_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY43392.1|3606647_3607277_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY43393.1|3607273_3607894_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY43394.1|3607925_3608717_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY43395.1|3609559_3610024_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY43396.1|3610042_3610969_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY43397.1|3611022_3612309_-	cytochrome c	NA	NA	NA	NA	NA
AZY43398.1|3613239_3614112_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY43399.1|3614108_3615059_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY43400.1|3615157_3616108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3625908	3697249	4101882	transposase,tRNA	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
AZY43410.1|3625908_3627183_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZY43411.1|3627905_3628856_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43412.1|3628954_3629905_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43413.1|3630003_3632379_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY43414.1|3632398_3633235_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY43415.1|3633231_3634029_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY43416.1|3634025_3636215_-	CoA-binding protein	NA	NA	NA	NA	NA
AZY43417.1|3636266_3637253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43418.1|3637334_3639137_-	DNA alkylation response protein	NA	NA	NA	NA	NA
AZY43419.1|3639394_3641512_+	crotonase	NA	NA	NA	NA	NA
AZY43420.1|3641508_3642726_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY43421.1|3642747_3643236_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY43422.1|3643385_3645218_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
AZY44021.1|3645415_3646396_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
AZY43423.1|3646452_3647472_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43424.1|3647535_3648429_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43425.1|3648827_3649607_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY43426.1|3649606_3651748_+	CoA-binding protein	NA	NA	NA	NA	NA
AZY44022.1|3651895_3652840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43427.1|3652923_3653907_-	oxidoreductase	NA	NA	NA	NA	NA
AZY43428.1|3654271_3655546_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY43429.1|3655576_3656005_+	RidA family protein	NA	NA	NA	NA	NA
AZY43430.1|3656015_3656690_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
AZY43431.1|3656682_3657855_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AZY43432.1|3657987_3659007_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43433.1|3659187_3660378_+	pimeloyl-CoA dehydrogenase large subunit	NA	NA	NA	NA	NA
AZY43434.1|3660391_3661522_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY43435.1|3661565_3663287_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AZY44023.1|3663405_3664368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43436.1|3664474_3665446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43437.1|3666064_3666733_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY44024.1|3666729_3667137_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY43438.1|3667133_3668084_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43439.1|3670528_3671263_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY43440.1|3671672_3671852_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44025.1|3672042_3673356_+	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY43441.1|3673371_3674883_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43442.1|3674879_3676085_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY43443.1|3676280_3677258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43444.1|3677350_3677845_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY43445.1|3677974_3679033_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY43446.1|3679029_3680649_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY44026.1|3680608_3680917_-	GtrA family protein	NA	NA	NA	NA	NA
AZY43447.1|3680836_3681940_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY43448.1|3681936_3682392_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43449.1|3682397_3683321_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY43450.1|3683410_3684070_-	LysE family translocator	NA	NA	NA	NA	NA
AZY43451.1|3684066_3684981_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY43452.1|3685069_3686020_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44027.1|3686098_3687076_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43453.1|3687536_3688136_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43454.1|3688204_3689197_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43455.1|3689246_3690836_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY43456.1|3690876_3691773_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43457.1|3691769_3693476_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY43458.1|3693580_3694822_+	CoA transferase	NA	NA	NA	NA	NA
AZY43459.1|3694818_3695589_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY43460.1|3695637_3696339_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY43461.1|3696265_3697249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3767071	3821266	4101882	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZY43528.1|3767071_3768022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43529.1|3768144_3768873_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZY43530.1|3768879_3770148_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZY43531.1|3770144_3770978_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	NA	NA	NA	NA
AZY43532.1|3771014_3771755_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY43533.1|3771874_3773050_-	dihydroorotase	NA	NA	NA	NA	NA
AZY43534.1|3773046_3774000_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZY43535.1|3774013_3774415_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZY43536.1|3774407_3775085_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZY44033.1|3775100_3775265_-	rubredoxin	NA	NA	NA	NA	NA
AZY43537.1|3775381_3776230_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY43538.1|3776226_3776880_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZY43539.1|3776896_3778180_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZY43540.1|3778419_3780045_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZY43541.1|3780138_3780540_-	RidA family protein	NA	NA	NA	NA	NA
AZY43542.1|3780564_3780999_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY43543.1|3781000_3782650_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZY43544.1|3782690_3783860_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY43545.1|3783862_3784726_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY43546.1|3788089_3788794_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZY43547.1|3788787_3789582_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZY43548.1|3789578_3790544_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY43549.1|3790547_3791468_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY43550.1|3791564_3792728_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43551.1|3792950_3793841_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY43552.1|3793844_3794348_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43553.1|3794390_3795389_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43554.1|3795385_3796336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43555.1|3796451_3796712_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43556.1|3796903_3797854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43557.1|3797913_3798474_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZY43558.1|3799976_3800858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY43559.1|3800971_3802174_+	MFS transporter	NA	NA	NA	NA	NA
AZY43560.1|3802302_3804162_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY43561.1|3804239_3805049_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY43562.1|3805119_3806121_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZY43563.1|3806152_3807013_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY43564.1|3807212_3808217_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZY43565.1|3808213_3809800_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43566.1|3809808_3810735_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY43567.1|3810757_3811384_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY43568.1|3811482_3812433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44034.1|3812429_3813566_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY43569.1|3813619_3814396_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY43570.1|3814420_3814879_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY44035.1|3815018_3815660_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY43571.1|3815724_3817107_+	cytochrome b	NA	NA	NA	NA	NA
AZY43572.1|3817126_3817981_+	cytochrome c1	NA	NA	NA	NA	NA
AZY43573.1|3818139_3818751_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY43574.1|3818760_3819210_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY43575.1|3819728_3819869_-	hypothetical protein	NA	NA	NA	NA	NA
AZY43576.1|3819876_3820038_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY43577.1|3820113_3820329_+	hypothetical protein	NA	NA	NA	NA	NA
AZY43578.1|3820315_3821266_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025479	Bordetella pertussis strain I892 chromosome, complete genome	4101882	3999901	4031570	4101882	transposase	Moraxella_phage(50.0%)	32	NA	NA
AZY43752.1|3999901_4000387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43753.1|4000605_4001586_+	protein BugT	NA	NA	NA	NA	NA
AZY43754.1|4001852_4002662_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY43755.1|4002701_4003382_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY43756.1|4003375_4003834_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY43757.1|4003845_4004208_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY43758.1|4004290_4004974_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY43759.1|4005029_4005338_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY43760.1|4005356_4005671_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY43761.1|4005667_4008142_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY43762.1|4008149_4009541_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY43763.1|4009537_4009723_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY43764.1|4009701_4010403_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY43765.1|4010399_4011221_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY44045.1|4011201_4012326_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY43766.1|4012318_4013338_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY43767.1|4013543_4014578_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY44046.1|4014678_4015470_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY43768.1|4015552_4015927_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY43769.1|4015904_4017314_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY43770.1|4017306_4018689_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY43771.1|4019023_4020628_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY43772.1|4020663_4021677_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY43773.1|4021687_4022614_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY43774.1|4023004_4023955_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43775.1|4024124_4025351_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY43776.1|4025550_4026417_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY43777.1|4026409_4027372_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY43778.1|4027472_4028423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43779.1|4028521_4029472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43780.1|4029570_4030521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY43781.1|4030619_4031570_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
