assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004010855.1_ASM401085v1	CP032665	Streptococcus pyogenes strain MGAS27961 chromosome, complete genome	1	604803-604965	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	 Type I-U?,Type I-U,Type I-C	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP032665.1_593268_593832_+,NA	NA|60aa|up_9|CP032665.1_593092_593272_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP032665.1_593268_593832_+	NA	NA|883aa|up_7|CP032665.1_593833_596482_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP032665.1_596635_599044_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP032665.1_599176_599905_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP032665.1_599904_601800_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP032665.1_601804_602653_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP032665.1_602654_603329_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP032665.1_603325_604351_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP032665.1_604361_604655_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP032665.1_605125_605836_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP032665.1_605848_606472_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP032665.1_606514_607621_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|CP032665.1_607708_608449_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|CP032665.1_608445_610179_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|CP032665.1_610251_611331_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|CP032665.1_611344_612061_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|CP032665.1_612226_612700_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|CP032665.1_612841_613522_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|CP032665.1_613795_615031_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_004010855.1_ASM401085v1	CP032665	Streptococcus pyogenes strain MGAS27961 chromosome, complete genome	2	1056898-1057132	1,1,2	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-C,Type II-A,Type II-B	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAACA	36,29,37	0	0	NA	NA	II-A:II-A:II-A	3,3,2	3	TypeII-C,TypeII-A,TypeII-B	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP032665.1_1055506_1055611_-,NA|214aa|down_8|CP032665.1_1066994_1067636_-	NA|276aa|up_9|CP032665.1_1047569_1048397_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP032665.1_1048393_1049203_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP032665.1_1049219_1049711_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP032665.1_1049729_1050155_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP032665.1_1050361_1051381_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP032665.1_1051510_1051948_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|349aa|up_3|CP032665.1_1052133_1053180_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP032665.1_1053614_1055447_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP032665.1_1055506_1055611_-	NA	NA|378aa|up_0|CP032665.1_1055615_1056749_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP032665.1_1057233_1057896_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP032665.1_1057885_1058227_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP032665.1_1058223_1059093_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP032665.1_1059092_1063199_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP032665.1_1063643_1064276_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP032665.1_1064275_1065040_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP032665.1_1065039_1065792_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP032665.1_1065801_1066932_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP032665.1_1066994_1067636_-	NA	NA|452aa|down_9|CP032665.1_1067759_1069115_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004010855.1_ASM401085v1	CP032665	Streptococcus pyogenes strain MGAS27961 chromosome, complete genome	3	1811895-1811991	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP032665.1_1807000_1807174_-,NA|538aa|up_8|CP032665.1_1807460_1809074_-,NA|174aa|up_7|CP032665.1_1809063_1809585_-,NA|123aa|up_6|CP032665.1_1809594_1809963_-,NA|64aa|up_5|CP032665.1_1809871_1810063_-,NA|111aa|up_4|CP032665.1_1810062_1810395_-,NA|61aa|up_3|CP032665.1_1810406_1810589_-,NA|90aa|up_2|CP032665.1_1810809_1811079_-,NA	NA|58aa|up_9|CP032665.1_1807000_1807174_-	NA	NA|538aa|up_8|CP032665.1_1807460_1809074_-	NA	NA|174aa|up_7|CP032665.1_1809063_1809585_-	NA	NA|123aa|up_6|CP032665.1_1809594_1809963_-	NA	NA|64aa|up_5|CP032665.1_1809871_1810063_-	NA	NA|111aa|up_4|CP032665.1_1810062_1810395_-	NA	NA|61aa|up_3|CP032665.1_1810406_1810589_-	NA	NA|90aa|up_2|CP032665.1_1810809_1811079_-	NA	NA|189aa|up_1|CP032665.1_1811108_1811675_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP032665.1_1811690_1811879_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP032665.1_1812047_1812491_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP032665.1_1812670_1813834_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP032665.1_1813990_1814602_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP032665.1_1815331_1815604_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP032665.1_1815620_1816988_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP032665.1_1817017_1817470_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP032665.1_1817466_1819443_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP032665.1_1819532_1821431_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP032665.1_1821554_1821872_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP032665.1_1822647_1823769_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
