The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	0	122073	4145812	transposase,protease,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY65228.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY65229.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY65230.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY65231.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY65232.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY65233.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY65234.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY65235.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY65236.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY65237.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY65238.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY65239.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY65240.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY65241.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY68641.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY65242.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65243.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY65244.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY65245.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65246.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY65247.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65248.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY65249.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY68642.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65250.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY65251.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY65252.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65253.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY65254.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY65255.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY65256.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY65257.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY65258.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY65259.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY65260.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY65261.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY65262.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65263.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65264.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY65265.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65266.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY65267.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY65268.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65269.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY65270.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY65271.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY65272.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY65273.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY65274.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65275.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65276.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY65277.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY65278.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65279.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65280.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY65281.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY65282.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY65283.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY65284.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65285.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65286.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY65287.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY65288.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY65289.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY65290.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68643.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65291.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY65292.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68644.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65293.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY65294.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY65295.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY65296.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY65297.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY65298.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY65299.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY65300.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY65301.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY65302.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY65303.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY65304.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY65305.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65306.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY65307.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY65308.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY65309.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY65310.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65311.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY65312.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY65313.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY65314.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY65315.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY65316.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY65317.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY65318.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY65319.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY65320.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65321.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY65322.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY65323.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY65324.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY68645.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY65325.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68646.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY65326.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY65327.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY65328.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65329.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY65330.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY65331.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	164894	225405	4145812	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY65362.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65363.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65364.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZY65365.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY65366.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY65367.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY65368.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68652.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZY65369.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65370.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZY65371.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZY65372.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY65373.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY65374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65375.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY65376.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY65377.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY65378.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY65379.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZY65380.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY68653.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY65381.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65382.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY65383.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY65384.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65385.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY65386.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY65387.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY65388.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY65389.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY65390.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65391.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZY65392.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65393.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65394.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY65395.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZY65396.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY65397.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZY65398.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY65399.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY65400.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY68654.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65401.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY65402.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY65403.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY65404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY65405.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY65406.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY65407.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY65408.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY65409.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	233337	286925	4145812	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY65417.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65418.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65419.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65420.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY65421.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY65422.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65423.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65424.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65425.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65426.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY65427.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY65428.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY65429.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY65430.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY65431.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY65432.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY65433.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68655.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY65434.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY65435.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY65436.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZY65437.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY65438.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65439.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY65440.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZY65441.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65442.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65443.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65444.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY65445.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY65446.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY65447.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY65448.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY65449.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY65450.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY65451.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65452.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65453.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY65454.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65455.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY65456.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY65457.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
AZY65458.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AZY65459.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY65460.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY65461.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY68656.1|284841_285978_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY65462.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	555310	614610	4145812	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY65682.1|555310_556261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65683.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY65684.1|558395_560168_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY65685.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY65686.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY65687.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY65688.1|562648_563599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65689.1|563611_564547_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY65690.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY65691.1|565442_566612_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY65692.1|566608_567898_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65693.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY65694.1|568420_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY65695.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY65696.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY65697.1|571709_572273_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY65698.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY65699.1|573319_574108_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY65700.1|574283_575273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65701.1|577029_577980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65702.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65703.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY65704.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY65705.1|582127_582646_-	flavin reductase	NA	NA	NA	NA	NA
AZY65706.1|582675_583308_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY65707.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY65708.1|584035_585256_-	MFS transporter	NA	NA	NA	NA	NA
AZY65709.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY65710.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65711.1|587292_588888_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY68677.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65712.1|590005_590716_+	oxidoreductase	NA	NA	NA	NA	NA
AZY68678.1|590811_591828_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY65713.1|592099_592726_-	aminotransferase	NA	NA	NA	NA	NA
AZY65714.1|592781_593909_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY65715.1|593914_599632_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY65716.1|599915_600131_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65717.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY65718.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY65719.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65720.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY65721.1|605742_606660_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY65722.1|609020_609242_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68679.1|609572_610589_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY65723.1|610673_610925_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY65724.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY65725.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY65726.1|612846_614610_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	620765	674506	4145812	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY65730.1|620765_621716_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65731.1|621784_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65732.1|622787_623468_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY65733.1|623605_623998_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY68680.1|624105_625122_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY65734.1|625361_626147_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY65735.1|626241_627651_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY65736.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY65737.1|628482_629253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY65738.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY65739.1|629759_630710_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65740.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY65741.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65742.1|637440_637809_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65743.1|637795_638746_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65744.1|638742_639831_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65745.1|639866_640730_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY65746.1|641869_642259_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY65747.1|642262_643045_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY65748.1|643078_643831_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY65749.1|644139_645279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65750.1|645275_646067_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY65751.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY65752.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY65753.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY65754.1|648679_649843_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY65755.1|649868_650552_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65756.1|650505_651840_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY65757.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
AZY68681.1|653693_654644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65758.1|656584_657844_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65759.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY65760.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
AZY65761.1|660568_661960_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY65762.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65763.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY65764.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65765.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
AZY65766.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY65767.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY65768.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY65769.1|668504_669140_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY65770.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
AZY65771.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY65772.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY65773.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY65774.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY65775.1|673555_674506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	723393	763394	4145812	integrase,transposase,protease,tRNA	Pseudomonas_phage(33.33%)	32	720692:720710	740580:740598
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY65812.1|723393_724041_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY65813.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY65814.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY65815.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY65816.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
AZY68684.1|728789_728930_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY65817.1|728926_732046_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY65818.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY65819.1|735014_736226_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY65820.1|736222_736423_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65821.1|736409_737360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65822.1|737376_737871_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY65823.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65824.1|738156_739587_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY65825.1|739656_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZY65826.1|740736_741687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY65827.1|742105_744670_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY65828.1|744714_746568_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65829.1|746900_748472_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY65830.1|749913_750864_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65831.1|750949_751690_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65832.1|751916_752864_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65833.1|754251_755202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65834.1|755188_755377_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65835.1|755395_756211_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65836.1|756343_757783_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY65837.1|757796_758138_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY65838.1|758192_759848_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY65839.1|759999_761010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY65840.1|761142_761916_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65841.1|762259_762457_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65842.1|762443_763394_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	773321	820939	4145812	holin,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY65850.1|773321_774272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65851.1|774410_775163_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY65852.1|775401_777126_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY65853.1|777145_778405_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY65854.1|778419_779514_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY65855.1|779510_781637_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY65856.1|781649_782330_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY68688.1|782607_783981_+	MFS transporter	NA	NA	NA	NA	NA
AZY65857.1|783982_785002_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY65858.1|785065_786037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY65859.1|786101_787052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65860.1|787150_787993_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY65861.1|787992_788328_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY65862.1|788398_789817_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY65863.1|790096_791137_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY65864.1|791216_791468_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY65865.1|791578_792877_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY65866.1|793025_793880_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY65867.1|793876_794767_+	acyltransferase	NA	NA	NA	NA	NA
AZY65868.1|794809_795721_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY65869.1|795747_796440_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY65870.1|796454_797435_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY65871.1|797447_799589_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY65872.1|799637_800606_-	nickel transporter	NA	NA	NA	NA	NA
AZY68689.1|800596_801220_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY65873.1|801225_802161_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY65874.1|802157_803054_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY65875.1|803050_803773_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY65876.1|803763_803964_-	hypothetical protein	NA	NA	NA	NA	NA
AZY65877.1|804101_804605_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY65878.1|804881_805997_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY65879.1|806139_806604_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY65880.1|806751_807291_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY65881.1|807312_808647_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY68690.1|808660_808966_-	RND transporter	NA	NA	NA	NA	NA
AZY65882.1|809390_809972_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY65883.1|810053_811004_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65884.1|811102_812053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65885.1|812493_813399_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY65886.1|813454_815062_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY65887.1|815315_816821_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY65888.1|816835_817300_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY65889.1|817589_818540_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY65890.1|818702_819233_+	hypothetical protein	NA	NA	NA	NA	NA
AZY65891.1|819232_819544_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY65892.1|819988_820939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1005154	1099191	4145812	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY66032.1|1005154_1006105_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66033.1|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66034.1|1006972_1007383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66035.1|1007487_1008489_+	amidase	NA	NA	NA	NA	NA
AZY66036.1|1008491_1009688_+	CoA transferase	NA	NA	NA	NA	NA
AZY66037.1|1009708_1010512_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY66038.1|1010592_1010889_+	histidine kinase	NA	NA	NA	NA	NA
AZY66039.1|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY68704.1|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66040.1|1012388_1013138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY66041.1|1013159_1014032_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66042.1|1014060_1014840_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY66043.1|1014873_1015671_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66044.1|1017122_1018295_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY66045.1|1018325_1018718_+	RidA family protein	NA	NA	NA	NA	NA
AZY66046.1|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY66047.1|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68705.1|1021314_1022004_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY66048.1|1022864_1023815_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66049.1|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66050.1|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY66051.1|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY66052.1|1026295_1027516_+	MFS transporter	NA	NA	NA	NA	NA
AZY66053.1|1027463_1028366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66054.1|1029252_1030539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66055.1|1030577_1031951_+	amidase	NA	NA	NA	NA	NA
AZY66056.1|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY66057.1|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66058.1|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66059.1|1034556_1035105_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY66060.1|1035246_1036722_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY66061.1|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY66062.1|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY66063.1|1038714_1039503_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY66064.1|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY66065.1|1041059_1042070_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY66066.1|1042113_1043040_-	VOC family protein	NA	NA	NA	NA	NA
AZY66067.1|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY68706.1|1043911_1044862_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68707.1|1044843_1047333_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY66068.1|1047381_1048074_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY66069.1|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY66070.1|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66071.1|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY68708.1|1051339_1052686_+	MFS transporter	NA	NA	NA	NA	NA
AZY68709.1|1052713_1053463_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY66072.1|1053476_1054259_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY66073.1|1054451_1055402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66074.1|1055463_1056609_-	porin	NA	NA	NA	NA	NA
AZY66075.1|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY66076.1|1057991_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66077.1|1058953_1059904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66078.1|1059890_1060085_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66079.1|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66080.1|1061867_1062818_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66081.1|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66082.1|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68710.1|1065732_1066473_-	oxidoreductase	NA	NA	NA	NA	NA
AZY66083.1|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66084.1|1067300_1068251_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66085.1|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA	NA
AZY66086.1|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY68711.1|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY66087.1|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66088.1|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY66089.1|1072927_1074190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66090.1|1074231_1075470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66091.1|1076547_1077675_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY66092.1|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY66093.1|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY66094.1|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66095.1|1081228_1082179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68712.1|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66096.1|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66097.1|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY66098.1|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY66099.1|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY66100.1|1086089_1086308_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66101.1|1086294_1087245_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66102.1|1087301_1088450_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY66103.1|1088530_1089481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66104.1|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66105.1|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY66106.1|1091467_1092556_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY66107.1|1092720_1094946_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY66108.1|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY66109.1|1098008_1098254_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66110.1|1098240_1099191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1129577	1200548	4145812	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY66140.1|1129577_1130528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66141.1|1130584_1131697_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY66142.1|1134080_1135031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66143.1|1135621_1136398_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY66144.1|1136515_1136779_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY66145.1|1136879_1137884_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY66146.1|1138084_1139686_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY66147.1|1139711_1140470_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY66148.1|1140561_1141218_-	adenylate kinase	NA	NA	NA	NA	NA
AZY66149.1|1141308_1142073_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY66150.1|1142082_1142271_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66151.1|1142326_1143370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY66152.1|1143366_1143780_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY66153.1|1143776_1144397_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY66154.1|1144677_1145628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66155.1|1145795_1147187_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY66156.1|1147259_1147838_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY66157.1|1147954_1149352_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY66158.1|1149467_1150673_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY66159.1|1150772_1151291_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY66160.1|1151385_1151631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY66161.1|1151858_1152173_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY66162.1|1152262_1157452_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY68713.1|1157448_1159617_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY66163.1|1159636_1161988_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY66164.1|1161992_1163312_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY66165.1|1163330_1165004_+	MCE family protein	NA	NA	NA	NA	NA
AZY66166.1|1165008_1165677_+	lipoprotein	NA	NA	NA	NA	NA
AZY66167.1|1165833_1169655_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY66168.1|1169985_1170936_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66169.1|1170957_1172103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66170.1|1172251_1173181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY66171.1|1173177_1174266_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY66172.1|1174262_1175066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY66173.1|1175062_1175794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY66174.1|1175851_1177141_-	MFS transporter	NA	NA	NA	NA	NA
AZY66175.1|1177237_1177840_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66176.1|1182393_1182732_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY66177.1|1183400_1183706_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66178.1|1185412_1186363_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66179.1|1186359_1187691_-	MFS transporter	NA	NA	NA	NA	NA
AZY66180.1|1188930_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY66181.1|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY66182.1|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY66183.1|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY66184.1|1192861_1193566_+	oxidoreductase	NA	NA	NA	NA	NA
AZY66185.1|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY66186.1|1194388_1195339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66187.1|1195437_1196388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66188.1|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY66189.1|1197003_1199340_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY68714.1|1199531_1200548_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1300768	1357979	4145812	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY66267.1|1300768_1301719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66268.1|1305465_1306077_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY66269.1|1306299_1307760_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY66270.1|1307856_1309449_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY66271.1|1309435_1309714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66272.1|1309772_1310060_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY66273.1|1310061_1311402_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY66274.1|1311497_1312187_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66275.1|1312199_1313630_+	MFS transporter	NA	NA	NA	NA	NA
AZY66276.1|1315354_1316176_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66277.1|1316186_1317758_+	amidohydrolase	NA	NA	NA	NA	NA
AZY66278.1|1317786_1318764_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66279.1|1318790_1319594_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY66280.1|1319590_1320385_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66281.1|1320392_1321628_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY66282.1|1321620_1322055_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY66283.1|1322804_1323755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66284.1|1324376_1326104_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY66285.1|1326215_1327574_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY66286.1|1327694_1327880_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66287.1|1327866_1328817_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66288.1|1328857_1329928_+	FUSC family protein	NA	NA	NA	NA	NA
AZY66289.1|1329950_1330829_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY66290.1|1331000_1331972_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66291.1|1332134_1332977_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66292.1|1333138_1333819_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY66293.1|1333812_1334982_+	amine oxidase	NA	NA	NA	NA	NA
AZY66294.1|1334978_1336010_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY66295.1|1336053_1337295_+	MFS transporter	NA	NA	NA	NA	NA
AZY66296.1|1337329_1338862_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY66297.1|1338942_1339566_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY66298.1|1339596_1340208_+	LysE family translocator	NA	NA	NA	NA	NA
AZY66299.1|1340243_1340714_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY66300.1|1341145_1342150_+	peptidase M20	NA	NA	NA	NA	NA
AZY66301.1|1342186_1343701_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66302.1|1343704_1344664_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66303.1|1344692_1345496_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66304.1|1345497_1347132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY66305.1|1347215_1348277_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY66306.1|1348475_1348745_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66307.1|1348748_1349273_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY66308.1|1349688_1350639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66309.1|1350635_1351706_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY66310.1|1351778_1352417_+	DedA family protein	NA	NA	NA	NA	NA
AZY66311.1|1352711_1352939_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY66312.1|1353061_1353775_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY66313.1|1354019_1354970_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66314.1|1355073_1355355_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66315.1|1355469_1356918_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY66316.1|1357028_1357979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1448212	1500365	4145812	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZY66398.1|1448212_1449163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66399.1|1449329_1449683_+	cytochrome C	NA	NA	NA	NA	NA
AZY66400.1|1449695_1450058_+	cytochrome	NA	NA	NA	NA	NA
AZY66401.1|1450099_1450525_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY66402.1|1450727_1451984_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY66403.1|1452182_1453163_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66404.1|1453312_1454554_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY66405.1|1454652_1455603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66406.1|1455611_1456307_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY66407.1|1459128_1459728_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY66408.1|1459738_1461904_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY66409.1|1461927_1463712_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY66410.1|1463711_1463801_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY66411.1|1464495_1464768_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY66412.1|1464767_1466834_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY66413.1|1466830_1467781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66414.1|1467879_1468830_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66415.1|1468945_1469278_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY66416.1|1469274_1469961_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY66417.1|1469947_1470907_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY68727.1|1470948_1473309_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY66418.1|1473308_1473941_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY66419.1|1474003_1475383_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY66420.1|1475429_1476785_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY66421.1|1477063_1477312_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66422.1|1477499_1477817_-	virulence factor	NA	NA	NA	NA	NA
AZY66423.1|1478089_1478605_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY66424.1|1478698_1478860_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66425.1|1478875_1479631_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY66426.1|1479969_1480176_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66427.1|1480183_1480843_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY66428.1|1481137_1483342_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY66429.1|1483452_1484676_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY66430.1|1484798_1485773_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66431.1|1485840_1487034_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY66432.1|1487048_1487849_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY66433.1|1487845_1489702_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY66434.1|1489698_1490304_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY66435.1|1490322_1491708_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY66436.1|1492433_1493660_+	transporter	NA	NA	NA	NA	NA
AZY66437.1|1493748_1494531_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY66438.1|1494629_1495580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66439.1|1495606_1496380_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY66440.1|1496391_1497633_+	MFS transporter	NA	NA	NA	NA	NA
AZY66441.1|1499414_1500365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1544290	1603153	4145812	transposase,protease,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZY68728.1|1544290_1544779_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY66489.1|1544896_1545475_+|protease	protease	protease	NA	NA	NA	NA
AZY66490.1|1545547_1545949_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY66491.1|1546047_1546998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66492.1|1547004_1548117_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY66493.1|1548803_1550006_+	MFS transporter	NA	NA	NA	NA	NA
AZY66494.1|1550209_1552870_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66495.1|1552882_1556287_+	nuclease	NA	NA	NA	NA	NA
AZY66496.1|1556954_1559180_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY66497.1|1559226_1559553_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY66498.1|1559603_1560212_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY66499.1|1560310_1561261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66500.1|1561330_1562095_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY66501.1|1562091_1562691_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68729.1|1562794_1563640_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY66502.1|1563705_1564332_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY66503.1|1564328_1565279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66504.1|1565265_1565454_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66505.1|1565377_1566499_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY66506.1|1566479_1567481_-	aminopeptidase	NA	NA	NA	NA	NA
AZY66507.1|1567586_1569098_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY66508.1|1569094_1570399_-	peptidase	NA	NA	NA	NA	NA
AZY66509.1|1570510_1571071_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY66510.1|1571338_1571893_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY66511.1|1572348_1572564_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY68730.1|1572818_1575416_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY66512.1|1575412_1576600_+	cupin	NA	NA	NA	NA	NA
AZY66513.1|1577258_1577873_+	fimbrial protein	NA	NA	NA	NA	NA
AZY66514.1|1577961_1579089_-	lipoprotein	NA	NA	NA	NA	NA
AZY66515.1|1579100_1580006_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY66516.1|1580898_1581849_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66517.1|1582030_1582783_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY66518.1|1582851_1583511_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY66519.1|1583507_1584236_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY66520.1|1584248_1586528_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY66521.1|1586552_1586756_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY66522.1|1586797_1587445_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY66523.1|1587565_1588483_-	cytochrome C	NA	NA	NA	NA	NA
AZY66524.1|1588479_1589193_-	cytochrome C	NA	NA	NA	NA	NA
AZY66525.1|1589430_1590201_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66526.1|1590205_1590805_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY66527.1|1591049_1592540_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY66528.1|1592598_1592883_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY66529.1|1592879_1593008_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66530.1|1593020_1593176_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66531.1|1593448_1594375_-	YicC family protein	NA	NA	NA	NA	NA
AZY66532.1|1594511_1595252_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY66533.1|1595418_1596795_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY66534.1|1596976_1597882_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY66535.1|1597916_1599656_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY66536.1|1599533_1601336_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY66537.1|1601453_1602104_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY66538.1|1602202_1603153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1648325	1703916	4145812	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY66569.1|1648325_1649276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66570.1|1649334_1650108_+	oxidoreductase	NA	NA	NA	NA	NA
AZY66571.1|1650100_1651657_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY66572.1|1651653_1652604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66573.1|1653930_1654533_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66574.1|1654772_1655474_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY66575.1|1655467_1656250_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY66576.1|1656434_1657385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66577.1|1657483_1658221_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY66578.1|1658410_1659169_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66579.1|1659215_1660205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66580.1|1660382_1661351_-	transporter	NA	NA	NA	NA	NA
AZY66581.1|1662890_1663859_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY66582.1|1663867_1664809_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY66583.1|1665282_1666293_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68734.1|1666283_1667798_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY66584.1|1667794_1669141_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68735.1|1669143_1670178_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY66585.1|1670227_1671853_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY66586.1|1672405_1673356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66587.1|1673460_1674408_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68736.1|1674461_1676276_-	histidine kinase	NA	NA	NA	NA	NA
AZY66588.1|1676268_1676943_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY66589.1|1677072_1680147_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY66590.1|1680160_1680460_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY68737.1|1680774_1681398_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY66591.1|1681641_1682511_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY66592.1|1682488_1683433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68738.1|1683518_1684490_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY68739.1|1684557_1685331_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66593.1|1685327_1686524_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY66594.1|1686554_1687505_-	hydrolase	NA	NA	NA	NA	NA
AZY66595.1|1687726_1688416_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY66596.1|1688480_1689236_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66597.1|1689287_1690280_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66598.1|1690289_1691243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68740.1|1691358_1692321_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66599.1|1693722_1694151_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66600.1|1694147_1695098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68741.1|1695391_1696114_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY66601.1|1696552_1697740_-	MFS transporter	NA	NA	NA	NA	NA
AZY66602.1|1697743_1698124_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66603.1|1699843_1700815_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66604.1|1700828_1701542_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66605.1|1701546_1702464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66606.1|1702570_1702867_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66607.1|1702965_1703916_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	1936680	2006332	4145812	transposase,tRNA	Staphylococcus_phage(16.67%)	57	NA	NA
AZY66782.1|1936680_1939338_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY66783.1|1939415_1940618_-	MFS transporter	NA	NA	NA	NA	NA
AZY66784.1|1940614_1941127_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68750.1|1941249_1941588_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY66785.1|1941963_1942914_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66786.1|1943077_1944973_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY66787.1|1945086_1945254_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY66788.1|1945317_1945554_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY66789.1|1945922_1947122_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY66790.1|1948637_1949588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66791.1|1950039_1951041_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66792.1|1951213_1952071_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66793.1|1952067_1953330_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY66794.1|1953430_1953805_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY66795.1|1953853_1955065_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY66796.1|1955149_1955920_+	spermidine synthase	NA	NA	NA	NA	NA
AZY66797.1|1956033_1956798_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68751.1|1956913_1958050_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY66798.1|1958046_1958853_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY66799.1|1960597_1961569_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66800.1|1961725_1962238_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY66801.1|1962396_1963371_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66802.1|1964371_1965166_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY68752.1|1965191_1965998_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY66803.1|1966108_1966699_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY66804.1|1966709_1967888_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66805.1|1967990_1968365_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY66806.1|1968617_1969949_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY66807.1|1970015_1973246_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY66808.1|1974736_1975483_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY66809.1|1975567_1976029_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY66810.1|1976066_1977125_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY66811.1|1977087_1978917_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY66812.1|1978956_1979529_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY66813.1|1980953_1981865_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY66814.1|1982093_1983416_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY66815.1|1983461_1983845_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66816.1|1983775_1984411_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66817.1|1984370_1985321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66818.1|1986191_1987064_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY66819.1|1987141_1988281_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY66820.1|1988630_1989896_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY66821.1|1989901_1990429_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY66822.1|1990433_1991252_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY66823.1|1991251_1991974_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY66824.1|1991995_1992310_+	ferredoxin	NA	NA	NA	NA	NA
AZY66825.1|1992306_1993476_+	CoA transferase	NA	NA	NA	NA	NA
AZY66826.1|1993506_1994382_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY66827.1|1994378_1995698_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY66828.1|1995770_1996967_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY66829.1|1996977_1998465_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66830.1|2001059_2001959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66831.1|2002096_2003062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY66832.1|2003160_2004111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66833.1|2004154_2004346_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66834.1|2004332_2005283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66835.1|2005381_2006332_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2017828	2140455	4145812	transposase,protease,tRNA	Erysipelothrix_phage(11.76%)	107	NA	NA
AZY66847.1|2017828_2018779_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66848.1|2019916_2020213_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66849.1|2020387_2021740_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY68754.1|2021882_2022899_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY66850.1|2025977_2026883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66851.1|2028013_2030230_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY66852.1|2030226_2031288_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66853.1|2031316_2032291_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66854.1|2032242_2033061_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY66855.1|2033073_2033682_-	peptidase S16	NA	NA	NA	NA	NA
AZY66856.1|2033856_2034252_+	VOC family protein	NA	NA	NA	NA	NA
AZY66857.1|2034270_2035710_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY66858.1|2035738_2036086_+	GFA family protein	NA	NA	NA	NA	NA
AZY66859.1|2036104_2037055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66860.1|2037707_2038658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66861.1|2038741_2040559_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY66862.1|2040632_2041280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66863.1|2041292_2042222_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY66864.1|2042391_2042856_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66865.1|2043103_2043784_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66866.1|2043832_2045524_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY66867.1|2045539_2046091_-	ATPase	NA	NA	NA	NA	NA
AZY66868.1|2046087_2046459_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY66869.1|2046571_2047408_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY66870.1|2047418_2047943_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY66871.1|2048040_2048220_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY66872.1|2048349_2049381_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66873.1|2049454_2049811_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY68755.1|2049800_2050676_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY66874.1|2050774_2051659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66875.1|2051680_2052976_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY66876.1|2056431_2058297_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY66877.1|2060381_2060678_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66878.1|2060852_2062205_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY68756.1|2062347_2063364_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY68757.1|2065342_2066356_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY66879.1|2066442_2067348_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66880.1|2067504_2067849_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66881.1|2068006_2068465_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY66882.1|2068478_2070695_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY66883.1|2070691_2071753_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66884.1|2071781_2072756_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66885.1|2072707_2073526_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY66886.1|2073538_2074147_-	peptidase S16	NA	NA	NA	NA	NA
AZY66887.1|2074321_2074717_+	VOC family protein	NA	NA	NA	NA	NA
AZY66888.1|2074735_2076175_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY66889.1|2076203_2076551_+	GFA family protein	NA	NA	NA	NA	NA
AZY66890.1|2076569_2077520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66891.1|2078172_2079123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66892.1|2079206_2081024_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY66893.1|2081097_2081745_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66894.1|2081757_2082687_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY66895.1|2082856_2083321_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66896.1|2083568_2084249_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66897.1|2084297_2085989_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY66898.1|2086004_2086556_-	ATPase	NA	NA	NA	NA	NA
AZY66899.1|2086552_2086924_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY66900.1|2087036_2087873_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY66901.1|2087883_2088408_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY66902.1|2088505_2088685_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY66903.1|2088814_2089846_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY66904.1|2089919_2090276_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY68758.1|2090265_2091141_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY66905.1|2091239_2092124_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY66906.1|2092145_2093441_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY68759.1|2095129_2096650_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY66907.1|2096907_2098773_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY66908.1|2099818_2100769_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66909.1|2101741_2102101_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY66910.1|2102088_2103525_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY66911.1|2103521_2104175_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY66912.1|2104171_2105371_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY66913.1|2105468_2106743_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY66914.1|2106739_2107690_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66915.1|2107856_2108831_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68760.1|2108827_2108971_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY66916.1|2110592_2111255_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY66917.1|2111257_2111434_+	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY66918.1|2111430_2112369_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY66919.1|2112460_2113951_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY66920.1|2114036_2114189_+	lipoprotein	NA	NA	NA	NA	NA
AZY66921.1|2114202_2114442_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66922.1|2114537_2115281_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY66923.1|2115289_2115814_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY66924.1|2115912_2116836_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY66925.1|2116832_2117594_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY66926.1|2117609_2118695_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZY66927.1|2118707_2118908_+	hypothetical protein	NA	NA	NA	NA	NA
AZY66928.1|2118894_2119845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66929.1|2119943_2120894_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66930.1|2120853_2121267_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY66931.1|2121551_2121851_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68761.1|2122260_2124429_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY66932.1|2125228_2127259_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY66933.1|2127278_2127491_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY66934.1|2127768_2128308_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY66935.1|2128421_2129729_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY66936.1|2129793_2130951_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY66937.1|2131134_2132034_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY66938.1|2132052_2133357_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY66939.1|2133322_2134429_-	GTPase HflX	NA	NA	NA	NA	NA
AZY66940.1|2134516_2134753_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY66941.1|2134891_2135962_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY66942.1|2135965_2137321_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY66943.1|2137347_2138508_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY66944.1|2138510_2139149_-	hypothetical protein	NA	NA	NA	NA	NA
AZY66945.1|2139150_2140455_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 17
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2187368	2242604	4145812	transposase,protease	Lake_Baikal_phage(25.0%)	50	NA	NA
AZY66982.1|2187368_2188319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66983.1|2188519_2189329_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY66984.1|2189453_2190404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66985.1|2190400_2191294_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY66986.1|2191418_2191613_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY66987.1|2191612_2191954_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY66988.1|2191963_2193826_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY66989.1|2193955_2194468_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY66990.1|2194470_2194794_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY66991.1|2194795_2195206_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY66992.1|2195243_2196455_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY66993.1|2196472_2196985_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY66994.1|2197200_2197692_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY66995.1|2197944_2199981_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY66996.1|2200058_2201261_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY66997.1|2201311_2202040_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY66998.1|2203597_2204548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY66999.1|2205118_2205331_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67000.1|2205348_2206080_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67001.1|2206114_2206756_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY67002.1|2206748_2207465_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY67003.1|2209629_2210406_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY67004.1|2210427_2211585_-	thiolase	NA	NA	NA	NA	NA
AZY67005.1|2211581_2212013_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67006.1|2212009_2212813_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY67007.1|2212826_2213282_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY67008.1|2213294_2214266_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67009.1|2214331_2215555_-	CoA transferase	NA	NA	NA	NA	NA
AZY67010.1|2215782_2216733_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67011.1|2216856_2219310_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY67012.1|2219498_2220803_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY67013.1|2220907_2221561_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY67014.1|2221563_2222874_-	trigger factor	NA	NA	NA	NA	NA
AZY67015.1|2223052_2223631_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY67016.1|2223742_2223943_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY67017.1|2224288_2224855_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY67018.1|2224938_2225142_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY67019.1|2225448_2225769_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67020.1|2225810_2226092_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67021.1|2226166_2227423_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY67022.1|2227805_2228135_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY67023.1|2229705_2230527_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY67024.1|2230526_2231666_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY67025.1|2231672_2232569_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY67026.1|2232565_2234491_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY67027.1|2234850_2237463_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY67028.1|2237515_2239816_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY67029.1|2239812_2241021_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY67030.1|2241282_2241657_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67031.1|2241653_2242604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2245711	2299981	4145812	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
AZY67034.1|2245711_2248573_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY67035.1|2248575_2249082_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY67036.1|2249186_2250395_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY67037.1|2250396_2251335_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67038.1|2251496_2251970_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY67039.1|2251966_2252917_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67040.1|2252903_2253083_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67041.1|2253027_2253468_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY67042.1|2253596_2254826_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY67043.1|2254864_2255686_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY67044.1|2255739_2256891_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY67045.1|2256982_2257471_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY67046.1|2259997_2262571_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY67047.1|2262641_2265215_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY67048.1|2265480_2265681_+	CsbD family protein	NA	NA	NA	NA	NA
AZY67049.1|2265712_2265874_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY67050.1|2265931_2266270_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY67051.1|2266418_2267369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67052.1|2267467_2268418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67053.1|2268516_2269236_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY68763.1|2269312_2269861_+	arylesterase	NA	NA	NA	NA	NA
AZY67054.1|2269842_2271858_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY67055.1|2272040_2272790_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY67056.1|2272802_2273666_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY67057.1|2273669_2275085_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY67058.1|2275218_2275947_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY67059.1|2276085_2276286_-	copper chaperone	NA	NA	NA	NA	NA
AZY67060.1|2276461_2276860_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY67061.1|2276883_2278284_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY68764.1|2278402_2279155_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67062.1|2279443_2280121_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67063.1|2280147_2280927_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY67064.1|2280923_2281808_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY68765.1|2281825_2282515_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY67065.1|2282589_2283348_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY67066.1|2283473_2284121_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY68766.1|2284388_2285405_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY67067.1|2285502_2286543_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY67068.1|2286677_2287970_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY67069.1|2289329_2289713_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY67070.1|2289730_2290318_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY67071.1|2290355_2291306_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67072.1|2291404_2291965_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY67073.1|2291961_2292507_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67074.1|2292702_2293731_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67075.1|2293771_2295112_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY67076.1|2295220_2296225_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67077.1|2296331_2298932_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY67078.1|2299030_2299981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2546564	2604808	4145812	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZY67284.1|2546564_2547515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67285.1|2547994_2548651_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY67286.1|2548665_2550333_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY67287.1|2550335_2550965_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67288.1|2551176_2552271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67289.1|2552415_2553228_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY67290.1|2553231_2554935_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY67291.1|2554985_2556116_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY67292.1|2556302_2557379_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY68778.1|2557460_2558111_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY67293.1|2558125_2559559_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY67294.1|2559812_2560631_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67295.1|2560627_2561332_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY67296.1|2562231_2563347_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67297.1|2563380_2563755_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67298.1|2563777_2564935_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY67299.1|2564947_2565181_-	lipoprotein	NA	NA	NA	NA	NA
AZY67300.1|2565815_2568785_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY67301.1|2568799_2569009_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY67302.1|2569160_2569790_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67303.1|2569786_2571904_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY67304.1|2571900_2572581_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY67305.1|2572577_2573138_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY67306.1|2573144_2574242_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY67307.1|2574379_2574988_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY67308.1|2574984_2576277_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY67309.1|2576290_2576833_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY67310.1|2576842_2577679_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY67311.1|2577712_2578774_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY67312.1|2578815_2579868_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY67313.1|2579883_2580186_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67314.1|2580327_2581278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67315.1|2581456_2583151_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY67316.1|2583147_2584233_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY67317.1|2584280_2585180_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67318.1|2585190_2585835_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY67319.1|2586856_2590099_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY67320.1|2590109_2591207_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY67321.1|2591469_2592453_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY67322.1|2592551_2593502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67323.1|2593600_2594551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67324.1|2594560_2595250_-	VIT family protein	NA	NA	NA	NA	NA
AZY67325.1|2595309_2595747_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY67326.1|2595792_2596686_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY67327.1|2596733_2597906_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY67328.1|2597902_2599057_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY67329.1|2599253_2599604_-	RnfH family protein	NA	NA	NA	NA	NA
AZY67330.1|2599593_2600028_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY67331.1|2600044_2600995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67332.1|2601142_2601610_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY67333.1|2601590_2602748_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY67334.1|2602813_2603740_-	paraslipin	NA	NA	NA	NA	NA
AZY67335.1|2603857_2604808_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2647088	2713588	4145812	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY67374.1|2647088_2648039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67375.1|2648408_2648981_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY67376.1|2648983_2649994_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY67377.1|2649986_2650487_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY67378.1|2650497_2650839_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY67379.1|2650850_2651642_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY67380.1|2651658_2651928_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY67381.1|2651950_2652739_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY68782.1|2652785_2653802_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY67382.1|2654018_2655461_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY67383.1|2655639_2657259_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY67384.1|2657379_2659200_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY67385.1|2659278_2660811_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY67386.1|2660844_2662491_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY67387.1|2662560_2663583_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY67388.1|2663600_2664734_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY67389.1|2664736_2665426_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY67390.1|2665425_2666211_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY67391.1|2666254_2667019_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY67392.1|2667057_2668479_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY67393.1|2668544_2669249_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY67394.1|2669296_2669716_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY67395.1|2669728_2670136_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY68783.1|2670319_2671030_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY67396.1|2671156_2671447_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY67397.1|2671464_2671947_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY67398.1|2676452_2677607_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY68784.1|2677912_2678929_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY67399.1|2679175_2679964_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67400.1|2680030_2680711_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY67401.1|2680707_2681478_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY67402.1|2681576_2682527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67403.1|2682582_2683500_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY67404.1|2683510_2684689_-	mandelate racemase	NA	NA	NA	NA	NA
AZY67405.1|2684708_2685704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67406.1|2687292_2687901_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY67407.1|2687888_2688929_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY67408.1|2688946_2689909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67409.1|2689905_2691099_-	CoA transferase	NA	NA	NA	NA	NA
AZY67410.1|2691095_2691893_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY67411.1|2691918_2692905_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67412.1|2692923_2694963_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY68785.1|2695164_2695845_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67413.1|2695858_2696770_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY67414.1|2696766_2697345_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY67415.1|2697483_2698389_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67416.1|2698396_2701816_+	nuclease	NA	NA	NA	NA	NA
AZY67417.1|2701803_2704404_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY67418.1|2705359_2705992_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67419.1|2706385_2707144_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67420.1|2707140_2708343_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY67421.1|2708530_2709481_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67422.1|2710388_2711534_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY68786.1|2711553_2712276_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY67423.1|2712392_2712572_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67424.1|2712637_2713588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	2917700	2998976	4145812	transposase,tRNA	Planktothrix_phage(16.67%)	58	NA	NA
AZY67588.1|2917700_2918651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67589.1|2918647_2919550_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67590.1|2919637_2920396_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY67591.1|2920408_2921557_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY67592.1|2921597_2923025_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY67593.1|2923254_2924469_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY67594.1|2924514_2927385_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY67595.1|2929795_2930284_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY67596.1|2930409_2933106_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY67597.1|2933260_2935543_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY67598.1|2935705_2936338_+	fimbrial protein	NA	NA	NA	NA	NA
AZY67599.1|2936436_2937387_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY67600.1|2937433_2937988_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY67601.1|2938055_2938901_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY67602.1|2938970_2939939_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY67603.1|2939938_2941735_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67604.1|2943634_2947561_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY67605.1|2947851_2948028_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67606.1|2948296_2951527_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY67607.1|2951808_2952636_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY67608.1|2952669_2953365_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY67609.1|2953357_2954638_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY67610.1|2954647_2955625_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68802.1|2955606_2957307_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.1	3.8e-50
AZY67611.1|2957409_2958513_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY67612.1|2958543_2959299_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY67613.1|2959305_2960826_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY67614.1|2960868_2961171_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67615.1|2961167_2961800_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67616.1|2961878_2963744_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY67617.1|2963740_2964556_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY67618.1|2964563_2965679_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67619.1|2966583_2967462_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY67620.1|2967461_2968286_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY67621.1|2968453_2969404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67622.1|2969586_2972466_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY67623.1|2972447_2973224_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY67624.1|2973316_2974780_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY67625.1|2974776_2975148_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY67626.1|2975165_2976479_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67627.1|2976515_2976974_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY67628.1|2977086_2978037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67629.1|2978033_2979047_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY67630.1|2979186_2980173_+	homoserine kinase	NA	NA	NA	NA	NA
AZY67631.1|2980216_2981017_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67632.1|2981819_2982770_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67633.1|2982921_2983524_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67634.1|2983542_2984175_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY67635.1|2984412_2986299_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY67636.1|2986317_2987160_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY67637.1|2987156_2988515_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY67638.1|2988735_2989530_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY67639.1|2989760_2991254_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY67640.1|2993766_2994807_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY67641.1|2994941_2995958_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY67642.1|2995979_2996837_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY68803.1|2996881_2997658_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY67643.1|2998025_2998976_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	3008044	3056981	4145812	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY67651.1|3008044_3008458_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY67652.1|3008498_3008816_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY67653.1|3008900_3009617_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68804.1|3009880_3011302_+	siroheme synthase	NA	NA	NA	NA	NA
AZY67654.1|3011368_3014116_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY68805.1|3014448_3015465_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY68806.1|3015800_3016442_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY67655.1|3016532_3017969_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY67656.1|3018126_3019200_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY67657.1|3019196_3020333_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY67658.1|3020476_3020821_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY67659.1|3020887_3022768_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY67660.1|3022817_3023753_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY68807.1|3024085_3025102_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY67661.1|3026039_3027467_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY67662.1|3027463_3028486_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY67663.1|3028475_3028949_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY67664.1|3029074_3029977_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY67665.1|3029973_3031617_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY68808.1|3031613_3032621_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY68809.1|3033451_3034468_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY67666.1|3034567_3035200_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY67667.1|3035208_3035598_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY67668.1|3035650_3036703_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY67669.1|3037566_3039273_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY67670.1|3039346_3039847_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY67671.1|3039861_3041919_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY67672.1|3041945_3042239_-	response regulator	NA	NA	NA	NA	NA
AZY67673.1|3042340_3043288_-	motility protein MotB	NA	NA	NA	NA	NA
AZY67674.1|3043300_3044176_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY67675.1|3044296_3044857_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY67676.1|3044891_3045215_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY67677.1|3045650_3046388_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY67678.1|3046686_3047637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67679.1|3047880_3048144_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY67680.1|3048217_3048499_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67681.1|3048515_3049376_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY67682.1|3049372_3049708_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67683.1|3049761_3050412_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY67684.1|3052092_3053037_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67685.1|3053082_3053400_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67686.1|3053402_3054341_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY67687.1|3054518_3055004_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY67688.1|3055022_3055571_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY67689.1|3055847_3056981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	3068588	3209156	4145812	holin,transposase	Bacillus_virus(11.11%)	117	NA	NA
AZY67698.1|3068588_3069539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67699.1|3069581_3070757_+	flagellin FliC	NA	NA	NA	NA	NA
AZY67700.1|3070978_3072769_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY67701.1|3072781_3074443_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY67702.1|3074455_3077161_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY67703.1|3077453_3079208_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY67704.1|3079204_3079831_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY67705.1|3079827_3080679_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY67706.1|3080754_3082869_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY67707.1|3083019_3083670_+	SCO family protein	NA	NA	NA	NA	NA
AZY67708.1|3083815_3084067_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY67709.1|3084136_3085519_-	multidrug transporter	NA	NA	NA	NA	NA
AZY67710.1|3085515_3088695_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY68811.1|3089502_3090420_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67711.1|3090471_3091203_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY67712.1|3091262_3091835_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY68812.1|3093343_3094360_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY67713.1|3094497_3095547_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY67714.1|3095651_3096602_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67715.1|3096700_3097651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67716.1|3097746_3098472_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY67717.1|3098682_3099063_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY67718.1|3099368_3100241_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY67719.1|3100248_3100629_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67720.1|3100782_3102057_-	radical SAM protein	NA	NA	NA	NA	NA
AZY68813.1|3103544_3104453_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY67721.1|3105250_3106315_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY67722.1|3108151_3109186_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67723.1|3109375_3110017_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY67724.1|3110099_3111926_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY67725.1|3112169_3113099_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY67726.1|3113098_3113848_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY67727.1|3113919_3114834_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY67728.1|3114853_3115999_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY67729.1|3116059_3116971_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY67730.1|3117051_3118002_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67731.1|3118100_3118685_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY67732.1|3118719_3119709_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY67733.1|3119705_3120647_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY67734.1|3120643_3121864_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY67735.1|3121906_3122221_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY67736.1|3122412_3122772_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY67737.1|3122773_3124504_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY67738.1|3124676_3125348_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY67739.1|3125362_3126691_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY67740.1|3126687_3127587_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY67741.1|3127673_3128759_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY67742.1|3128751_3129885_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY67743.1|3129884_3132566_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY67744.1|3132936_3133518_+	OmpA family protein	NA	NA	NA	NA	NA
AZY67745.1|3133595_3134369_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY67746.1|3134365_3135043_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY67747.1|3135258_3136440_+	MFS transporter	NA	NA	NA	NA	NA
AZY67748.1|3136916_3137174_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67749.1|3137212_3137395_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY67750.1|3137424_3138375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68814.1|3138504_3138897_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY67751.1|3139173_3140085_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY67752.1|3140209_3141184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67753.1|3141180_3142131_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67754.1|3142229_3143315_-	DNA polymerase IV	NA	NA	NA	NA	NA
AZY67755.1|3143412_3143823_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY67756.1|3144438_3146352_+	S9 family peptidase	NA	NA	NA	NA	NA
AZY67757.1|3146487_3149100_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZY67758.1|3149101_3149836_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY67759.1|3149999_3151181_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY67760.1|3151177_3151390_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67761.1|3151386_3152367_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY68815.1|3152412_3153240_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY67762.1|3153386_3155204_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY67763.1|3155258_3155642_+	ferredoxin	NA	NA	NA	NA	NA
AZY67764.1|3155638_3156589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67765.1|3156701_3156953_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67766.1|3157146_3157362_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67767.1|3157458_3158577_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY67768.1|3158696_3158909_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67769.1|3159068_3159290_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67770.1|3159342_3160293_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67771.1|3161469_3162840_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY67772.1|3162872_3163664_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67773.1|3163676_3164732_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67774.1|3164757_3165633_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67775.1|3165738_3165987_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67776.1|3166021_3167476_-	carboxylase	NA	NA	NA	NA	NA
AZY67777.1|3167472_3167994_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY67778.1|3168022_3169375_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY67779.1|3169598_3172487_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZY67780.1|3174631_3175933_+	phospholipase	NA	NA	NA	NA	NA
AZY67781.1|3175947_3176664_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY67782.1|3176945_3177626_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY67783.1|3177637_3177805_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67784.1|3177913_3178066_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67785.1|3178153_3178813_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY67786.1|3179193_3181044_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY67787.1|3181040_3181991_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67788.1|3183154_3184870_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY67789.1|3184880_3185372_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY67790.1|3185444_3186461_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY67791.1|3186628_3187408_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY67792.1|3187426_3187954_-	lipoprotein	NA	NA	NA	NA	NA
AZY67793.1|3187952_3188159_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67794.1|3188247_3188517_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY67795.1|3188607_3190767_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY67796.1|3190887_3191607_+	lipoprotein	NA	NA	NA	NA	NA
AZY67797.1|3191603_3192554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67798.1|3192694_3193912_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY67799.1|3193905_3194517_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY67800.1|3195150_3196128_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY67801.1|3196271_3197018_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY67802.1|3197039_3197486_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY67803.1|3198273_3200505_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY67804.1|3200527_3201328_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67805.1|3201609_3202842_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY67806.1|3202952_3203942_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67807.1|3203972_3205361_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY67808.1|3206959_3207943_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY68816.1|3208139_3209156_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	3273614	3346776	4145812	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY67862.1|3273614_3274565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67863.1|3274561_3275581_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY67864.1|3275590_3278299_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY67865.1|3278446_3279103_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY67866.1|3279201_3280152_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67867.1|3280257_3281193_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY67868.1|3281392_3283087_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY67869.1|3283121_3284048_+	VOC family protein	NA	NA	NA	NA	NA
AZY68819.1|3284116_3285214_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67870.1|3285232_3286096_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY67871.1|3286107_3286890_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY67872.1|3286886_3288005_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY67873.1|3288001_3289534_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY67874.1|3289574_3290582_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY67875.1|3290726_3291449_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67876.1|3291464_3292487_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY67877.1|3292803_3293538_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67878.1|3293622_3295368_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY67879.1|3295364_3296117_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY67880.1|3296161_3297118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67881.1|3297206_3297773_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67882.1|3297780_3298641_-	aminotransferase	NA	NA	NA	NA	NA
AZY67883.1|3298670_3299414_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY67884.1|3299430_3300114_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY67885.1|3300951_3301866_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67886.1|3301930_3302839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67887.1|3302929_3304354_-	protein CyaE	NA	NA	NA	NA	NA
AZY67888.1|3304355_3305678_-	protein CyaD	NA	NA	NA	NA	NA
AZY67889.1|3305674_3307813_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY67890.1|3307890_3313011_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY68820.1|3313197_3313377_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67891.1|3313459_3314047_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY67892.1|3314062_3315544_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY67893.1|3315598_3317452_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67894.1|3317714_3319052_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY67895.1|3319086_3321084_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY67896.1|3321101_3323150_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY67897.1|3323280_3324147_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY67898.1|3324415_3325381_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY67899.1|3325495_3326644_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY67900.1|3327068_3327380_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY67901.1|3327413_3327674_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY67902.1|3327823_3328957_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY67903.1|3329027_3330164_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY67904.1|3330329_3331124_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY67905.1|3331186_3331630_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY67906.1|3331745_3332696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67907.1|3332682_3332871_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67908.1|3332818_3333226_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY67909.1|3333298_3335494_+	DNA methylase	NA	NA	NA	NA	NA
AZY67910.1|3335715_3336666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67911.1|3336625_3337150_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY67912.1|3337281_3338253_+	FecR family protein	NA	NA	NA	NA	NA
AZY68821.1|3338372_3340817_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY67913.1|3340832_3341423_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY67914.1|3341666_3342617_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67915.1|3342774_3344040_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY67916.1|3344073_3345171_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY67917.1|3345825_3346776_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	3358064	3458176	4145812	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(13.79%)	108	NA	NA
AZY67927.1|3358064_3359015_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67928.1|3359746_3360124_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY67929.1|3360108_3360810_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67930.1|3360953_3361646_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY67931.1|3361645_3362749_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY67932.1|3362858_3365231_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY67933.1|3365227_3366787_+	chaperone SurA	NA	NA	NA	NA	NA
AZY67934.1|3366811_3367609_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY67935.1|3367640_3368786_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY67936.1|3368890_3370333_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY68822.1|3370335_3371424_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67937.1|3373702_3374653_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67938.1|3374639_3374858_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67939.1|3375782_3376340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY67940.1|3376315_3376666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67941.1|3376834_3377629_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY67942.1|3377625_3378675_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY67943.1|3378674_3379364_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY67944.1|3379450_3379948_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY67945.1|3379979_3381296_-	protein TolB	NA	NA	NA	NA	NA
AZY67946.1|3382322_3382781_-	protein TolR	NA	NA	NA	NA	NA
AZY67947.1|3382780_3383461_-	protein TolQ	NA	NA	NA	NA	NA
AZY67948.1|3383463_3383892_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY67949.1|3383944_3385675_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY67950.1|3385740_3386313_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY67951.1|3386293_3386980_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY67952.1|3387335_3388007_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY67953.1|3388013_3388214_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67954.1|3388556_3388838_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67955.1|3388834_3389368_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY67956.1|3389349_3389901_-	lysozyme	NA	NA	NA	NA	NA
AZY67957.1|3389879_3390122_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67958.1|3390126_3390939_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67959.1|3390938_3391202_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67960.1|3391420_3391837_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67961.1|3391841_3395798_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY67962.1|3395790_3396180_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY67963.1|3396176_3396710_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY67964.1|3396777_3397137_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67965.1|3397146_3399759_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY67966.1|3399784_3400075_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY67967.1|3400092_3400422_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY67968.1|3400431_3400950_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY67969.1|3401204_3401705_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY67970.1|3401712_3402135_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67971.1|3402131_3402530_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY67972.1|3402526_3402922_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY67973.1|3402921_3403122_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67974.1|3403123_3403606_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY67975.1|3403668_3403920_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67976.1|3403929_3404577_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY67977.1|3404594_3405545_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67978.1|3405973_3406576_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY67979.1|3406698_3406941_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY68823.1|3406946_3408002_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY67980.1|3408030_3409449_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY67981.1|3409451_3410729_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY67982.1|3410715_3411165_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY67983.1|3411840_3412791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67984.1|3412808_3413030_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67985.1|3413044_3413743_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67986.1|3413735_3414056_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68824.1|3414535_3415147_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY67987.1|3415212_3415425_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67988.1|3415676_3416627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY67989.1|3416725_3417799_-	hypothetical protein	NA	NA	NA	NA	NA
AZY67990.1|3417966_3418761_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY67991.1|3418800_3419325_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY67992.1|3419317_3421060_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY67993.1|3421269_3422028_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY67994.1|3422030_3422738_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY67995.1|3422754_3423636_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY67996.1|3423646_3424405_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68825.1|3424373_3425129_+	hypothetical protein	NA	NA	NA	NA	NA
AZY67997.1|3425198_3426617_+	amidase	NA	NA	NA	NA	NA
AZY67998.1|3426638_3427289_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY67999.1|3427422_3427758_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY68000.1|3427846_3428797_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68001.1|3428873_3430694_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY68002.1|3430698_3431772_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY68003.1|3431894_3432863_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY68004.1|3432936_3433848_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY68005.1|3433866_3434439_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY68006.1|3434519_3435068_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY68007.1|3435067_3436657_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY68008.1|3436726_3436966_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY68009.1|3437006_3438038_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY68010.1|3438097_3439279_-	monooxygenase	NA	NA	NA	NA	NA
AZY68011.1|3439375_3439828_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68012.1|3439837_3441178_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY68013.1|3441494_3442532_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68014.1|3442913_3443273_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68826.1|3443356_3444298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68015.1|3444372_3445323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68016.1|3445616_3446711_+	porin	NA	NA	NA	NA	NA
AZY68017.1|3446792_3447674_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY68018.1|3447695_3448535_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY68019.1|3448610_3450128_+	peptidase	NA	NA	NA	NA	NA
AZY68020.1|3450224_3451325_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY68021.1|3451341_3451764_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY68022.1|3451786_3451999_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY68023.1|3452045_3452966_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY68827.1|3453229_3453898_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68024.1|3453900_3454230_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY68025.1|3454436_3455870_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY68026.1|3455881_3456265_-	thioredoxin	NA	NA	NA	NA	NA
AZY68027.1|3456326_3457127_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68028.1|3457225_3458176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025526	Bordetella pertussis strain D665 chromosome, complete genome	4145812	4044880	4109792	4145812	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY68556.1|4044880_4045366_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68557.1|4045584_4046565_+	protein BugT	NA	NA	NA	NA	NA
AZY68558.1|4046831_4047641_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY68559.1|4047680_4048361_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY68560.1|4048354_4048813_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY68561.1|4048824_4049187_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY68562.1|4049269_4049953_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY68563.1|4050008_4050317_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY68564.1|4050335_4050650_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY68565.1|4050646_4053121_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY68566.1|4053128_4054520_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY68567.1|4054516_4054702_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY68568.1|4054680_4055382_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY68569.1|4055378_4056200_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY68850.1|4056180_4057305_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY68570.1|4057297_4058317_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY68571.1|4058522_4059557_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY68851.1|4059657_4060449_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY68572.1|4060531_4060906_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY68573.1|4060883_4062293_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY68574.1|4062285_4063668_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY68575.1|4064002_4065607_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY68576.1|4065642_4066656_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY68577.1|4066666_4067593_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY68578.1|4067983_4068934_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68579.1|4069103_4070330_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY68580.1|4070529_4071396_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY68581.1|4071388_4072351_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY68582.1|4072451_4073402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68583.1|4073500_4074451_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68584.1|4074549_4075500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68585.1|4075496_4076990_-	RND transporter	NA	NA	NA	NA	NA
AZY68586.1|4076986_4080094_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY68587.1|4080090_4083159_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY68588.1|4083155_4084406_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY68589.1|4084586_4085348_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY68590.1|4085380_4086031_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY68591.1|4086033_4086873_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY68592.1|4087113_4087857_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68593.1|4087939_4088287_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68594.1|4088384_4089227_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY68595.1|4089271_4090159_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY68596.1|4090185_4090374_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY68597.1|4090471_4091929_+	MFS transporter	NA	NA	NA	NA	NA
AZY68598.1|4091915_4093442_+	glycerol kinase	NA	NA	NA	NA	NA
AZY68599.1|4093460_4093928_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68600.1|4093927_4094950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY68601.1|4095070_4095811_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY68602.1|4095865_4096966_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68603.1|4096967_4098158_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68604.1|4098277_4099294_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY68605.1|4099612_4100284_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY68606.1|4100280_4101189_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY68607.1|4101400_4102048_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY68608.1|4105899_4106976_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY68609.1|4106986_4107796_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY68610.1|4107885_4108659_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY68611.1|4108841_4109792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
