The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	0	122073	4107433	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY32603.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY32604.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY32605.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY32606.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY32607.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY32608.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY32609.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY32610.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY32611.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY32612.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY32613.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY32614.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY32615.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY32616.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY36001.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY32617.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32618.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY32619.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY32620.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32621.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY32622.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32623.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY32624.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY36002.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32625.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY32626.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY32627.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32628.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY32629.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY32630.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY32631.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY32632.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY32633.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY32634.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY32635.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY32636.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY32637.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32638.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32639.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY32640.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32641.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY32642.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY32643.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32644.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY32645.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY32646.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY32647.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY32648.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY32649.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY32650.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32651.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY32652.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY32653.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32654.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32655.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY32656.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY32657.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY32658.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY32659.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32660.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32661.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY32662.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY32663.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY32664.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY32665.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36003.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32666.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY32667.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36004.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32668.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY32669.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY32670.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY32671.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY32672.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY32673.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY32674.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY32675.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY32676.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY32677.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY32678.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY32679.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY32680.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32681.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY32682.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY32683.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY32684.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY32685.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32686.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY32687.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY32688.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY32689.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY32690.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY32691.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY32692.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY32693.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY32694.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY32695.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32696.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY32697.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY32698.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY32699.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY36005.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY32700.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36006.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY32701.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY32702.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY32703.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY32704.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY32705.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY32706.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	164892	225403	4107433	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY32737.1|164892_165843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32738.1|167286_168189_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32739.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
AZY32740.1|169126_170509_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY32741.1|170542_171172_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY32742.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY32743.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36012.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
AZY32744.1|174300_175251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32745.1|176366_176894_+	lipoprotein	NA	NA	NA	NA	NA
AZY32746.1|176985_177801_+	lipoprotein	NA	NA	NA	NA	NA
AZY32747.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY32748.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY32749.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32750.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY32751.1|182424_184329_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY32752.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY32753.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY32754.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
AZY32755.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY36013.1|189529_189976_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY32756.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32757.1|190754_193025_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY32758.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY32759.1|194404_195355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32760.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY32761.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY32762.1|197377_198478_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY32763.1|198559_198934_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY32764.1|198993_201858_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY32765.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32766.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
AZY32767.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32768.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32769.1|206741_207065_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY32770.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
AZY32771.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY32772.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
AZY32773.1|209362_209638_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY32774.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY32775.1|210338_211025_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY36014.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32776.1|212056_212782_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY32777.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY32778.1|214274_215207_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY32779.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY32780.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY32781.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY32782.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY32783.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY32784.1|224452_225403_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	233335	286923	4107433	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY32792.1|233335_234286_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32793.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32794.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32795.1|236368_237166_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY32796.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY32797.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32798.1|240334_241378_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY32799.1|241548_243651_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32800.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32801.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY32802.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY32803.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY32804.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY32805.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY32806.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY32807.1|251622_253512_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY32808.1|253598_254237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36015.1|254379_255624_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY32809.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY32810.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY32811.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
AZY32812.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY32813.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32814.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY32815.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
AZY32816.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32817.1|265572_266523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32818.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32819.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY32820.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY32821.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY32822.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY32823.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY32824.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY32825.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY32826.1|277139_278090_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32827.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32828.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY32829.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
AZY32830.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY32831.1|279654_280266_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY32832.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
AZY32833.1|281298_282681_-	cytochrome b	NA	NA	NA	NA	NA
AZY32834.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY32835.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY32836.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY36016.1|284839_285976_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY32837.1|285972_286923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	390856	448365	4107433	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY32936.1|390856_391807_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32937.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
AZY32938.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY32939.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
AZY32940.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32941.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
AZY32942.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32943.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36022.1|400017_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY32944.1|401156_402140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32945.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32946.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY32947.1|403583_404825_-	CoA transferase	NA	NA	NA	NA	NA
AZY32948.1|404929_406636_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY32949.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32950.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY32951.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32952.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36023.1|411329_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32953.1|412385_413336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32954.1|413424_414339_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY32955.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
AZY32956.1|415084_416008_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY32957.1|416013_416469_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32958.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY36024.1|417488_417797_+	GtrA family protein	NA	NA	NA	NA	NA
AZY32959.1|417756_419376_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY32960.1|419372_420431_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY32961.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY32962.1|421147_422125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32963.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY32964.1|423522_425034_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36025.1|425049_426363_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY32965.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
AZY32966.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY32967.1|430321_431272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY32968.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY32969.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
AZY32970.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY32971.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY32972.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY32973.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY32974.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
AZY32975.1|439209_439995_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY32976.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY32977.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY32978.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY32979.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY32980.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY32981.1|447414_448365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	619752	720216	4107433	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY33132.1|619752_620703_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33133.1|621401_621785_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33134.1|621842_622445_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY36031.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
AZY33135.1|622997_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33136.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY33137.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
AZY33138.1|626038_627088_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY33139.1|627235_627814_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY33140.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY33141.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY33142.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33143.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY33144.1|635741_636692_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33145.1|636790_637591_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33146.1|637652_638036_+	thioredoxin	NA	NA	NA	NA	NA
AZY33147.1|638047_639481_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY33148.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY36032.1|640019_640688_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY33149.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY33150.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY33151.1|642153_642576_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY33152.1|642592_643693_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY33153.1|643789_645307_-	peptidase	NA	NA	NA	NA	NA
AZY33154.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY33155.1|646243_647125_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY33156.1|647206_648301_-	porin	NA	NA	NA	NA	NA
AZY33157.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36033.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33158.1|650644_651004_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33159.1|651385_652423_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33160.1|652739_654080_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY33161.1|654089_654542_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33162.1|654638_655820_+	monooxygenase	NA	NA	NA	NA	NA
AZY33163.1|655879_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY33164.1|656951_657191_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY33165.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY33166.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY33167.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY33168.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY33169.1|661054_662023_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY33170.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY33171.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY33172.1|665120_666071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33173.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY33174.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY33175.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
AZY33176.1|668788_669544_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36034.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY33177.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY33178.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY33179.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY33180.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY33181.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY33182.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY33183.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33184.1|677290_678241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33185.1|678492_678705_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36035.1|678770_679382_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY33186.1|679861_680182_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33187.1|680174_680873_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33188.1|680887_681109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33189.1|681126_682077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36036.1|682752_683202_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY33190.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY33191.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY36037.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY33192.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY33193.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY33194.1|688372_689323_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33195.1|689340_689988_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY33196.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33197.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY33198.1|690795_690996_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33199.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY33200.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY33201.1|691782_692205_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33202.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY33203.1|692967_693486_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY33204.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY33205.1|693842_694133_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY33206.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY33207.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33208.1|697207_697741_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY33209.1|697737_698127_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY33210.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY33211.1|702080_702497_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33212.1|702715_702979_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY33213.1|702978_703791_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33214.1|703795_704038_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33215.1|704016_704568_+	lysozyme	NA	NA	NA	NA	NA
AZY33216.1|704549_705083_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY33217.1|705079_705361_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33218.1|705703_705904_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33219.1|705910_706582_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY33220.1|706937_707624_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY33221.1|707604_708177_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY33222.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY33223.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY33224.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
AZY33225.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
AZY33226.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY33227.1|712622_713939_+	protein TolB	NA	NA	NA	NA	NA
AZY33228.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY33229.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY33230.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY33231.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY33232.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33233.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33234.1|719060_719279_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33235.1|719265_720216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	747141	820303	4107433	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY33256.1|747141_748092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33257.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY33258.1|749877_751143_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY33259.1|751300_752251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33260.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY36039.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY33261.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
AZY33262.1|756767_757292_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY33263.1|757251_758202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33264.1|758423_760619_-	DNA methylase	NA	NA	NA	NA	NA
AZY33265.1|760691_761099_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY33266.1|761221_762172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33267.1|762287_762731_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY33268.1|762793_763588_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY33269.1|763753_764890_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY33270.1|764960_766094_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY33271.1|766243_766504_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY33272.1|766537_766849_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY33273.1|767273_768422_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY33274.1|768536_769502_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY33275.1|769770_770637_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33276.1|770767_772816_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY33277.1|772833_774831_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY33278.1|774865_776203_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY33279.1|776465_778319_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33280.1|778373_779855_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY33281.1|779870_780458_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY36040.1|780540_780720_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33282.1|780906_786027_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY33283.1|786104_788243_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY33284.1|788239_789562_+	protein CyaD	NA	NA	NA	NA	NA
AZY33285.1|789563_790988_+	protein CyaE	NA	NA	NA	NA	NA
AZY33286.1|791078_791987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33287.1|792051_792966_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY33288.1|793803_794487_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY33289.1|794503_795247_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY33290.1|795276_796137_+	aminotransferase	NA	NA	NA	NA	NA
AZY33291.1|796144_796711_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33292.1|796799_797756_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33293.1|797800_798553_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33294.1|798549_800295_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY33295.1|800379_801114_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33296.1|801430_802453_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY33297.1|802468_803191_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33298.1|803335_804343_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY33299.1|804383_805916_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY33300.1|805912_807031_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY33301.1|807027_807810_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY33302.1|807821_808685_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY36041.1|808703_809801_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33303.1|809869_810796_-	VOC family protein	NA	NA	NA	NA	NA
AZY33304.1|810830_812525_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY33305.1|812724_813660_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY33306.1|813765_814716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33307.1|814814_815471_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY33308.1|815618_818327_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY33309.1|818336_819356_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY33310.1|819352_820303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	853050	902314	4107433	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZY33339.1|853050_854001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36042.1|853973_854573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33340.1|854574_855009_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY33341.1|855005_855440_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33342.1|855423_856227_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY33343.1|856243_857059_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY33344.1|857055_857871_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY33345.1|858017_858719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33346.1|858746_860705_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY33347.1|860787_861738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33348.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY33349.1|862750_863857_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY33350.1|863869_866983_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY33351.1|866979_868473_+	RND transporter	NA	NA	NA	NA	NA
AZY33352.1|868487_869159_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY33353.1|869202_869697_-	azurin	NA	NA	NA	NA	NA
AZY33354.1|869837_870485_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY36043.1|870588_872637_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY33355.1|872633_874646_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY33356.1|874671_876006_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33357.1|876114_877107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33358.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY33359.1|879282_880254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33360.1|880382_881384_-	peptidase M14	NA	NA	NA	NA	NA
AZY33361.1|881417_882659_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY33362.1|882739_883663_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY33363.1|883740_884565_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY36044.1|884761_885778_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY33364.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33365.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY33366.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33367.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY33368.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33369.1|893412_895644_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY33370.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY33371.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY33372.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY33373.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY33374.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY33375.1|901363_902314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	911926	976866	4107433	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY33384.1|911926_912877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33385.1|912873_914724_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY33386.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY33387.1|915851_916004_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33388.1|916112_916280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33389.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY33390.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY33391.1|917984_919286_-	phospholipase	NA	NA	NA	NA	NA
AZY33392.1|921430_924319_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY33393.1|924542_925895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY33394.1|925923_926445_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY33395.1|926441_927896_+	carboxylase	NA	NA	NA	NA	NA
AZY33396.1|927930_928179_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33397.1|928284_929160_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33398.1|929185_930241_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33399.1|930253_931045_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33400.1|931077_932448_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY33401.1|933624_934575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33402.1|934627_934849_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33403.1|935008_935221_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33404.1|935340_936459_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY33405.1|936555_936771_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33406.1|936964_937216_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33407.1|937328_938279_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33408.1|938275_938659_-	ferredoxin	NA	NA	NA	NA	NA
AZY33409.1|938713_940531_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY36046.1|940677_941505_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY33410.1|941550_942531_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY33411.1|942527_942740_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33412.1|942736_943918_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY33413.1|944081_944816_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY33414.1|944817_947430_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY33415.1|947565_949479_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY33416.1|950094_950505_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY33417.1|950602_951688_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY33418.1|951786_952737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33419.1|952733_953708_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33420.1|953832_954744_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY36047.1|955020_955413_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY33421.1|955542_956493_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33422.1|956522_956705_-	addiction module toxin, HicA family	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY33423.1|956743_957001_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33424.1|957477_958659_-	MFS transporter	NA	NA	NA	NA	NA
AZY33425.1|958874_959552_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY33426.1|959548_960322_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY33427.1|960399_960981_-	OmpA family protein	NA	NA	NA	NA	NA
AZY33428.1|961351_964033_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY33429.1|964032_965166_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY33430.1|965158_966244_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY33431.1|966330_967230_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY33432.1|967226_968555_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY33433.1|968569_969241_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY33434.1|969413_971144_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY33435.1|971145_971505_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY33436.1|971696_972011_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY33437.1|972053_973274_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY33438.1|973270_974212_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY33439.1|974208_975198_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY33440.1|975232_975817_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY33441.1|975915_976866_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	996266	1059417	4107433	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY33456.1|996266_997217_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33457.1|997321_998371_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY36049.1|998508_999525_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY33458.1|1001033_1001606_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY33459.1|1001665_1002397_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY36050.1|1002448_1003366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33460.1|1004173_1007353_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY33461.1|1007349_1008732_+	multidrug transporter	NA	NA	NA	NA	NA
AZY33462.1|1008801_1009053_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY33463.1|1009198_1009849_-	SCO family protein	NA	NA	NA	NA	NA
AZY33464.1|1009999_1012114_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY33465.1|1012189_1013041_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY33466.1|1013037_1013664_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY33467.1|1013660_1015415_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY33468.1|1015707_1018413_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY33469.1|1018425_1020087_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY33470.1|1020099_1021890_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY33471.1|1022111_1023287_-	flagellin FliC	NA	NA	NA	NA	NA
AZY33472.1|1023329_1024280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33473.1|1024378_1025119_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY33474.1|1025313_1027350_+	transketolase	NA	NA	NA	NA	NA
AZY33475.1|1027367_1028378_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY33476.1|1028495_1029689_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY33477.1|1029718_1030492_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY33478.1|1030488_1031679_-	acetate kinase	NA	NA	NA	NA	NA
AZY33479.1|1031704_1032643_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY36051.1|1032639_1034988_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY33480.1|1035142_1035850_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY33481.1|1035887_1037021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33482.1|1037297_1037846_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY33483.1|1037864_1038350_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY33484.1|1038527_1039466_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY33485.1|1039468_1039786_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33486.1|1039831_1040776_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33487.1|1042456_1043107_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY33488.1|1043160_1043496_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33489.1|1043492_1044353_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY33490.1|1044369_1044651_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33491.1|1044724_1044988_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY33492.1|1045231_1046182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33493.1|1046480_1047218_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY33494.1|1047653_1047977_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY33495.1|1048011_1048572_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY33496.1|1048692_1049568_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY33497.1|1049580_1050528_+	motility protein MotB	NA	NA	NA	NA	NA
AZY33498.1|1050629_1050923_+	response regulator	NA	NA	NA	NA	NA
AZY33499.1|1050949_1053007_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY33500.1|1053021_1053522_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY33501.1|1053595_1055302_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY33502.1|1056165_1057218_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY33503.1|1057270_1057660_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY33504.1|1057668_1058301_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY36052.1|1058400_1059417_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1065401	1125464	4107433	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AZY33509.1|1065401_1066829_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY36054.1|1067766_1068783_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY33510.1|1069115_1070051_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY33511.1|1070100_1071981_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY33512.1|1072047_1072392_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY33513.1|1072536_1073673_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY33514.1|1073669_1074743_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY33515.1|1074900_1076337_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY36055.1|1076427_1077069_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY36056.1|1077404_1078421_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY33516.1|1080297_1080477_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36057.1|1080463_1081414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36058.1|1082616_1084038_-	siroheme synthase	NA	NA	NA	NA	NA
AZY33517.1|1084301_1085018_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33518.1|1085102_1085420_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY33519.1|1085460_1085874_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY33520.1|1085875_1086235_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33521.1|1086277_1087822_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY33522.1|1087905_1088736_+	transglycosylase	NA	NA	NA	NA	NA
AZY33523.1|1088770_1089925_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY33524.1|1089967_1090840_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33525.1|1090956_1093245_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY33526.1|1094451_1094916_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY33527.1|1094942_1095893_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36059.1|1096260_1097037_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY33528.1|1097081_1097939_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY33529.1|1097960_1098977_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY33530.1|1099111_1100152_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY33531.1|1100346_1102428_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY33532.1|1102663_1104157_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY33533.1|1104387_1105182_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY33534.1|1105402_1106761_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY33535.1|1106757_1107600_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY33536.1|1107618_1109505_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY33537.1|1109742_1110375_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY33538.1|1110393_1110996_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33539.1|1111147_1112098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33540.1|1112900_1113701_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33541.1|1113744_1114731_-	homoserine kinase	NA	NA	NA	NA	NA
AZY33542.1|1114870_1115884_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY33543.1|1115880_1116831_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33544.1|1116943_1117402_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY33545.1|1117438_1118752_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33546.1|1118769_1119141_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY33547.1|1119137_1120601_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY33548.1|1120693_1121470_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY33549.1|1121451_1124331_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY33550.1|1124513_1125464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1156530	1218803	4107433	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
AZY33572.1|1156530_1157481_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY33573.1|1157579_1158212_-	fimbrial protein	NA	NA	NA	NA	NA
AZY33574.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY33575.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY33576.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY33577.1|1166308_1167259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33578.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY33579.1|1170499_1171714_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY33580.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY33581.1|1173411_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZY33582.1|1174572_1175331_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33583.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33584.1|1176317_1177268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33585.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33586.1|1178435_1179158_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY33587.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZY33588.1|1182072_1184448_-	protein tex	NA	NA	NA	NA	NA
AZY33589.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZY33590.1|1186749_1187550_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZY33591.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZY33592.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZY33593.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZY33594.1|1191169_1191907_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY33595.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZY33596.1|1192757_1193294_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33597.1|1193296_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZY33598.1|1193656_1194502_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZY33599.1|1194540_1195920_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZY33600.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY33601.1|1196977_1197928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33602.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
AZY33603.1|1198442_1199297_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZY33604.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33605.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZY36061.1|1201533_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33606.1|1202530_1203310_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY33607.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
AZY33608.1|1205319_1207017_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZY33609.1|1207045_1207168_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36062.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZY33610.1|1208511_1209258_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33611.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33612.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33613.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33614.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZY33615.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33616.1|1215186_1215540_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33617.1|1215623_1216613_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY33618.1|1216815_1217766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33619.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1270677	1327888	4107433	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY33657.1|1270677_1271628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33658.1|1275374_1275986_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY33659.1|1276208_1277669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY33660.1|1277765_1279358_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY33661.1|1279344_1279623_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33662.1|1279681_1279969_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY33663.1|1279970_1281311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY33664.1|1281406_1282096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33665.1|1282108_1283539_+	MFS transporter	NA	NA	NA	NA	NA
AZY33666.1|1285263_1286085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33667.1|1286095_1287667_+	amidohydrolase	NA	NA	NA	NA	NA
AZY33668.1|1287695_1288673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY33669.1|1288699_1289503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY33670.1|1289499_1290294_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY33671.1|1290301_1291537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY33672.1|1291529_1291964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY33673.1|1292713_1293664_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33674.1|1294285_1296013_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY33675.1|1296124_1297483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY33676.1|1297603_1297789_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33677.1|1297775_1298726_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33678.1|1298766_1299837_+	FUSC family protein	NA	NA	NA	NA	NA
AZY36064.1|1299859_1300738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY33679.1|1300909_1301881_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY33680.1|1302043_1302886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33681.1|1303047_1303728_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY33682.1|1303721_1304891_+	amine oxidase	NA	NA	NA	NA	NA
AZY33683.1|1304887_1305919_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY33684.1|1305962_1307204_+	MFS transporter	NA	NA	NA	NA	NA
AZY33685.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY33686.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY33687.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
AZY33688.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY33689.1|1311054_1312059_+	peptidase M20	NA	NA	NA	NA	NA
AZY33690.1|1312095_1313610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY33691.1|1313613_1314573_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY33692.1|1314601_1315405_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY33693.1|1315406_1317041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY33694.1|1317124_1318186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY33695.1|1318384_1318654_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33696.1|1318657_1319182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY33697.1|1319597_1320548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33698.1|1320544_1321615_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY33699.1|1321687_1322326_+	DedA family protein	NA	NA	NA	NA	NA
AZY33700.1|1322620_1322848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY33701.1|1322970_1323684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY33702.1|1323928_1324879_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33703.1|1324982_1325264_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33704.1|1325378_1326827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY33705.1|1326937_1327888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1573160	1644314	4107433	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY33928.1|1573160_1574111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33929.1|1574132_1575353_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY33930.1|1575538_1576951_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY33931.1|1577014_1578082_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY33932.1|1578078_1579569_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY36076.1|1579578_1580523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33933.1|1580682_1581381_+	pirin family protein	NA	NA	NA	NA	NA
AZY33934.1|1581458_1582364_+	pirin family protein	NA	NA	NA	NA	NA
AZY33935.1|1582383_1583334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33936.1|1583432_1584227_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY33937.1|1584231_1585902_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY33938.1|1586025_1587075_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY33939.1|1587396_1588173_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY33940.1|1588237_1589140_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33941.1|1590433_1591237_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY33942.1|1593930_1594317_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY33943.1|1594332_1596423_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY33944.1|1596474_1597428_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY36077.1|1597442_1598330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33945.1|1598467_1599994_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY36078.1|1600092_1600593_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY33946.1|1600916_1602872_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY33947.1|1603039_1605124_-	hypothetical protein	NA	NA	NA	NA	NA
AZY33948.1|1605150_1605936_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY33949.1|1606791_1607562_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY33950.1|1607561_1608302_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY33951.1|1608343_1609513_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY33952.1|1609544_1611629_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY33953.1|1611625_1612516_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY33954.1|1612512_1613610_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY33955.1|1613632_1614922_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY33956.1|1614933_1615959_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY33957.1|1615955_1618013_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY33958.1|1618026_1619202_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY33959.1|1619283_1620234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33960.1|1620292_1621066_+	oxidoreductase	NA	NA	NA	NA	NA
AZY33961.1|1621058_1622615_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY33962.1|1622611_1623562_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33963.1|1624888_1625491_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33964.1|1625730_1626432_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY33965.1|1626425_1627208_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY33966.1|1627392_1628343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33967.1|1628441_1629179_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY33968.1|1629368_1630127_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33969.1|1630173_1631163_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33970.1|1631340_1632309_-	transporter	NA	NA	NA	NA	NA
AZY33971.1|1633848_1634817_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY33972.1|1634825_1635767_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY33973.1|1636240_1637251_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36079.1|1637241_1638756_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY33974.1|1638752_1640099_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36080.1|1640101_1641136_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY33975.1|1641185_1642811_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY33976.1|1643363_1644314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1665105	1726453	4107433	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY33991.1|1665105_1666056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36085.1|1666349_1667072_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY33992.1|1667510_1668698_-	MFS transporter	NA	NA	NA	NA	NA
AZY33993.1|1668701_1669082_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33994.1|1670801_1671773_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY33995.1|1671786_1672500_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY33996.1|1672504_1673422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY33997.1|1673528_1673825_+	hypothetical protein	NA	NA	NA	NA	NA
AZY33998.1|1673923_1674874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY33999.1|1676032_1678966_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY34000.1|1678965_1679310_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY34001.1|1679306_1680935_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY34002.1|1680931_1681411_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY34003.1|1681407_1681692_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY34004.1|1681688_1682015_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY34005.1|1682170_1683121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34006.1|1683164_1683707_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34007.1|1683804_1684653_+	hydrolase	NA	NA	NA	NA	NA
AZY34008.1|1684645_1685152_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY34009.1|1685148_1686150_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY34010.1|1686162_1686957_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY34011.1|1687005_1688907_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY34012.1|1688903_1689527_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34013.1|1689653_1690778_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34014.1|1691095_1692763_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY34015.1|1692918_1693695_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY34016.1|1693779_1694778_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34017.1|1694774_1695548_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY34018.1|1696532_1697483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34019.1|1697506_1697971_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY34020.1|1698117_1699326_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY34021.1|1699336_1699807_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY34022.1|1699925_1701215_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY34023.1|1703955_1704906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34024.1|1705004_1706021_-	folate-binding protein	NA	NA	NA	NA	NA
AZY34025.1|1706187_1707234_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY34026.1|1707230_1707857_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY34027.1|1707853_1708906_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY34028.1|1708955_1709726_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY34029.1|1709776_1710613_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34030.1|1710808_1711549_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34031.1|1711623_1712367_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34032.1|1713028_1713802_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY34033.1|1714939_1716229_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY34034.1|1717839_1719087_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY34035.1|1719096_1720806_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY34036.1|1720802_1721741_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY34037.1|1721737_1723021_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY34038.1|1723024_1723507_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY34039.1|1723507_1724494_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34040.1|1724666_1725386_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34041.1|1725502_1726453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1832641	1891911	4107433	protease,transposase,tRNA	Klosneuvirus(40.0%)	49	NA	NA
AZY34118.1|1832641_1833592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34119.1|1833716_1834526_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY34120.1|1834726_1835677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34121.1|1836950_1838168_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY34122.1|1839224_1840127_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34123.1|1840203_1841076_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY34124.1|1841206_1841575_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY34125.1|1841632_1842679_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY34126.1|1842874_1844131_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY34127.1|1844135_1845473_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34128.1|1845622_1846579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34129.1|1848051_1848402_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34130.1|1848449_1850024_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34131.1|1850076_1851021_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY34132.1|1851038_1851869_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY34133.1|1851861_1853496_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY34134.1|1853492_1854848_+	amidase	NA	NA	NA	NA	NA
AZY34135.1|1855754_1857332_+	lipoprotein	NA	NA	NA	NA	NA
AZY34136.1|1857335_1858610_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36091.1|1858707_1859082_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34137.1|1860797_1861931_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZY34138.1|1861968_1862574_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY34139.1|1862570_1863389_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34140.1|1863460_1866085_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY34141.1|1866071_1866326_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY34142.1|1866392_1866974_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34143.1|1867277_1867538_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY34144.1|1867703_1868327_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY34145.1|1868326_1869100_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY34146.1|1869096_1870305_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY34147.1|1870330_1870804_-	RidA family protein	NA	NA	NA	NA	NA
AZY34148.1|1870877_1871828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34149.1|1871926_1872877_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34150.1|1872975_1874325_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY34151.1|1875090_1875846_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY34152.1|1875938_1878821_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY34153.1|1879143_1879569_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY34154.1|1879596_1880745_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY34155.1|1880741_1881248_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY34156.1|1881254_1882550_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY34157.1|1882590_1883895_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY34158.1|1883896_1884535_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34159.1|1884537_1885698_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY34160.1|1885724_1887080_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY34161.1|1887083_1888154_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY34162.1|1888292_1888529_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY34163.1|1888616_1889723_+	GTPase HflX	NA	NA	NA	NA	NA
AZY34164.1|1889688_1890993_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY34165.1|1891011_1891911_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1902151	1945425	4107433	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AZY34173.1|1902151_1903102_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34174.1|1903200_1904151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34175.1|1904137_1904338_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34176.1|1904350_1905436_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY34177.1|1905451_1906213_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY34178.1|1906209_1907133_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY34179.1|1907231_1907756_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY34180.1|1907764_1908508_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY34181.1|1908603_1908843_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34182.1|1908856_1909009_-	lipoprotein	NA	NA	NA	NA	NA
AZY34183.1|1909094_1910585_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY34184.1|1910676_1911615_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY34185.1|1911611_1911788_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY34186.1|1911790_1912453_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY36093.1|1914074_1914218_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY34187.1|1914214_1915189_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34188.1|1915355_1916306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34189.1|1916302_1917577_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY34190.1|1917674_1918874_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY34191.1|1918870_1919524_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY34192.1|1919520_1920957_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY34193.1|1920944_1921304_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY34194.1|1922276_1923227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34195.1|1923223_1925089_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY36094.1|1925346_1926867_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY34196.1|1926954_1927605_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY34197.1|1928553_1929849_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY34198.1|1929870_1930755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36095.1|1930853_1931729_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY34199.1|1931718_1932075_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY34200.1|1932148_1933180_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY34201.1|1933309_1933489_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY34202.1|1933586_1934111_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY34203.1|1934121_1934958_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY34204.1|1935070_1935442_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY34205.1|1935438_1935990_+	ATPase	NA	NA	NA	NA	NA
AZY34206.1|1936005_1937697_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY34207.1|1937745_1938426_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34208.1|1938673_1939138_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34209.1|1939307_1940237_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY34210.1|1940249_1940897_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34211.1|1940970_1942788_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY34212.1|1942871_1943822_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34213.1|1944474_1945425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	1975198	2039567	4107433	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZY34241.1|1975198_1976149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34242.1|1976135_1976327_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34243.1|1976370_1977321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34244.1|1977419_1978385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34245.1|1978522_1979422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34246.1|1982016_1983504_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34247.1|1983514_1984711_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY34248.1|1984783_1986103_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY34249.1|1986099_1986975_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY34250.1|1987005_1988175_-	CoA transferase	NA	NA	NA	NA	NA
AZY34251.1|1988171_1988486_-	ferredoxin	NA	NA	NA	NA	NA
AZY34252.1|1988507_1989230_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY34253.1|1989229_1990048_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY34254.1|1990052_1990580_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY34255.1|1990585_1991851_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY34256.1|1992200_1993340_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34257.1|1993417_1994290_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY34258.1|1995160_1996111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34259.1|1996070_1996706_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34260.1|1997065_1998388_-	isocitrate lyase	NA	NA	NA	NA	NA
AZY34261.1|1998616_1999528_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY34262.1|2000952_2001525_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY34263.1|2001564_2003394_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZY34264.1|2003356_2004415_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY34265.1|2004452_2004914_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZY34266.1|2004998_2005745_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY34267.1|2007235_2010466_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY34268.1|2010532_2011864_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY34269.1|2012116_2012491_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY34270.1|2012593_2013772_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34271.1|2013782_2014373_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY36099.1|2014483_2015290_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY34272.1|2015315_2016110_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY34273.1|2017110_2018085_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34274.1|2018243_2018756_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY34275.1|2018912_2019884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34276.1|2021628_2022435_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY36100.1|2022431_2023568_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY34277.1|2023683_2024448_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34278.1|2024561_2025332_-	spermidine synthase	NA	NA	NA	NA	NA
AZY34279.1|2025416_2026628_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY34280.1|2026676_2027051_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY34281.1|2027151_2028414_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY34282.1|2028410_2029268_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY34283.1|2029440_2030442_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34284.1|2030893_2031844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34285.1|2033359_2034559_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY34286.1|2034927_2035164_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY34287.1|2035227_2035395_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY34288.1|2035508_2037404_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY34289.1|2037567_2038518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34290.1|2038616_2039567_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2132722	2196812	4107433	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
AZY34364.1|2132722_2133991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34365.1|2134561_2134774_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34366.1|2134791_2135523_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34367.1|2135557_2136199_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY34368.1|2136191_2136908_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY34369.1|2139072_2139849_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY34370.1|2139870_2141028_-	thiolase	NA	NA	NA	NA	NA
AZY34371.1|2141024_2141456_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34372.1|2141452_2142256_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY34373.1|2142269_2142725_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY34374.1|2142737_2143709_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34375.1|2143774_2144998_-	CoA transferase	NA	NA	NA	NA	NA
AZY34376.1|2145225_2146176_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34377.1|2146299_2148753_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY34378.1|2148941_2150246_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY34379.1|2150350_2151004_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY34380.1|2151006_2152317_-	trigger factor	NA	NA	NA	NA	NA
AZY34381.1|2152495_2153074_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY34382.1|2153185_2153386_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY34383.1|2153731_2154298_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY34384.1|2154381_2154585_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY34385.1|2154891_2155212_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34386.1|2155253_2155535_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34387.1|2155609_2156866_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY34388.1|2157248_2157578_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY34389.1|2159148_2159970_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY34390.1|2159969_2161109_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY34391.1|2161115_2162012_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY34392.1|2162008_2163934_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY34393.1|2164293_2166906_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY34394.1|2166958_2169259_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY34395.1|2169255_2170464_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY34396.1|2170725_2171100_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34397.1|2171096_2172047_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34398.1|2172145_2174140_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY34399.1|2174199_2175165_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY34400.1|2175154_2178016_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY34401.1|2178018_2178525_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY34402.1|2178629_2179838_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY34403.1|2179839_2180778_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34404.1|2180939_2181413_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY34405.1|2181409_2182360_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34406.1|2182346_2182526_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34407.1|2182470_2182911_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY34408.1|2183039_2184269_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY34409.1|2184307_2185129_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY34410.1|2185182_2186334_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY34411.1|2186425_2186914_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY34412.1|2189440_2192014_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY34413.1|2192084_2194658_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY34414.1|2194923_2195124_+	CsbD family protein	NA	NA	NA	NA	NA
AZY34415.1|2195155_2195317_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY34416.1|2195374_2195713_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY34417.1|2195861_2196812_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2476007	2534251	4107433	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZY34651.1|2476007_2476958_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34652.1|2477437_2478094_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY34653.1|2478108_2479776_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY34654.1|2479778_2480408_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34655.1|2480619_2481714_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34656.1|2481858_2482671_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY34657.1|2482674_2484378_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY34658.1|2484428_2485559_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY34659.1|2485745_2486822_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY36118.1|2486903_2487554_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY34660.1|2487568_2489002_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY34661.1|2489255_2490074_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34662.1|2490070_2490775_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY34663.1|2491674_2492790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34664.1|2492823_2493198_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34665.1|2493220_2494378_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY34666.1|2494390_2494624_-	lipoprotein	NA	NA	NA	NA	NA
AZY34667.1|2495258_2498228_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY34668.1|2498242_2498452_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY34669.1|2498603_2499233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34670.1|2499229_2501347_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY34671.1|2501343_2502024_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY34672.1|2502020_2502581_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY34673.1|2502587_2503685_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY34674.1|2503822_2504431_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY34675.1|2504427_2505720_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY34676.1|2505733_2506276_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY34677.1|2506285_2507122_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY34678.1|2507155_2508217_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY34679.1|2508258_2509311_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY34680.1|2509326_2509629_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34681.1|2509770_2510721_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34682.1|2510899_2512594_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY34683.1|2512590_2513676_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY34684.1|2513723_2514623_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34685.1|2514633_2515278_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY34686.1|2516299_2519542_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY34687.1|2519552_2520650_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY34688.1|2520912_2521896_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY34689.1|2521994_2522945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34690.1|2523043_2523994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34691.1|2524003_2524693_-	VIT family protein	NA	NA	NA	NA	NA
AZY34692.1|2524752_2525190_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY34693.1|2525235_2526129_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY34694.1|2526176_2527349_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY34695.1|2527345_2528500_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY34696.1|2528696_2529047_-	RnfH family protein	NA	NA	NA	NA	NA
AZY34697.1|2529036_2529471_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY34698.1|2529487_2530438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34699.1|2530585_2531053_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY34700.1|2531033_2532191_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY34701.1|2532256_2533183_-	paraslipin	NA	NA	NA	NA	NA
AZY34702.1|2533300_2534251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2576529	2643029	4107433	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY34741.1|2576529_2577480_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34742.1|2577849_2578422_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY34743.1|2578424_2579435_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY34744.1|2579427_2579928_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY34745.1|2579938_2580280_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY34746.1|2580291_2581083_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY34747.1|2581099_2581369_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY34748.1|2581391_2582180_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY36122.1|2582226_2583243_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY34749.1|2583459_2584902_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY34750.1|2585080_2586700_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY34751.1|2586820_2588641_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY34752.1|2588719_2590252_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY34753.1|2590285_2591932_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY34754.1|2592001_2593024_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY34755.1|2593041_2594175_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY34756.1|2594177_2594867_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY34757.1|2594866_2595652_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY34758.1|2595695_2596460_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY34759.1|2596498_2597920_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY34760.1|2597985_2598690_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY34761.1|2598737_2599157_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY34762.1|2599169_2599577_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY36123.1|2599760_2600471_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY34763.1|2600597_2600888_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY34764.1|2600905_2601388_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY34765.1|2605893_2607048_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY36124.1|2607353_2608370_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY34766.1|2608616_2609405_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34767.1|2609471_2610152_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY34768.1|2610148_2610919_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY34769.1|2611017_2611968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34770.1|2612023_2612941_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY34771.1|2612951_2614130_-	mandelate racemase	NA	NA	NA	NA	NA
AZY34772.1|2614149_2615145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34773.1|2616733_2617342_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY34774.1|2617329_2618370_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY34775.1|2618387_2619350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34776.1|2619346_2620540_-	CoA transferase	NA	NA	NA	NA	NA
AZY34777.1|2620536_2621334_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY34778.1|2621359_2622346_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY34779.1|2622364_2624404_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY36125.1|2624605_2625286_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34780.1|2625299_2626211_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY34781.1|2626207_2626786_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY34782.1|2626924_2627830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34783.1|2627837_2631257_+	nuclease	NA	NA	NA	NA	NA
AZY34784.1|2631244_2633845_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY34785.1|2634800_2635433_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34786.1|2635826_2636585_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34787.1|2636581_2637784_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY34788.1|2637971_2638922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34789.1|2639829_2640975_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY36126.1|2640994_2641717_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY34790.1|2641833_2642013_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34791.1|2642078_2643029_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2671144	2709605	4107433	transposase	Planktothrix_phage(33.33%)	40	NA	NA
AZY34806.1|2671144_2672095_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34807.1|2672193_2673144_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34808.1|2673236_2673776_+	peroxiredoxin	NA	NA	NA	NA	NA
AZY34809.1|2673882_2674227_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY34810.1|2674284_2675733_-	CoA transferase	NA	NA	NA	NA	NA
AZY34811.1|2676022_2676973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34812.1|2676969_2677305_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY34813.1|2678932_2680111_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY34814.1|2680193_2680694_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY34815.1|2680719_2681505_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY34816.1|2681516_2681981_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY34817.1|2681977_2682271_+	biotin--protein ligase	NA	NA	NA	NA	NA
AZY34818.1|2682267_2683044_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY34819.1|2683072_2683900_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY34820.1|2684025_2684496_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34821.1|2684622_2685516_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY34822.1|2685563_2686745_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY34823.1|2686757_2687573_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34824.1|2687706_2688234_-	RES domain-containing protein	NA	NA	NA	NA	NA
AZY36129.1|2688230_2688728_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY34825.1|2688875_2689253_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY34826.1|2689474_2690425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36130.1|2690523_2691135_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY34827.1|2691369_2692497_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34828.1|2692607_2693696_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY34829.1|2693748_2694600_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY34830.1|2694619_2695501_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY36131.1|2695677_2696991_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY34831.1|2697201_2698035_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY34832.1|2698031_2698613_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY34833.1|2698966_2699917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34834.1|2699932_2701048_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34835.1|2701150_2702077_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY34836.1|2702076_2703315_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY34837.1|2703311_2704079_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY34838.1|2704079_2704781_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY36132.1|2704862_2705309_-	glutamate racemase	NA	NA	NA	NA	NA
AZY34839.1|2706198_2706837_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY34840.1|2707605_2708556_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34841.1|2708654_2709605_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2808732	2863249	4107433	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AZY34925.1|2808732_2809683_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34926.1|2809669_2809864_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34927.1|2810011_2810617_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY34928.1|2810670_2811984_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY34929.1|2812058_2812529_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY34930.1|2812528_2813317_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY34931.1|2813327_2814980_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY34932.1|2815067_2816018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36138.1|2817179_2817686_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY34933.1|2817682_2818447_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY34934.1|2818462_2818747_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY34935.1|2818811_2819801_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY34936.1|2819972_2820902_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY34937.1|2820873_2821560_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY34938.1|2821593_2822139_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY34939.1|2822183_2823449_+	peptidase M48	NA	NA	NA	NA	NA
AZY34940.1|2823445_2824348_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY34941.1|2825529_2826474_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY34942.1|2826568_2828086_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34943.1|2828127_2829756_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY34944.1|2829863_2830745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34945.1|2833857_2834232_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY34946.1|2834256_2834595_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY34947.1|2834638_2836273_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY34948.1|2836311_2837658_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY36139.1|2837765_2839187_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY34949.1|2839256_2839841_-	nitroreductase	NA	NA	NA	NA	NA
AZY34950.1|2839943_2840894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34951.1|2841028_2842135_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34952.1|2842145_2843243_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY34953.1|2843387_2844593_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY34954.1|2844599_2845121_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY34955.1|2845117_2845609_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY34956.1|2845605_2845857_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY34957.1|2845837_2846323_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY34958.1|2846458_2849920_+	hypothetical protein	NA	NA	NA	NA	NA
AZY34959.1|2849916_2850822_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY34960.1|2850831_2851263_-	lipoprotein	NA	NA	NA	NA	NA
AZY36140.1|2851509_2852013_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY34961.1|2852024_2853491_+	MFS transporter	NA	NA	NA	NA	NA
AZY34962.1|2853565_2854441_-	hypothetical protein	NA	NA	NA	NA	NA
AZY36141.1|2854437_2855445_-	biotin synthase	NA	NA	NA	NA	NA
AZY34963.1|2855912_2856218_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY34964.1|2856308_2856899_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36142.1|2857089_2858106_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY34965.1|2858297_2860634_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY34966.1|2860716_2861151_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY34967.1|2861249_2862200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34968.1|2862298_2863249_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2871274	2928060	4107433	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZY34976.1|2871274_2872225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34977.1|2873931_2874237_-	hypothetical protein	NA	NA	NA	NA	NA
AZY34978.1|2874905_2875244_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY34979.1|2879797_2880400_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY34980.1|2880496_2881786_+	MFS transporter	NA	NA	NA	NA	NA
AZY34981.1|2881843_2882575_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY34982.1|2882571_2883375_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY34983.1|2883371_2884460_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY34984.1|2884456_2885386_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY34985.1|2885534_2886680_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY34986.1|2886701_2887652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY34987.1|2887982_2891804_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY34988.1|2891960_2892629_-	lipoprotein	NA	NA	NA	NA	NA
AZY34989.1|2892633_2894307_-	MCE family protein	NA	NA	NA	NA	NA
AZY34990.1|2894325_2895645_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY34991.1|2895649_2898001_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY36143.1|2898020_2900189_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY34992.1|2900185_2905375_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY34993.1|2905464_2905779_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY34994.1|2906006_2906252_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY34995.1|2906346_2906865_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY34996.1|2906964_2908170_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY34997.1|2908285_2909683_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY34998.1|2909799_2910378_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY34999.1|2910450_2911842_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY35000.1|2912009_2912960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35001.1|2913240_2913861_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY35002.1|2913857_2914271_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY35003.1|2914267_2915311_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY35004.1|2915366_2915555_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35005.1|2915564_2916329_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY35006.1|2916419_2917076_+	adenylate kinase	NA	NA	NA	NA	NA
AZY35007.1|2917167_2917926_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY35008.1|2917951_2919553_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY35009.1|2919753_2920758_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY35010.1|2920858_2921122_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY35011.1|2921239_2922016_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY35012.1|2922606_2923557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35013.1|2925940_2927053_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY35014.1|2927109_2928060_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	2958446	3002137	4107433	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZY35043.1|2958446_2959397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35044.1|2959383_2959629_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35045.1|2959517_2960414_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY35046.1|2962691_2964917_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY35047.1|2965081_2966170_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY35048.1|2966126_2966780_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY35049.1|2966827_2967625_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35050.1|2968156_2969107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35051.1|2969187_2970336_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY35052.1|2970392_2971343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35053.1|2971329_2971548_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35054.1|2971441_2971747_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY35055.1|2971775_2972210_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY35056.1|2972211_2973456_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY35057.1|2973452_2974163_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36145.1|2974177_2975089_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35058.1|2975451_2975856_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35059.1|2975852_2976311_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35060.1|2976317_2977226_+	hypothetical protein	NA	NA	NA	NA	NA
AZY36146.1|2977222_2978089_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY35061.1|2978075_2978903_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY35062.1|2978913_2980041_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY35063.1|2981118_2982357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35064.1|2982398_2983661_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35065.1|2983667_2984420_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY35066.1|2984471_2984657_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35067.1|2984932_2985397_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY35068.1|2985428_2986088_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY35069.1|2986232_2988341_+	AsmA family protein	NA	NA	NA	NA	NA
AZY35070.1|2988337_2989288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35071.1|2989391_2990012_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY36147.1|2990115_2990856_+	oxidoreductase	NA	NA	NA	NA	NA
AZY35072.1|2991990_2993115_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35073.1|2993160_2993529_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35074.1|2993770_2994721_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35075.1|2995756_2996299_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35076.1|2996503_2996698_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35077.1|2996684_2997635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35078.1|2997631_2998597_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35079.1|2998666_2999503_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY35080.1|2999979_3001125_+	porin	NA	NA	NA	NA	NA
AZY35081.1|3001186_3002137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	3235651	3270489	4107433	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZY35264.1|3235651_3236602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35265.1|3237046_3237358_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY35266.1|3237357_3237888_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35267.1|3238050_3239001_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35268.1|3239290_3239755_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY35269.1|3239769_3241275_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY35270.1|3241528_3243136_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY35271.1|3243191_3244097_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY35272.1|3244537_3245488_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35273.1|3245586_3246537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35274.1|3246618_3247200_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY36165.1|3247624_3247930_+	RND transporter	NA	NA	NA	NA	NA
AZY35275.1|3247943_3249278_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY35276.1|3249299_3249839_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY35277.1|3249986_3250451_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY35278.1|3250593_3251709_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY35279.1|3251985_3252489_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY35280.1|3252626_3252827_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35281.1|3252817_3253540_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY35282.1|3253536_3254433_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY35283.1|3254429_3255365_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36166.1|3255370_3255994_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY35284.1|3255984_3256953_+	nickel transporter	NA	NA	NA	NA	NA
AZY35285.1|3257001_3259143_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY35286.1|3259155_3260136_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY35287.1|3260150_3260843_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY35288.1|3260869_3261781_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY35289.1|3261823_3262714_-	acyltransferase	NA	NA	NA	NA	NA
AZY35290.1|3262710_3263565_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY35291.1|3263713_3265012_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY35292.1|3265122_3265374_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY35293.1|3265453_3266494_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY35294.1|3266773_3268192_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY35295.1|3268262_3268598_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY35296.1|3268597_3269440_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY35297.1|3269538_3270489_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	3282318	3333197	4107433	integrase,protease,transposase,tRNA	Planktothrix_phage(33.33%)	40	3315993:3316011	3335881:3335899
AZY35306.1|3282318_3283269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY36168.1|3283581_3285060_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY35307.1|3285066_3286176_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY35308.1|3286187_3286868_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY35309.1|3286889_3287645_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY36169.1|3287780_3288665_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY35310.1|3288752_3289334_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35311.1|3289426_3289549_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35312.1|3289594_3289894_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY36170.1|3290045_3290471_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35313.1|3292677_3293181_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY35314.1|3293196_3294147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35315.1|3294133_3294331_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35316.1|3294674_3295448_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35317.1|3295580_3296591_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35318.1|3296742_3298398_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY35319.1|3298452_3298794_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY35320.1|3298807_3300247_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY35321.1|3300379_3301195_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35322.1|3301213_3301402_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35323.1|3301388_3302339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35324.1|3303726_3304674_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35325.1|3304900_3305641_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35326.1|3305726_3306677_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35327.1|3308118_3309690_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY35328.1|3310022_3311876_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35329.1|3311920_3314485_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY35330.1|3314903_3315854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3315993:3316011	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY35331.1|3318719_3319214_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY35332.1|3319230_3320181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35333.1|3320167_3320368_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35334.1|3320364_3321576_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY35335.1|3321591_3324543_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY35336.1|3324544_3327664_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY36171.1|3327660_3327801_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY35337.1|3327811_3328858_-	Fic family protein	NA	NA	NA	NA	NA
AZY35338.1|3329199_3330327_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY35339.1|3330606_3331698_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY35340.1|3331770_3332553_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY35341.1|3332549_3333197_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3335881:3335899	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	3382084	3435825	4107433	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY35378.1|3382084_3383035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35379.1|3383439_3384084_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY35380.1|3384108_3384693_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY35381.1|3384793_3385411_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY35382.1|3385413_3387129_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY35383.1|3387125_3387434_-	urease subunit beta	NA	NA	NA	NA	NA
AZY35384.1|3387450_3388086_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY35385.1|3388112_3388415_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY35386.1|3388515_3389370_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY35387.1|3389951_3390224_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY35388.1|3390641_3391049_-	GFA family protein	NA	NA	NA	NA	NA
AZY35389.1|3391418_3392213_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35390.1|3392313_3393549_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY35391.1|3393617_3394634_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35392.1|3394630_3396022_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY35393.1|3396018_3397215_+	MFS transporter	NA	NA	NA	NA	NA
AZY35394.1|3397211_3398750_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY35395.1|3398746_3400006_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35396.1|3401946_3402897_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35397.1|3403663_3404758_-	CoA transferase	NA	NA	NA	NA	NA
AZY35398.1|3404750_3406085_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY35399.1|3406038_3406722_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35400.1|3406747_3407911_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY35401.1|3407907_3408909_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY35402.1|3408908_3409781_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY35403.1|3409777_3410527_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY35404.1|3410523_3411315_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY35405.1|3411311_3412451_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35406.1|3412759_3413512_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY35407.1|3413545_3414328_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY35408.1|3414331_3414721_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY35409.1|3415860_3416724_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY35410.1|3416759_3417848_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35411.1|3417844_3418795_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35412.1|3418781_3419150_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35413.1|3419148_3422127_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35414.1|3423053_3423932_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY35415.1|3425880_3426831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35416.1|3426827_3427295_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY35417.1|3427337_3428108_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY35418.1|3428128_3428929_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY35419.1|3428939_3430349_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY35420.1|3430443_3431229_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY36174.1|3431468_3432485_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY35421.1|3432592_3432985_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY35422.1|3433122_3433803_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY35423.1|3433807_3434806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35424.1|3434874_3435825_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	3441980	3501278	4107433	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY35428.1|3441980_3443744_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY35429.1|3443855_3444734_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY35430.1|3444846_3445662_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY35431.1|3445665_3445917_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY36175.1|3446001_3447018_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY35432.1|3447348_3447570_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35433.1|3449930_3450848_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY35434.1|3451345_3452554_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY35435.1|3452633_3454205_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35436.1|3454322_3455258_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY35437.1|3455446_3456391_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY35438.1|3456459_3456675_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35439.1|3456958_3462676_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY35440.1|3462681_3463809_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY35441.1|3463864_3464491_+	aminotransferase	NA	NA	NA	NA	NA
AZY36176.1|3464762_3465779_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY35442.1|3465874_3466585_-	oxidoreductase	NA	NA	NA	NA	NA
AZY36177.1|3466581_3467571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35443.1|3467702_3469298_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY35444.1|3469300_3470038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35445.1|3470193_3471066_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY35446.1|3471334_3472555_+	MFS transporter	NA	NA	NA	NA	NA
AZY35447.1|3472551_3473211_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY35448.1|3473282_3473915_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY35449.1|3473944_3474463_+	flavin reductase	NA	NA	NA	NA	NA
AZY35450.1|3474473_3475583_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY35451.1|3475629_3476484_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY35452.1|3476485_3477388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35453.1|3478610_3479561_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35454.1|3481315_3482305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35455.1|3482480_3483269_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY35456.1|3483265_3484297_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY35457.1|3484315_3484879_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY35458.1|3484934_3486455_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY35459.1|3486718_3487423_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY35460.1|3487430_3488168_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY35461.1|3488273_3488648_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY35462.1|3488690_3489980_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35463.1|3489976_3491146_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY35464.1|3491142_3491982_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY35465.1|3492041_3492977_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY35466.1|3492989_3493940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35467.1|3494038_3495001_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY35468.1|3495032_3495392_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY35469.1|3495516_3496419_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY35470.1|3496420_3498193_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY35471.1|3498227_3499004_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY35472.1|3500327_3501278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	3516216	3574289	4107433	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY35484.1|3516216_3517167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35485.1|3517295_3518429_-	peptidase	NA	NA	NA	NA	NA
AZY35486.1|3518472_3519378_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY35487.1|3519380_3521081_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY35488.1|3521077_3521998_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY35489.1|3522005_3522983_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY35490.1|3523041_3524076_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY35491.1|3526050_3526287_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35492.1|3526413_3527277_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY35493.1|3527365_3528187_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY35494.1|3528266_3529004_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY35495.1|3529000_3529993_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY35496.1|3530106_3530769_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35497.1|3530813_3531962_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY35498.1|3534285_3535236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35499.1|3535576_3536527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35500.1|3536625_3537576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35501.1|3537872_3538370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35502.1|3538412_3540188_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY36180.1|3540234_3541062_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY35503.1|3541068_3541803_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY35504.1|3542972_3543767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35505.1|3544056_3544647_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY35506.1|3544680_3546009_-	amidase	NA	NA	NA	NA	NA
AZY35507.1|3546083_3547229_-	transporter	NA	NA	NA	NA	NA
AZY35508.1|3547340_3548339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35509.1|3548301_3548736_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY35510.1|3550252_3551137_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY35511.1|3551133_3552339_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY35512.1|3552335_3553196_-	endonuclease	NA	NA	NA	NA	NA
AZY35513.1|3553308_3555099_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY35514.1|3555139_3555805_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY35515.1|3555805_3556114_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY36181.1|3556279_3557566_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35516.1|3558999_3559950_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35517.1|3561901_3563116_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY35518.1|3563221_3564211_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY35519.1|3564207_3564816_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY35520.1|3564828_3565458_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY35521.1|3565454_3566075_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY35522.1|3566106_3566898_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY35523.1|3567740_3568205_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY35524.1|3568223_3569150_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY35525.1|3569203_3570490_-	cytochrome c	NA	NA	NA	NA	NA
AZY35526.1|3571420_3572293_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY35527.1|3572289_3573240_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY35528.1|3573338_3574289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025477	Bordetella pertussis strain I859 chromosome, complete genome	4107433	4006501	4071413	4107433	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY35916.1|4006501_4006987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35917.1|4007205_4008186_+	protein BugT	NA	NA	NA	NA	NA
AZY35918.1|4008452_4009262_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY35919.1|4009301_4009982_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY35920.1|4009975_4010434_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY35921.1|4010445_4010808_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY35922.1|4010890_4011574_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY35923.1|4011629_4011938_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY35924.1|4011956_4012271_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY35925.1|4012267_4014742_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY35926.1|4014749_4016141_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY35927.1|4016137_4016323_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY35928.1|4016301_4017003_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY35929.1|4016999_4017821_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY36203.1|4017801_4018926_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY35930.1|4018918_4019938_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY35931.1|4020143_4021178_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY36204.1|4021278_4022070_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY35932.1|4022152_4022527_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY35933.1|4022504_4023914_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY35934.1|4023906_4025289_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY35935.1|4025623_4027228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY35936.1|4027263_4028277_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY35937.1|4028287_4029214_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY35938.1|4029604_4030555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35939.1|4030724_4031951_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY35940.1|4032150_4033017_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY35941.1|4033009_4033972_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY35942.1|4034072_4035023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35943.1|4035121_4036072_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35944.1|4036170_4037121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY35945.1|4037117_4038611_-	RND transporter	NA	NA	NA	NA	NA
AZY35946.1|4038607_4041715_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY35947.1|4041711_4044780_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY35948.1|4044776_4046027_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY35949.1|4046207_4046969_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY35950.1|4047001_4047652_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY35951.1|4047654_4048494_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY35952.1|4048734_4049478_+	hypothetical protein	NA	NA	NA	NA	NA
AZY35953.1|4049560_4049908_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY35954.1|4050005_4050848_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY35955.1|4050892_4051780_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY35956.1|4051806_4051995_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY35957.1|4052092_4053550_+	MFS transporter	NA	NA	NA	NA	NA
AZY35958.1|4053536_4055063_+	glycerol kinase	NA	NA	NA	NA	NA
AZY35959.1|4055081_4055549_-	hypothetical protein	NA	NA	NA	NA	NA
AZY35960.1|4055548_4056571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY35961.1|4056691_4057432_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY35962.1|4057486_4058587_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY35963.1|4058588_4059779_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY35964.1|4059898_4060915_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY35965.1|4061233_4061905_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY35966.1|4061901_4062810_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY35967.1|4063021_4063669_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY35968.1|4067520_4068597_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY35969.1|4068607_4069417_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY35970.1|4069506_4070280_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY35971.1|4070462_4071413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
