The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	22805	94516	2991907	transposase,protease	unidentified_phage(37.5%)	60	NA	NA
QAB19496.1|22805_23735_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	1.1e-19
QAB19497.1|24119_24665_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAB19498.1|24855_25317_+	universal stress protein	NA	NA	NA	NA	NA
QAB19499.1|25605_28209_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
QAB19500.1|29248_30024_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QAB19501.1|32838_34899_+	hypothetical protein	NA	NA	NA	NA	NA
QAB19502.1|35151_35367_+	hypothetical protein	NA	NA	NA	NA	NA
QAB19503.1|35772_36771_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QAB19504.1|36874_37795_+	ribokinase	NA	NA	NA	NA	NA
QAB19505.1|37797_38193_+	D-ribose pyranase	NA	NA	NA	NA	NA
QAB19506.1|38222_39107_+	ribose transporter RbsU	NA	NA	NA	NA	NA
QAB19507.1|39411_40215_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.1	1.0e-08
QAB19508.1|40248_42114_+	HTH domain-containing protein	NA	NA	NA	NA	NA
QAB19509.1|42113_42620_+	transcriptional regulator	NA	NA	NA	NA	NA
QAB19510.1|42624_43176_+	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
QAB19511.1|43199_44219_+	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
QAB19512.1|44246_44624_+	PTS sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
QAB19513.1|44994_46806_+	pyruvate oxidase	NA	NA	NA	NA	NA
QAB19514.1|46978_47404_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
QAB19515.1|47485_49240_+	pyruvate oxidase	NA	NA	NA	NA	NA
QAB19516.1|51003_51237_+	hypothetical protein	NA	NA	NA	NA	NA
QAB19517.1|51627_53742_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	38.9	3.1e-118
QAB19518.1|54109_54706_+	accessory regulator AgrB	NA	NA	NA	NA	NA
QAB19519.1|54686_54815_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
QAB19520.1|54824_56087_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
QAB19521.1|56079_56823_+	response regulator transcription factor	NA	NA	NA	NA	NA
QAB19522.1|57178_57616_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
QAB22110.1|57773_59228_-	catalase	NA	A0A2K9L572	Tupanvirus	46.7	5.1e-104
QAB19523.1|59573_59819_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QAB19524.1|59835_59970_+	hypothetical protein	NA	NA	NA	NA	NA
QAB19525.1|60164_60713_+	folate family ECF transporter S component	NA	NA	NA	NA	NA
QAB19526.1|62402_62774_-	hypothetical protein	NA	NA	NA	NA	NA
QAB19527.1|63085_64015_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	8.5e-20
QAB19528.1|64287_65493_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
QAB19529.1|65631_66318_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
QAB19530.1|66351_67230_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
QAB19531.1|67502_68366_+	ROK family protein	NA	NA	NA	NA	NA
QAB19532.1|68571_69303_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
QAB19533.1|69317_70514_+	cation:proton antiporter	NA	NA	NA	NA	NA
QAB19534.1|70510_72019_+	Na+/proline symporter	NA	A0A219Y9P9	Aeromonas_phage	25.3	1.5e-18
QAB19535.1|72196_73033_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAB19536.1|73891_74299_+	DUF1694 domain-containing protein	NA	NA	NA	NA	NA
QAB19537.1|74347_75169_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAB19538.1|75326_77717_-	phosphoketolase family protein	NA	NA	NA	NA	NA
QAB19539.1|77883_78651_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
QAB19540.1|78977_79448_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QAB19541.1|79482_79779_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA	NA
QAB19542.1|79813_81085_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
QAB22111.1|81165_82224_+	sorbitol dehydrogenase	NA	NA	NA	NA	NA
QAB19543.1|82328_82952_+	HAD family hydrolase	NA	NA	NA	NA	NA
QAB19544.1|83091_85143_-	PRD domain-containing protein	NA	NA	NA	NA	NA
QAB19545.1|85313_85772_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QAB19546.1|85784_86081_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
QAB19547.1|86104_87475_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
QAB19548.1|87541_88195_+	fructose-6-phosphate aldolase	NA	R9TM64	Synechococcus_phage	49.3	3.3e-50
QAB19549.1|88224_90222_+	transketolase	NA	NA	NA	NA	NA
QAB22112.1|90294_91110_+	sugar-phosphatase	NA	NA	NA	NA	NA
QAB19550.1|91627_92803_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
QAB19551.1|93464_93560_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
QAB19552.1|93586_94516_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	8.5e-20
>prophage 2
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	757958	766472	2991907		Synechococcus_phage(33.33%)	9	NA	NA
QAB20118.1|757958_758444_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.0	2.3e-16
QAB20119.1|758427_759558_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QAB20120.1|759560_760292_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	37.3	1.6e-37
QAB20121.1|760293_760548_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QAB20122.1|760547_761228_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QAB20123.1|761220_763440_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	4.5e-144
QAB20124.1|763424_764879_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	3.3e-50
QAB20125.1|764875_765901_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.0	2.7e-59
QAB20126.1|765893_766472_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.9	1.3e-21
>prophage 3
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	920723	1010894	2991907	capsid,plate,terminase,integrase,tail,head,transposase,portal,holin	Lactobacillus_phage(38.46%)	104	957772:957793	1013069:1013089
QAB20256.1|920723_921498_+|transposase	IS5-like element ISLpl3 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	53.2	2.1e-27
QAB20257.1|921665_922856_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
QAB20258.1|923079_923310_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20259.1|923335_923557_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20260.1|923703_924168_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAB20261.1|924389_925283_+	NlpC/P60 family protein	NA	NA	NA	NA	NA
QAB20262.1|925349_926213_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAB20263.1|926774_926939_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20264.1|926997_927741_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QAB20265.1|927846_929034_+	MFS transporter	NA	NA	NA	NA	NA
QAB20266.1|929247_929565_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20267.1|929640_930201_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20268.1|932462_933401_-	EamA family transporter	NA	NA	NA	NA	NA
QAB20269.1|933465_933867_+	ACT domain-containing protein	NA	NA	NA	NA	NA
QAB20270.1|933876_935220_+	PFL family protein	NA	NA	NA	NA	NA
QAB20271.1|935592_936321_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.1	2.1e-34
QAB20272.1|936317_937841_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
QAB20273.1|938136_939318_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	30.1	1.0e-46
QAB20274.1|939552_940410_+	glucose transporter GlcU	NA	NA	NA	NA	NA
QAB20275.1|940522_941452_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	1.1e-19
QAB20276.1|941478_941580_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
QAB20277.1|941677_943030_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAB20278.1|943455_943647_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20279.1|944051_946046_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	41.3	7.2e-32
QAB20280.1|947613_949377_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	40.5	6.9e-95
QAB20281.1|950009_950141_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20282.1|950311_950455_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20283.1|950485_950617_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20284.1|950694_950826_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20285.1|950856_950988_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20286.1|951144_954285_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAB20287.1|954384_956361_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20288.1|956415_956901_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QAB20289.1|956949_957222_-	hypothetical protein	NA	NA	NA	NA	NA
QAB20290.1|957246_957480_-	hypothetical protein	NA	NA	NA	NA	NA
957772:957793	attL	TTGGCTGTCCTTTTGGCTGACT	NA	NA	NA	NA
QAB20291.1|957959_959117_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	34.8	6.6e-54
957772:957793	attL	TTGGCTGTCCTTTTGGCTGACT	NA	NA	NA	NA
QAB20292.1|959195_959840_-	transcriptional regulator	NA	NA	NA	NA	NA
QAB20293.1|959988_960168_+	DNA-binding protein	NA	E9LUT5	Lactobacillus_phage	87.9	4.3e-21
QAB20294.1|960211_960319_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20295.1|960449_960668_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20296.1|960664_961465_+	DNA replication protein	NA	NA	NA	NA	NA
QAB20297.1|961464_962859_+	virulence protein	NA	Q4ZD27	Staphylococcus_phage	35.8	4.6e-70
QAB20298.1|963002_963422_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20299.1|963446_963731_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22132.1|963717_964056_+|head,tail	head-tail adaptor protein	head,tail	A0A2P0ZLF0	Lactobacillus_phage	33.7	5.1e-07
QAB20300.1|964048_964438_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	44.7	3.0e-19
QAB20301.1|964493_964712_-	hypothetical protein	NA	NA	NA	NA	NA
QAB20302.1|965501_965975_+|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
QAB20303.1|965971_967675_+|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	40.5	2.7e-120
QAB20304.1|967628_967829_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20305.1|967829_968930_+|portal	phage portal protein	portal	A0A2H4J9Q5	uncultured_Caudovirales_phage	34.6	5.1e-48
QAB20306.1|968926_970453_+|capsid	phage major capsid protein	capsid	B8R651	Lactobacillus_phage	26.2	1.2e-42
QAB20307.1|970592_970862_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
QAB20308.1|971034_971415_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20309.1|971497_971803_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20310.1|972222_972429_+	hypothetical protein	NA	NA	NA	NA	NA
971895:971916	attR	TTGGCTGTCCTTTTGGCTGACT	NA	NA	NA	NA
QAB20311.1|972779_973901_-|integrase	site-specific integrase	integrase	D6PSS4	Lactobacillus_phage	32.4	1.3e-46
971895:971916	attR	TTGGCTGTCCTTTTGGCTGACT	NA	NA	NA	NA
QAB20312.1|974822_975542_-	hypothetical protein	NA	NA	NA	NA	NA
QAB20313.1|975752_976463_-	hypothetical protein	NA	NA	NA	NA	NA
QAB20314.1|976522_976936_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0M4RD70	Bacillus_phage	31.3	2.6e-05
QAB20315.1|976947_977310_-	helix-turn-helix domain-containing protein	NA	A0A2R2ZGJ3	Clostridioides_phage	48.4	1.7e-08
QAB22133.1|977438_977666_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAB20316.1|977844_978150_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
QAB20317.1|978217_978730_+	transcriptional regulator	NA	D6PST4	Lactobacillus_phage	43.5	4.7e-28
QAB20318.1|978797_978968_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20319.1|979100_979214_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20320.1|979228_979762_+	hypothetical protein	NA	E9LUU0	Lactobacillus_phage	58.9	4.7e-55
QAB20321.1|979773_980739_+	hypothetical protein	NA	A6M982	Geobacillus_virus	53.6	3.8e-63
QAB20322.1|980819_981752_+	DUF4373 domain-containing protein	NA	A0A0P0HRQ2	Lactobacillus_phage	45.4	1.8e-57
QAB20323.1|981748_982036_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20324.1|982032_982551_+	hypothetical protein	NA	O03915	Lactobacillus_phage	55.3	4.1e-40
QAB20325.1|982547_982928_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20326.1|982920_983118_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20327.1|983110_983527_+	hypothetical protein	NA	A0A2K9VC36	Lactobacillus_phage	36.8	2.0e-13
QAB20328.1|983826_984294_+	hypothetical protein	NA	B4XYT9	Lactobacillus_phage	39.2	4.1e-15
QAB20329.1|985313_986372_+	hypothetical protein	NA	Q6SE88	Lactobacillus_prophage	41.6	6.4e-72
QAB20330.1|986349_986724_+	hypothetical protein	NA	Q6SE87	Lactobacillus_prophage	48.4	1.4e-26
QAB20331.1|986790_986991_+	hypothetical protein	NA	E9LUP6	Lactobacillus_phage	56.0	1.1e-06
QAB20332.1|987096_987423_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1Q1PVT7	Staphylococcus_phage	36.0	2.4e-09
QAB20333.1|987483_987993_+|terminase	terminase small subunit	terminase	O03926	Lactobacillus_phage	61.9	1.3e-46
QAB20334.1|988196_989495_+|terminase	PBSX family phage terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	50.1	3.7e-114
QAB20335.1|989484_991152_+|portal	phage portal protein	portal	D2IZF6	Enterococcus_phage	32.6	8.3e-66
QAB20336.1|991154_992099_+|head	phage head morphogenesis protein	head	NA	NA	NA	NA
QAB20337.1|992205_992853_+	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
QAB20338.1|992869_993922_+|capsid	phage capsid protein	capsid	A0A0S0N2Q7	Pseudomonas_phage	30.5	1.2e-33
QAB20339.1|993936_994302_+|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
QAB20340.1|994306_994630_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20341.1|994619_995174_+|tail	phage tail protein	tail	NA	NA	NA	NA
QAB20342.1|995175_995562_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
QAB20343.1|995573_996134_+|tail	phage tail protein	tail	NA	NA	NA	NA
QAB20344.1|996151_996640_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20345.1|996732_996969_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20346.1|1001275_1002013_+|tail	phage tail protein	tail	A0A1S5SA63	Streptococcus_phage	37.0	1.8e-41
QAB20347.1|1002012_1003875_+	endolysin	NA	A0A1X9IGI5	Lactococcus_phage	32.6	9.3e-50
QAB20348.1|1003879_1004872_+	SGNH/GDSL hydrolase family protein	NA	I6TFU2	Staphylococcus_virus	39.3	6.1e-40
QAB20349.1|1004886_1005501_+|plate	phage baseplate upper protein	plate	A0A1J0MFQ3	Staphylococcus_phage	49.3	1.6e-46
QAB20350.1|1005506_1006244_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20351.1|1006243_1006606_+	DUF2977 domain-containing protein	NA	NA	NA	NA	NA
QAB20352.1|1006697_1006826_+	XkdX family protein	NA	NA	NA	NA	NA
QAB20353.1|1008407_1008767_+	hypothetical protein	NA	NA	NA	NA	NA
QAB20354.1|1008766_1008940_+	XkdX family protein	NA	NA	NA	NA	NA
QAB20355.1|1009028_1010234_+	LysM peptidoglycan-binding domain-containing protein	NA	E9LUR8	Lactobacillus_phage	85.8	1.4e-192
QAB20356.1|1010233_1010497_+|holin	holin	holin	E9LUR9	Lactobacillus_phage	92.0	3.4e-35
QAB22134.1|1010510_1010894_+|holin	holin	holin	A0A2H4PBB2	Lactobacillus_phage	85.7	7.6e-15
1013069:1013089	attR	CCGTGCGGGTGATAAGTCGAC	NA	NA	NA	NA
>prophage 4
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	1845184	1855022	2991907		Lactobacillus_phage(87.5%)	9	NA	NA
QAB21126.1|1845184_1846180_-	glycosyltransferase	NA	S5FKN0	Shigella_phage	38.8	3.1e-52
QAB21127.1|1846806_1846944_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAB21128.1|1847039_1847480_+	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	99.3	8.0e-77
QAB21129.1|1847550_1848111_-	hypothetical protein	NA	A0A2P0ZL75	Lactobacillus_phage	100.0	2.7e-101
QAB21130.1|1848198_1850637_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	99.4	0.0e+00
QAB21131.1|1850639_1851254_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	100.0	6.3e-112
QAB21132.1|1851597_1852545_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	99.7	1.7e-177
QAB21133.1|1852730_1853702_+	peptidase S41	NA	A0A2P0ZL68	Lactobacillus_phage	98.8	2.0e-181
QAB21134.1|1853792_1855022_-	hypothetical protein	NA	A0A2P0ZL72	Lactobacillus_phage	97.7	2.7e-215
>prophage 5
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	2187686	2242725	2991907	bacteriocin,transposase,tRNA,integrase	Moumouvirus(18.18%)	42	2216331:2216352	2219102:2219123
QAB21411.1|2187686_2188016_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
QAB21412.1|2188224_2188893_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
QAB21413.1|2189644_2190409_-	YibE/F family protein	NA	NA	NA	NA	NA
QAB21414.1|2190405_2191656_-	YibE/F family protein	NA	NA	NA	NA	NA
QAB21415.1|2191619_2192621_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21416.1|2193040_2193805_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
QAB21417.1|2194157_2194484_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAB21418.1|2194675_2195557_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QAB21419.1|2195599_2197408_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.1	1.0e-77
QAB21420.1|2197665_2197881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAB21421.1|2198082_2198349_+	hypothetical protein	NA	NA	NA	NA	NA
QAB21422.1|2198399_2199632_+	hypothetical protein	NA	NA	NA	NA	NA
QAB21423.1|2199667_2201074_+	C69 family dipeptidase	NA	NA	NA	NA	NA
QAB21424.1|2201526_2202534_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	43.0	1.4e-63
QAB21425.1|2202572_2203868_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.2	4.2e-57
QAB21426.1|2204038_2204668_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
QAB21427.1|2204776_2205250_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QAB21428.1|2207604_2208531_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	25.8	4.2e-19
QAB21429.1|2209251_2210004_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAB21430.1|2210072_2210567_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21431.1|2210655_2210778_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21432.1|2214869_2215400_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
QAB21433.1|2215713_2216310_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QAB21434.1|2216317_2216905_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
2216331:2216352	attL	CTTGGGAGCAGCGTAAGCTAAA	NA	NA	NA	NA
QAB21435.1|2216915_2217833_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	44.7	2.7e-74
QAB21436.1|2217984_2219175_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	27.5	8.1e-15
2219102:2219123	attR	TTTAGCTTACGCTGCTCCCAAG	NA	NA	NA	NA
QAB21437.1|2223158_2224088_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	32.6	3.8e-20
QAB21438.1|2224812_2227347_-	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.4	3.5e-68
QAB21439.1|2227528_2228101_-	alpha-L-rhamnosidase	NA	NA	NA	NA	NA
QAB21440.1|2228900_2229911_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
QAB21441.1|2230042_2230873_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
QAB21442.1|2231046_2231487_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QAB21443.1|2231547_2231970_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QAB21444.1|2231984_2232167_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21445.1|2232179_2232725_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QAB21446.1|2232736_2232991_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QAB21447.1|2233231_2235079_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	23.7	5.8e-20
QAB21448.1|2235068_2235452_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21449.1|2236399_2237329_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	33.2	1.7e-20
QAB21450.1|2239758_2241057_+	MFS transporter	NA	NA	NA	NA	NA
QAB21451.1|2241133_2242009_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	28.9	2.8e-20
QAB21452.1|2242017_2242725_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	2443443	2452068	2991907		Streptococcus_phage(66.67%)	11	NA	NA
QAB21622.1|2443443_2444439_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.2	5.9e-51
QAB21623.1|2444577_2445363_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
QAB21624.1|2445366_2446263_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	55.7	9.9e-82
QAB21625.1|2446361_2446709_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	33.3	2.4e-12
QAB21626.1|2446733_2447753_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.5	2.1e-32
QAB21627.1|2447769_2448099_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21628.1|2448095_2448761_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.7	1.4e-53
QAB21629.1|2449159_2449411_-	DUF2508 family protein	NA	NA	NA	NA	NA
QAB21630.1|2449425_2450025_-	recombination protein RecR	NA	NA	NA	NA	NA
QAB21631.1|2450040_2450349_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
QAB21632.1|2450370_2452068_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.3	1.3e-55
>prophage 7
CP035031	Lactobacillus plantarum strain YW11 chromosome, complete genome	2991907	2585380	2642061	2991907	bacteriocin,transposase,tRNA,protease	uncultured_Mediterranean_phage(18.18%)	53	NA	NA
QAB21748.1|2585380_2586652_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.7	4.5e-96
QAB21749.1|2587118_2588732_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.9	1.2e-143
QAB21750.1|2588904_2589513_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
QAB21751.1|2589557_2589998_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
QAB21752.1|2590360_2591293_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
QAB21753.1|2591307_2592660_+	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.9	5.2e-26
QAB21754.1|2592679_2593489_+	sugar-phosphatase	NA	NA	NA	NA	NA
QAB21755.1|2595152_2596139_-	lipoprotein	NA	NA	NA	NA	NA
QAB21756.1|2596221_2597244_-	YdcF family protein	NA	NA	NA	NA	NA
QAB21757.1|2597533_2598514_-	ribose-phosphate diphosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.3	4.9e-42
QAB21758.1|2598879_2599704_-	serine hydrolase	NA	NA	NA	NA	NA
QAB21759.1|2599939_2601322_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L140	Tupanvirus	33.2	5.7e-28
QAB21760.1|2601390_2602227_-	pur operon repressor	NA	NA	NA	NA	NA
QAB21761.1|2602719_2602983_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21762.1|2602997_2603540_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
QAB21763.1|2604548_2605324_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	52.3	7.8e-27
QAB21764.1|2605474_2606278_-	metal ABC transporter permease	NA	NA	NA	NA	NA
QAB21765.1|2606264_2606963_-	ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	27.8	1.2e-15
QAB21766.1|2607229_2608174_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAB21767.1|2608219_2608402_+	hypothetical protein	NA	NA	NA	NA	NA
QAB21768.1|2608483_2609350_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
QAB21769.1|2609482_2609734_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21770.1|2609838_2610729_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
QAB21771.1|2610725_2611289_-	ribonuclease M5	NA	NA	NA	NA	NA
QAB21772.1|2611275_2612052_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
QAB21773.1|2613037_2613772_+	transcriptional regulator	NA	NA	NA	NA	NA
QAB21774.1|2613960_2615145_-	Bcr/CflA family efflux MFS transporter	NA	NA	NA	NA	NA
QAB21775.1|2615377_2617429_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.8	2.7e-90
QAB21776.1|2617746_2618136_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QAB21777.1|2618732_2619575_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
QAB21778.1|2619574_2620279_-	NAD-dependent protein deacylase	NA	NA	NA	NA	NA
QAB21779.1|2620300_2621260_-	IpaB/EvcA family protein	NA	NA	NA	NA	NA
QAB21780.1|2621252_2622527_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
QAB21781.1|2622572_2623490_-	Ppx/GppA family phosphatase	NA	NA	NA	NA	NA
QAB21782.1|2623931_2624945_-|tRNA	tRNA-dihydrouridine synthase family protein	tRNA	NA	NA	NA	NA
QAB21783.1|2625175_2625541_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SAB3	Streptococcus_phage	44.1	1.8e-21
QAB21784.1|2625527_2625746_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
QAB21785.1|2625879_2626302_-	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
QAB21786.1|2626291_2626480_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21787.1|2626486_2627848_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAB21788.1|2627920_2628631_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QAB21789.1|2629038_2630055_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
QAB21790.1|2630494_2631271_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
QAB21791.1|2631529_2633839_+	ATP-dependent DNA helicase	NA	NA	NA	NA	NA
QAB21792.1|2634128_2634422_-	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	48.3	9.9e-07
QAB22162.1|2634453_2634726_-	hypothetical protein	NA	NA	NA	NA	NA
QAB21793.1|2634841_2635528_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAB21794.1|2635621_2636302_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAB21795.1|2636388_2637057_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAB21796.1|2637124_2637814_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAB21797.1|2637903_2639280_-	HlyD family secretion protein	NA	NA	NA	NA	NA
QAB21798.1|2639295_2641446_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.9	6.1e-45
QAB21799.1|2641902_2642061_+|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnF	bacteriocin	NA	NA	NA	NA
>prophage 1
CP035032	Lactobacillus plantarum strain YW11 plasmid plsm_YW11_pA, complete sequence	78746	546	61758	78746	holin,transposase,protease	Streptococcus_phage(20.0%)	60	NA	NA
QAB22168.1|546_723_-|transposase	transposase	transposase	NA	NA	NA	NA
QAB22169.1|752_1406_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22170.1|1461_1917_+	serine acetyltransferase	NA	NA	NA	NA	NA
QAB22171.1|2157_3087_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW47	unidentified_phage	34.1	1.5e-24
QAB22172.1|3742_5134_+	MATE family efflux transporter	NA	NA	NA	NA	NA
QAB22173.1|6523_7888_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	22.9	5.3e-10
QAB22174.1|8019_8406_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
QAB22175.1|9065_9320_-	hypothetical protein	NA	NA	NA	NA	NA
QAB22176.1|9441_9723_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22177.1|9905_12620_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
QAB22178.1|12746_12965_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22179.1|12965_14777_+	LtrC	NA	NA	NA	NA	NA
QAB22243.1|14843_15167_+	ribonuclease G	NA	NA	NA	NA	NA
QAB22180.1|15239_15638_-	hypothetical protein	NA	NA	NA	NA	NA
QAB22181.1|15630_15951_-	acetyl-CoA carboxylase	NA	NA	NA	NA	NA
QAB22182.1|15943_17245_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	40.0	7.6e-83
QAB22183.1|17358_17670_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22184.1|17923_18193_-	hypothetical protein	NA	NA	NA	NA	NA
QAB22185.1|18179_19082_-	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	32.1	4.1e-27
QAB22186.1|19923_21462_+	plasmid replication protein	NA	NA	NA	NA	NA
QAB22187.1|21771_24408_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22188.1|24679_25063_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22189.1|25034_25694_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22190.1|25709_27662_+	ATPase	NA	NA	NA	NA	NA
QAB22191.1|27664_27871_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22192.1|27871_29035_+	CHAP domain-containing protein	NA	A0A0A0RSI6	Bacillus_phage	34.8	1.7e-09
QAB22193.1|29047_29677_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22194.1|29949_30748_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QAB22195.1|31377_32340_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	49.2	1.4e-36
QAB22196.1|32336_32552_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22197.1|32553_32772_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22198.1|32768_33068_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22199.1|33064_33490_+	thioredoxin	NA	NA	NA	NA	NA
QAB22200.1|33508_34417_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22201.1|34702_34999_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22202.1|35000_35501_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22203.1|35518_35986_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22204.1|35957_38147_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22205.1|38148_38784_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAB22206.1|39064_39169_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QAB22207.1|39609_39747_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QAB22208.1|40278_42441_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	47.1	9.9e-104
QAB22209.1|42598_42865_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22210.1|42895_43534_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22211.1|43609_44575_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
QAB22212.1|44571_44766_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22213.1|44768_45401_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22214.1|45403_45670_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1S6UBG5	Serratia_phage	45.9	4.3e-09
QAB22215.1|45690_47187_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	33.5	1.5e-66
QAB22216.1|47253_47568_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22217.1|47663_49745_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22218.1|49754_50534_+	sortase	NA	NA	NA	NA	NA
QAB22219.1|50562_53502_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAB22220.1|53576_53873_+	hypothetical protein	NA	NA	NA	NA	NA
QAB22221.1|55042_55192_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
QAB22222.1|55135_55804_-	sugar transferase	NA	NA	NA	NA	NA
QAB22223.1|55851_56625_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
QAB22224.1|56611_57340_-	tyrosine-protein kinase family protein	NA	NA	NA	NA	NA
QAB22225.1|57350_58121_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
QAB22226.1|60582_61758_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	29.2	1.8e-27
