The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	0	122073	4101146	transposase,protease,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY44049.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY44050.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY44051.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY44052.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY44053.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY44054.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY44055.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY44056.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY44057.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY44058.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY44059.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY44060.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY44061.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY44062.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY47433.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY44063.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44064.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY44065.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY44066.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44067.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY44068.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44069.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY44070.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY47434.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44071.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY44072.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY44073.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44074.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY44075.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY44076.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY44077.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY44078.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY44079.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY44080.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY44081.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY44082.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY44083.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44084.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44085.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY44086.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44087.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY44088.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY44089.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44090.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY44091.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY44092.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY44093.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44094.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44095.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44096.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44097.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY44098.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY44099.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47435.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44100.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY44101.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY44102.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY44103.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY44104.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44105.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44106.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY44107.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY44108.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY44109.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY44110.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47436.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44111.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY44112.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47437.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44113.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY44114.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY44115.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY44116.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY44117.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY44118.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY44119.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY44120.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY44121.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY44122.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY44123.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY44124.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY44125.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44126.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY44127.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY44128.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY44129.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY44130.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44131.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY44132.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY44133.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY44134.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY44135.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY44136.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY44137.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY44138.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY44139.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY44140.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44141.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY44142.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY44143.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY44144.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY47438.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY44145.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44146.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY44147.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY44148.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY44149.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44150.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY44151.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY44152.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	164893	225404	4101146	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY44184.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44185.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44186.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY47443.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY44187.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY44188.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY44189.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY47444.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY44190.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44191.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY44192.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY44193.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY44194.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY44195.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44196.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY44197.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY44198.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY44199.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY44200.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY44201.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY47445.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY44202.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44203.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY44204.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY44205.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44206.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY44207.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY44208.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY44209.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY44210.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY44211.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44212.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY44213.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44214.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44215.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY44216.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY44217.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY44218.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY44219.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY44220.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY44221.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY47446.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44222.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY44223.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY44224.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY44225.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY44226.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY44227.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY44228.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY44229.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY44230.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	233336	286924	4101146	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY44238.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44239.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44240.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44241.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY44242.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY44243.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44244.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44245.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44246.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44247.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY44248.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY44249.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY44250.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY44251.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY44252.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY44253.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY44254.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY47447.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY44255.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY44256.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY44257.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZY44258.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY44259.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44260.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY44261.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZY44262.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44263.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44264.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44265.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY44266.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY44267.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY44268.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY44269.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY44270.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY44271.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY44272.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44273.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44274.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY44275.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44276.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY44277.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY44278.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZY44279.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZY44280.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY44281.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY44282.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY44283.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY44284.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	390857	448366	4101146	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY44383.1|390857_391808_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44384.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
AZY44385.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY44386.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
AZY44387.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44388.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
AZY44389.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44390.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY47453.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY44391.1|401157_402141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44392.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44393.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY44394.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
AZY44395.1|404930_406637_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY44396.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44397.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY44398.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44399.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47454.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44400.1|412386_413337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44401.1|413425_414340_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY44402.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
AZY44403.1|415085_416009_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY44404.1|416014_416470_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44405.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY47455.1|417489_417798_+	GtrA family protein	NA	NA	NA	NA	NA
AZY44406.1|417757_419377_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY44407.1|419373_420432_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY44408.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY44409.1|421148_422126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44410.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY44411.1|423523_425035_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY47456.1|425050_426364_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY44412.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44413.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY44414.1|430322_431273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44415.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY44416.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
AZY44417.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY44418.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY44419.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY44420.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY44421.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
AZY44422.1|439210_439996_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY44423.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44424.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44425.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY44426.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY44427.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY44428.1|447415_448366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	620800	721264	4101146	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY44578.1|620800_621751_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44579.1|622449_622833_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44580.1|622890_623493_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY47464.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
AZY47465.1|624045_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44581.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY44582.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
AZY44583.1|627086_628136_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY44584.1|628283_628862_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY44585.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY44586.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY44587.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44588.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY44589.1|636789_637740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44590.1|637838_638639_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44591.1|638700_639084_+	thioredoxin	NA	NA	NA	NA	NA
AZY44592.1|639095_640529_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY44593.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY47466.1|641067_641736_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44594.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY44595.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY44596.1|643201_643624_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY44597.1|643640_644741_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY44598.1|644837_646355_-	peptidase	NA	NA	NA	NA	NA
AZY44599.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY44600.1|647291_648173_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY44601.1|648254_649349_-	porin	NA	NA	NA	NA	NA
AZY44602.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47467.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44603.1|651692_652052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44604.1|652433_653471_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44605.1|653787_655128_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY44606.1|655137_655590_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44607.1|655686_656868_+	monooxygenase	NA	NA	NA	NA	NA
AZY44608.1|656927_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY44609.1|657999_658239_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY44610.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY44611.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY44612.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY44613.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY44614.1|662102_663071_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY44615.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY44616.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY44617.1|666168_667119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44618.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY44619.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY47468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
AZY44620.1|669836_670592_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47469.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44621.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44622.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY44623.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY44624.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY44625.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY44626.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44627.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44628.1|678338_679289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44629.1|679540_679753_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47470.1|679818_680430_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY44630.1|680909_681230_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44631.1|681222_681921_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44632.1|681935_682157_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44633.1|682174_683125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47471.1|683800_684250_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY44634.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY44635.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY47472.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY44636.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY44637.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY44638.1|689420_690371_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44639.1|690388_691036_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY44640.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44641.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY44642.1|691843_692044_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44643.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY44644.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY44645.1|692830_693253_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44646.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY44647.1|694015_694534_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY44648.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY44649.1|694890_695181_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY44650.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY44651.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44652.1|698255_698789_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY44653.1|698785_699175_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY44654.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY44655.1|703128_703545_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44656.1|703763_704027_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY44657.1|704026_704839_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44658.1|704843_705086_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44659.1|705064_705616_+	lysozyme	NA	NA	NA	NA	NA
AZY44660.1|705597_706131_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY47473.1|706127_706409_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44661.1|706751_706952_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44662.1|706958_707630_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY47474.1|707985_708672_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY44663.1|708652_709225_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY44664.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY44665.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY44666.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
AZY44667.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
AZY44668.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY44669.1|713670_714987_+	protein TolB	NA	NA	NA	NA	NA
AZY44670.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY44671.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY44672.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY44673.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY44674.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44675.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44676.1|720108_720327_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44677.1|720313_721264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	748189	821351	4101146	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY44698.1|748189_749140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44699.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY44700.1|750925_752191_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY44701.1|752348_753299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44702.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY44703.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY44704.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
AZY44705.1|757815_758340_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY44706.1|758299_759250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44707.1|759471_761667_-	DNA methylase	NA	NA	NA	NA	NA
AZY44708.1|761739_762147_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY44709.1|762269_763220_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44710.1|763335_763779_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY44711.1|763841_764636_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY44712.1|764801_765938_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY44713.1|766008_767142_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY44714.1|767291_767552_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY44715.1|767585_767897_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY44716.1|768321_769470_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY44717.1|769584_770550_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY44718.1|770818_771685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44719.1|771815_773864_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY44720.1|773881_775879_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY44721.1|775913_777251_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY44722.1|777513_779367_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44723.1|779421_780903_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY44724.1|780918_781506_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY44725.1|781588_781768_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44726.1|781954_787075_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY44727.1|787152_789291_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY44728.1|789287_790610_+	protein CyaD	NA	NA	NA	NA	NA
AZY44729.1|790611_792036_+	protein CyaE	NA	NA	NA	NA	NA
AZY44730.1|792126_793035_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44731.1|793099_794014_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY44732.1|794851_795535_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY44733.1|795551_796295_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY44734.1|796324_797185_+	aminotransferase	NA	NA	NA	NA	NA
AZY44735.1|797192_797759_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44736.1|797847_798804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44737.1|798848_799601_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY44738.1|799597_801343_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY44739.1|801427_802162_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44740.1|802478_803501_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY44741.1|803516_804239_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44742.1|804383_805391_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY44743.1|805431_806964_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY44744.1|806960_808079_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY44745.1|808075_808858_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY44746.1|808869_809733_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY47476.1|809751_810849_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44747.1|810917_811844_-	VOC family protein	NA	NA	NA	NA	NA
AZY44748.1|811878_813573_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY44749.1|813772_814708_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY44750.1|814813_815764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44751.1|815862_816519_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY44752.1|816666_819375_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY44753.1|819384_820404_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY44754.1|820400_821351_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	854098	903362	4101146	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY44783.1|854098_855049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47477.1|855021_855621_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44784.1|855622_856057_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY44785.1|856053_856488_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44786.1|856471_857275_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY44787.1|857291_858107_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY47478.1|858103_858919_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY44788.1|859065_859767_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44789.1|859794_861753_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY44790.1|861835_862786_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44791.1|863006_863675_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY44792.1|863798_864905_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY44793.1|864917_868031_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY44794.1|868027_869521_+	RND transporter	NA	NA	NA	NA	NA
AZY44795.1|869535_870207_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY44796.1|870250_870745_-	azurin	NA	NA	NA	NA	NA
AZY44797.1|870885_871533_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY47479.1|871636_873685_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY44798.1|873681_875694_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY47480.1|875719_877054_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY44799.1|877162_878155_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44800.1|878221_880306_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY44801.1|880330_881302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44802.1|881430_882432_-	peptidase M14	NA	NA	NA	NA	NA
AZY44803.1|882465_883707_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY44804.1|883787_884711_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY44805.1|884788_885613_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY44806.1|885809_886826_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY44807.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44808.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY44809.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44810.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY44811.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44812.1|894460_896692_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY44813.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY44814.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY44815.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY44816.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY44817.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY44818.1|902411_903362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	912974	977914	4101146	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY44827.1|912974_913925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44828.1|913921_915772_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY44829.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY44830.1|916899_917052_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44831.1|917160_917328_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44832.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY44833.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY44834.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
AZY44835.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY44836.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY44837.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY44838.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
AZY44839.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44840.1|929332_930208_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44841.1|930233_931289_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44842.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44843.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY44844.1|934672_935623_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44845.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44846.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44847.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY44848.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44849.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44850.1|938376_939327_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44851.1|939323_939707_-	ferredoxin	NA	NA	NA	NA	NA
AZY44852.1|939761_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY44853.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY44854.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY44855.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44856.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY44857.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY44858.1|945865_948478_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY44859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY44860.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY44861.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY44862.1|952834_953785_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44863.1|953781_954756_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY44864.1|954880_955792_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY47482.1|956068_956461_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY44865.1|956590_957541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44866.1|957570_957753_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY44867.1|957791_958049_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44868.1|958525_959707_-	MFS transporter	NA	NA	NA	NA	NA
AZY44869.1|959922_960600_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY44870.1|960596_961370_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY44871.1|961447_962029_-	OmpA family protein	NA	NA	NA	NA	NA
AZY44872.1|962399_965081_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY44873.1|965080_966214_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY44874.1|966206_967292_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY44875.1|967378_968278_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY44876.1|968274_969603_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY44877.1|969617_970289_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY44878.1|970461_972192_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY44879.1|972193_972553_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY44880.1|972744_973059_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY44881.1|973101_974322_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY44882.1|974318_975260_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY44883.1|975256_976246_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY44884.1|976280_976865_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY44885.1|976963_977914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	997314	1060465	4101146	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY44899.1|997314_998265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44900.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY44901.1|999556_1000573_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY44902.1|1002081_1002654_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY44903.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY47485.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44904.1|1005221_1008401_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY44905.1|1008397_1009780_+	multidrug transporter	NA	NA	NA	NA	NA
AZY44906.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY44907.1|1010246_1010897_-	SCO family protein	NA	NA	NA	NA	NA
AZY44908.1|1011047_1013162_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY44909.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY44910.1|1014085_1014712_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY44911.1|1014708_1016463_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY44912.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY44913.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY44914.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY44915.1|1023159_1024335_-	flagellin FliC	NA	NA	NA	NA	NA
AZY44916.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44917.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY44918.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
AZY44919.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY44920.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY44921.1|1030766_1031540_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY44922.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
AZY44923.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY47486.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY44924.1|1036190_1036898_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY44925.1|1036935_1038069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44926.1|1038345_1038894_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY44927.1|1038912_1039398_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY44928.1|1039575_1040514_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY44929.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY44930.1|1040879_1041824_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44931.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY44932.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44933.1|1044540_1045401_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY44934.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44935.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY44936.1|1046279_1047230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44937.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY44938.1|1048701_1049025_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY44939.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY44940.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY44941.1|1050628_1051576_+	motility protein MotB	NA	NA	NA	NA	NA
AZY44942.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
AZY44943.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY44944.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY44945.1|1054643_1056350_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY44946.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY44947.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY44948.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY44949.1|1059448_1060465_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1066449	1134611	4101146	transposase,holin,tRNA	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZY44954.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY44955.1|1068814_1069831_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY44956.1|1070163_1071099_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY44957.1|1071148_1073029_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY44958.1|1073095_1073440_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY44959.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY44960.1|1074717_1075791_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY44961.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY47488.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY44962.1|1078452_1079469_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY44963.1|1079801_1082549_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY47489.1|1082615_1084037_-	siroheme synthase	NA	NA	NA	NA	NA
AZY44964.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44965.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY44966.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY44967.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44968.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY44969.1|1087904_1088735_+	transglycosylase	NA	NA	NA	NA	NA
AZY44970.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY44971.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44972.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY44973.1|1094450_1094915_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY44974.1|1094941_1095892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47490.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY44975.1|1097080_1097938_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY44976.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY44977.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY44978.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY44979.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY44980.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY44981.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY44982.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY44983.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY44984.1|1109741_1110374_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY44985.1|1110392_1110995_+	hypothetical protein	NA	NA	NA	NA	NA
AZY44986.1|1111146_1112097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44987.1|1112899_1113700_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44988.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
AZY44989.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY44990.1|1115879_1116830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44991.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY44992.1|1117437_1118751_-	hypothetical protein	NA	NA	NA	NA	NA
AZY44993.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY44994.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY44995.1|1120692_1121469_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY44996.1|1121450_1124330_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY44997.1|1124512_1125463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY44998.1|1125630_1126455_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY44999.1|1126454_1127333_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY45000.1|1128237_1129353_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45001.1|1129360_1130176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY45002.1|1130172_1132038_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY45003.1|1132116_1132749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45004.1|1132745_1133048_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45005.1|1133090_1134611_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1316903	1385390	4101146	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZY45147.1|1316903_1317854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45148.1|1318622_1319261_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY47501.1|1320150_1320597_+	glutamate racemase	NA	NA	NA	NA	NA
AZY45149.1|1320678_1321380_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY45150.1|1321380_1322148_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY45151.1|1322144_1323383_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY45152.1|1323382_1324309_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY45153.1|1324411_1325527_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45154.1|1325542_1326493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45155.1|1326846_1327428_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY45156.1|1327424_1328258_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY47502.1|1328468_1329782_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY45157.1|1329958_1330840_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY45158.1|1330859_1331711_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY45159.1|1331763_1332852_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY45160.1|1332962_1334090_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY47503.1|1334324_1334936_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY45161.1|1335034_1335985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45162.1|1336206_1336584_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY47504.1|1336731_1337229_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY45163.1|1337225_1337753_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY45164.1|1337886_1338702_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45165.1|1338714_1339896_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY45166.1|1339943_1340837_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY47505.1|1340963_1341434_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45167.1|1341559_1342387_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY45168.1|1342415_1343192_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY45169.1|1343188_1343482_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY45170.1|1343478_1343943_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY45171.1|1343954_1344740_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY45172.1|1344765_1345266_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY45173.1|1345348_1346527_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY45174.1|1348154_1348490_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY45175.1|1348677_1350126_+	CoA transferase	NA	NA	NA	NA	NA
AZY45176.1|1350183_1350528_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY45177.1|1350634_1351174_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY45178.1|1351266_1352217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45179.1|1352203_1352686_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45180.1|1352955_1353387_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45181.1|1353568_1353973_-	DoxX family protein	NA	NA	NA	NA	NA
AZY45182.1|1355209_1355533_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45183.1|1355535_1356423_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY45184.1|1356455_1356881_-	universal stress protein	NA	NA	NA	NA	NA
AZY45185.1|1356952_1357306_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45186.1|1357545_1358052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45187.1|1358090_1359422_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY45188.1|1359481_1360297_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY45189.1|1360293_1361148_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY47506.1|1364210_1366754_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY45190.1|1368120_1369875_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY45191.1|1369871_1371992_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY45192.1|1371996_1374192_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY47507.1|1374188_1377530_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY45193.1|1380332_1381283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45194.1|1381348_1381528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47508.1|1381644_1382367_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY45195.1|1382386_1383532_-	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY45196.1|1384439_1385390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1445881	1501369	4101146	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZY45244.1|1445881_1446832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45245.1|1448033_1448480_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY45246.1|1448472_1449948_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY45247.1|1449944_1450700_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY45248.1|1450692_1451703_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY45249.1|1451692_1453369_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY45250.1|1453681_1454014_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY45251.1|1454027_1454423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45252.1|1454432_1454759_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY45253.1|1454755_1455082_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY45254.1|1455008_1456031_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY45255.1|1456027_1456408_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY45256.1|1456425_1456854_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY45257.1|1456861_1458235_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY47512.1|1458375_1458753_-	flagellar protein	NA	NA	NA	NA	NA
AZY45258.1|1459015_1460323_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY45259.1|1460383_1461214_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY45260.1|1461210_1461699_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY45261.1|1461740_1463261_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY47513.1|1463304_1463781_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY45262.1|1464584_1467182_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY45263.1|1467211_1468033_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY45264.1|1468759_1469509_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY45265.1|1469641_1470571_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY45266.1|1470668_1471385_+	UMP kinase	NA	NA	NA	NA	NA
AZY45267.1|1471399_1471960_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY45268.1|1471997_1472891_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY45269.1|1472910_1473768_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY45270.1|1473764_1474964_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY45271.1|1475003_1476338_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY45272.1|1476390_1478727_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY47514.1|1478852_1479416_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY45273.1|1479424_1480516_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY45274.1|1480587_1481043_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY45275.1|1481043_1481838_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY45276.1|1481834_1483016_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY45277.1|1483002_1483608_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY45278.1|1483604_1484378_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY45279.1|1484389_1485217_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY45280.1|1485378_1487742_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY45281.1|1487809_1488529_-	GMP synthase	NA	NA	NA	NA	NA
AZY45282.1|1488652_1489078_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY45283.1|1489112_1490063_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45284.1|1490180_1491107_+	paraslipin	NA	NA	NA	NA	NA
AZY45285.1|1491172_1492330_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY45286.1|1492310_1492778_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY45287.1|1492925_1493876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45288.1|1493892_1494327_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY45289.1|1494316_1494667_+	RnfH family protein	NA	NA	NA	NA	NA
AZY45290.1|1494863_1496018_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY45291.1|1496014_1497187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY45292.1|1497234_1498128_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY45293.1|1498173_1498611_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY45294.1|1498670_1499360_+	VIT family protein	NA	NA	NA	NA	NA
AZY45295.1|1499369_1500320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45296.1|1500418_1501369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1793939	1841954	4101146	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZY45540.1|1793939_1794890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45541.1|1794988_1797589_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY45542.1|1797695_1798700_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45543.1|1798808_1800149_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY45544.1|1800189_1801218_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45545.1|1801413_1801959_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45546.1|1801955_1802516_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY45547.1|1802614_1803565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45548.1|1803602_1804190_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY45549.1|1804207_1804591_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY45550.1|1805950_1807243_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY45551.1|1807377_1808418_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY45552.1|1808515_1809532_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY45553.1|1809799_1810447_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY45554.1|1810572_1811331_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY47526.1|1811405_1812095_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY45555.1|1812112_1812997_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY45556.1|1812993_1813773_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY45557.1|1813799_1814477_+	hypothetical protein	NA	NA	NA	NA	NA
AZY47527.1|1814765_1815518_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45558.1|1815636_1817037_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY45559.1|1817060_1817459_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY45560.1|1817634_1817835_+	copper chaperone	NA	NA	NA	NA	NA
AZY45561.1|1817973_1818702_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY45562.1|1818835_1820251_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY45563.1|1820254_1821118_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY45564.1|1821130_1821880_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY45565.1|1822062_1824078_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY47528.1|1824059_1824608_-	arylesterase	NA	NA	NA	NA	NA
AZY45566.1|1824684_1825404_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY45567.1|1825502_1826453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45568.1|1826551_1827502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45569.1|1827650_1827989_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY45570.1|1828046_1828208_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY45571.1|1828239_1828440_-	CsbD family protein	NA	NA	NA	NA	NA
AZY45572.1|1828705_1831279_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY45573.1|1831349_1833923_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY45574.1|1836449_1836938_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY47529.1|1837029_1838181_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY45575.1|1838234_1839056_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY45576.1|1839094_1840324_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY45577.1|1840452_1840893_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY45578.1|1840837_1841017_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45579.1|1841003_1841954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1845347	1906552	4101146	transposase,protease,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY45584.1|1845347_1848209_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY45585.1|1848198_1849164_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY45586.1|1849223_1851218_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY45587.1|1851316_1852267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45588.1|1852263_1852638_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45589.1|1852899_1854108_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY45590.1|1854104_1856405_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY45591.1|1856457_1859070_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY45592.1|1859429_1861355_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY45593.1|1861351_1862248_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY45594.1|1862254_1863394_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY45595.1|1863393_1864215_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY45596.1|1865785_1866115_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY45597.1|1866497_1867754_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY45598.1|1867828_1868110_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45599.1|1868151_1868472_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45600.1|1868778_1868982_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY45601.1|1869065_1869632_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY45602.1|1869977_1870178_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY45603.1|1870289_1870868_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY45604.1|1871046_1872357_+	trigger factor	NA	NA	NA	NA	NA
AZY45605.1|1872359_1873013_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY45606.1|1873117_1874422_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY45607.1|1874610_1877064_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY45608.1|1877187_1878138_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45609.1|1878365_1879589_+	CoA transferase	NA	NA	NA	NA	NA
AZY45610.1|1879654_1880626_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY45611.1|1880638_1881094_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY45612.1|1881107_1881911_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY45613.1|1881907_1882339_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45614.1|1882335_1883493_+	thiolase	NA	NA	NA	NA	NA
AZY45615.1|1883514_1884291_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY45616.1|1886455_1887172_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY45617.1|1887164_1887806_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY45618.1|1887840_1888572_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45619.1|1888589_1888802_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45620.1|1889372_1890323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45621.1|1891880_1892609_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY45622.1|1892659_1893862_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY45623.1|1893939_1895976_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY45624.1|1896228_1896720_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY45625.1|1896935_1897448_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY45626.1|1897465_1898677_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY45627.1|1898714_1899125_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY45628.1|1899126_1899450_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY45629.1|1899452_1899965_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY45630.1|1900094_1901957_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY45631.1|1901966_1902308_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY45632.1|1902307_1902502_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY45633.1|1902626_1903520_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY45634.1|1903516_1904467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45635.1|1904591_1905401_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY45636.1|1905601_1906552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1934335	1975026	4101146	transposase,protease,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZY45656.1|1934335_1936960_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY45657.1|1936946_1937201_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY45658.1|1937267_1937849_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45659.1|1938152_1938413_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY45660.1|1938578_1939202_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY45661.1|1939201_1939975_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY45662.1|1939971_1941180_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY45663.1|1941205_1941679_-	RidA family protein	NA	NA	NA	NA	NA
AZY45664.1|1941752_1942703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45665.1|1942801_1943752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45666.1|1943850_1945200_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY45667.1|1945965_1946721_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY45668.1|1946813_1949696_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY45669.1|1950018_1950444_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY45670.1|1950471_1951620_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY45671.1|1951616_1952123_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY45672.1|1952129_1953425_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY45673.1|1953465_1954770_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY45674.1|1954771_1955410_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45675.1|1955412_1956573_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY45676.1|1956599_1957955_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY45677.1|1957958_1959029_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY45678.1|1959167_1959404_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY45679.1|1959491_1960598_+	GTPase HflX	NA	NA	NA	NA	NA
AZY45680.1|1960563_1961868_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY45681.1|1961886_1962786_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY45682.1|1962969_1964127_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY45683.1|1964191_1965499_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY45684.1|1965612_1966152_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY45685.1|1966429_1966642_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY45686.1|1966661_1968692_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY47531.1|1969491_1971660_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY45687.1|1972069_1972369_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45688.1|1972653_1973067_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY45689.1|1973026_1973977_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45690.1|1974075_1975026_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	1986230	2035626	4101146	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZY45704.1|1986230_1987181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45705.1|1987177_1988452_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY45706.1|1988549_1989749_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY45707.1|1989745_1990399_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY45708.1|1990395_1991832_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY45709.1|1991819_1992179_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY45710.1|1993151_1994102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45711.1|1995147_1997013_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY47533.1|1997270_1998791_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY45712.1|1998878_1999529_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY45713.1|2000477_2001773_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY45714.1|2001794_2002679_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY47534.1|2002777_2003653_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY45715.1|2003642_2003999_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY45716.1|2004072_2005104_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY45717.1|2005233_2005413_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY45718.1|2005510_2006035_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY45719.1|2006045_2006882_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY45720.1|2006994_2007366_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY45721.1|2007362_2007914_+	ATPase	NA	NA	NA	NA	NA
AZY45722.1|2007929_2009621_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY45723.1|2009669_2010350_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45724.1|2010597_2011062_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45725.1|2011231_2012161_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY45726.1|2012173_2012821_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45727.1|2012894_2014712_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY45728.1|2014795_2015746_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45729.1|2016398_2017349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45730.1|2017367_2017715_-	GFA family protein	NA	NA	NA	NA	NA
AZY45731.1|2017743_2019183_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY45732.1|2019201_2019597_-	VOC family protein	NA	NA	NA	NA	NA
AZY45733.1|2019771_2020380_+	peptidase S16	NA	NA	NA	NA	NA
AZY45734.1|2020392_2021211_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY45735.1|2021162_2022137_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY45736.1|2022165_2023227_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45737.1|2023223_2025440_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY45738.1|2025453_2025912_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY45739.1|2026069_2026414_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45740.1|2026570_2027476_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY47535.1|2027562_2028576_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY45741.1|2030555_2031572_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY45742.1|2031714_2033067_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY45743.1|2033241_2033538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45744.1|2034675_2035626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2047122	2111491	4101146	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZY45758.1|2047122_2048073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45759.1|2048059_2048251_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45760.1|2048294_2049245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45761.1|2049343_2050309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY45762.1|2050446_2051346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45763.1|2053940_2055428_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45764.1|2055438_2056635_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY45765.1|2056707_2058027_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY45766.1|2058023_2058899_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY45767.1|2058929_2060099_-	CoA transferase	NA	NA	NA	NA	NA
AZY45768.1|2060095_2060410_-	ferredoxin	NA	NA	NA	NA	NA
AZY45769.1|2060431_2061154_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY45770.1|2061153_2061972_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY45771.1|2061976_2062504_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY45772.1|2062509_2063775_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY45773.1|2064124_2065264_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45774.1|2065341_2066214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY45775.1|2067084_2068035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45776.1|2067994_2068630_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45777.1|2068989_2070312_-	isocitrate lyase	NA	NA	NA	NA	NA
AZY47537.1|2070540_2071452_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY45778.1|2072876_2073449_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY45779.1|2073488_2075318_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZY45780.1|2075280_2076339_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY45781.1|2076376_2076838_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZY45782.1|2076922_2077669_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY45783.1|2079159_2082390_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY45784.1|2082456_2083788_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY45785.1|2084040_2084415_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY45786.1|2084517_2085696_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45787.1|2085706_2086297_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY47538.1|2086407_2087214_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY45788.1|2087239_2088034_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY45789.1|2089034_2090009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45790.1|2090167_2090680_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY45791.1|2090836_2091808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY45792.1|2093552_2094359_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY47539.1|2094355_2095492_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY45793.1|2095607_2096372_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45794.1|2096485_2097256_-	spermidine synthase	NA	NA	NA	NA	NA
AZY45795.1|2097340_2098552_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY45796.1|2098600_2098975_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY45797.1|2099075_2100338_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY45798.1|2100334_2101192_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY45799.1|2101364_2102366_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45800.1|2102817_2103768_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45801.1|2105283_2106483_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY45802.1|2106851_2107088_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY45803.1|2107151_2107319_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY45804.1|2107432_2109328_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY45805.1|2109491_2110442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45806.1|2110540_2111491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2297959	2359307	4101146	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY45942.1|2297959_2298910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45943.1|2299026_2299746_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45944.1|2299918_2300905_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45945.1|2300905_2301388_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY45946.1|2301391_2302675_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY45947.1|2302671_2303610_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY45948.1|2303606_2305316_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY45949.1|2305325_2306573_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY47549.1|2308183_2309473_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY45950.1|2310610_2311384_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY47550.1|2312045_2312789_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45951.1|2312863_2313604_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45952.1|2313799_2314636_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45953.1|2314686_2315457_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY45954.1|2315506_2316559_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY45955.1|2316555_2317182_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY45956.1|2317178_2318225_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY45957.1|2318391_2319408_+	folate-binding protein	NA	NA	NA	NA	NA
AZY45958.1|2319506_2320457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45959.1|2320480_2320945_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY45960.1|2321091_2322300_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY45961.1|2322310_2322781_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY45962.1|2322899_2324189_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY45963.1|2326929_2327880_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45964.1|2328864_2329638_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY45965.1|2329634_2330633_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45966.1|2330717_2331494_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY45967.1|2331649_2333317_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY45968.1|2333634_2334759_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY45969.1|2334885_2335509_+	hypothetical protein	NA	NA	NA	NA	NA
AZY45970.1|2335505_2337407_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY45971.1|2337455_2338250_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY45972.1|2338262_2339264_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY45973.1|2339260_2339767_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY45974.1|2339759_2340608_-	hydrolase	NA	NA	NA	NA	NA
AZY45975.1|2340705_2341248_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45976.1|2341291_2342242_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45977.1|2342397_2342724_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY45978.1|2342720_2343005_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY45979.1|2343001_2343481_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY45980.1|2343477_2345106_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY45981.1|2345102_2345447_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY45982.1|2345446_2348380_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY45983.1|2349538_2350489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY45984.1|2350587_2350884_-	hypothetical protein	NA	NA	NA	NA	NA
AZY45985.1|2350990_2351908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45986.1|2351912_2352626_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY45987.1|2352639_2353611_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY45988.1|2355330_2355711_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY45989.1|2355714_2356902_+	MFS transporter	NA	NA	NA	NA	NA
AZY45990.1|2357340_2358063_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY45991.1|2358356_2359307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2380098	2451252	4101146	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY46006.1|2380098_2381049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46007.1|2381601_2383227_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY47555.1|2383276_2384311_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY46008.1|2384313_2385660_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47556.1|2385656_2387171_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY46009.1|2387161_2388172_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46010.1|2388645_2389587_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY46011.1|2389595_2390564_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY46012.1|2392103_2393072_+	transporter	NA	NA	NA	NA	NA
AZY46013.1|2393249_2394239_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY46014.1|2394285_2395044_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY46015.1|2395233_2395971_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY46016.1|2396069_2397020_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46017.1|2397204_2397987_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY46018.1|2397980_2398682_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY46019.1|2398921_2399524_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46020.1|2400850_2401801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46021.1|2401797_2403354_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY46022.1|2403346_2404120_-	oxidoreductase	NA	NA	NA	NA	NA
AZY46023.1|2404178_2405129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46024.1|2405210_2406386_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY46025.1|2406399_2408457_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY46026.1|2408453_2409479_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY46027.1|2409490_2410780_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY46028.1|2410802_2411900_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY46029.1|2411896_2412787_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY46030.1|2412783_2414868_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY46031.1|2414899_2416069_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY46032.1|2416110_2416851_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY46033.1|2416850_2417621_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY46034.1|2418476_2419262_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY46035.1|2419288_2421373_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46036.1|2421540_2423496_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY47557.1|2423819_2424320_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY46037.1|2424418_2425945_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY47558.1|2426082_2426970_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46038.1|2426984_2427938_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY46039.1|2427989_2430080_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY46040.1|2430095_2430482_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY46041.1|2433175_2433979_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY46042.1|2435272_2436175_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46043.1|2436239_2437016_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY46044.1|2437337_2438387_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46045.1|2438510_2440181_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY46046.1|2440185_2440980_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY46047.1|2441078_2442029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46048.1|2442048_2442954_-	pirin family protein	NA	NA	NA	NA	NA
AZY46049.1|2443031_2443730_-	pirin family protein	NA	NA	NA	NA	NA
AZY47559.1|2443889_2444834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46050.1|2444843_2446334_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY46051.1|2446330_2447398_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY46052.1|2447461_2448874_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY46053.1|2449059_2450280_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY46054.1|2450301_2451252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2492193	2554040	4101146	transposase,protease,tRNA	Planktothrix_phage(14.29%)	60	NA	NA
AZY46093.1|2492193_2493144_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46094.1|2493242_2493851_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY46095.1|2493901_2494228_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY46096.1|2494274_2496500_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY46097.1|2497167_2500572_-	nuclease	NA	NA	NA	NA	NA
AZY46098.1|2500584_2503245_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46099.1|2503448_2504651_-	MFS transporter	NA	NA	NA	NA	NA
AZY46100.1|2505337_2506450_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY46101.1|2506456_2507407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46102.1|2507505_2507907_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY46103.1|2507979_2508558_-|protease	protease	protease	NA	NA	NA	NA
AZY47562.1|2508675_2509164_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY46104.1|2509177_2510110_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY46105.1|2510147_2511035_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY46106.1|2511192_2512887_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY46107.1|2512903_2514160_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY46108.1|2514297_2514843_-	acyl dehydratase	NA	NA	NA	NA	NA
AZY46109.1|2514874_2516434_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY46110.1|2516562_2517315_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY46111.1|2517336_2518029_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY46112.1|2518051_2518843_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46113.1|2518869_2519775_-	agmatinase	NA	NA	NA	NA	NA
AZY46114.1|2519967_2520804_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46115.1|2520895_2521918_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY46116.1|2522054_2523107_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY46117.1|2523111_2524302_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY46118.1|2524304_2524784_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY46119.1|2524969_2525449_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY46120.1|2525456_2525693_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46121.1|2525712_2526114_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY46122.1|2526116_2526368_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY46123.1|2526422_2527304_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY46124.1|2527528_2527975_+	GFA family protein	NA	NA	NA	NA	NA
AZY46125.1|2528059_2529124_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY46126.1|2529260_2529842_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY46127.1|2530076_2531207_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY46128.1|2531384_2532611_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY46129.1|2532669_2533185_+	transporter	NA	NA	NA	NA	NA
AZY46130.1|2533207_2533534_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY46131.1|2533567_2534758_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZY46132.1|2534831_2535236_+	GFA family protein	NA	NA	NA	NA	NA
AZY46133.1|2535452_2536403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46134.1|2536501_2537272_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY46135.1|2537268_2537940_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY46136.1|2537936_2538578_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY46137.1|2538590_2539511_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY46138.1|2539671_2540832_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46139.1|2540873_2541824_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY46140.1|2542422_2542647_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46141.1|2542811_2544506_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY46142.1|2544627_2544897_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY46143.1|2545012_2545411_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY46144.1|2545421_2546378_-	glutathione synthetase	NA	NA	NA	NA	NA
AZY46145.1|2546514_2547060_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY46146.1|2547080_2549030_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY46147.1|2549417_2550194_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY46148.1|2550199_2550592_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46149.1|2551013_2551964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46150.1|2551960_2553058_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY46151.1|2553089_2554040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2684917	2725586	4101146	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
AZY46259.1|2684917_2685868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46260.1|2685978_2686161_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46261.1|2686260_2686857_-	lipoprotein	NA	NA	NA	NA	NA
AZY46262.1|2687040_2688132_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46263.1|2688631_2689042_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46264.1|2689100_2689442_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY46265.1|2689447_2691865_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY46266.1|2691877_2692900_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY46267.1|2692974_2693334_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY46268.1|2693349_2693547_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY46269.1|2693882_2694833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46270.1|2694819_2695008_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46271.1|2695027_2695477_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY46272.1|2695473_2696424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46273.1|2696534_2697983_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY46274.1|2698097_2698379_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46275.1|2698482_2699433_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46276.1|2699677_2700391_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY46277.1|2700513_2700741_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY46278.1|2701035_2701674_-	DedA family protein	NA	NA	NA	NA	NA
AZY46279.1|2701746_2702817_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY46280.1|2702813_2703764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46281.1|2704179_2704704_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY46282.1|2704707_2704977_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46283.1|2705175_2706237_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY46284.1|2706320_2707955_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY46285.1|2707956_2708760_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46286.1|2708788_2709748_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46287.1|2709751_2711266_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46288.1|2711302_2712307_-	peptidase M20	NA	NA	NA	NA	NA
AZY46289.1|2712738_2713209_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY46290.1|2713244_2713856_-	LysE family translocator	NA	NA	NA	NA	NA
AZY46291.1|2713886_2714510_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY46292.1|2714590_2716123_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY46293.1|2716157_2717399_-	MFS transporter	NA	NA	NA	NA	NA
AZY46294.1|2717442_2718474_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY46295.1|2718470_2719640_-	amine oxidase	NA	NA	NA	NA	NA
AZY46296.1|2719633_2720314_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY46297.1|2720475_2721318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46298.1|2721480_2722452_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY46299.1|2722623_2723502_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY46300.1|2723524_2724595_-	FUSC family protein	NA	NA	NA	NA	NA
AZY46301.1|2724635_2725586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2781051	2853921	4101146	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZY46344.1|2781051_2781468_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY46345.1|2781578_2782211_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY46346.1|2782239_2782683_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY46347.1|2782704_2783796_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46348.1|2783850_2784651_-	aldolase	NA	NA	NA	NA	NA
AZY46349.1|2784786_2785407_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY46350.1|2785546_2786020_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46351.1|2787159_2788110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46352.1|2788106_2795768_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY46353.1|2796008_2800055_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY46354.1|2800367_2800949_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY46355.1|2800945_2802244_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY46356.1|2802323_2803352_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY46357.1|2803275_2803626_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46358.1|2803612_2804563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46359.1|2804559_2805510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46360.1|2805826_2806432_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY46361.1|2806485_2807799_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY46362.1|2807873_2808344_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY46363.1|2808343_2809132_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY46364.1|2809142_2810795_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY46365.1|2810882_2811833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47575.1|2812994_2813501_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY46366.1|2813497_2814262_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY46367.1|2814277_2814562_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY46368.1|2814626_2815616_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY46369.1|2815787_2816717_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY46370.1|2816688_2817375_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY46371.1|2817408_2817954_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY46372.1|2817998_2819264_+	peptidase M48	NA	NA	NA	NA	NA
AZY46373.1|2819260_2820163_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY46374.1|2821344_2822289_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46375.1|2822383_2823901_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46376.1|2823942_2825571_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY46377.1|2825678_2826560_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46378.1|2829672_2830047_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY46379.1|2830071_2830410_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY46380.1|2830453_2832088_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY46381.1|2832126_2833473_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY47576.1|2833580_2835002_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY46382.1|2835071_2835656_-	nitroreductase	NA	NA	NA	NA	NA
AZY46383.1|2835758_2836709_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46384.1|2836843_2837950_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46385.1|2837960_2839058_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY46386.1|2839202_2840408_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY46387.1|2840414_2840936_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY46388.1|2840932_2841424_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY46389.1|2841420_2841672_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY47577.1|2841652_2842138_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY46390.1|2842273_2845735_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46391.1|2845731_2846637_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY46392.1|2846646_2847078_-	lipoprotein	NA	NA	NA	NA	NA
AZY47578.1|2847324_2847828_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY46393.1|2847839_2849306_+	MFS transporter	NA	NA	NA	NA	NA
AZY46394.1|2849380_2850256_-	hypothetical protein	NA	NA	NA	NA	NA
AZY47579.1|2850252_2851260_-	biotin synthase	NA	NA	NA	NA	NA
AZY46395.1|2851727_2852033_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY46396.1|2852123_2852714_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46397.1|2852904_2853921_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2857064	2923876	4101146	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY46400.1|2857064_2858015_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46401.1|2858113_2859064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46402.1|2859060_2859855_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY46403.1|2859886_2860591_-	oxidoreductase	NA	NA	NA	NA	NA
AZY46404.1|2860665_2861466_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY46405.1|2861462_2861870_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY46406.1|2861866_2862508_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY46407.1|2862500_2864522_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY46408.1|2865761_2867093_+	MFS transporter	NA	NA	NA	NA	NA
AZY46409.1|2867089_2868040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46410.1|2869746_2870052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46411.1|2870720_2871059_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY46412.1|2875613_2876216_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46413.1|2876312_2877602_+	MFS transporter	NA	NA	NA	NA	NA
AZY46414.1|2877659_2878391_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY46415.1|2878387_2879191_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY46416.1|2879187_2880276_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY46417.1|2880272_2881202_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY46418.1|2881350_2882496_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46419.1|2882517_2883468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46420.1|2883798_2887620_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY46421.1|2887776_2888445_-	lipoprotein	NA	NA	NA	NA	NA
AZY46422.1|2888449_2890123_-	MCE family protein	NA	NA	NA	NA	NA
AZY46423.1|2890141_2891461_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY46424.1|2891465_2893817_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY47580.1|2893836_2896005_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY46425.1|2896001_2901191_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY46426.1|2901280_2901595_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY46427.1|2901822_2902068_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY46428.1|2902162_2902681_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY46429.1|2902780_2903986_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY46430.1|2904101_2905499_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY46431.1|2905615_2906194_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY46432.1|2906266_2907658_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY46433.1|2907825_2908776_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46434.1|2909056_2909677_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY46435.1|2909673_2910087_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY46436.1|2910083_2911127_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY46437.1|2911182_2911371_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46438.1|2911380_2912145_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY46439.1|2912235_2912892_+	adenylate kinase	NA	NA	NA	NA	NA
AZY46440.1|2912983_2913742_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY46441.1|2913767_2915369_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY46442.1|2915569_2916574_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY46443.1|2916674_2916938_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY46444.1|2917055_2917832_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY46445.1|2918422_2919373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46446.1|2921756_2922869_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY46447.1|2922925_2923876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	2954262	2993451	4101146	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY46476.1|2954262_2955213_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46477.1|2955199_2955445_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46478.1|2955333_2956230_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY46479.1|2958507_2960733_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY46480.1|2960897_2961986_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY46481.1|2961942_2962596_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY46482.1|2962643_2963441_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46483.1|2963972_2964923_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46484.1|2965003_2966152_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY46485.1|2966208_2967159_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46486.1|2967145_2967364_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46487.1|2967257_2967563_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY46488.1|2967591_2968026_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY46489.1|2968027_2969272_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY46490.1|2969268_2969979_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY47582.1|2969993_2970905_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY46491.1|2971267_2971672_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46492.1|2971668_2972127_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46493.1|2972133_2973042_+	hypothetical protein	NA	NA	NA	NA	NA
AZY47583.1|2973038_2973905_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY46494.1|2973891_2974719_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY46495.1|2974729_2975857_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY46496.1|2976934_2978173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46497.1|2978214_2979477_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46498.1|2979483_2980236_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY46499.1|2980287_2980473_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46500.1|2980748_2981213_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY46501.1|2981244_2981904_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY46502.1|2982048_2984157_+	AsmA family protein	NA	NA	NA	NA	NA
AZY46503.1|2984153_2985104_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46504.1|2985207_2985828_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY47584.1|2985931_2986672_+	oxidoreductase	NA	NA	NA	NA	NA
AZY46505.1|2987806_2988931_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46506.1|2988976_2989345_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46507.1|2989586_2990537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46508.1|2991572_2992115_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46509.1|2992319_2992514_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46510.1|2992500_2993451_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	3231466	3266304	4101146	transposase,holin	Erwinia_phage(20.0%)	36	NA	NA
AZY46697.1|3231466_3232417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46698.1|3232861_3233173_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY46699.1|3233172_3233703_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46700.1|3233865_3234816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46701.1|3235105_3235570_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY46702.1|3235584_3237090_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY46703.1|3237343_3238951_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY46704.1|3239006_3239912_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY46705.1|3240352_3241303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46706.1|3241401_3242352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46707.1|3242433_3243015_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY47602.1|3243439_3243745_+	RND transporter	NA	NA	NA	NA	NA
AZY46708.1|3243758_3245093_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY46709.1|3245114_3245654_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY46710.1|3245801_3246266_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY46711.1|3246408_3247524_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY46712.1|3247800_3248304_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY46713.1|3248441_3248642_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46714.1|3248632_3249355_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY46715.1|3249351_3250248_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY46716.1|3250244_3251180_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY47603.1|3251185_3251809_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY46717.1|3251799_3252768_+	nickel transporter	NA	NA	NA	NA	NA
AZY46718.1|3252816_3254958_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY46719.1|3254970_3255951_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY46720.1|3255965_3256658_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY46721.1|3256684_3257596_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY46722.1|3257638_3258529_-	acyltransferase	NA	NA	NA	NA	NA
AZY46723.1|3258525_3259380_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY46724.1|3259528_3260827_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY46725.1|3260937_3261189_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY46726.1|3261268_3262309_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY46727.1|3262588_3264007_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY46728.1|3264077_3264413_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY46729.1|3264412_3265255_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY46730.1|3265353_3266304_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	3278133	3329012	4101146	transposase,protease,tRNA,integrase	Planktothrix_phage(33.33%)	40	3311808:3311826	3331696:3331714
AZY46738.1|3278133_3279084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY47606.1|3279396_3280875_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY46739.1|3280881_3281991_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY46740.1|3282002_3282683_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY46741.1|3282704_3283460_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY47607.1|3283595_3284480_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY46742.1|3284567_3285149_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46743.1|3285241_3285364_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46744.1|3285409_3285709_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY47608.1|3285860_3286286_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46745.1|3288492_3288996_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY46746.1|3289011_3289962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46747.1|3289948_3290146_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46748.1|3290489_3291263_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46749.1|3291395_3292406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY46750.1|3292557_3294213_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY46751.1|3294267_3294609_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY46752.1|3294622_3296062_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY46753.1|3296194_3297010_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46754.1|3297028_3297217_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46755.1|3297203_3298154_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46756.1|3299541_3300489_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46757.1|3300715_3301456_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46758.1|3301541_3302492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46759.1|3303933_3305505_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY46760.1|3305837_3307691_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46761.1|3307735_3310300_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY46762.1|3310718_3311669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3311808:3311826	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY46763.1|3314534_3315029_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY46764.1|3315045_3315996_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46765.1|3315982_3316183_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46766.1|3316179_3317391_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY46767.1|3317406_3320358_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY46768.1|3320359_3323479_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY47609.1|3323475_3323616_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY46769.1|3323626_3324673_-	Fic family protein	NA	NA	NA	NA	NA
AZY46770.1|3325014_3326142_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY46771.1|3326421_3327513_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY46772.1|3327585_3328368_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY46773.1|3328364_3329012_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3331696:3331714	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 27
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	3377899	3431640	4101146	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY46810.1|3377899_3378850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46811.1|3379254_3379899_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY46812.1|3379923_3380508_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY46813.1|3380608_3381226_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY46814.1|3381228_3382944_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY46815.1|3382940_3383249_-	urease subunit beta	NA	NA	NA	NA	NA
AZY46816.1|3383265_3383901_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY46817.1|3383927_3384230_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY46818.1|3384330_3385185_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY46819.1|3385766_3386039_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY46820.1|3386456_3386864_-	GFA family protein	NA	NA	NA	NA	NA
AZY46821.1|3387233_3388028_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46822.1|3388128_3389364_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY46823.1|3389432_3390449_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY46824.1|3390445_3391837_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY46825.1|3391833_3393030_+	MFS transporter	NA	NA	NA	NA	NA
AZY46826.1|3393026_3394565_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY46827.1|3394561_3395821_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46828.1|3397761_3398712_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46829.1|3399478_3400573_-	CoA transferase	NA	NA	NA	NA	NA
AZY46830.1|3400565_3401900_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY46831.1|3401853_3402537_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46832.1|3402562_3403726_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY46833.1|3403722_3404724_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY46834.1|3404723_3405596_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY46835.1|3405592_3406342_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY46836.1|3406338_3407130_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY46837.1|3407126_3408266_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46838.1|3408574_3409327_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY46839.1|3409360_3410143_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY46840.1|3410146_3410536_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY46841.1|3411675_3412539_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY46842.1|3412574_3413663_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46843.1|3413659_3414610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46844.1|3414596_3414965_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46845.1|3414963_3417942_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46846.1|3418868_3419747_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY46847.1|3421695_3422646_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46848.1|3422642_3423110_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY46849.1|3423152_3423923_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY46850.1|3423943_3424744_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY46851.1|3424754_3426164_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY46852.1|3426258_3427044_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY46853.1|3427283_3428300_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY46854.1|3428407_3428800_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY46855.1|3428937_3429618_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY46856.1|3429622_3430621_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY46857.1|3430689_3431640_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	3437795	3497095	4101146	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY46861.1|3437795_3439559_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY46862.1|3439670_3440549_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY46863.1|3440661_3441477_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY46864.1|3441480_3441732_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY46865.1|3441816_3442833_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY46866.1|3443163_3443385_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46867.1|3445745_3446663_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY46868.1|3447160_3448369_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46869.1|3448448_3450020_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY46870.1|3450137_3451073_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY46871.1|3451261_3452206_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY46872.1|3452274_3452490_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46873.1|3452773_3458491_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY46874.1|3458496_3459624_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY46875.1|3459679_3460306_+	aminotransferase	NA	NA	NA	NA	NA
AZY46876.1|3460577_3461594_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY46877.1|3461689_3462400_-	oxidoreductase	NA	NA	NA	NA	NA
AZY47612.1|3462396_3463386_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY47613.1|3463517_3465113_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY46878.1|3465115_3465853_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46879.1|3466008_3466881_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY46880.1|3467149_3468370_+	MFS transporter	NA	NA	NA	NA	NA
AZY46881.1|3468366_3469026_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY46882.1|3469097_3469730_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY46883.1|3469759_3470278_+	flavin reductase	NA	NA	NA	NA	NA
AZY46884.1|3470288_3471398_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY46885.1|3471444_3472299_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY46886.1|3472300_3473203_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46887.1|3474425_3475376_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46888.1|3477132_3478122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46889.1|3478297_3479086_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY46890.1|3479082_3480114_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY46891.1|3480132_3480696_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY46892.1|3480751_3482272_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY46893.1|3482535_3483240_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY46894.1|3483247_3483985_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY46895.1|3484090_3484465_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY46896.1|3484507_3485797_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46897.1|3485793_3486963_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY46898.1|3486959_3487799_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY46899.1|3487858_3488794_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY46900.1|3488806_3489757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46901.1|3489855_3490818_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY46902.1|3490849_3491209_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY46903.1|3491333_3492236_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY46904.1|3492237_3494010_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY46905.1|3494044_3494821_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY46906.1|3496144_3497095_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025480	Bordetella pertussis strain E087 chromosome, complete genome	4101146	3512033	3570106	4101146	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY46918.1|3512033_3512984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46919.1|3513112_3514246_-	peptidase	NA	NA	NA	NA	NA
AZY46920.1|3514289_3515195_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY46921.1|3515197_3516898_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY46922.1|3516894_3517815_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46923.1|3517822_3518800_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY46924.1|3518858_3519893_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY46925.1|3521867_3522104_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46926.1|3522230_3523094_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY46927.1|3523182_3524004_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY46928.1|3524083_3524821_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY46929.1|3524817_3525810_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY46930.1|3525923_3526586_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46931.1|3526630_3527779_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY46932.1|3530102_3531053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46933.1|3531393_3532344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46934.1|3532442_3533393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46935.1|3533689_3534187_+	hypothetical protein	NA	NA	NA	NA	NA
AZY46936.1|3534229_3536005_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY47616.1|3536051_3536879_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY46937.1|3536885_3537620_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY46938.1|3538789_3539584_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY46939.1|3539873_3540464_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY46940.1|3540497_3541826_-	amidase	NA	NA	NA	NA	NA
AZY46941.1|3541900_3543046_-	transporter	NA	NA	NA	NA	NA
AZY46942.1|3543157_3544156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46943.1|3544118_3544553_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY46944.1|3546069_3546954_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY46945.1|3546950_3548156_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY46946.1|3548152_3549013_-	endonuclease	NA	NA	NA	NA	NA
AZY46947.1|3549125_3550916_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY46948.1|3550956_3551622_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY46949.1|3551622_3551931_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY47617.1|3552096_3553383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY46950.1|3554816_3555767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY46951.1|3557718_3558933_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY46952.1|3559038_3560028_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY46953.1|3560024_3560633_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY46954.1|3560645_3561275_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY46955.1|3561271_3561892_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY46956.1|3561923_3562715_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY46957.1|3563557_3564022_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY46958.1|3564040_3564967_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY46959.1|3565020_3566307_-	cytochrome c	NA	NA	NA	NA	NA
AZY46960.1|3567237_3568110_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY46961.1|3568106_3569057_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY46962.1|3569155_3570106_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
