The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	0	122073	4105347	transposase,protease,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY58048.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY58049.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY58050.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY58051.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY58052.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY58053.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY58054.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY58055.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY58056.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY58057.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY58058.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY58059.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY58060.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY58061.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY61447.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY58062.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58063.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY58064.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY58065.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58066.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY58067.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58068.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY58069.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY61448.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58070.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY58071.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY58072.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58073.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY58074.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY58075.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY58076.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY58077.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY58078.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY58079.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY58080.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY58081.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY58082.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58083.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58084.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY58085.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58086.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY58087.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY58088.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58089.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY58090.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY58091.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY58092.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58093.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58094.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY58095.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58096.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY58097.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY58098.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58099.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58100.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY58101.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY58102.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY58103.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY58104.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58105.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58106.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY58107.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY58108.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY58109.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY58110.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61449.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58111.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY58112.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61450.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58113.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY58114.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY58115.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY58116.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY58117.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY58118.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY58119.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY58120.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY58121.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY58122.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY61451.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY58123.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY58124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58125.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY58126.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY58127.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY58128.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY58129.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58130.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY58131.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY58132.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY58133.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY58134.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY58135.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY58136.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY58137.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY58138.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY58139.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58140.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY58141.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY58142.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY58143.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY61452.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY58144.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58145.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY58146.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY58147.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY58148.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY58149.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY58150.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY58151.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	164893	225404	4105347	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY58183.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58184.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58185.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY58186.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY58187.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY58188.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY58189.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61457.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY58190.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58191.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY58192.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY58193.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY58194.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY58195.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58196.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY58197.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY58198.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY58199.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY58200.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY58201.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY61458.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY58202.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58203.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY58204.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY58205.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58206.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY58207.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY58208.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY58209.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY58210.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY58211.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58212.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY58213.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58214.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58215.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY58216.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY58217.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY58218.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY58219.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY58220.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY58221.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY61459.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58222.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY58223.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY58224.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY58225.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY58226.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY58227.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY58228.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY58229.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY58230.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	233336	287973	4105347	transposase,protease,tRNA	Bacillus_phage(25.0%)	49	NA	NA
AZY58238.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58239.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58240.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58241.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY58242.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY58243.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58244.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY58245.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58246.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58247.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY58248.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY58249.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY58250.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY58251.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY58252.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY58253.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY58254.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61460.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY58255.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY58256.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY58257.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZY58258.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY58259.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58260.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY58261.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZY58262.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58263.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58264.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58265.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY58266.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY58267.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY58268.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY58269.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY58270.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY58271.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY58272.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58273.1|278189_279140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58274.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58275.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY58276.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58277.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY58278.1|280704_281316_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY58279.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
AZY58280.1|282348_283731_-	cytochrome b	NA	NA	NA	NA	NA
AZY58281.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY58282.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY58283.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY61461.1|285889_287026_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY58284.1|287022_287973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	391906	449415	4105347	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY58383.1|391906_392857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58384.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
AZY58385.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY58386.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
AZY58387.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58388.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
AZY58389.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58390.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61467.1|401067_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY58391.1|402206_403190_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58392.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58393.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY58394.1|404633_405875_-	CoA transferase	NA	NA	NA	NA	NA
AZY58395.1|405979_407686_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY58396.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58397.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY58398.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58399.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61468.1|412379_413357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58400.1|413435_414386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58401.1|414474_415389_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY58402.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
AZY58403.1|416134_417058_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY58404.1|417063_417519_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58405.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY61469.1|418538_418847_+	GtrA family protein	NA	NA	NA	NA	NA
AZY58406.1|418806_420426_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY58407.1|420422_421481_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY58408.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY58409.1|422197_423175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58410.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY58411.1|424572_426084_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY61470.1|426099_427413_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY58412.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58413.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY58414.1|431371_432322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58415.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY58416.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
AZY58417.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY58418.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY58419.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY58420.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY58421.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
AZY58422.1|440259_441045_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY58423.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58424.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58425.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY58426.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY58427.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY58428.1|448464_449415_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	621849	722313	4105347	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY58580.1|621849_622800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58581.1|623498_623882_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58582.1|623939_624542_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY61476.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
AZY61477.1|625094_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58583.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY58584.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
AZY58585.1|628135_629185_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY58586.1|629332_629911_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY58587.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY58588.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY58589.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58590.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY58591.1|637838_638789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58592.1|638887_639688_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58593.1|639749_640133_+	thioredoxin	NA	NA	NA	NA	NA
AZY58594.1|640144_641578_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY58595.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY61478.1|642116_642785_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58596.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY58597.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY58598.1|644250_644673_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY58599.1|644689_645790_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY58600.1|645886_647404_-	peptidase	NA	NA	NA	NA	NA
AZY58601.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY58602.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY58603.1|649303_650398_-	porin	NA	NA	NA	NA	NA
AZY58604.1|650691_651642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61479.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58605.1|652741_653101_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58606.1|653482_654520_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58607.1|654836_656177_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY58608.1|656186_656639_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58609.1|656735_657917_+	monooxygenase	NA	NA	NA	NA	NA
AZY58610.1|657976_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY58611.1|659048_659288_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY58612.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY58613.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY58614.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY58615.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY58616.1|663151_664120_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY58617.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY58618.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY58619.1|667217_668168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58620.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY58621.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY58622.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
AZY58623.1|670885_671641_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61480.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58624.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58625.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY58626.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY58627.1|674954_676697_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY58628.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY58629.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY58630.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58631.1|679387_680338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58632.1|680589_680802_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61481.1|680867_681479_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY58633.1|681958_682279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58634.1|682271_682970_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58635.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58636.1|683223_684174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61482.1|684849_685299_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY58637.1|685285_686563_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY58638.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY61483.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY58639.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY58640.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY58641.1|690469_691420_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58642.1|691437_692085_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY58643.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58644.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY58645.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58646.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY58647.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY58648.1|693879_694302_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58649.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY58650.1|695064_695583_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY58651.1|695592_695922_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY58652.1|695939_696230_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY58653.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY58654.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58655.1|699304_699838_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY58656.1|699834_700224_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY58657.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY58658.1|704177_704594_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58659.1|704812_705076_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY58660.1|705075_705888_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58661.1|705892_706135_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58662.1|706113_706665_+	lysozyme	NA	NA	NA	NA	NA
AZY58663.1|706646_707180_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY58664.1|707176_707458_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58665.1|707800_708001_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58666.1|708007_708679_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY58667.1|709034_709721_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY58668.1|709701_710274_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY58669.1|710339_712070_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY58670.1|712122_712551_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY58671.1|712553_713234_+	protein TolQ	NA	NA	NA	NA	NA
AZY58672.1|713233_713692_+	protein TolR	NA	NA	NA	NA	NA
AZY58673.1|713728_714703_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY58674.1|714719_716036_+	protein TolB	NA	NA	NA	NA	NA
AZY58675.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY58676.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY58677.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY58678.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY58679.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58680.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58681.1|721157_721376_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58682.1|721362_722313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	749238	822400	4105347	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY58703.1|749238_750189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58704.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY58705.1|751974_753240_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY58706.1|753397_754348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58707.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY61485.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY58708.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
AZY58709.1|758864_759389_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY58710.1|759348_760299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58711.1|760520_762716_-	DNA methylase	NA	NA	NA	NA	NA
AZY58712.1|762788_763196_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY58713.1|763318_764269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58714.1|764384_764828_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY58715.1|764890_765685_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY58716.1|765850_766987_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY58717.1|767057_768191_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY58718.1|768340_768601_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY58719.1|768634_768946_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY58720.1|769370_770519_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY58721.1|770633_771599_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY58722.1|771867_772734_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58723.1|772864_774913_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY58724.1|774930_776928_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY58725.1|776962_778300_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY58726.1|778562_780416_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58727.1|780470_781952_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY58728.1|781967_782555_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY61486.1|782637_782817_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58729.1|783003_788124_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY58730.1|788201_790340_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY58731.1|790336_791659_+	protein CyaD	NA	NA	NA	NA	NA
AZY58732.1|791660_793085_+	protein CyaE	NA	NA	NA	NA	NA
AZY58733.1|793175_794084_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58734.1|794148_795063_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY58735.1|795900_796584_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58736.1|796600_797344_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY58737.1|797373_798234_+	aminotransferase	NA	NA	NA	NA	NA
AZY58738.1|798241_798808_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58739.1|798896_799853_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58740.1|799897_800650_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY58741.1|800646_802392_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY58742.1|802476_803211_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58743.1|803527_804550_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY58744.1|804565_805288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58745.1|805432_806440_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY58746.1|806480_808013_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY58747.1|808009_809128_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY58748.1|809124_809907_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY58749.1|809918_810782_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY61487.1|810800_811898_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58750.1|811966_812893_-	VOC family protein	NA	NA	NA	NA	NA
AZY58751.1|812927_814622_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY58752.1|814821_815757_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY58753.1|815862_816813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58754.1|816911_817568_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY58755.1|817715_820424_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY58756.1|820433_821453_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY58757.1|821449_822400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	855147	904411	4105347	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY58786.1|855147_856098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61488.1|856070_856670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58787.1|856671_857106_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY58788.1|857102_857537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58789.1|857520_858324_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY58790.1|858340_859156_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY58791.1|859152_859968_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY58792.1|860114_860816_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58793.1|860843_862802_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY58794.1|862884_863835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58795.1|864055_864724_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY58796.1|864847_865954_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY58797.1|865966_869080_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY58798.1|869076_870570_+	RND transporter	NA	NA	NA	NA	NA
AZY58799.1|870584_871256_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY58800.1|871299_871794_-	azurin	NA	NA	NA	NA	NA
AZY58801.1|871934_872582_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY61489.1|872685_874734_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY58802.1|874730_876743_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY58803.1|876768_878103_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY58804.1|878211_879204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58805.1|879270_881355_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY58806.1|881379_882351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58807.1|882479_883481_-	peptidase M14	NA	NA	NA	NA	NA
AZY58808.1|883514_884756_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY58809.1|884836_885760_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY58810.1|885837_886662_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY58811.1|886858_887875_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY58812.1|888071_889055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58813.1|890653_892042_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY58814.1|892072_893062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58815.1|893172_894405_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY58816.1|894686_895487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58817.1|895509_897741_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY58818.1|898528_898975_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY58819.1|898996_899743_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY58820.1|899886_900864_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY58821.1|901497_902109_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY58822.1|902102_903320_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY58823.1|903460_904411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	914023	978962	4105347	transposase	Bacillus_phage(18.18%)	59	NA	NA
AZY58832.1|914023_914974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58833.1|914970_916821_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY58834.1|917201_917861_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY58835.1|917948_918101_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58836.1|918209_918377_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58837.1|918388_919069_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY58838.1|919350_920067_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY58839.1|920081_921383_-	phospholipase	NA	NA	NA	NA	NA
AZY58840.1|923527_926416_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY58841.1|926639_927992_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY58842.1|928537_929992_+	carboxylase	NA	NA	NA	NA	NA
AZY58843.1|930026_930275_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58844.1|930380_931256_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58845.1|931281_932337_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58846.1|932349_933141_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58847.1|933173_934544_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY58848.1|935720_936671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58849.1|936723_936945_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58850.1|937104_937317_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58851.1|937436_938555_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY58852.1|938651_938867_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58853.1|939060_939312_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58854.1|939424_940375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58855.1|940371_940755_-	ferredoxin	NA	NA	NA	NA	NA
AZY58856.1|940809_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY61491.1|942773_943601_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY58857.1|943646_944627_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY58858.1|944623_944836_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58859.1|944832_946014_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY58860.1|946177_946912_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY58861.1|946913_949526_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY58862.1|949661_951575_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY58863.1|952190_952601_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY58864.1|952698_953784_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY58865.1|953882_954833_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58866.1|954829_955804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58867.1|955928_956840_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY61492.1|957116_957509_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY58868.1|957638_958589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58869.1|958618_958801_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY58870.1|958839_959097_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58871.1|959573_960755_-	MFS transporter	NA	NA	NA	NA	NA
AZY58872.1|960970_961648_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY58873.1|961644_962418_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY58874.1|962495_963077_-	OmpA family protein	NA	NA	NA	NA	NA
AZY58875.1|963447_966129_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY58876.1|966128_967262_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY58877.1|967254_968340_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY58878.1|968426_969326_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY58879.1|969322_970651_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY58880.1|970665_971337_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY58881.1|971509_973240_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY58882.1|973241_973601_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY58883.1|973792_974107_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY58884.1|974149_975370_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY58885.1|975366_976308_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY58886.1|976304_977294_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY58887.1|977328_977913_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY58888.1|978011_978962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	998367	1061518	4105347	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY58903.1|998367_999318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58904.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY58905.1|1000609_1001626_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY58906.1|1003134_1003707_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY58907.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY61494.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58908.1|1006274_1009454_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY58909.1|1009450_1010833_+	multidrug transporter	NA	NA	NA	NA	NA
AZY58910.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY58911.1|1011299_1011950_-	SCO family protein	NA	NA	NA	NA	NA
AZY58912.1|1012100_1014215_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY58913.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY58914.1|1015138_1015765_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY58915.1|1015761_1017516_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY58916.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY58917.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY58918.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY58919.1|1024212_1025388_-	flagellin FliC	NA	NA	NA	NA	NA
AZY58920.1|1025430_1026381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58921.1|1026479_1027220_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY58922.1|1027414_1029451_+	transketolase	NA	NA	NA	NA	NA
AZY58923.1|1029468_1030479_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY58924.1|1030596_1031790_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY58925.1|1031819_1032593_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY58926.1|1032589_1033780_-	acetate kinase	NA	NA	NA	NA	NA
AZY58927.1|1033805_1034744_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY61495.1|1034740_1037089_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY58928.1|1037243_1037951_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY58929.1|1037988_1039122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58930.1|1039398_1039947_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY58931.1|1039965_1040451_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY58932.1|1040628_1041567_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY58933.1|1041569_1041887_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY58934.1|1041932_1042877_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58935.1|1044557_1045208_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY58936.1|1045261_1045597_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58937.1|1045593_1046454_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY58938.1|1046470_1046752_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58939.1|1046825_1047089_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY58940.1|1047332_1048283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58941.1|1048581_1049319_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY58942.1|1049754_1050078_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY58943.1|1050112_1050673_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY58944.1|1050793_1051669_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY58945.1|1051681_1052629_+	motility protein MotB	NA	NA	NA	NA	NA
AZY58946.1|1052730_1053024_+	response regulator	NA	NA	NA	NA	NA
AZY58947.1|1053050_1055108_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY58948.1|1055122_1055623_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY58949.1|1055696_1057403_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY58950.1|1058266_1059319_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY58951.1|1059371_1059761_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY58952.1|1059769_1060402_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY58953.1|1060501_1061518_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1067502	1135664	4105347	transposase,tRNA,holin	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
AZY58958.1|1067502_1068930_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY58959.1|1069867_1070884_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY58960.1|1071216_1072152_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY58961.1|1072201_1074082_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY58962.1|1074148_1074493_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY58963.1|1074637_1075774_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY58964.1|1075770_1076844_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY58965.1|1077001_1078438_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY61497.1|1078528_1079170_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY58966.1|1079505_1080522_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY61498.1|1083668_1085090_-	siroheme synthase	NA	NA	NA	NA	NA
AZY58967.1|1085353_1086070_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58968.1|1086154_1086472_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY58969.1|1086512_1086926_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY58970.1|1086927_1087287_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58971.1|1087329_1088874_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY58972.1|1088957_1089788_+	transglycosylase	NA	NA	NA	NA	NA
AZY58973.1|1089822_1090977_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY58974.1|1091019_1091892_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58975.1|1092008_1094297_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY58976.1|1095503_1095968_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY58977.1|1095994_1096945_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61499.1|1097312_1098089_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY58978.1|1098133_1098991_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY58979.1|1099012_1100029_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY58980.1|1100163_1101204_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY58981.1|1101398_1103480_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY58982.1|1103715_1105209_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY58983.1|1105439_1106234_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY58984.1|1106454_1107813_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY58985.1|1107809_1108652_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY58986.1|1108670_1110557_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY58987.1|1110794_1111427_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY58988.1|1111445_1112048_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58989.1|1112199_1113150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58990.1|1113952_1114753_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58991.1|1114796_1115783_-	homoserine kinase	NA	NA	NA	NA	NA
AZY58992.1|1115922_1116936_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY58993.1|1116932_1117883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58994.1|1117995_1118454_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY58995.1|1118490_1119804_-	hypothetical protein	NA	NA	NA	NA	NA
AZY58996.1|1119821_1120193_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY58997.1|1120189_1121653_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY58998.1|1121745_1122522_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY58999.1|1122503_1125383_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY59000.1|1125565_1126516_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59001.1|1126683_1127508_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY59002.1|1127507_1128386_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY59003.1|1129290_1130406_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59004.1|1130413_1131229_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY59005.1|1131225_1133091_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY59006.1|1133169_1133802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59007.1|1133798_1134101_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59008.1|1134143_1135664_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1446930	1502417	4105347	transposase,protease	Mollivirus(16.67%)	56	NA	NA
AZY59247.1|1446930_1447881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59248.1|1449082_1449529_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY59249.1|1449521_1450997_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY59250.1|1450993_1451749_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY59251.1|1451741_1452752_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY59252.1|1452741_1454418_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY59253.1|1454730_1455063_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY59254.1|1455076_1455472_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59255.1|1455481_1455808_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY59256.1|1455804_1456131_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY59257.1|1456057_1456471_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59258.1|1457075_1457456_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY59259.1|1457473_1457902_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY59260.1|1457909_1459283_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY61520.1|1459423_1459801_-	flagellar protein	NA	NA	NA	NA	NA
AZY59261.1|1460063_1461371_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY59262.1|1461431_1462262_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY59263.1|1462258_1462747_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY59264.1|1462788_1464309_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY61521.1|1464352_1464829_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY59265.1|1465632_1468230_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY59266.1|1468259_1469081_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY59267.1|1469807_1470557_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY59268.1|1470689_1471619_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY59269.1|1471716_1472433_+	UMP kinase	NA	NA	NA	NA	NA
AZY59270.1|1472447_1473008_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY59271.1|1473045_1473939_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY59272.1|1473958_1474816_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY59273.1|1474812_1476012_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY59274.1|1476051_1477386_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY59275.1|1477438_1479775_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY61522.1|1479900_1480464_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY59276.1|1480472_1481564_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY59277.1|1481635_1482091_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY59278.1|1482091_1482886_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY59279.1|1482882_1484064_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY59280.1|1484050_1484656_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY59281.1|1484652_1485426_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY59282.1|1485437_1486265_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY59283.1|1486426_1488790_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY59284.1|1488857_1489577_-	GMP synthase	NA	NA	NA	NA	NA
AZY59285.1|1489700_1490126_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY59286.1|1490160_1491111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59287.1|1491228_1492155_+	paraslipin	NA	NA	NA	NA	NA
AZY59288.1|1492220_1493378_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY59289.1|1493358_1493826_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY59290.1|1493973_1494924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59291.1|1494940_1495375_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY59292.1|1495364_1495715_+	RnfH family protein	NA	NA	NA	NA	NA
AZY59293.1|1495911_1497066_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY59294.1|1497062_1498235_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY59295.1|1498282_1499176_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY59296.1|1499221_1499659_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY59297.1|1499718_1500408_+	VIT family protein	NA	NA	NA	NA	NA
AZY59298.1|1500417_1501368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59299.1|1501466_1502417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1541740	1599822	4105347	transposase,protease,tRNA	Planktothrix_phage(15.38%)	60	NA	NA
AZY59332.1|1541740_1542553_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY59333.1|1542697_1543792_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59334.1|1544003_1544633_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59335.1|1544635_1546303_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY59336.1|1546317_1546974_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY59337.1|1547453_1548404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59338.1|1548430_1549204_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY59339.1|1549215_1550457_+	MFS transporter	NA	NA	NA	NA	NA
AZY59340.1|1552238_1553189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59341.1|1553220_1554318_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY59342.1|1554314_1555265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59343.1|1555686_1556079_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59344.1|1556084_1556861_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY59345.1|1557248_1559198_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY59346.1|1559218_1559764_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY59347.1|1559900_1560857_+	glutathione synthetase	NA	NA	NA	NA	NA
AZY59348.1|1560867_1561266_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY59349.1|1561381_1561651_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY59350.1|1561772_1563467_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY59351.1|1563631_1563856_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59352.1|1564454_1565405_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY59353.1|1565446_1566607_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59354.1|1566767_1567688_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY59355.1|1567700_1568342_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY59356.1|1568338_1569010_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY59357.1|1569006_1569777_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY59358.1|1569875_1570826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59359.1|1571042_1571447_-	GFA family protein	NA	NA	NA	NA	NA
AZY59360.1|1571520_1572711_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY59361.1|1572744_1573071_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY59362.1|1573093_1573609_-	transporter	NA	NA	NA	NA	NA
AZY59363.1|1573667_1574894_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY59364.1|1575071_1576202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY59365.1|1576436_1577018_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY59366.1|1577154_1578219_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY59367.1|1578303_1578750_-	GFA family protein	NA	NA	NA	NA	NA
AZY59368.1|1578974_1579856_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY59369.1|1579910_1580162_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY59370.1|1580164_1580566_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY59371.1|1580585_1580822_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59372.1|1580829_1581309_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY59373.1|1581494_1581974_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY59374.1|1581976_1583167_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY59375.1|1583171_1584224_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY59376.1|1584360_1585383_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY59377.1|1585474_1586311_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59378.1|1586503_1587409_+	agmatinase	NA	NA	NA	NA	NA
AZY59379.1|1587435_1588227_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59380.1|1588249_1588942_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY59381.1|1588963_1589716_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY59382.1|1589844_1591404_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY59383.1|1591435_1591981_+	acyl dehydratase	NA	NA	NA	NA	NA
AZY59384.1|1592118_1593375_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY59385.1|1593391_1595086_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY59386.1|1595243_1596131_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY59387.1|1596168_1597101_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY61524.1|1597114_1597603_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY59388.1|1597720_1598299_+|protease	protease	protease	NA	NA	NA	NA
AZY59389.1|1598371_1598773_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY59390.1|1598871_1599822_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1655027	1726181	4105347	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY59437.1|1655027_1655978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59438.1|1655999_1657220_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY59439.1|1657405_1658818_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY59440.1|1658881_1659949_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY59441.1|1659945_1661436_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY61527.1|1661445_1662390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59442.1|1662549_1663248_+	pirin family protein	NA	NA	NA	NA	NA
AZY59443.1|1663325_1664231_+	pirin family protein	NA	NA	NA	NA	NA
AZY59444.1|1664250_1665201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59445.1|1665299_1666094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY59446.1|1666098_1667769_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY59447.1|1667892_1668942_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59448.1|1669263_1670040_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY59449.1|1670104_1671007_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59450.1|1672300_1673104_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY59451.1|1675797_1676184_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY59452.1|1676199_1678290_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY59453.1|1678341_1679295_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY61528.1|1679309_1680197_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59454.1|1680334_1681861_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY61529.1|1681959_1682460_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY59455.1|1682783_1684739_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY59456.1|1684906_1686991_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59457.1|1687017_1687803_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY59458.1|1688658_1689429_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY59459.1|1689428_1690169_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY59460.1|1690210_1691380_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY59461.1|1691411_1693496_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY59462.1|1693492_1694383_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY59463.1|1694379_1695477_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY59464.1|1695499_1696789_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY59465.1|1696800_1697826_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY59466.1|1697822_1699880_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY59467.1|1699893_1701069_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY59468.1|1701150_1702101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59469.1|1702159_1702933_+	oxidoreductase	NA	NA	NA	NA	NA
AZY59470.1|1702925_1704482_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY59471.1|1704478_1705429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59472.1|1706755_1707358_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59473.1|1707597_1708299_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY59474.1|1708292_1709075_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY59475.1|1709259_1710210_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59476.1|1710308_1711046_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY59477.1|1711235_1711994_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY59478.1|1712040_1713030_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY59479.1|1713207_1714176_-	transporter	NA	NA	NA	NA	NA
AZY59480.1|1715715_1716684_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY59481.1|1716692_1717634_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY59482.1|1718107_1719118_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61530.1|1719108_1720623_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY59483.1|1720619_1721966_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61531.1|1721968_1723003_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY59484.1|1723052_1724678_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY59485.1|1725230_1726181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1746972	1808320	4105347	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY59500.1|1746972_1747923_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61536.1|1748216_1748939_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY59501.1|1749377_1750565_-	MFS transporter	NA	NA	NA	NA	NA
AZY59502.1|1750568_1750949_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59503.1|1752668_1753640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY59504.1|1753653_1754367_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY59505.1|1754371_1755289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59506.1|1755395_1755692_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59507.1|1755790_1756741_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59508.1|1757899_1760833_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY59509.1|1760832_1761177_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY59510.1|1761173_1762802_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY59511.1|1762798_1763278_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY59512.1|1763274_1763559_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY59513.1|1763555_1763882_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY59514.1|1764037_1764988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59515.1|1765031_1765574_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59516.1|1765671_1766520_+	hydrolase	NA	NA	NA	NA	NA
AZY59517.1|1766512_1767019_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY59518.1|1767015_1768017_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY59519.1|1768029_1768824_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY59520.1|1768872_1770774_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY59521.1|1770770_1771394_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59522.1|1771520_1772645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59523.1|1772962_1774630_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY59524.1|1774785_1775562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY59525.1|1775646_1776645_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59526.1|1776641_1777415_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY59527.1|1778399_1779350_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59528.1|1779373_1779838_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY59529.1|1779984_1781193_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY59530.1|1781203_1781674_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY59531.1|1781792_1783082_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY59532.1|1785822_1786773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59533.1|1786871_1787888_-	folate-binding protein	NA	NA	NA	NA	NA
AZY59534.1|1788054_1789101_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY59535.1|1789097_1789724_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY59536.1|1789720_1790773_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY59537.1|1790822_1791593_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY59538.1|1791643_1792480_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59539.1|1792675_1793416_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59540.1|1793490_1794234_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59541.1|1794895_1795669_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY61537.1|1796806_1798096_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY59542.1|1799706_1800954_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY59543.1|1800963_1802673_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY59544.1|1802669_1803608_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY59545.1|1803604_1804888_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY59546.1|1804891_1805374_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY59547.1|1805374_1806361_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59548.1|1806533_1807253_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59549.1|1807369_1808320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	1989505	2059157	4105347	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
AZY59682.1|1989505_1992163_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY59683.1|1992240_1993443_-	MFS transporter	NA	NA	NA	NA	NA
AZY59684.1|1993439_1993952_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61545.1|1994074_1994413_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY59685.1|1994788_1995739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59686.1|1995837_1996788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59687.1|1996951_1998847_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY59688.1|1998960_1999128_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY59689.1|1999191_1999428_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY59690.1|1999796_2000996_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY59691.1|2002511_2003462_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59692.1|2003913_2004915_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59693.1|2005087_2005945_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY59694.1|2005941_2007204_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY59695.1|2007304_2007679_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY59696.1|2007727_2008939_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY59697.1|2009023_2009794_+	spermidine synthase	NA	NA	NA	NA	NA
AZY59698.1|2009907_2010672_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61546.1|2010787_2011924_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY59699.1|2011920_2012727_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY59700.1|2014471_2015443_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY59701.1|2015599_2016112_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY59702.1|2016270_2017245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59703.1|2018245_2019040_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY61547.1|2019065_2019872_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY59704.1|2019982_2020573_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY59705.1|2020583_2021762_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59706.1|2021864_2022239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY59707.1|2022491_2023823_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY59708.1|2023889_2027120_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY59709.1|2028610_2029357_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY59710.1|2029441_2029903_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY59711.1|2029940_2030999_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY59712.1|2030961_2032791_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY59713.1|2032830_2033403_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY59714.1|2034827_2035739_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY59715.1|2035967_2037290_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY59716.1|2037649_2038285_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59717.1|2038244_2039195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59718.1|2040065_2040938_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY59719.1|2041015_2042155_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59720.1|2042504_2043770_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY59721.1|2043775_2044303_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY59722.1|2044307_2045126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY59723.1|2045125_2045848_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY59724.1|2045869_2046184_+	ferredoxin	NA	NA	NA	NA	NA
AZY59725.1|2046180_2047350_+	CoA transferase	NA	NA	NA	NA	NA
AZY59726.1|2047380_2048256_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY59727.1|2048252_2049572_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY59728.1|2049644_2050841_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY59729.1|2050851_2052339_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59730.1|2054933_2055833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59731.1|2055970_2056936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY59732.1|2057034_2057985_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59733.1|2058028_2058220_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59734.1|2058206_2059157_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2070653	2120049	4105347	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
AZY59746.1|2070653_2071604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59747.1|2072741_2073038_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59748.1|2073212_2074565_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY59749.1|2074707_2075724_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY61549.1|2077703_2078717_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY59750.1|2078803_2079709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59751.1|2079865_2080210_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59752.1|2080367_2080826_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY59753.1|2080839_2083056_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY59754.1|2083052_2084114_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59755.1|2084142_2085117_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY59756.1|2085068_2085887_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY59757.1|2085899_2086508_-	peptidase S16	NA	NA	NA	NA	NA
AZY59758.1|2086682_2087078_+	VOC family protein	NA	NA	NA	NA	NA
AZY59759.1|2087096_2088536_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY59760.1|2088564_2088912_+	GFA family protein	NA	NA	NA	NA	NA
AZY59761.1|2088930_2089881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59762.1|2090533_2091484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59763.1|2091567_2093385_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY59764.1|2093458_2094106_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59765.1|2094118_2095048_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY59766.1|2095217_2095682_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59767.1|2095929_2096610_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59768.1|2096658_2098350_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY59769.1|2098365_2098917_-	ATPase	NA	NA	NA	NA	NA
AZY59770.1|2098913_2099285_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY59771.1|2099397_2100234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY59772.1|2100244_2100769_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY59773.1|2100866_2101046_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY59774.1|2101175_2102207_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY59775.1|2102280_2102637_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY61550.1|2102626_2103502_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY59776.1|2103600_2104485_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59777.1|2104506_2105802_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY59778.1|2106750_2107401_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZY61551.1|2107488_2109009_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY59779.1|2109266_2111132_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY59780.1|2112177_2113128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59781.1|2114100_2114460_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY59782.1|2114447_2115884_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY59783.1|2115880_2116534_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY59784.1|2116530_2117730_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY59785.1|2117827_2119102_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY59786.1|2119098_2120049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2131253	2264227	4105347	transposase,protease,tRNA	Klosneuvirus(12.5%)	113	NA	NA
AZY59800.1|2131253_2132204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59801.1|2132163_2132577_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY59802.1|2132861_2133161_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61553.1|2133570_2135739_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY59803.1|2136538_2138569_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY59804.1|2138588_2138801_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY59805.1|2139078_2139618_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY59806.1|2139731_2141039_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY59807.1|2141103_2142261_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY59808.1|2142444_2143344_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY59809.1|2143362_2144667_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY59810.1|2144632_2145739_-	GTPase HflX	NA	NA	NA	NA	NA
AZY59811.1|2145826_2146063_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY59812.1|2146201_2147272_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY59813.1|2147275_2148631_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY59814.1|2148657_2149818_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY59815.1|2149820_2150459_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59816.1|2150460_2151765_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY59817.1|2151805_2153101_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY59818.1|2153107_2153614_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY59819.1|2153610_2154759_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY59820.1|2154786_2155212_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY59821.1|2155534_2158417_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY59822.1|2158509_2159265_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY59823.1|2160030_2161380_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY59824.1|2161478_2162429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59825.1|2162527_2163478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59826.1|2163551_2164025_+	RidA family protein	NA	NA	NA	NA	NA
AZY59827.1|2164050_2165259_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY59828.1|2165255_2166029_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY59829.1|2166028_2166652_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY59830.1|2166817_2167078_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY59831.1|2167381_2167963_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59832.1|2168029_2168284_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY59833.1|2168270_2170895_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY59834.1|2170966_2171785_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59835.1|2171781_2172387_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY59836.1|2172424_2173558_-	general secretion pathway protein	NA	NA	NA	NA	NA
AZY61554.1|2175273_2175648_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59837.1|2175745_2177020_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59838.1|2177023_2178601_-	lipoprotein	NA	NA	NA	NA	NA
AZY59839.1|2179507_2180863_-	amidase	NA	NA	NA	NA	NA
AZY59840.1|2180859_2182494_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY59841.1|2182486_2183317_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY59842.1|2183334_2184279_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY59843.1|2184331_2185906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59844.1|2185953_2186304_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59845.1|2187776_2188733_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59846.1|2188882_2190220_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59847.1|2190224_2191481_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY59848.1|2191676_2192723_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY59849.1|2192780_2193149_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY59850.1|2193279_2194152_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY59851.1|2194228_2195131_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59852.1|2196187_2197405_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY59853.1|2198678_2199629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59854.1|2199829_2200639_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY59855.1|2200763_2201714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59856.1|2201710_2202604_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY59857.1|2202728_2202923_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY59858.1|2202922_2203264_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY59859.1|2203273_2205136_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY59860.1|2205265_2205778_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY59861.1|2205780_2206104_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY59862.1|2206105_2206516_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY59863.1|2206553_2207765_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY59864.1|2207782_2208295_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY59865.1|2208510_2209002_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY59866.1|2209254_2211291_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY59867.1|2211368_2212571_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY59868.1|2212621_2213350_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY59869.1|2214907_2215858_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59870.1|2216428_2216641_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59871.1|2216658_2217390_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59872.1|2217424_2218066_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY59873.1|2218058_2218775_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY59874.1|2220939_2221716_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY59875.1|2221737_2222895_-	thiolase	NA	NA	NA	NA	NA
AZY59876.1|2222891_2223323_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59877.1|2223319_2224123_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY59878.1|2224136_2224592_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY59879.1|2224604_2225576_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY59880.1|2225641_2226865_-	CoA transferase	NA	NA	NA	NA	NA
AZY59881.1|2227092_2228043_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY59882.1|2228166_2230620_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY59883.1|2230808_2232113_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY59884.1|2232217_2232871_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY59885.1|2232873_2234184_-	trigger factor	NA	NA	NA	NA	NA
AZY59886.1|2234362_2234941_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY59887.1|2235052_2235253_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY59888.1|2235598_2236165_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY59889.1|2236248_2236452_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY59890.1|2236758_2237079_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59891.1|2237120_2237402_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59892.1|2237476_2238733_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY59893.1|2239115_2239445_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY59894.1|2241015_2241837_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY59895.1|2241836_2242976_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY59896.1|2242982_2243879_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY59897.1|2243875_2245801_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY59898.1|2246160_2248773_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY59899.1|2248825_2251126_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY59900.1|2251122_2252331_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY59901.1|2252592_2252967_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59902.1|2252963_2253914_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59903.1|2254012_2256007_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY59904.1|2256066_2257032_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY59905.1|2257021_2259883_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY59906.1|2259885_2260392_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY59907.1|2260496_2261705_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY59908.1|2261706_2262645_-	hypothetical protein	NA	NA	NA	NA	NA
AZY59909.1|2262806_2263280_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY59910.1|2263276_2264227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2350404	2413982	4105347	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
AZY59989.1|2350404_2351355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59990.1|2351656_2352133_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZY59991.1|2352756_2354394_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZY59992.1|2354424_2355738_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZY59993.1|2355871_2356189_+	hypothetical protein	NA	NA	NA	NA	NA
AZY59994.1|2356289_2357612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59995.1|2357608_2358559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59996.1|2358657_2359608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY59997.1|2360137_2361160_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY59998.1|2361188_2362019_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZY61562.1|2362035_2363733_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY59999.1|2363797_2364874_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZY60000.1|2365033_2365897_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY60001.1|2365927_2366497_+	phosphohydrolase	NA	NA	NA	NA	NA
AZY60002.1|2366513_2367365_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY60003.1|2368422_2369304_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZY60004.1|2369378_2370368_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZY60005.1|2370430_2371381_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY60006.1|2371443_2372301_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY60007.1|2372360_2372849_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60008.1|2374397_2375612_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY60009.1|2375608_2377195_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZY60010.1|2377213_2378281_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZY60011.1|2378385_2379930_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZY60012.1|2380349_2381924_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60013.1|2382031_2383048_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY60014.1|2383044_2383884_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY60015.1|2383888_2385526_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZY60016.1|2385522_2386473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60017.1|2386615_2387890_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZY60018.1|2387886_2388210_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY61563.1|2388282_2389296_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZY60019.1|2389315_2390578_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY60020.1|2390580_2391504_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY60021.1|2391500_2392994_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY60022.1|2393004_2393937_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY60023.1|2394118_2395444_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZY60024.1|2395478_2396834_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZY60025.1|2396894_2398493_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZY60026.1|2398569_2399301_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY60027.1|2399335_2400709_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZY60028.1|2400724_2401636_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZY60029.1|2401626_2402220_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZY60030.1|2402281_2402668_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZY60031.1|2402679_2403150_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZY60032.1|2403161_2403785_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY60033.1|2403805_2406553_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZY60034.1|2412829_2413045_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60035.1|2413031_2413982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2685968	2726636	4105347	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZY60266.1|2685968_2686919_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60267.1|2687029_2687212_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60268.1|2687311_2687908_-	lipoprotein	NA	NA	NA	NA	NA
AZY60269.1|2688091_2689183_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60270.1|2689682_2690093_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60271.1|2690151_2690493_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY60272.1|2690498_2692916_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY60273.1|2692928_2693951_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY60274.1|2694025_2694385_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY60275.1|2694400_2694598_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY60276.1|2694933_2695884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60277.1|2695870_2696059_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60278.1|2696078_2696528_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY60279.1|2696524_2697475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60280.1|2697585_2699034_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY60281.1|2699148_2699430_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60282.1|2699533_2700484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60283.1|2700728_2701442_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY60284.1|2701564_2701792_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY60285.1|2702086_2702725_-	DedA family protein	NA	NA	NA	NA	NA
AZY60286.1|2702797_2703868_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY60287.1|2703864_2704815_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60288.1|2705230_2705755_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY60289.1|2705758_2706028_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60290.1|2706226_2707288_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY60291.1|2707371_2709006_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY60292.1|2709007_2709811_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60293.1|2709839_2710799_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60294.1|2710802_2712317_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60295.1|2712353_2713358_-	peptidase M20	NA	NA	NA	NA	NA
AZY60296.1|2713365_2713614_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60297.1|2713788_2714259_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY60298.1|2714294_2714906_-	LysE family translocator	NA	NA	NA	NA	NA
AZY60299.1|2714936_2715560_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY60300.1|2715640_2717173_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY60301.1|2717207_2718449_-	MFS transporter	NA	NA	NA	NA	NA
AZY60302.1|2718492_2719524_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY60303.1|2719520_2720690_-	amine oxidase	NA	NA	NA	NA	NA
AZY60304.1|2720683_2721364_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY60305.1|2721525_2722368_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60306.1|2722530_2723502_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY60307.1|2723673_2724552_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY60308.1|2724574_2725645_-	FUSC family protein	NA	NA	NA	NA	NA
AZY60309.1|2725685_2726636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2782101	2854970	4105347	transposase,tRNA	Burkholderia_phage(20.0%)	58	NA	NA
AZY60353.1|2782101_2782518_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY60354.1|2782628_2783261_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY60355.1|2783289_2783733_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY60356.1|2783754_2784846_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60357.1|2784900_2785701_-	aldolase	NA	NA	NA	NA	NA
AZY60358.1|2785836_2786457_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY60359.1|2786596_2787070_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60360.1|2788209_2789160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60361.1|2797057_2801104_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY60362.1|2801416_2801998_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY60363.1|2801994_2803293_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY60364.1|2803372_2804401_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY60365.1|2804324_2804675_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60366.1|2804661_2805612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60367.1|2805608_2806559_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60368.1|2806875_2807481_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY60369.1|2807534_2808848_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY60370.1|2808922_2809393_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY60371.1|2809392_2810181_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY60372.1|2810191_2811844_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY60373.1|2811931_2812882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61578.1|2814043_2814550_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY60374.1|2814546_2815311_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY60375.1|2815326_2815611_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY60376.1|2815675_2816665_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY60377.1|2816836_2817766_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY60378.1|2817737_2818424_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY60379.1|2818457_2819003_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY60380.1|2819047_2820313_+	peptidase M48	NA	NA	NA	NA	NA
AZY60381.1|2820309_2821212_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY60382.1|2822393_2823338_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60383.1|2823432_2824950_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60384.1|2824991_2826620_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY60385.1|2826727_2827609_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60386.1|2830721_2831096_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY60387.1|2831120_2831459_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY60388.1|2831502_2833137_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY60389.1|2833175_2834522_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY61579.1|2834629_2836051_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY60390.1|2836120_2836705_-	nitroreductase	NA	NA	NA	NA	NA
AZY60391.1|2836807_2837758_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60392.1|2837892_2838999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60393.1|2839009_2840107_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY60394.1|2840251_2841457_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY60395.1|2841463_2841985_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY60396.1|2841981_2842473_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY60397.1|2842469_2842721_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY60398.1|2842701_2843187_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY60399.1|2843322_2846784_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60400.1|2846780_2847686_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY60401.1|2847695_2848127_-	lipoprotein	NA	NA	NA	NA	NA
AZY61580.1|2848373_2848877_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY60402.1|2848888_2850355_+	MFS transporter	NA	NA	NA	NA	NA
AZY60403.1|2850429_2851305_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61581.1|2851301_2852309_-	biotin synthase	NA	NA	NA	NA	NA
AZY60404.1|2852776_2853082_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY60405.1|2853172_2853763_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60406.1|2853953_2854970_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2858113	2924924	4105347	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY60409.1|2858113_2859064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60410.1|2859162_2860113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60411.1|2860109_2860904_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY60412.1|2860935_2861640_-	oxidoreductase	NA	NA	NA	NA	NA
AZY60413.1|2861714_2862515_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY60414.1|2862511_2862919_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY60415.1|2862915_2863557_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY60416.1|2863549_2865571_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY60417.1|2866810_2868142_+	MFS transporter	NA	NA	NA	NA	NA
AZY60418.1|2868138_2869089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60419.1|2870795_2871101_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60420.1|2871769_2872108_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY60421.1|2876661_2877264_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60422.1|2877360_2878650_+	MFS transporter	NA	NA	NA	NA	NA
AZY60423.1|2878707_2879439_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY60424.1|2879435_2880239_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY60425.1|2880235_2881324_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY60426.1|2881320_2882250_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY60427.1|2882398_2883544_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60428.1|2883565_2884516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60429.1|2884846_2888668_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY60430.1|2888824_2889493_-	lipoprotein	NA	NA	NA	NA	NA
AZY60431.1|2889497_2891171_-	MCE family protein	NA	NA	NA	NA	NA
AZY60432.1|2891189_2892509_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY60433.1|2892513_2894865_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY61582.1|2894884_2897053_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY60434.1|2897049_2902239_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY60435.1|2902328_2902643_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY60436.1|2902870_2903116_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY60437.1|2903210_2903729_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY60438.1|2903828_2905034_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY60439.1|2905149_2906547_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY60440.1|2906663_2907242_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY60441.1|2907314_2908706_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY60442.1|2908873_2909824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60443.1|2910104_2910725_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY60444.1|2910721_2911135_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY60445.1|2911131_2912175_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY60446.1|2912230_2912419_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60447.1|2912428_2913193_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY60448.1|2913283_2913940_+	adenylate kinase	NA	NA	NA	NA	NA
AZY60449.1|2914031_2914790_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY60450.1|2914815_2916417_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY60451.1|2916617_2917622_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY60452.1|2917722_2917986_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY60453.1|2918103_2918880_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY60454.1|2919470_2920421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60455.1|2922804_2923917_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY60456.1|2923973_2924924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	2955310	2994499	4105347	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY60485.1|2955310_2956261_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60486.1|2956247_2956493_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60487.1|2956381_2957278_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY60488.1|2959555_2961781_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY60489.1|2961945_2963034_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY60490.1|2962990_2963644_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY60491.1|2963691_2964489_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60492.1|2965020_2965971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60493.1|2966051_2967200_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY60494.1|2967256_2968207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60495.1|2968193_2968412_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60496.1|2968305_2968611_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY60497.1|2968639_2969074_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY60498.1|2969075_2970320_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY60499.1|2970316_2971027_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61584.1|2971041_2971953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60500.1|2972315_2972720_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60501.1|2972716_2973175_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60502.1|2973181_2974090_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61585.1|2974086_2974953_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY60503.1|2974939_2975767_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY60504.1|2975777_2976905_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY60505.1|2977982_2979221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60506.1|2979262_2980525_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60507.1|2980531_2981284_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY60508.1|2981335_2981521_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60509.1|2981796_2982261_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY60510.1|2982292_2982952_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY60511.1|2983096_2985205_+	AsmA family protein	NA	NA	NA	NA	NA
AZY60512.1|2985201_2986152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60513.1|2986255_2986876_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61586.1|2986979_2987720_+	oxidoreductase	NA	NA	NA	NA	NA
AZY60514.1|2988854_2989979_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60515.1|2990024_2990393_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60516.1|2990634_2991585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60517.1|2992620_2993163_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60518.1|2993367_2993562_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60519.1|2993548_2994499_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	3183419	3244449	4105347	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZY60670.1|3183419_3184370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60671.1|3184378_3184927_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZY60672.1|3184923_3185532_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY60673.1|3185714_3186185_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY60674.1|3186191_3187451_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY60675.1|3187503_3188316_-	oxidoreductase	NA	NA	NA	NA	NA
AZY60676.1|3188430_3188985_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY60677.1|3188994_3189984_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60678.1|3190163_3190883_-	VOC family protein	NA	NA	NA	NA	NA
AZY60679.1|3190899_3193635_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZY60680.1|3193814_3194801_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZY60681.1|3194842_3195337_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZY60682.1|3195448_3196372_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZY60683.1|3196600_3197785_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZY60684.1|3197973_3199200_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZY60685.1|3199204_3200026_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZY60686.1|3200038_3200989_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZY60687.1|3200985_3202392_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZY60688.1|3202388_3203462_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZY60689.1|3203458_3204652_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZY60690.1|3204648_3206181_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZY60691.1|3206177_3207347_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZY60692.1|3207336_3210174_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZY61602.1|3210170_3211871_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZY60693.1|3211897_3212176_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZY60694.1|3212175_3213270_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZY60695.1|3213278_3213770_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZY60696.1|3214509_3216318_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZY60697.1|3216357_3217437_-	dihydroorotase	NA	NA	NA	NA	NA
AZY60698.1|3217433_3218627_-	amidohydrolase	NA	NA	NA	NA	NA
AZY60699.1|3218776_3219055_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZY60700.1|3219384_3219777_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61603.1|3226501_3226978_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY60701.1|3227130_3228243_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZY60702.1|3228310_3228871_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZY60703.1|3228894_3229227_-	cytochrome C	NA	NA	NA	NA	NA
AZY60704.1|3229210_3230899_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY60705.1|3231018_3231807_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZY60706.1|3232514_3233465_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60707.1|3233909_3234221_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY60708.1|3234220_3234751_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60709.1|3234913_3235864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60710.1|3235962_3236913_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60711.1|3237202_3237667_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY60712.1|3237681_3239187_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY60713.1|3239440_3241048_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY60714.1|3241103_3242009_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY60715.1|3242449_3243400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60716.1|3243498_3244449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	3266174	3304589	4105347	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZY60738.1|3266174_3266510_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY60739.1|3266509_3267352_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY60740.1|3267450_3268401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60741.1|3268465_3269437_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60742.1|3269500_3270520_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY61606.1|3270521_3271895_-	MFS transporter	NA	NA	NA	NA	NA
AZY60743.1|3272172_3272853_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY60744.1|3272865_3274992_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY60745.1|3274988_3276083_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY60746.1|3276097_3277357_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY60747.1|3277376_3279101_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY60748.1|3279339_3280092_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY60749.1|3280230_3281181_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61607.1|3281493_3282972_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY60750.1|3282978_3284088_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY60751.1|3284099_3284780_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY60752.1|3284801_3285557_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY61608.1|3285692_3286577_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY60753.1|3286664_3287246_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60754.1|3287338_3287461_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60755.1|3287506_3287806_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY61609.1|3287957_3288383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60756.1|3290589_3291093_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY60757.1|3291108_3292059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60758.1|3292045_3292243_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60759.1|3292586_3293360_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60760.1|3293492_3294503_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60761.1|3294654_3296310_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY60762.1|3296364_3296706_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY60763.1|3296719_3298159_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY60764.1|3298291_3299107_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60765.1|3299125_3299314_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60766.1|3299300_3300251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60767.1|3301638_3302586_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60768.1|3302812_3303553_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60769.1|3303638_3304589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	3379996	3433737	4105347	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY60821.1|3379996_3380947_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60822.1|3381351_3381996_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY60823.1|3382020_3382605_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY60824.1|3382705_3383323_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY60825.1|3383325_3385041_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY60826.1|3385037_3385346_-	urease subunit beta	NA	NA	NA	NA	NA
AZY60827.1|3385362_3385998_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY60828.1|3386024_3386327_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY60829.1|3386427_3387282_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY60830.1|3387863_3388136_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY60831.1|3388553_3388961_-	GFA family protein	NA	NA	NA	NA	NA
AZY60832.1|3389330_3390125_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60833.1|3390225_3391461_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY60834.1|3391529_3392546_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60835.1|3392542_3393934_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY60836.1|3393930_3395127_+	MFS transporter	NA	NA	NA	NA	NA
AZY60837.1|3395123_3396662_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY60838.1|3396658_3397918_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60839.1|3399858_3400809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60840.1|3401575_3402670_-	CoA transferase	NA	NA	NA	NA	NA
AZY60841.1|3402662_3403997_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY60842.1|3403950_3404634_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60843.1|3404659_3405823_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY60844.1|3405819_3406821_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY60845.1|3406820_3407693_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY60846.1|3407689_3408439_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY60847.1|3408435_3409227_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY60848.1|3409223_3410363_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60849.1|3410671_3411424_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY60850.1|3411457_3412240_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY60851.1|3412243_3412633_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY60852.1|3413772_3414636_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY60853.1|3414671_3415760_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60854.1|3415756_3416707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60855.1|3416693_3417062_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60856.1|3417060_3420039_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60857.1|3420965_3421844_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY60858.1|3423792_3424743_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60859.1|3424739_3425207_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY60860.1|3425249_3426020_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY60861.1|3426040_3426841_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY60862.1|3426851_3428261_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY60863.1|3428355_3429141_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY60864.1|3429380_3430397_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY60865.1|3430504_3430897_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY60866.1|3431034_3431715_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY60867.1|3431719_3432718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60868.1|3432786_3433737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	3439892	3499192	4105347	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY60872.1|3439892_3441656_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY60873.1|3441767_3442646_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY60874.1|3442758_3443574_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY60875.1|3443577_3443829_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY60876.1|3443913_3444930_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY60877.1|3445260_3445482_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60878.1|3447842_3448760_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY60879.1|3449257_3450466_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60880.1|3450545_3452117_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY60881.1|3452234_3453170_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY60882.1|3453358_3454303_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY60883.1|3454371_3454587_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60884.1|3454870_3460588_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY60885.1|3460593_3461721_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY60886.1|3461776_3462403_+	aminotransferase	NA	NA	NA	NA	NA
AZY60887.1|3462674_3463691_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY60888.1|3463786_3464497_-	oxidoreductase	NA	NA	NA	NA	NA
AZY61613.1|3464493_3465483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY60889.1|3465614_3467210_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY60890.1|3467212_3467950_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60891.1|3468105_3468978_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY60892.1|3469246_3470467_+	MFS transporter	NA	NA	NA	NA	NA
AZY60893.1|3470463_3471123_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY60894.1|3471194_3471827_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY60895.1|3471856_3472375_+	flavin reductase	NA	NA	NA	NA	NA
AZY60896.1|3472385_3473495_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY60897.1|3473541_3474396_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY60898.1|3474397_3475300_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60899.1|3476522_3477473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60900.1|3479229_3480219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60901.1|3480394_3481183_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY60902.1|3481179_3482211_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY60903.1|3482229_3482793_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY60904.1|3482848_3484369_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY60905.1|3484632_3485337_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY60906.1|3485344_3486082_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY60907.1|3486187_3486562_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY60908.1|3486604_3487894_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60909.1|3487890_3489060_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY60910.1|3489056_3489896_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY60911.1|3489955_3490891_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY60912.1|3490903_3491854_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60913.1|3491952_3492915_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY60914.1|3492946_3493306_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY60915.1|3493430_3494333_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY60916.1|3494334_3496107_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY60917.1|3496141_3496918_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY60918.1|3498241_3499192_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025524	Bordetella pertussis strain I705 chromosome, complete genome	4105347	3514130	3572203	4105347	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY60930.1|3514130_3515081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60931.1|3515209_3516343_-	peptidase	NA	NA	NA	NA	NA
AZY60932.1|3516386_3517292_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY60933.1|3517294_3518995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY60934.1|3518991_3519912_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60935.1|3519919_3520897_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY60936.1|3520955_3521990_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY60937.1|3523964_3524201_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60938.1|3524327_3525191_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY60939.1|3525279_3526101_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY60940.1|3526180_3526918_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY60941.1|3526914_3527907_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY60942.1|3528020_3528683_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60943.1|3528727_3529876_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY60944.1|3532199_3533150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60945.1|3533490_3534441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60946.1|3534539_3535490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60947.1|3535786_3536284_+	hypothetical protein	NA	NA	NA	NA	NA
AZY60948.1|3536326_3538102_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY61616.1|3538148_3538976_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY60949.1|3538982_3539717_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY60950.1|3540886_3541681_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY60951.1|3541970_3542561_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY60952.1|3542594_3543923_-	amidase	NA	NA	NA	NA	NA
AZY60953.1|3543997_3545143_-	transporter	NA	NA	NA	NA	NA
AZY60954.1|3545254_3546253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60955.1|3546215_3546650_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY60956.1|3548166_3549051_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY60957.1|3549047_3550253_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY60958.1|3550249_3551110_-	endonuclease	NA	NA	NA	NA	NA
AZY60959.1|3551222_3553013_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY60960.1|3553053_3553719_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY60961.1|3553719_3554028_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY61617.1|3554193_3555480_-	hypothetical protein	NA	NA	NA	NA	NA
AZY60962.1|3556913_3557864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY60963.1|3559815_3561030_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY60964.1|3561135_3562125_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY60965.1|3562121_3562730_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY60966.1|3562742_3563372_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY60967.1|3563368_3563989_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY60968.1|3564020_3564812_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY60969.1|3565654_3566119_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY60970.1|3566137_3567064_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY60971.1|3567117_3568404_-	cytochrome c	NA	NA	NA	NA	NA
AZY60972.1|3569334_3570207_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY60973.1|3570203_3571154_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY60974.1|3571252_3572203_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
