The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	0	65104	4111618	protease,tRNA,transposase	Natrialba_phage(12.5%)	56	NA	NA
AZY61642.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY61643.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY61644.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY61645.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY61646.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY61647.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY61648.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY61649.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY61650.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY61651.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY61652.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY61653.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY61654.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY61655.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY65014.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY61656.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61657.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY61658.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY61659.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61660.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61661.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
AZY61662.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61663.1|30190_31417_-	thiolase family protein	NA	NA	NA	NA	NA
AZY61664.1|31413_31911_-	dehydratase	NA	NA	NA	NA	NA
AZY65015.1|32118_33027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61665.1|33212_34055_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY61666.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY61667.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61668.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
AZY61669.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY61670.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY61671.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY61672.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY61673.1|42367_43261_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY61674.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY61675.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY61676.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY61677.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61678.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61679.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY61680.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61681.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY61682.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY61683.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61684.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AZY61685.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY61686.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY61687.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY61688.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY61689.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY61690.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61691.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY61692.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY61693.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65016.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61694.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	70134	124171	4111618	tRNA,transposase	Planktothrix_phage(20.0%)	52	NA	NA
AZY61699.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61700.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY61701.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY61702.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY61703.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY61704.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65017.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61705.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY61706.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65018.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61707.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY61708.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY61709.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY61710.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZY61711.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY61712.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY61713.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY61714.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY61715.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY61716.1|91842_92895_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY61717.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY61718.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY61719.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61720.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY61721.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY61722.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY61723.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY61724.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61725.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY61726.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY61727.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY61728.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY61729.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY61730.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY61731.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY61732.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY61733.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY61734.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61735.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY61736.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY61737.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY61738.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY65019.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY61739.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65020.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY61740.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY61741.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY61742.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY61743.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY61744.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY61745.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61746.1|123220_124171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	166992	227498	4111618	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY61778.1|166992_167943_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61779.1|169386_170289_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61780.1|170266_170896_-	LemA family protein	NA	NA	NA	NA	NA
AZY61781.1|171226_172609_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY61782.1|172642_173272_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY61783.1|173320_174928_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY61784.1|174952_175636_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65025.1|175717_176194_-	bacterioferritin	NA	NA	NA	NA	NA
AZY61785.1|176400_177351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61786.1|178466_178994_+	lipoprotein	NA	NA	NA	NA	NA
AZY61787.1|179085_179901_+	lipoprotein	NA	NA	NA	NA	NA
AZY61788.1|179961_180696_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY61789.1|180733_182812_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY61790.1|183061_183334_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61791.1|183432_184521_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY61792.1|184524_186429_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY61793.1|186425_190100_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY61794.1|190160_190724_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY61795.1|190731_191154_-	glyoxalase	NA	NA	NA	NA	NA
AZY61796.1|191181_191601_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY65026.1|191629_192076_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY61797.1|192202_192700_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61798.1|192854_195125_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY61799.1|195168_196401_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY61800.1|196499_197450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61801.1|197495_198188_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY61802.1|198184_199078_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY61803.1|199472_200573_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY61804.1|200654_201029_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY61805.1|201088_203953_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY61806.1|204097_204838_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61807.1|204907_206119_+	CoA transferase	NA	NA	NA	NA	NA
AZY61808.1|206147_207116_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61809.1|207729_208680_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61810.1|208836_209160_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY61811.1|209264_210314_-	cyclase	NA	NA	NA	NA	NA
AZY61812.1|210310_211135_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY61813.1|211135_211432_-	YciI family protein	NA	NA	NA	NA	NA
AZY61814.1|211457_211733_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY61815.1|211789_212434_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY61816.1|212433_213120_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY65027.1|213249_214101_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61817.1|214151_214877_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY61818.1|214908_216258_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY61819.1|216369_217302_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY61820.1|217759_220555_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY61821.1|221148_224091_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY61822.1|224162_224882_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY61823.1|224920_225469_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY61824.1|225623_226523_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY61825.1|226547_227498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	235430	289017	4111618	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
AZY61833.1|235430_236381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61834.1|236467_237418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61835.1|237414_238365_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61836.1|238463_239261_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY61837.1|240210_240621_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY61838.1|241642_242386_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61839.1|242429_243473_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY61840.1|243643_245746_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61841.1|247156_248113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61842.1|248131_248623_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY61843.1|248619_249975_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY61844.1|249975_250674_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY61845.1|250670_251372_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY61846.1|251624_252674_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY61847.1|252779_253721_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY61848.1|253717_255607_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY61849.1|255693_256332_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65028.1|256474_257719_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY61850.1|257790_258327_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY61851.1|258478_259870_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY61852.1|259886_260867_-	AEC family transporter	NA	NA	NA	NA	NA
AZY61853.1|261002_261986_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY61854.1|262050_262950_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61855.1|263056_264811_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY61856.1|264818_265943_-	CoA transferase	NA	NA	NA	NA	NA
AZY61857.1|265956_266937_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61858.1|267667_268618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61859.1|269177_269723_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61860.1|269806_271426_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY61861.1|271441_272596_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY61862.1|272609_272735_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY61863.1|272731_274483_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY61864.1|274479_276159_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY61865.1|276194_276770_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY61866.1|277912_278191_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY65029.1|279234_280185_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61867.1|280461_280623_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY61868.1|280630_280771_+	hypothetical protein	NA	NA	NA	NA	NA
AZY61869.1|281289_281739_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY61870.1|281748_282360_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY61871.1|282518_283373_-	cytochrome c1	NA	NA	NA	NA	NA
AZY61872.1|283392_284775_-	cytochrome b	NA	NA	NA	NA	NA
AZY65030.1|284839_285481_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY61873.1|285620_286079_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY61874.1|286103_286880_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY65031.1|286933_288070_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY61875.1|288066_289017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	392950	451507	4111618	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY61974.1|392950_393901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61975.1|394037_394955_+	reductase	NA	NA	NA	NA	NA
AZY61976.1|394951_395200_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY61977.1|395196_396402_+	CoA transferase	NA	NA	NA	NA	NA
AZY61978.1|396474_397470_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61979.1|397492_398713_-	CoA transferase	NA	NA	NA	NA	NA
AZY61980.1|398709_399354_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61981.1|401084_401894_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65037.1|402111_403152_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY61982.1|404159_404861_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61983.1|404909_405680_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY61984.1|405676_406918_-	CoA transferase	NA	NA	NA	NA	NA
AZY61985.1|407022_408729_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY61986.1|408725_409622_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY61987.1|409662_411252_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY61988.1|411301_412294_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61989.1|412362_412962_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65038.1|413422_414400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY61990.1|414478_415429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY61991.1|415517_416432_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY61992.1|416428_417088_+	LysE family translocator	NA	NA	NA	NA	NA
AZY61993.1|417177_418101_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY61994.1|418106_418562_-	hypothetical protein	NA	NA	NA	NA	NA
AZY61995.1|418558_419662_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY65039.1|419581_419890_+	GtrA family protein	NA	NA	NA	NA	NA
AZY61996.1|419849_421469_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY61997.1|421465_422524_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY61998.1|422653_423148_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY61999.1|423240_424218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62000.1|424413_425619_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY62001.1|425615_427127_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65040.1|427142_428456_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY62002.1|428646_428826_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62003.1|429235_429970_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY62004.1|432414_433365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62005.1|433496_433895_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY62006.1|434305_434776_-	universal stress protein	NA	NA	NA	NA	NA
AZY62007.1|434864_435209_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY62008.1|435308_436709_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY62009.1|438497_439016_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY62010.1|439126_439882_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY62011.1|440077_441310_+	CoA transferase	NA	NA	NA	NA	NA
AZY62012.1|441302_442088_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY62013.1|442154_443126_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62014.1|443136_444114_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62015.1|444239_445412_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY62016.1|445438_446467_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY62017.1|446532_447726_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY62018.1|449507_450458_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62019.1|450556_451507_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	638882	738993	4111618	terminase,tRNA,transposase,tail	uncultured_Caudovirales_phage(13.33%)	108	NA	NA
AZY62180.1|638882_639833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62181.1|639931_640732_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62182.1|640793_641177_+	thioredoxin	NA	NA	NA	NA	NA
AZY62183.1|641188_642622_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY62184.1|642828_643158_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY65048.1|643160_643829_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY62185.1|644092_645013_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY62186.1|645059_645272_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY62187.1|645294_645717_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY62188.1|645733_646834_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY62189.1|646930_648448_-	peptidase	NA	NA	NA	NA	NA
AZY62190.1|648523_649363_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY62191.1|649384_650266_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY62192.1|650347_651442_-	porin	NA	NA	NA	NA	NA
AZY62193.1|651735_652686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65049.1|652760_653702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62194.1|653785_654145_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62195.1|654526_655564_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62196.1|655880_657221_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY62197.1|657230_657683_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62198.1|657779_658961_+	monooxygenase	NA	NA	NA	NA	NA
AZY62199.1|659020_660052_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY62200.1|660092_660332_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY62201.1|660401_661991_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY62202.1|661990_662539_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY62203.1|662619_663192_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY62204.1|663210_664122_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY62205.1|664195_665164_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY62206.1|665286_666360_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY62207.1|666364_668185_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY62208.1|669298_669634_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY62209.1|669767_670418_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY62210.1|670439_671858_-	amidase	NA	NA	NA	NA	NA
AZY62211.1|671927_672683_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65050.1|672651_673410_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY62212.1|673420_674302_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY62213.1|674318_675026_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY62214.1|675028_675787_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY62215.1|675996_677739_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY62216.1|677731_678256_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY62217.1|678295_679090_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62218.1|679257_680331_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62219.1|680429_681380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62220.1|681631_681844_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65051.1|681909_682521_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY62221.1|683000_683321_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62222.1|683313_684012_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62223.1|684026_684248_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62224.1|684265_685216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65052.1|685891_686341_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY62225.1|686327_687605_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY62226.1|687607_689026_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY65053.1|689054_690110_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY62227.1|690115_690358_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY62228.1|690480_691083_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY62229.1|691511_692462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62230.1|692479_693127_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY62231.1|693136_693388_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62232.1|693450_693933_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY62233.1|693934_694135_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62234.1|694134_694530_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY62235.1|694526_694925_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY62236.1|694921_695344_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62237.1|695351_695852_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY62238.1|696106_696625_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY62239.1|696634_696964_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY62240.1|696981_697272_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY62241.1|697297_699910_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY62242.1|699919_700279_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62243.1|700346_700880_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY62244.1|700876_701266_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY62245.1|701258_705215_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY62246.1|705219_705636_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62247.1|705854_706118_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY62248.1|706117_706930_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62249.1|706934_707177_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62250.1|707155_707707_+	lysozyme	NA	NA	NA	NA	NA
AZY62251.1|707688_708222_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY62252.1|708218_708500_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62253.1|708842_709043_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62254.1|709049_709721_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY62255.1|710076_710763_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY62256.1|710743_711316_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY62257.1|711381_713112_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY62258.1|713164_713593_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY62259.1|713595_714276_+	protein TolQ	NA	NA	NA	NA	NA
AZY62260.1|714275_714734_+	protein TolR	NA	NA	NA	NA	NA
AZY62261.1|714770_715745_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY62262.1|715761_717078_+	protein TolB	NA	NA	NA	NA	NA
AZY62263.1|717109_717607_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY62264.1|717693_718383_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY62265.1|718382_719432_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY62266.1|719428_720223_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY62267.1|720391_720742_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62268.1|720717_721275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62269.1|722199_722418_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62270.1|722404_723355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65054.1|725633_726722_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62271.1|726724_728167_-	pyruvate kinase	NA	NA	NA	NA	NA
AZY62272.1|728271_729417_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY62273.1|729448_730246_-	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY62274.1|730270_731830_-	chaperone SurA	NA	NA	NA	NA	NA
AZY62275.1|731826_734199_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY62276.1|734308_735412_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY62277.1|735411_736104_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY62278.1|736247_736949_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62279.1|736933_737311_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY62280.1|738042_738993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	857236	906500	4111618	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY62372.1|857236_858187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65058.1|858159_858759_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62373.1|858760_859195_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY62374.1|859191_859626_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62375.1|859609_860413_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY62376.1|860429_861245_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY62377.1|861241_862057_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY62378.1|862203_862905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62379.1|862932_864891_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY62380.1|864973_865924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62381.1|866144_866813_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY62382.1|866936_868043_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY62383.1|868055_871169_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY62384.1|871165_872659_+	RND transporter	NA	NA	NA	NA	NA
AZY62385.1|872673_873345_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY62386.1|873388_873883_-	azurin	NA	NA	NA	NA	NA
AZY62387.1|874023_874671_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY65059.1|874774_876823_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY62388.1|876819_878832_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY62389.1|878857_880192_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY62390.1|880300_881293_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62391.1|881359_883444_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY62392.1|883468_884440_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62393.1|884568_885570_-	peptidase M14	NA	NA	NA	NA	NA
AZY62394.1|885603_886845_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY62395.1|886925_887849_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY62396.1|887926_888751_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY65060.1|888947_889964_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY62397.1|890160_891144_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62398.1|892742_894131_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY62399.1|894161_895151_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62400.1|895261_896494_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY62401.1|896775_897576_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62402.1|897598_899830_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY62403.1|900617_901064_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY62404.1|901085_901832_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY62405.1|901975_902953_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY62406.1|903586_904198_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY62407.1|904191_905409_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY62408.1|905549_906500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	937809	1001402	4111618	transposase	Bacillus_virus(15.38%)	59	NA	NA
AZY62433.1|937809_938760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62434.1|938812_939034_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62435.1|939193_939406_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62436.1|939525_940644_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY62437.1|940740_940956_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62438.1|941149_941401_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62439.1|941513_942464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62440.1|942460_942844_-	ferredoxin	NA	NA	NA	NA	NA
AZY62441.1|942898_944716_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY65062.1|944862_945690_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY62442.1|945735_946716_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY62443.1|946712_946925_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62444.1|946921_948103_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY62445.1|948266_949001_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY62446.1|949002_951615_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY62447.1|951750_953664_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY62448.1|954279_954690_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY62449.1|954787_955873_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY62450.1|955971_956922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62451.1|956918_957893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY62452.1|958017_958929_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY65063.1|959205_959598_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY62453.1|959727_960678_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62454.1|960707_960890_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY62455.1|960928_961186_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62456.1|961662_962844_-	MFS transporter	NA	NA	NA	NA	NA
AZY62457.1|963059_963737_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY62458.1|963733_964507_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY62459.1|964584_965166_-	OmpA family protein	NA	NA	NA	NA	NA
AZY62460.1|965536_968218_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY62461.1|968217_969351_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY62462.1|969343_970429_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY62463.1|970515_971415_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY62464.1|971411_972740_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY62465.1|972754_973426_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY62466.1|973598_975329_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY62467.1|975330_975690_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY62468.1|975881_976196_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY62469.1|976238_977459_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY62470.1|977455_978397_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY62471.1|978393_979383_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY62472.1|979417_980002_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY62473.1|980100_981051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62474.1|981131_982043_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY62475.1|982103_983249_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY62476.1|983268_984183_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY62477.1|984254_985004_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY62478.1|985003_985933_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY62479.1|986176_988003_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY62480.1|988085_988727_+	peroxiredoxin	NA	NA	NA	NA	NA
AZY62481.1|988916_989951_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62482.1|991787_992852_+	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY65064.1|993649_994558_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY62483.1|996045_997320_+	radical SAM protein	NA	NA	NA	NA	NA
AZY62484.1|997473_997854_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62485.1|997861_998734_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY62486.1|999039_999420_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY62487.1|999630_1000356_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY62488.1|1000451_1001402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1040073	1089011	4111618	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY62511.1|1040073_1041207_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62512.1|1041483_1042032_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY62513.1|1042050_1042536_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY62514.1|1042713_1043652_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY62515.1|1043654_1043972_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62516.1|1044017_1044962_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62517.1|1046642_1047293_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY62518.1|1047346_1047682_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62519.1|1047678_1048539_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY62520.1|1048555_1048837_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62521.1|1048910_1049174_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY62522.1|1049417_1050368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62523.1|1050666_1051404_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY62524.1|1051839_1052163_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY62525.1|1052197_1052758_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY62526.1|1052878_1053754_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY62527.1|1053766_1054714_+	motility protein MotB	NA	NA	NA	NA	NA
AZY62528.1|1054815_1055109_+	response regulator	NA	NA	NA	NA	NA
AZY62529.1|1055135_1057193_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY62530.1|1057207_1057708_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY62531.1|1057781_1059488_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY62532.1|1060351_1061404_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY62533.1|1061456_1061846_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY62534.1|1061854_1062487_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY65068.1|1062586_1063603_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY65069.1|1064433_1065441_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY62535.1|1065437_1067081_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY62536.1|1067077_1067980_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY62537.1|1068105_1068579_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY62538.1|1068568_1069591_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY62539.1|1069587_1071015_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY65070.1|1071952_1072969_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY62540.1|1073301_1074237_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY62541.1|1074286_1076167_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY62542.1|1076233_1076578_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY62543.1|1076722_1077859_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY62544.1|1077855_1078929_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY62545.1|1079086_1080523_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY65071.1|1080613_1081255_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY65072.1|1081590_1082607_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY62546.1|1082939_1085687_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY65073.1|1085753_1087175_-	siroheme synthase	NA	NA	NA	NA	NA
AZY62547.1|1087438_1088155_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62548.1|1088239_1088557_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY62549.1|1088597_1089011_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 10
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1320044	1385472	4111618	transposase	Planktothrix_phage(33.33%)	55	NA	NA
AZY62729.1|1320044_1320995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62730.1|1321763_1322402_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY65085.1|1323291_1323738_+	glutamate racemase	NA	NA	NA	NA	NA
AZY62731.1|1323819_1324521_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY62732.1|1324521_1325289_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY62733.1|1325285_1326524_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY62734.1|1326523_1327450_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY62735.1|1327552_1328668_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62736.1|1328683_1329634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62737.1|1329987_1330569_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY62738.1|1330565_1331399_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY65086.1|1331609_1332923_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY62739.1|1333099_1333981_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY62740.1|1334000_1334852_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY62741.1|1334904_1335993_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY62742.1|1336103_1337231_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65087.1|1337465_1338077_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY62743.1|1338175_1339126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62744.1|1339347_1339725_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY65088.1|1339872_1340370_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY62745.1|1340366_1340894_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY62746.1|1341027_1341843_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62747.1|1341855_1343037_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY62748.1|1343084_1343978_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY65089.1|1344104_1344575_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62749.1|1344700_1345528_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY62750.1|1345556_1346333_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY62751.1|1346329_1346623_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY62752.1|1346619_1347084_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY62753.1|1347095_1347881_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY62754.1|1347906_1348407_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY62755.1|1348489_1349668_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY62756.1|1351295_1351631_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY62757.1|1351818_1353267_+	CoA transferase	NA	NA	NA	NA	NA
AZY62758.1|1353324_1353669_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY62759.1|1353775_1354315_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY62760.1|1354407_1355358_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62761.1|1355456_1356407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62762.1|1356393_1356876_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62763.1|1357145_1357577_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62764.1|1357758_1358163_-	DoxX family protein	NA	NA	NA	NA	NA
AZY62765.1|1359399_1359723_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62766.1|1359725_1360613_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY62767.1|1360645_1361071_-	universal stress protein	NA	NA	NA	NA	NA
AZY62768.1|1361142_1361496_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62769.1|1361735_1362242_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62770.1|1362280_1363612_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY62771.1|1363671_1364487_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY62772.1|1364483_1365338_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY65090.1|1368400_1370944_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY62773.1|1372310_1374065_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY62774.1|1374061_1376182_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY62775.1|1376186_1378382_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY65091.1|1378378_1381720_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY62776.1|1384521_1385472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1450070	1505558	4111618	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZY62826.1|1450070_1451021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62827.1|1452222_1452669_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY62828.1|1452661_1454137_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY62829.1|1454133_1454889_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY62830.1|1454881_1455892_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY62831.1|1455881_1457558_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY62832.1|1457870_1458203_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY62833.1|1458216_1458612_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62834.1|1458621_1458948_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY62835.1|1458944_1459271_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY62836.1|1459197_1460220_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY62837.1|1460216_1460597_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY62838.1|1460614_1461043_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY62839.1|1461050_1462424_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY65097.1|1462564_1462942_-	flagellar protein	NA	NA	NA	NA	NA
AZY62840.1|1463204_1464512_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY62841.1|1464572_1465403_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY62842.1|1465399_1465888_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY62843.1|1465929_1467450_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY65098.1|1467493_1467970_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY62844.1|1468773_1471371_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY62845.1|1471400_1472222_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY62846.1|1472948_1473698_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY62847.1|1473830_1474760_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY62848.1|1474857_1475574_+	UMP kinase	NA	NA	NA	NA	NA
AZY62849.1|1475588_1476149_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY62850.1|1476186_1477080_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY62851.1|1477099_1477957_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY62852.1|1477953_1479153_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY62853.1|1479192_1480527_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY62854.1|1480579_1482916_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY65099.1|1483041_1483605_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY62855.1|1483613_1484705_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY62856.1|1484776_1485232_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY62857.1|1485232_1486027_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY62858.1|1486023_1487205_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY62859.1|1487191_1487797_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY62860.1|1487793_1488567_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY62861.1|1488578_1489406_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY62862.1|1489567_1491931_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY62863.1|1491998_1492718_-	GMP synthase	NA	NA	NA	NA	NA
AZY62864.1|1492841_1493267_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY62865.1|1493301_1494252_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62866.1|1494369_1495296_+	paraslipin	NA	NA	NA	NA	NA
AZY62867.1|1495361_1496519_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY62868.1|1496499_1496967_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY62869.1|1497114_1498065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62870.1|1498081_1498516_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY62871.1|1498505_1498856_+	RnfH family protein	NA	NA	NA	NA	NA
AZY62872.1|1499052_1500207_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY62873.1|1500203_1501376_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY62874.1|1501423_1502317_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY62875.1|1502362_1502800_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY62876.1|1502859_1503549_+	VIT family protein	NA	NA	NA	NA	NA
AZY62877.1|1503558_1504509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62878.1|1504607_1505558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1544881	1602963	4111618	protease,tRNA,transposase	Planktothrix_phage(15.38%)	60	NA	NA
AZY62911.1|1544881_1545694_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY62912.1|1545838_1546933_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62913.1|1547144_1547774_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62914.1|1547776_1549444_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY62915.1|1549458_1550115_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY62916.1|1550594_1551545_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62917.1|1551571_1552345_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY62918.1|1552356_1553598_+	MFS transporter	NA	NA	NA	NA	NA
AZY62919.1|1555379_1556330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62920.1|1556361_1557459_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY62921.1|1557455_1558406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62922.1|1558827_1559220_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62923.1|1559225_1560002_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY62924.1|1560389_1562339_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY62925.1|1562359_1562905_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY62926.1|1563041_1563998_+	glutathione synthetase	NA	NA	NA	NA	NA
AZY62927.1|1564008_1564407_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY62928.1|1564522_1564792_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY62929.1|1564913_1566608_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY62930.1|1566772_1566997_-	hypothetical protein	NA	NA	NA	NA	NA
AZY62931.1|1567595_1568546_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY62932.1|1568587_1569748_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62933.1|1569908_1570829_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY62934.1|1570841_1571483_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY62935.1|1571479_1572151_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY62936.1|1572147_1572918_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY62937.1|1573016_1573967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY62938.1|1574183_1574588_-	GFA family protein	NA	NA	NA	NA	NA
AZY62939.1|1574661_1575852_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY62940.1|1575885_1576212_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY62941.1|1576234_1576750_-	transporter	NA	NA	NA	NA	NA
AZY62942.1|1576808_1578035_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY62943.1|1578212_1579343_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY62944.1|1579577_1580159_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY62945.1|1580295_1581360_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY62946.1|1581444_1581891_-	GFA family protein	NA	NA	NA	NA	NA
AZY62947.1|1582115_1582997_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY62948.1|1583051_1583303_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY62949.1|1583305_1583707_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY62950.1|1583726_1583963_+	hypothetical protein	NA	NA	NA	NA	NA
AZY62951.1|1583970_1584450_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY62952.1|1584635_1585115_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY62953.1|1585117_1586308_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY62954.1|1586312_1587365_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY62955.1|1587501_1588524_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY62956.1|1588615_1589452_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY62957.1|1589644_1590550_+	agmatinase	NA	NA	NA	NA	NA
AZY62958.1|1590576_1591368_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY62959.1|1591390_1592083_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY62960.1|1592104_1592857_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY62961.1|1592985_1594545_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY62962.1|1594576_1595122_+	acyl dehydratase	NA	NA	NA	NA	NA
AZY62963.1|1595259_1596516_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY62964.1|1596532_1598227_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY62965.1|1598384_1599272_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY62966.1|1599309_1600242_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY65101.1|1600255_1600744_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY62967.1|1600861_1601440_+|protease	protease	protease	NA	NA	NA	NA
AZY62968.1|1601512_1601914_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY62969.1|1602012_1602963_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1658163	1729317	4111618	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY63016.1|1658163_1659114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63017.1|1659135_1660356_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY63018.1|1660541_1661954_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY63019.1|1662017_1663085_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY63020.1|1663081_1664572_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY65104.1|1664581_1665526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63021.1|1665685_1666384_+	pirin family protein	NA	NA	NA	NA	NA
AZY63022.1|1666461_1667367_+	pirin family protein	NA	NA	NA	NA	NA
AZY63023.1|1667386_1668337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63024.1|1668435_1669230_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY63025.1|1669234_1670905_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY63026.1|1671028_1672078_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63027.1|1672399_1673176_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY63028.1|1673240_1674143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63029.1|1675436_1676240_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY63030.1|1678933_1679320_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY63031.1|1679335_1681426_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY63032.1|1681477_1682431_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY65105.1|1682445_1683333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63033.1|1683470_1684997_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY65106.1|1685095_1685596_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY63034.1|1685919_1687875_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY63035.1|1688042_1690127_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63036.1|1690153_1690939_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY63037.1|1691794_1692565_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY63038.1|1692564_1693305_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY63039.1|1693346_1694516_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY63040.1|1694547_1696632_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY63041.1|1696628_1697519_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY63042.1|1697515_1698613_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY63043.1|1698635_1699925_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY63044.1|1699936_1700962_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY63045.1|1700958_1703016_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY63046.1|1703029_1704205_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY63047.1|1704286_1705237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63048.1|1705295_1706069_+	oxidoreductase	NA	NA	NA	NA	NA
AZY63049.1|1706061_1707618_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY63050.1|1707614_1708565_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63051.1|1709891_1710494_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63052.1|1710733_1711435_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY63053.1|1711428_1712211_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY63054.1|1712395_1713346_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63055.1|1713444_1714182_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY63056.1|1714371_1715130_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY63057.1|1715176_1716166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY63058.1|1716343_1717312_-	transporter	NA	NA	NA	NA	NA
AZY63059.1|1718851_1719820_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY63060.1|1719828_1720770_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY63061.1|1721243_1722254_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65107.1|1722244_1723759_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY63062.1|1723755_1725102_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65108.1|1725104_1726139_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY63063.1|1726188_1727814_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY63064.1|1728366_1729317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	1750108	1811456	4111618	tRNA,transposase	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY63078.1|1750108_1751059_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65114.1|1751352_1752075_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY63079.1|1752513_1753701_-	MFS transporter	NA	NA	NA	NA	NA
AZY63080.1|1753704_1754085_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63081.1|1755804_1756776_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY63082.1|1756789_1757503_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY63083.1|1757507_1758425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63084.1|1758531_1758828_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63085.1|1758926_1759877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63086.1|1761035_1763969_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY63087.1|1763968_1764313_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY63088.1|1764309_1765938_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY63089.1|1765934_1766414_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY63090.1|1766410_1766695_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY63091.1|1766691_1767018_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY63092.1|1767173_1768124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63093.1|1768167_1768710_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63094.1|1768807_1769656_+	hydrolase	NA	NA	NA	NA	NA
AZY63095.1|1769648_1770155_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY63096.1|1770151_1771153_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY63097.1|1771165_1771960_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY63098.1|1772008_1773910_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY63099.1|1773906_1774530_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63100.1|1774656_1775781_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63101.1|1776098_1777766_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY63102.1|1777921_1778698_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY63103.1|1778782_1779781_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63104.1|1779777_1780551_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY63105.1|1781535_1782486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63106.1|1782509_1782974_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY63107.1|1783120_1784329_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY63108.1|1784339_1784810_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY63109.1|1784928_1786218_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY63110.1|1788958_1789909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63111.1|1790007_1791024_-	folate-binding protein	NA	NA	NA	NA	NA
AZY63112.1|1791190_1792237_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY63113.1|1792233_1792860_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY63114.1|1792856_1793909_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY63115.1|1793958_1794729_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY63116.1|1794779_1795616_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63117.1|1795811_1796552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63118.1|1796626_1797370_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63119.1|1798031_1798805_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY63120.1|1799942_1801232_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY63121.1|1802842_1804090_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY63122.1|1804099_1805809_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY63123.1|1805805_1806744_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY63124.1|1806740_1808024_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY63125.1|1808027_1808510_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY63126.1|1808510_1809497_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63127.1|1809669_1810389_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63128.1|1810505_1811456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2202859	2258095	4111618	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZY63428.1|2202859_2203810_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63429.1|2204010_2204820_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY63430.1|2204944_2205895_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63431.1|2205891_2206785_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY63432.1|2206909_2207104_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY63433.1|2207103_2207445_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY63434.1|2207454_2209317_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY63435.1|2209446_2209959_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY63436.1|2209961_2210285_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY63437.1|2210286_2210697_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY63438.1|2210734_2211946_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY63439.1|2211963_2212476_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY63440.1|2212691_2213183_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY63441.1|2213435_2215472_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY63442.1|2215549_2216752_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY63443.1|2216802_2217531_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY63444.1|2219088_2220039_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63445.1|2220609_2220822_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63446.1|2220839_2221571_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63447.1|2221605_2222247_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY63448.1|2222239_2222956_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY63449.1|2225120_2225897_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY63450.1|2225918_2227076_-	thiolase	NA	NA	NA	NA	NA
AZY63451.1|2227072_2227504_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63452.1|2227500_2228304_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY63453.1|2228317_2228773_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY63454.1|2228785_2229757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY63455.1|2229822_2231046_-	CoA transferase	NA	NA	NA	NA	NA
AZY63456.1|2231273_2232224_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63457.1|2232347_2234801_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY63458.1|2234989_2236294_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY63459.1|2236398_2237052_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY63460.1|2237054_2238365_-	trigger factor	NA	NA	NA	NA	NA
AZY63461.1|2238543_2239122_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY63462.1|2239233_2239434_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY63463.1|2239779_2240346_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY63464.1|2240429_2240633_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY63465.1|2240939_2241260_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63466.1|2241301_2241583_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63467.1|2241657_2242914_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY63468.1|2243296_2243626_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY63469.1|2245196_2246018_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY63470.1|2246017_2247157_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY63471.1|2247163_2248060_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY63472.1|2248056_2249982_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY63473.1|2250341_2252954_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY63474.1|2253006_2255307_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY63475.1|2255303_2256512_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY63476.1|2256773_2257148_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63477.1|2257144_2258095_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2261202	2315472	4111618	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
AZY63479.1|2261202_2264064_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY63480.1|2264066_2264573_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY63481.1|2264677_2265886_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY63482.1|2265887_2266826_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63483.1|2266987_2267461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY63484.1|2267457_2268408_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63485.1|2268394_2268574_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63486.1|2268518_2268959_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY63487.1|2269087_2270317_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY63488.1|2270355_2271177_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY63489.1|2271230_2272382_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY63490.1|2272473_2272962_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY63491.1|2275488_2278062_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY63492.1|2278132_2280706_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY63493.1|2280971_2281172_+	CsbD family protein	NA	NA	NA	NA	NA
AZY63494.1|2281203_2281365_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY63495.1|2281422_2281761_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY63496.1|2281909_2282860_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63497.1|2282958_2283909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63498.1|2284007_2284727_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY65135.1|2284803_2285352_+	arylesterase	NA	NA	NA	NA	NA
AZY63499.1|2285333_2287349_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY63500.1|2287531_2288281_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY63501.1|2288293_2289157_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY63502.1|2289160_2290576_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY63503.1|2290709_2291438_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY63504.1|2291576_2291777_-	copper chaperone	NA	NA	NA	NA	NA
AZY63505.1|2291952_2292351_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY63506.1|2292374_2293775_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY65136.1|2293893_2294646_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63507.1|2294934_2295612_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63508.1|2295638_2296418_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY63509.1|2296414_2297299_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY65137.1|2297316_2298006_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY63510.1|2298080_2298839_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY63511.1|2298964_2299612_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY65138.1|2299879_2300896_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY63512.1|2300993_2302034_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY63513.1|2302168_2303461_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY63514.1|2304820_2305204_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY63515.1|2305221_2305809_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY63516.1|2305846_2306797_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63517.1|2306895_2307456_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY63518.1|2307452_2307998_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63519.1|2308193_2309222_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63520.1|2309262_2310603_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY63521.1|2310711_2311716_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63522.1|2311822_2314423_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY63523.1|2314521_2315472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2354585	2428772	4111618	protease,transposase	uncultured_Caudovirales_phage(10.0%)	59	NA	NA
AZY63562.1|2354585_2355536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63563.1|2355837_2356314_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
AZY63564.1|2356937_2358575_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
AZY63565.1|2358605_2359919_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
AZY63566.1|2360052_2360370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63567.1|2360470_2361793_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63568.1|2361789_2362740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63569.1|2363269_2364292_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63570.1|2364320_2365151_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
AZY65143.1|2365167_2366865_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY63571.1|2366929_2368006_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
AZY63572.1|2368165_2369029_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY63573.1|2369059_2369629_+	phosphohydrolase	NA	NA	NA	NA	NA
AZY63574.1|2369645_2370497_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY63575.1|2371554_2372436_+|protease	protease HtpX	protease	NA	NA	NA	NA
AZY63576.1|2372510_2373500_-	quinone oxidoreductase	NA	NA	NA	NA	NA
AZY63577.1|2373562_2374513_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY63578.1|2374575_2375433_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY63579.1|2375492_2375981_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63580.1|2377529_2378744_+	EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY63581.1|2378740_2380327_+	multidrug resistance protein	NA	NA	NA	NA	NA
AZY63582.1|2380345_2381413_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
AZY63583.1|2381517_2383062_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
AZY63584.1|2383481_2385056_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63585.1|2385163_2386180_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY63586.1|2386176_2387016_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY63587.1|2387020_2388658_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
AZY63588.1|2388654_2389605_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63589.1|2389747_2391022_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
AZY63590.1|2391018_2391342_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY65144.1|2391414_2392428_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
AZY63591.1|2392447_2393710_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY63592.1|2393712_2394636_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY63593.1|2394632_2396126_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY63594.1|2396136_2397069_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZY63595.1|2397250_2398576_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
AZY63596.1|2398610_2399966_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AZY63597.1|2400026_2401625_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
AZY63598.1|2401701_2402433_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY63599.1|2402467_2403841_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AZY63600.1|2403856_2404768_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AZY63601.1|2404758_2405352_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
AZY63602.1|2405413_2405800_+	ribosome silencing factor	NA	NA	NA	NA	NA
AZY63603.1|2405811_2406282_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZY63604.1|2406293_2406917_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY63605.1|2406937_2409685_-	autotransporter Vag8	NA	NA	NA	NA	NA
AZY63606.1|2415960_2416176_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63607.1|2416162_2417113_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63608.1|2417156_2418620_+	ribonuclease G	NA	NA	NA	NA	NA
AZY63609.1|2418653_2419556_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY63610.1|2419552_2420098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63611.1|2420181_2421681_+	MFS transporter	NA	NA	NA	NA	NA
AZY63612.1|2421653_2423429_-	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
AZY63613.1|2423540_2424506_+	heptosyltransferase II	NA	NA	NA	NA	NA
AZY63614.1|2424518_2425283_+	YdcF family protein	NA	NA	NA	NA	NA
AZY63615.1|2425287_2425560_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
AZY65145.1|2425684_2426806_-	transferase	NA	NA	NA	NA	NA
AZY63616.1|2426813_2427539_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AZY63617.1|2427821_2428772_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2695726	2736926	4111618	tRNA,transposase	Salmonella_phage(40.0%)	42	NA	NA
AZY63846.1|2695726_2698144_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY63847.1|2698156_2699179_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY63848.1|2699253_2699613_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY63849.1|2699628_2699826_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY63850.1|2700161_2701112_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63851.1|2701098_2701287_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63852.1|2701306_2701756_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY63853.1|2701752_2702703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63854.1|2702813_2704262_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY63855.1|2704376_2704658_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63856.1|2704761_2705712_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63857.1|2705956_2706670_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY63858.1|2706792_2707020_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY63859.1|2707314_2707953_-	DedA family protein	NA	NA	NA	NA	NA
AZY63860.1|2708025_2709096_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY63861.1|2709092_2710043_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63862.1|2710458_2710983_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY63863.1|2710986_2711256_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63864.1|2711454_2712516_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY63865.1|2712599_2714234_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY63866.1|2714235_2715039_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY63867.1|2715067_2716027_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY63868.1|2716030_2717545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63869.1|2717581_2718586_-	peptidase M20	NA	NA	NA	NA	NA
AZY63870.1|2718593_2718842_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63871.1|2719016_2719487_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY63872.1|2719522_2720134_-	LysE family translocator	NA	NA	NA	NA	NA
AZY63873.1|2720164_2720788_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY63874.1|2720868_2722401_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY63875.1|2722435_2723677_-	MFS transporter	NA	NA	NA	NA	NA
AZY63876.1|2723720_2724752_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY63877.1|2724748_2725918_-	amine oxidase	NA	NA	NA	NA	NA
AZY63878.1|2725911_2726592_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY63879.1|2726753_2727596_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63880.1|2727758_2728730_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY63881.1|2728901_2729780_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY63882.1|2729802_2730873_-	FUSC family protein	NA	NA	NA	NA	NA
AZY63883.1|2730913_2731864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63884.1|2731850_2732036_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63885.1|2732156_2733515_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY63886.1|2733626_2735354_+	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY63887.1|2735975_2736926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2787329	2860199	4111618	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
AZY63927.1|2787329_2787746_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY63928.1|2787856_2788489_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY63929.1|2788517_2788961_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY63930.1|2788982_2790074_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63931.1|2790128_2790929_-	aldolase	NA	NA	NA	NA	NA
AZY63932.1|2791064_2791685_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY63933.1|2791824_2792298_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63934.1|2793437_2794388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63935.1|2794384_2802046_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY63936.1|2802286_2806333_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY63937.1|2806645_2807227_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY63938.1|2807223_2808522_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY63939.1|2808601_2809630_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY63940.1|2809553_2809904_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63941.1|2809890_2810841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63942.1|2810837_2811788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63943.1|2812104_2812710_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY63944.1|2812763_2814077_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY63945.1|2814151_2814622_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY63946.1|2814621_2815410_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY63947.1|2815420_2817073_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY63948.1|2817160_2818111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65159.1|2819272_2819779_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY63949.1|2819775_2820540_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY63950.1|2820555_2820840_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY63951.1|2820904_2821894_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY63952.1|2822065_2822995_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY63953.1|2822966_2823653_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY63954.1|2823686_2824232_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY63955.1|2824276_2825542_+	peptidase M48	NA	NA	NA	NA	NA
AZY63956.1|2825538_2826441_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY63957.1|2827622_2828567_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY63958.1|2828661_2830179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY63959.1|2830220_2831849_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY63960.1|2831956_2832838_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63961.1|2835950_2836325_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY63962.1|2836349_2836688_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY63963.1|2836731_2838366_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY63964.1|2838404_2839751_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY65160.1|2839858_2841280_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY63965.1|2841349_2841934_-	nitroreductase	NA	NA	NA	NA	NA
AZY63966.1|2842036_2842987_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63967.1|2843121_2844228_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63968.1|2844238_2845336_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY63969.1|2845480_2846686_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY63970.1|2846692_2847214_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY63971.1|2847210_2847702_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY63972.1|2847698_2847950_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY63973.1|2847930_2848416_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY63974.1|2848551_2852013_+	hypothetical protein	NA	NA	NA	NA	NA
AZY63975.1|2852009_2852915_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY63976.1|2852924_2853356_-	lipoprotein	NA	NA	NA	NA	NA
AZY65161.1|2853602_2854106_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY63977.1|2854117_2855584_+	MFS transporter	NA	NA	NA	NA	NA
AZY63978.1|2855658_2856534_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65162.1|2856530_2857538_-	biotin synthase	NA	NA	NA	NA	NA
AZY63979.1|2858005_2858311_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY63980.1|2858401_2858992_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65163.1|2859182_2860199_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2863342	2930152	4111618	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY63983.1|2863342_2864293_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63984.1|2864391_2865342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63985.1|2865338_2866133_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY63986.1|2866164_2866869_-	oxidoreductase	NA	NA	NA	NA	NA
AZY63987.1|2866943_2867744_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY63988.1|2867740_2868148_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY63989.1|2868144_2868786_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY63990.1|2868778_2870800_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY63991.1|2872039_2873371_+	MFS transporter	NA	NA	NA	NA	NA
AZY63992.1|2873367_2874318_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY63993.1|2876024_2876330_-	hypothetical protein	NA	NA	NA	NA	NA
AZY63994.1|2876998_2877337_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY63995.1|2881889_2882492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY63996.1|2882588_2883878_+	MFS transporter	NA	NA	NA	NA	NA
AZY63997.1|2883935_2884667_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY63998.1|2884663_2885467_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY63999.1|2885463_2886552_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY64000.1|2886548_2887478_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY64001.1|2887626_2888772_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64002.1|2888793_2889744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64003.1|2890074_2893896_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY64004.1|2894052_2894721_-	lipoprotein	NA	NA	NA	NA	NA
AZY64005.1|2894725_2896399_-	MCE family protein	NA	NA	NA	NA	NA
AZY64006.1|2896417_2897737_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY64007.1|2897741_2900093_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY65164.1|2900112_2902281_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY64008.1|2902277_2907467_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY64009.1|2907556_2907871_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY64010.1|2908098_2908344_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY64011.1|2908438_2908957_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY64012.1|2909056_2910262_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY64013.1|2910377_2911775_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY64014.1|2911891_2912470_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY64015.1|2912542_2913934_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY64016.1|2914101_2915052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64017.1|2915332_2915953_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY64018.1|2915949_2916363_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY64019.1|2916359_2917403_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY64020.1|2917458_2917647_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64021.1|2917656_2918421_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY64022.1|2918511_2919168_+	adenylate kinase	NA	NA	NA	NA	NA
AZY64023.1|2919259_2920018_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY64024.1|2920043_2921645_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY64025.1|2921845_2922850_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY64026.1|2922950_2923214_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY64027.1|2923331_2924108_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY64028.1|2924698_2925649_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64029.1|2928032_2929145_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY64030.1|2929201_2930152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	2960538	2999727	4111618	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY64059.1|2960538_2961489_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64060.1|2961475_2961721_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64061.1|2961609_2962506_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY64062.1|2964783_2967009_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY64063.1|2967173_2968262_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY64064.1|2968218_2968872_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY64065.1|2968919_2969717_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64066.1|2970248_2971199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64067.1|2971279_2972428_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY64068.1|2972484_2973435_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64069.1|2973421_2973640_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64070.1|2973533_2973839_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY64071.1|2973867_2974302_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY64072.1|2974303_2975548_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY64073.1|2975544_2976255_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65166.1|2976269_2977181_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64074.1|2977543_2977948_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64075.1|2977944_2978403_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64076.1|2978409_2979318_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65167.1|2979314_2980181_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY64077.1|2980167_2980995_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY64078.1|2981005_2982133_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY64079.1|2983210_2984449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64080.1|2984490_2985753_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64081.1|2985759_2986512_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY64082.1|2986563_2986749_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65168.1|2987024_2987489_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY64083.1|2987520_2988180_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY64084.1|2988324_2990433_+	AsmA family protein	NA	NA	NA	NA	NA
AZY64085.1|2990429_2991380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64086.1|2991483_2992104_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65169.1|2992207_2992948_+	oxidoreductase	NA	NA	NA	NA	NA
AZY64087.1|2994082_2995207_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64088.1|2995252_2995621_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64089.1|2995862_2996813_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64090.1|2997848_2998391_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64091.1|2998595_2998790_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64092.1|2998776_2999727_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3188644	3249674	4111618	transposase	Xanthomonas_phage(50.0%)	49	NA	NA
AZY64242.1|3188644_3189595_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64243.1|3189603_3190152_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZY64244.1|3190148_3190757_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY64245.1|3190939_3191410_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64246.1|3191416_3192676_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY64247.1|3192728_3193541_-	oxidoreductase	NA	NA	NA	NA	NA
AZY64248.1|3193655_3194210_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY64249.1|3194219_3195209_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64250.1|3195388_3196108_-	VOC family protein	NA	NA	NA	NA	NA
AZY64251.1|3196124_3198860_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZY64252.1|3199039_3200026_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZY64253.1|3200067_3200562_+	DUF721 domain-containing protein	NA	NA	NA	NA	NA
AZY64254.1|3200673_3201597_-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZY64255.1|3201825_3203010_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZY64256.1|3203198_3204425_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZY64257.1|3204429_3205251_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZY64258.1|3205263_3206214_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZY64259.1|3206210_3207617_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZY64260.1|3207613_3208687_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZY64261.1|3208683_3209877_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZY64262.1|3209873_3211406_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZY64263.1|3211402_3212572_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZY64264.1|3212561_3215399_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
AZY65184.1|3215395_3217096_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZY64265.1|3217122_3217401_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZY64266.1|3217400_3218495_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZY64267.1|3218503_3218995_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZY64268.1|3219734_3221543_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZY64269.1|3221582_3222662_-	dihydroorotase	NA	NA	NA	NA	NA
AZY64270.1|3222658_3223852_-	amidohydrolase	NA	NA	NA	NA	NA
AZY64271.1|3224001_3224280_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZY64272.1|3224609_3225002_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65185.1|3231726_3232203_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64273.1|3232355_3233468_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZY64274.1|3233535_3234096_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZY64275.1|3234119_3234452_-	cytochrome C	NA	NA	NA	NA	NA
AZY64276.1|3234435_3236124_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZY64277.1|3236243_3237032_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZY64278.1|3237739_3238690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64279.1|3239134_3239446_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY64280.1|3239445_3239976_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64281.1|3240138_3241089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64282.1|3241187_3242138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64283.1|3242427_3242892_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY64284.1|3242906_3244412_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY64285.1|3244665_3246273_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY64286.1|3246328_3247234_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY64287.1|3247674_3248625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64288.1|3248723_3249674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3271399	3309814	4111618	transposase,holin	Tupanvirus(16.67%)	36	NA	NA
AZY64310.1|3271399_3271735_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY64311.1|3271734_3272577_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY64312.1|3272675_3273626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64313.1|3273690_3274662_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64314.1|3274725_3275745_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY65188.1|3275746_3277120_-	MFS transporter	NA	NA	NA	NA	NA
AZY64315.1|3277397_3278078_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY64316.1|3278090_3280217_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY64317.1|3280213_3281308_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY64318.1|3281322_3282582_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY64319.1|3282601_3284326_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY64320.1|3284564_3285317_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY64321.1|3285455_3286406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65189.1|3286718_3288197_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY64322.1|3288203_3289313_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY64323.1|3289324_3290005_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY64324.1|3290026_3290782_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65190.1|3290917_3291802_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY64325.1|3291889_3292471_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64326.1|3292563_3292686_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64327.1|3292731_3293031_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY65191.1|3293182_3293608_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64328.1|3295814_3296318_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64329.1|3296333_3297284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64330.1|3297270_3297468_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64331.1|3297811_3298585_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64332.1|3298717_3299728_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64333.1|3299879_3301535_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY64334.1|3301589_3301931_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY64335.1|3301944_3303384_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY64336.1|3303516_3304332_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64337.1|3304350_3304539_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64338.1|3304525_3305476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64339.1|3306863_3307811_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64340.1|3308037_3308778_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64341.1|3308863_3309814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3385220	3438961	4111618	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY64392.1|3385220_3386171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64393.1|3386575_3387220_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY64394.1|3387244_3387829_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY64395.1|3387929_3388547_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY64396.1|3388549_3390265_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY64397.1|3390261_3390570_-	urease subunit beta	NA	NA	NA	NA	NA
AZY64398.1|3390586_3391222_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY64399.1|3391248_3391551_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY64400.1|3391651_3392506_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY64401.1|3393087_3393360_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY64402.1|3393777_3394185_-	GFA family protein	NA	NA	NA	NA	NA
AZY64403.1|3394554_3395349_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64404.1|3395449_3396685_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY64405.1|3396753_3397770_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64406.1|3397766_3399158_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY64407.1|3399154_3400351_+	MFS transporter	NA	NA	NA	NA	NA
AZY64408.1|3400347_3401886_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY64409.1|3401882_3403142_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64410.1|3405082_3406033_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64411.1|3406799_3407894_-	CoA transferase	NA	NA	NA	NA	NA
AZY64412.1|3407886_3409221_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY64413.1|3409174_3409858_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64414.1|3409883_3411047_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY64415.1|3411043_3412045_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY64416.1|3412044_3412917_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY64417.1|3412913_3413663_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY64418.1|3413659_3414451_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY64419.1|3414447_3415587_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64420.1|3415895_3416648_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY64421.1|3416681_3417464_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY64422.1|3417467_3417857_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY64423.1|3418996_3419860_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY64424.1|3419895_3420984_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64425.1|3420980_3421931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64426.1|3421917_3422286_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64427.1|3422284_3425263_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64428.1|3426189_3427068_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY64429.1|3429016_3429967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64430.1|3429963_3430431_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY64431.1|3430473_3431244_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY64432.1|3431264_3432065_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY64433.1|3432075_3433485_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY64434.1|3433579_3434365_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY65195.1|3434604_3435621_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY64435.1|3435728_3436121_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY64436.1|3436258_3436939_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY64437.1|3436943_3437942_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64438.1|3438010_3438961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3445116	3504416	4111618	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY64442.1|3445116_3446880_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY64443.1|3446991_3447870_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY64444.1|3447982_3448798_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY64445.1|3448801_3449053_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY65196.1|3449137_3450154_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY64446.1|3450484_3450706_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64447.1|3453066_3453984_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY64448.1|3454481_3455690_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY64449.1|3455769_3457341_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64450.1|3457458_3458394_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY64451.1|3458582_3459527_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY64452.1|3459595_3459811_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64453.1|3460094_3465812_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY64454.1|3465817_3466945_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY64455.1|3467000_3467627_+	aminotransferase	NA	NA	NA	NA	NA
AZY65197.1|3467898_3468915_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY64456.1|3469010_3469721_-	oxidoreductase	NA	NA	NA	NA	NA
AZY65198.1|3469717_3470707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64457.1|3470838_3472434_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY64458.1|3472436_3473174_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64459.1|3473329_3474202_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY64460.1|3474470_3475691_+	MFS transporter	NA	NA	NA	NA	NA
AZY64461.1|3475687_3476347_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY64462.1|3476418_3477051_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY64463.1|3477080_3477599_+	flavin reductase	NA	NA	NA	NA	NA
AZY64464.1|3477609_3478719_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY64465.1|3478765_3479620_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY64466.1|3479621_3480524_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64467.1|3481746_3482697_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64468.1|3484453_3485443_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64469.1|3485618_3486407_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY64470.1|3486403_3487435_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY64471.1|3487453_3488017_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY64472.1|3488072_3489593_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY64473.1|3489856_3490561_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY64474.1|3490568_3491306_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY64475.1|3491411_3491786_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY64476.1|3491828_3493118_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64477.1|3493114_3494284_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY64478.1|3494280_3495120_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY64479.1|3495179_3496115_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY64480.1|3496127_3497078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64481.1|3497176_3498139_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY64482.1|3498170_3498530_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY64483.1|3498654_3499557_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY64484.1|3499558_3501331_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY64485.1|3501365_3502142_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY64486.1|3503465_3504416_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3519354	3577427	4111618	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZY64498.1|3519354_3520305_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64499.1|3520433_3521567_-	peptidase	NA	NA	NA	NA	NA
AZY64500.1|3521610_3522516_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY64501.1|3522518_3524219_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY64502.1|3524215_3525136_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY64503.1|3525143_3526121_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY64504.1|3526179_3527214_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY64505.1|3529188_3529425_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64506.1|3529551_3530415_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY64507.1|3530503_3531325_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY64508.1|3531404_3532142_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY64509.1|3532138_3533131_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY64510.1|3533244_3533907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64511.1|3533951_3535100_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY64512.1|3537423_3538374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64513.1|3538714_3539665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64514.1|3539763_3540714_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64515.1|3541010_3541508_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64516.1|3541550_3543326_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY65201.1|3543372_3544200_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY64517.1|3544206_3544941_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY64518.1|3546110_3546905_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64519.1|3547194_3547785_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY64520.1|3547818_3549147_-	amidase	NA	NA	NA	NA	NA
AZY64521.1|3549221_3550367_-	transporter	NA	NA	NA	NA	NA
AZY64522.1|3550478_3551477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64523.1|3551439_3551874_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY64524.1|3553390_3554275_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY64525.1|3554271_3555477_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY64526.1|3555473_3556334_-	endonuclease	NA	NA	NA	NA	NA
AZY64527.1|3556446_3558237_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY64528.1|3558277_3558943_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY64529.1|3558943_3559252_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY65202.1|3559417_3560704_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64530.1|3562137_3563088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64531.1|3565039_3566254_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY64532.1|3566359_3567349_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY64533.1|3567345_3567954_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY64534.1|3567966_3568596_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY64535.1|3568592_3569213_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY64536.1|3569244_3570036_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY64537.1|3570878_3571343_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY64538.1|3571361_3572288_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY64539.1|3572341_3573628_-	cytochrome c	NA	NA	NA	NA	NA
AZY64540.1|3574558_3575431_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY64541.1|3575427_3576378_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY64542.1|3576476_3577427_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	3709549	3847929	4111618	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	122	3755242:3755259	3799882:3799899
AZY64650.1|3709549_3710500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64651.1|3710599_3711550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64652.1|3711546_3712182_-	transporter	NA	NA	NA	NA	NA
AZY64653.1|3712311_3713211_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY64654.1|3713306_3713798_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY64655.1|3713844_3714810_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64656.1|3715943_3717185_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY64657.1|3717298_3718315_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY64658.1|3718349_3718826_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64659.1|3718968_3719877_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY64660.1|3719990_3721103_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY64661.1|3721203_3721737_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64662.1|3721825_3723076_+	kynureninase	NA	NA	NA	NA	NA
AZY64663.1|3723177_3723690_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY64664.1|3723595_3723802_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64665.1|3723788_3724739_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64666.1|3724804_3725743_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY64667.1|3725765_3726392_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY64668.1|3726388_3727045_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY64669.1|3727041_3727644_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64670.1|3727650_3728277_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY64671.1|3728418_3728988_+	bacterioferritin	NA	NA	NA	NA	NA
AZY64672.1|3729058_3730378_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY64673.1|3730484_3730676_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY64674.1|3730927_3732217_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY64675.1|3732371_3733367_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64676.1|3733451_3734126_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64677.1|3734122_3735073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64678.1|3735059_3735242_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64679.1|3735234_3736476_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY64680.1|3736472_3737417_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY64681.1|3737535_3738486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64682.1|3738445_3739375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64683.1|3739428_3739764_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY64684.1|3739808_3740573_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY64685.1|3740596_3741337_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64686.1|3741344_3742919_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY64687.1|3742932_3743910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64688.1|3744182_3744782_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY64689.1|3744815_3751718_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY64690.1|3752164_3752296_-	entericidin	NA	NA	NA	NA	NA
AZY64691.1|3752327_3752489_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64692.1|3752561_3752768_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY64693.1|3753772_3754432_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY64694.1|3754459_3755605_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3755242:3755259	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY64695.1|3755745_3756081_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY64696.1|3756155_3757016_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY64697.1|3757279_3757981_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY64698.1|3758150_3758546_+	RidA family protein	NA	NA	NA	NA	NA
AZY64699.1|3758655_3759606_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64700.1|3759616_3760258_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64701.1|3760424_3760667_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64702.1|3760765_3761716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64703.1|3761751_3762219_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY64704.1|3762452_3762830_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64705.1|3762826_3763009_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64706.1|3763012_3763999_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY64707.1|3763995_3764643_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY64708.1|3764700_3765228_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64709.1|3765261_3766449_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY64710.1|3766438_3766801_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY64711.1|3766793_3766913_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64712.1|3766913_3767114_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY64713.1|3767110_3768100_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY64714.1|3769586_3771557_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY64715.1|3771798_3772197_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64716.1|3772205_3773129_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64717.1|3773586_3774537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64718.1|3774767_3776459_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY64719.1|3776507_3776780_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY64720.1|3776776_3777148_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY64721.1|3777243_3777378_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY64722.1|3777783_3779193_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY64723.1|3779189_3780305_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY64724.1|3780399_3782853_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY64725.1|3782971_3783763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64726.1|3783882_3785310_+	amidase	NA	NA	NA	NA	NA
AZY65212.1|3785348_3786320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64727.1|3786738_3787902_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY64728.1|3787989_3788835_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64729.1|3790391_3791342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64730.1|3791896_3792271_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64731.1|3792345_3793404_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY64732.1|3793427_3794378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64733.1|3797259_3798429_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY65213.1|3798529_3800137_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3799882:3799899	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY64734.1|3800183_3802205_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY64735.1|3802233_3802479_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY64736.1|3802492_3803683_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY64737.1|3803878_3804844_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64738.1|3804866_3806006_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY64739.1|3806217_3807180_+	immunogenic protein	NA	NA	NA	NA	NA
AZY64740.1|3807303_3809328_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY64741.1|3809524_3811768_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY64742.1|3812046_3812505_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64743.1|3813432_3816054_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64744.1|3816117_3818745_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY64745.1|3818896_3819961_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64746.1|3819957_3820731_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY64747.1|3820739_3821573_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY64748.1|3821585_3822365_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY65214.1|3822399_3823872_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY64749.1|3823899_3824658_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY64750.1|3824713_3826564_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY64751.1|3826657_3827134_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64752.1|3827150_3828071_-	bestrophin	NA	NA	NA	NA	NA
AZY64753.1|3828177_3828678_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY64754.1|3829051_3829744_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY64755.1|3830998_3834772_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY64756.1|3835108_3836998_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY64757.1|3837009_3837903_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY64758.1|3837928_3838804_+	thiazole synthase	NA	NA	NA	NA	NA
AZY64759.1|3838800_3839652_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY64760.1|3839713_3840394_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY64761.1|3840397_3840757_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64762.1|3840757_3841717_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64763.1|3841737_3842226_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY65215.1|3842507_3843524_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY64764.1|3843715_3844819_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY64765.1|3844905_3845670_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AZY64766.1|3845791_3846982_+	voltage-gated potassium channel TrkA	NA	NA	NA	NA	NA
AZY64767.1|3846978_3847929_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025525	Bordetella pertussis strain I420 chromosome, complete genome	4111618	4010686	4075598	4111618	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY64929.1|4010686_4011172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64930.1|4011390_4012371_+	protein BugT	NA	NA	NA	NA	NA
AZY64931.1|4012637_4013447_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY64932.1|4013486_4014167_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY64933.1|4014160_4014619_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY64934.1|4014630_4014993_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY64935.1|4015075_4015759_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY64936.1|4015814_4016123_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY64937.1|4016141_4016456_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY64938.1|4016452_4018927_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY64939.1|4018934_4020326_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY64940.1|4020322_4020508_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY64941.1|4020486_4021188_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY64942.1|4021184_4022006_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY65224.1|4021986_4023111_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY64943.1|4023103_4024123_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY64944.1|4024328_4025363_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY65225.1|4025463_4026255_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY64945.1|4026337_4026712_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY64946.1|4026689_4028099_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY64947.1|4028091_4029474_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY64948.1|4029808_4031413_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY64949.1|4031448_4032462_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY64950.1|4032472_4033399_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY64951.1|4033789_4034740_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64952.1|4034909_4036136_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY64953.1|4036335_4037202_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY64954.1|4037194_4038157_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY64955.1|4038257_4039208_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64956.1|4039306_4040257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64957.1|4040355_4041306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY64958.1|4041302_4042796_-	RND transporter	NA	NA	NA	NA	NA
AZY64959.1|4042792_4045900_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY64960.1|4045896_4048965_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY64961.1|4048961_4050212_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY64962.1|4050392_4051154_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY64963.1|4051186_4051837_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY64964.1|4051839_4052679_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY64965.1|4052919_4053663_+	hypothetical protein	NA	NA	NA	NA	NA
AZY64966.1|4053745_4054093_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY64967.1|4054190_4055033_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY64968.1|4055077_4055965_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY64969.1|4055991_4056180_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY64970.1|4056277_4057735_+	MFS transporter	NA	NA	NA	NA	NA
AZY64971.1|4057721_4059248_+	glycerol kinase	NA	NA	NA	NA	NA
AZY64972.1|4059266_4059734_-	hypothetical protein	NA	NA	NA	NA	NA
AZY64973.1|4059733_4060756_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY64974.1|4060876_4061617_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY64975.1|4061671_4062772_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY64976.1|4062773_4063964_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY64977.1|4064083_4065100_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY64978.1|4065418_4066090_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY64979.1|4066086_4066995_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY64980.1|4067206_4067854_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY64981.1|4071705_4072782_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY64982.1|4072792_4073602_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY64983.1|4073691_4074465_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY64984.1|4074647_4075598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
