assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004011015.1_ASM401101v1	CP025573	Escherichia coli strain E-1246 chromosome, complete genome	1	773230-773371	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	NA|62aa|up_5|CP025573.1_769234_769420_+,NA|80aa|up_4|CP025573.1_769683_769923_-,NA|64aa|down_4|CP025573.1_779793_779985_-	NA|244aa|up_9|CP025573.1_763751_764483_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|up_8|CP025573.1_764497_766948_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_7|CP025573.1_767007_767574_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_6|CP025573.1_767963_769247_-	PRK05614, gltA, citrate synthase	NA|62aa|up_5|CP025573.1_769234_769420_+	NA	NA|80aa|up_4|CP025573.1_769683_769923_-	NA	NA|130aa|up_3|CP025573.1_769955_770345_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|CP025573.1_770338_770686_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|CP025573.1_770685_772452_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|CP025573.1_772467_773184_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|CP025573.1_773533_776335_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|CP025573.1_776349_777567_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|CP025573.1_777660_778827_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|CP025573.1_778826_779696_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|64aa|down_4|CP025573.1_779793_779985_-	NA	NA|49aa|down_5|CP025573.1_779944_780091_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|302aa|down_6|CP025573.1_780361_781267_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_7|CP025573.1_781300_781903_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_8|CP025573.1_781912_783565_-	PRK15392, PRK15392, class I fumarate hydratase	NA|434aa|down_9|CP025573.1_783672_784974_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]
GCA_004011015.1_ASM401101v1	CP025573	Escherichia coli strain E-1246 chromosome, complete genome	2	3403217-3403672	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	NA,NA	NA|254aa|up_9|CP025573.1_3395029_3395791_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP025573.1_3395771_3396821_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP025573.1_3396817_3397297_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP025573.1_3397296_3398007_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP025573.1_3398025_3398337_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP025573.1_3398530_3398854_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP025573.1_3398903_3399509_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP025573.1_3399508_3400936_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP025573.1_3400937_3401846_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP025573.1_3402097_3403135_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP025573.1_3403768_3404062_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP025573.1_3404058_3404982_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP025573.1_3404978_3405629_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP025573.1_3405610_3406357_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP025573.1_3406367_3407423_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP025573.1_3407437_3407974_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|CP025573.1_3407970_3409533_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|CP025573.1_3409630_3412330_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|CP025573.1_3412524_3412677_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP025573.1_3412941_3413676_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_004011015.1_ASM401101v1	CP025573	Escherichia coli strain E-1246 chromosome, complete genome	3	3430810-3431631	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	Orphan	DEDDh,c2c9_V-U4,DinG,PrimPol,RT,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,TnsE_C	NA,NA	NA|87aa|up_9|CP025573.1_3419281_3419542_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|CP025573.1_3419558_3420134_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|CP025573.1_3420268_3421617_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|CP025573.1_3421716_3422577_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP025573.1_3422573_3423353_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP025573.1_3423330_3424668_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP025573.1_3424761_3426216_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP025573.1_3426285_3427071_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP025573.1_3427389_3428667_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP025573.1_3428693_3430172_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP025573.1_3431969_3432641_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|CP025573.1_3432934_3433807_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|CP025573.1_3433866_3435165_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|CP025573.1_3435252_3436890_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|CP025573.1_3437117_3437909_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|CP025573.1_3437980_3438316_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|CP025573.1_3438315_3438564_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|CP025573.1_3438641_3440876_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|CP025573.1_3440923_3442225_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|CP025573.1_3442281_3445038_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
