assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004010915.1_ASM401091v1	CP022444	Klebsiella sp. LY chromosome, complete genome	1	1132635-1132736	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	GAGAGGGAGAAAGAGAGTCCGCACGCAGATTCCATA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA|80aa|up_8|CP022444.1_1124210_1124450_-,NA	NA|170aa|up_9|CP022444.1_1123660_1124170_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|80aa|up_8|CP022444.1_1124210_1124450_-	NA	NA|289aa|up_7|CP022444.1_1124446_1125313_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|433aa|up_6|CP022444.1_1125395_1126694_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|132aa|up_5|CP022444.1_1126857_1127253_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|304aa|up_4|CP022444.1_1127249_1128161_-	PRK11761, cysM, cysteine synthase CysM	NA|365aa|up_3|CP022444.1_1128279_1129374_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|292aa|up_2|CP022444.1_1129363_1130239_-	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW	NA|278aa|up_1|CP022444.1_1130238_1131072_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|339aa|up_0|CP022444.1_1131071_1132088_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|300aa|down_0|CP022444.1_1132793_1133693_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|192aa|down_1|CP022444.1_1133787_1134363_-	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional	NA|150aa|down_2|CP022444.1_1134424_1134874_-	pfam11143, DUF2919, Protein of unknown function (DUF2919)	NA|142aa|down_3|CP022444.1_1134860_1135286_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|291aa|down_4|CP022444.1_1135497_1136370_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|300aa|down_5|CP022444.1_1136369_1137269_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|760aa|down_6|CP022444.1_1137322_1139602_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|319aa|down_7|CP022444.1_1139896_1140853_+	PRK12346, PRK12346, transaldolase A; Provisional	NA|665aa|down_8|CP022444.1_1140869_1142864_+	PRK12753, PRK12753, transketolase; Reviewed	NA|349aa|down_9|CP022444.1_1142853_1143900_-	pfam06674, DUF1176, Protein of unknown function (DUF1176)
GCA_004010915.1_ASM401091v1	CP022444	Klebsiella sp. LY chromosome, complete genome	2	2160623-2160737	2	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	GACCGTCGGGTAGCCCGGATAAGGCGCT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|508aa|up_9|CP022444.1_2150160_2151684_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|285aa|up_8|CP022444.1_2151729_2152584_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|352aa|up_7|CP022444.1_2152853_2153909_-	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|223aa|up_6|CP022444.1_2153901_2154570_-	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|508aa|up_5|CP022444.1_2154572_2156096_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|199aa|up_4|CP022444.1_2156278_2156875_+	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional	NA|92aa|up_3|CP022444.1_2156864_2157140_+	PRK10910, PRK10910, DUF1145 family protein	NA|120aa|up_2|CP022444.1_2157153_2157513_-	pfam10694, DUF2500, Protein of unknown function (DUF2500)	NA|209aa|up_1|CP022444.1_2157654_2158281_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|737aa|up_0|CP022444.1_2158359_2160570_+	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	NA|82aa|down_0|CP022444.1_2160760_2161006_-	PRK00299, PRK00299, sulfurtransferase TusA	NA|222aa|down_1|CP022444.1_2161212_2161878_+	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter	NA|186aa|down_2|CP022444.1_2161951_2162509_+	PRK11615, PRK11615, hypothetical protein; Provisional	NA|407aa|down_3|CP022444.1_2162509_2163730_-	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional	NA|350aa|down_4|CP022444.1_2163863_2164913_+	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed	NA|127aa|down_5|CP022444.1_2164909_2165290_-	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional	NA|113aa|down_6|CP022444.1_2165289_2165628_-	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional	NA|552aa|down_7|CP022444.1_2165624_2167280_-	PRK13279, arnT, lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA|301aa|down_8|CP022444.1_2167279_2168182_-	PRK15394, PRK15394, 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional	NA|662aa|down_9|CP022444.1_2168178_2170164_-	PRK08125, PRK08125, bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
GCA_004010915.1_ASM401091v1	CP022444	Klebsiella sp. LY chromosome, complete genome	3	2358578-2358698	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,csa3,cas3,RT,WYL	Unclear	CCCGGGCTACGCACAGCGCAGAACTGTAGCCCTGCTAAGC	40	0	0	NA	NA	NA	1	1	Unclear	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|707aa|up_9|CP022444.1_2347216_2349337_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_8|CP022444.1_2349498_2350188_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_7|CP022444.1_2350193_2352275_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|337aa|up_6|CP022444.1_2352323_2353334_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|up_5|CP022444.1_2353484_2354231_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|143aa|up_4|CP022444.1_2354231_2354660_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|200aa|up_3|CP022444.1_2354772_2355372_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|256aa|up_2|CP022444.1_2355481_2356249_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|435aa|up_1|CP022444.1_2356340_2357645_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|255aa|up_0|CP022444.1_2357709_2358474_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|330aa|down_0|CP022444.1_2358722_2359712_-	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein	NA|82aa|down_1|CP022444.1_2359864_2360110_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|284aa|down_2|CP022444.1_2360552_2361404_+	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|504aa|down_3|CP022444.1_2361425_2362937_+	PRK00047, glpK, glycerol kinase GlpK	NA|401aa|down_4|CP022444.1_2363051_2364254_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|down_5|CP022444.1_2364538_2365930_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|572aa|down_6|CP022444.1_2366080_2367796_+	pfam05170, AsmA, AsmA family	NA|520aa|down_7|CP022444.1_2368047_2369607_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|460aa|down_8|CP022444.1_2369619_2370999_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|241aa|down_9|CP022444.1_2371616_2372339_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCA_004010915.1_ASM401091v1	CP022444	Klebsiella sp. LY chromosome, complete genome	4	3215395-3215504	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	TAAAAAAGGCAACTTGCGTTGCCTTTTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA,NA	NA|426aa|up_9|CP022444.1_3203855_3205133_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|up_8|CP022444.1_3205548_3206328_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|up_7|CP022444.1_3206437_3207760_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|up_6|CP022444.1_3207812_3209036_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|up_5|CP022444.1_3209139_3209859_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|339aa|up_4|CP022444.1_3209948_3210965_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|216aa|up_3|CP022444.1_3210964_3211612_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|324aa|up_2|CP022444.1_3211716_3212688_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|up_1|CP022444.1_3212697_3214080_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|411aa|up_0|CP022444.1_3214101_3215334_+	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|556aa|down_0|CP022444.1_3215509_3217177_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|646aa|down_1|CP022444.1_3217405_3219343_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|110aa|down_2|CP022444.1_3219431_3219761_+	PRK01381, PRK01381, trp operon repressor	NA|172aa|down_3|CP022444.1_3219747_3220263_-	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|216aa|down_4|CP022444.1_3220376_3221024_+	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|290aa|down_5|CP022444.1_3221020_3221890_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|158aa|down_6|CP022444.1_3222099_3222573_+	PRK10756, PRK10756, protein CreA	NA|230aa|down_7|CP022444.1_3222585_3223275_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|475aa|down_8|CP022444.1_3223274_3224699_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|452aa|down_9|CP022444.1_3224761_3226117_+	PRK11715, PRK11715, cell envelope integrity protein CreD
GCA_004010915.1_ASM401091v1	CP022444	Klebsiella sp. LY chromosome, complete genome	5	4047554-4047650	5	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas3,RT,WYL	Orphan	CGCGGCTTTGTTGAATAAATAAGATTTCG	29	1	1	4047583-4047621	CP022443.1_4020-4058	NA	1	1	Orphan	DEDDh,DinG,csa3,cas3,RT,WYL	NA|139aa|up_0|CP022444.1_4047128_4047545_-,NA	NA|634aa|up_9|CP022444.1_4037606_4039508_-	PRK10795, PRK10795, penicillin-binding protein 2; Provisional	NA|156aa|up_8|CP022444.1_4039535_4040003_-	TIGR00246, Ribosomal_RNA_large_subunit_methyltransferase_H, rRNA large subunit m3Psi methyltransferase RlmH	NA|106aa|up_7|CP022444.1_4040006_4040324_-	PRK11538, PRK11538, ribosome silencing factor	NA|210aa|up_6|CP022444.1_4040547_4041177_-	PRK15004, PRK15004, adenosylcobalamin/alpha-ribazole phosphatase	NA|214aa|up_5|CP022444.1_4041249_4041891_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|344aa|up_4|CP022444.1_4041892_4042924_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|197aa|up_3|CP022444.1_4042923_4043514_-	PRK10796, PRK10796, LPS-assembly lipoprotein RlpB; Provisional	NA|861aa|up_2|CP022444.1_4043528_4046111_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|161aa|up_1|CP022444.1_4046337_4046820_+	PRK11032, PRK11032, zinc ribbon-containing protein	NA|139aa|up_0|CP022444.1_4047128_4047545_-	NA	NA|323aa|down_0|CP022444.1_4047680_4048649_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|457aa|down_1|CP022444.1_4048670_4050041_-	pfam05860, Haemagg_act, haemagglutination activity domain	NA|557aa|down_2|CP022444.1_4050104_4051775_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|242aa|down_3|CP022444.1_4052075_4052801_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|225aa|down_4|CP022444.1_4052800_4053475_-	PRK15107, PRK15107, glutamate/aspartate ABC transporter permease GltK	NA|247aa|down_5|CP022444.1_4053474_4054215_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|304aa|down_6|CP022444.1_4054379_4055291_-	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional	NA|513aa|down_7|CP022444.1_4055645_4057184_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|293aa|down_8|CP022444.1_4057310_4058189_-	PRK15094, PRK15094, magnesium/cobalt transporter CorC	NA|158aa|down_9|CP022444.1_4058335_4058809_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional
