assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004015305.1_ASM401530v1	CP025830	Akkermansia muciniphila strain AMDK-15 chromosome, complete genome	1	2107182-2107277	1	CRISPRCasFinder	no		cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	Orphan	GTCGCACCCTCACGGGCGCGTGAATTGAAGT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA|74aa|up_3|CP025830.1_2103355_2103577_-,NA	NA|292aa|up_9|CP025830.1_2097019_2097895_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|261aa|up_8|CP025830.1_2097962_2098745_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|286aa|up_7|CP025830.1_2098886_2099744_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|380aa|up_6|CP025830.1_2099740_2100880_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|377aa|up_5|CP025830.1_2100892_2102023_-	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain	NA|400aa|up_4|CP025830.1_2102021_2103221_+	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional	NA|74aa|up_3|CP025830.1_2103355_2103577_-	NA	NA|88aa|up_2|CP025830.1_2103657_2103921_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|203aa|up_1|CP025830.1_2104081_2104690_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|618aa|up_0|CP025830.1_2104839_2106693_+	PLN02470, PLN02470, acetolactate synthase	NA|278aa|down_0|CP025830.1_2107471_2108305_+	pfam04450, BSP, Peptidase of plants and bacteria	NA|299aa|down_1|CP025830.1_2108625_2109522_+	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional	NA|218aa|down_2|CP025830.1_2109661_2110315_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|858aa|down_3|CP025830.1_2110339_2112913_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|555aa|down_4|CP025830.1_2113103_2114768_+	cd16144, ARS_like, uncharacterized arylsulfatase subfamily	NA|296aa|down_5|CP025830.1_2115083_2115971_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|401aa|down_6|CP025830.1_2116051_2117254_+	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase	NA|646aa|down_7|CP025830.1_2117277_2119215_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|367aa|down_8|CP025830.1_2119285_2120386_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|713aa|down_9|CP025830.1_2120705_2122844_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional
GCA_004015305.1_ASM401530v1	CP025830	Akkermansia muciniphila strain AMDK-15 chromosome, complete genome	2	2536864-2538283	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	 or Type II-C?, Type II-B,Type II-B,Type II-C,Type II-A	GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	21,21,16	21	orTypeII-C?,TypeII-B,TypeII-B,TypeII-C,TypeII-A	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA,NA	NA|840aa|up_9|CP025830.1_2521798_2524318_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|342aa|up_8|CP025830.1_2524338_2525364_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|395aa|up_7|CP025830.1_2525529_2526714_-	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]	NA|680aa|up_6|CP025830.1_2526913_2528953_-	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like	NA|614aa|up_5|CP025830.1_2528961_2530803_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|276aa|up_4|CP025830.1_2530886_2531714_+	pfam07885, Ion_trans_2, Ion channel	NA|199aa|up_3|CP025830.1_2531801_2532398_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|556aa|up_2|CP025830.1_2532445_2534113_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|190aa|up_1|CP025830.1_2534958_2535528_-	cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)	NA|357aa|up_0|CP025830.1_2535721_2536792_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	cas2|104aa|down_0|CP025830.1_2538343_2538655_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|312aa|down_1|CP025830.1_2538642_2539578_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1106aa|down_2|CP025830.1_2539588_2542906_-	pfam13395, HNH_4, HNH endonuclease	NA|369aa|down_3|CP025830.1_2543271_2544378_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|147aa|down_4|CP025830.1_2544470_2544911_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|429aa|down_5|CP025830.1_2545045_2546332_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|310aa|down_6|CP025830.1_2546368_2547298_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|205aa|down_7|CP025830.1_2547316_2547931_+	PRK00043, thiE, thiamine phosphate synthase	NA|272aa|down_8|CP025830.1_2547978_2548794_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|100aa|down_9|CP025830.1_2548762_2549062_+	COG1694, MazG, Predicted pyrophosphatase [General function prediction only]
GCA_004015305.1_ASM401530v1	CP025830	Akkermansia muciniphila strain AMDK-15 chromosome, complete genome	3	2613288-2613921	2,3,2	CRT,CRISPRCasFinder,PILER-CR	no		cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	Orphan	GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCT	33,33,20	0	0	NA	NA	NA:NA:NA	9,6,7	9	Orphan	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA|294aa|up_7|CP025830.1_2608523_2609405_-,NA|94aa|up_6|CP025830.1_2609397_2609679_-,NA|72aa|up_3|CP025830.1_2611317_2611533_-,NA|88aa|up_0|CP025830.1_2612808_2613072_+,NA|332aa|down_2|CP025830.1_2619677_2620673_-,NA|90aa|down_4|CP025830.1_2621242_2621512_+,NA|68aa|down_6|CP025830.1_2624202_2624406_+	NA|115aa|up_9|CP025830.1_2606826_2607171_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|168aa|up_8|CP025830.1_2607351_2607855_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|294aa|up_7|CP025830.1_2608523_2609405_-	NA	NA|94aa|up_6|CP025830.1_2609397_2609679_-	NA	NA|121aa|up_5|CP025830.1_2609675_2610038_-	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein	NA|425aa|up_4|CP025830.1_2610034_2611309_-	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein	NA|72aa|up_3|CP025830.1_2611317_2611533_-	NA	NA|207aa|up_2|CP025830.1_2611847_2612468_+	PHA00662, PHA00662, hypothetical protein	NA|100aa|up_1|CP025830.1_2612512_2612812_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|88aa|up_0|CP025830.1_2612808_2613072_+	NA	NA|385aa|down_0|CP025830.1_2614317_2615472_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|1194aa|down_1|CP025830.1_2615937_2619519_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|332aa|down_2|CP025830.1_2619677_2620673_-	NA	NA|150aa|down_3|CP025830.1_2620672_2621122_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|90aa|down_4|CP025830.1_2621242_2621512_+	NA	NA|752aa|down_5|CP025830.1_2621646_2623902_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|68aa|down_6|CP025830.1_2624202_2624406_+	NA	NA|900aa|down_7|CP025830.1_2624398_2627098_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|192aa|down_8|CP025830.1_2627140_2627716_-	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|199aa|down_9|CP025830.1_2628018_2628615_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain
