The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028130	Rathayibacter iranicus strain NCCPB 2253 chromosome, complete genome	3436894	716809	798496	3436894	transposase,integrase,tRNA	Tupanvirus(27.27%)	56	717063:717079	793630:793646
AZZ55042.1|716809_717073_+|transposase	transposase	transposase	NA	NA	NA	NA
717063:717079	attL	GTTTTGCATAAGCCTCA	NA	NA	NA	NA
AZZ55043.1|717176_718019_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AZZ55044.1|718634_719873_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AZZ57297.1|719986_721150_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AZZ55045.1|721113_724617_+	hypothetical protein	NA	A0A2K9KZV5	Tupanvirus	26.1	4.6e-34
AZZ55046.1|724583_726491_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	26.3	5.6e-10
AZZ55047.1|726468_728298_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	23.4	6.0e-09
AZZ55048.1|728290_735964_+	LLM class flavin-dependent oxidoreductase	NA	D0R7J2	Paenibacillus_phage	31.5	6.2e-23
AZZ55049.1|735967_739963_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZZ55050.1|739959_744453_+	KR domain-containing protein	NA	D0R7J2	Paenibacillus_phage	38.3	1.6e-50
AZZ55051.1|745321_746089_-	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
AZZ55052.1|746879_747518_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZZ55053.1|747521_747890_+	hypothetical protein	NA	NA	NA	NA	NA
AZZ55054.1|747981_748788_+	hypothetical protein	NA	NA	NA	NA	NA
AZZ55055.1|748905_749130_+	hypothetical protein	NA	NA	NA	NA	NA
AZZ55056.1|749317_749587_+	DNA-binding protein	NA	NA	NA	NA	NA
AZZ55057.1|749623_750802_+|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	36.8	1.7e-52
AZZ55058.1|751904_752777_+	dihydropteroate synthase	NA	NA	NA	NA	NA
AZZ55059.1|752773_753517_+	pyrimidine reductase family protein	NA	NA	NA	NA	NA
AZZ57298.1|753537_754980_-	amino acid permease	NA	NA	NA	NA	NA
AZZ55060.1|755238_756333_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
AZZ55061.1|756349_757552_-	MFS transporter	NA	NA	NA	NA	NA
AZZ55062.1|757548_757989_-	DUF2510 domain-containing protein	NA	NA	NA	NA	NA
AZZ55063.1|758066_760610_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.2	5.6e-106
AZZ55064.1|760612_761167_+	HIT domain-containing protein	NA	NA	NA	NA	NA
AZZ55065.1|761190_762108_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
AZZ55066.1|761998_762760_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
AZZ55067.1|764040_764802_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZZ55068.1|764838_765420_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZZ55069.1|765416_766022_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZZ55070.1|766018_767056_+	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA	NA
AZZ55071.1|767045_767549_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AZZ55072.1|767651_769376_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZZ55073.1|769375_770386_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	30.8	3.8e-21
AZZ55074.1|770389_770731_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZZ55075.1|770810_773063_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.4	4.9e-13
AZZ55076.1|773041_773605_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZZ57299.1|773681_774905_-	DUF349 domain-containing protein	NA	NA	NA	NA	NA
AZZ55077.1|775091_775898_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZZ55078.1|776038_777457_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	43.5	1.2e-86
AZZ55079.1|777687_778317_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
AZZ55080.1|778580_779792_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZZ55081.1|780130_780547_+	DUF948 domain-containing protein	NA	NA	NA	NA	NA
AZZ55082.1|780614_780806_+	hypothetical protein	NA	NA	NA	NA	NA
AZZ55083.1|780858_783516_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	33.3	3.0e-54
AZZ57300.1|783519_784095_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZZ55084.1|783928_785299_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZZ55085.1|785295_786150_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AZZ55086.1|786172_787390_+	chorismate synthase	NA	NA	NA	NA	NA
AZZ55087.1|787415_787994_+	shikimate kinase	NA	NA	NA	NA	NA
AZZ55088.1|787990_789070_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
AZZ57301.1|789199_790924_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA	NA
AZZ55089.1|792732_793497_+|transposase	transposase	transposase	NA	NA	NA	NA
AZZ55090.1|794368_796579_-	hypothetical protein	NA	NA	NA	NA	NA
793630:793646	attR	TGAGGCTTATGCAAAAC	NA	NA	NA	NA
AZZ55091.1|796915_797206_-	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
AZZ55092.1|797731_798496_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP028130	Rathayibacter iranicus strain NCCPB 2253 chromosome, complete genome	3436894	1842946	1849370	3436894		Lactococcus_phage(33.33%)	8	NA	NA
AZZ55906.1|1842946_1843327_-	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	40.3	1.3e-06
AZZ57410.1|1843447_1843642_+	hypothetical protein	NA	NA	NA	NA	NA
AZZ55907.1|1843731_1844421_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	38.2	1.0e-38
AZZ55908.1|1844493_1846149_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	24.4	7.8e-16
AZZ55909.1|1846331_1847954_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.9	2.6e-149
AZZ55910.1|1848133_1848337_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	57.8	9.8e-14
AZZ55911.1|1848507_1849044_-	hypothetical protein	NA	NA	NA	NA	NA
AZZ55912.1|1849088_1849370_-	DUF3263 domain-containing protein	NA	A0A1B3AZ99	Gordonia_phage	38.2	1.0e-05
