assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004063515.1_ASM406351v1	CP035054	Lactobacillus fermentum strain SRCM103285 chromosome, complete genome	1	320318-320615	1	PILER-CR	no	cas14j,WYL	cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	Unclear	CCAATGGTTGGGTCGCACTTCCAATAACGTGCTTCCCAACCGCAGGCCTAGTGGCTAAGTCCGA	64	1	1	320504-320560	CP035054.1_322820-322764	NA	2	2	TypeV	cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	NA,NA|153aa|down_0|CP035054.1_320693_321152_-	NA|105aa|up_9|CP035054.1_310382_310697_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|444aa|up_8|CP035054.1_310850_312182_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|390aa|up_7|CP035054.1_312761_313931_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|404aa|up_6|CP035054.1_314022_315234_-	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|250aa|up_5|CP035054.1_315246_315996_-	cd10787, LamB_YcsF_like, LamB/YcsF family of  lactam utilization protein	NA|463aa|up_4|CP035054.1_315982_317371_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|138aa|up_3|CP035054.1_317342_317756_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|339aa|up_2|CP035054.1_317758_318775_-	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B	NA|245aa|up_1|CP035054.1_318775_319510_-	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D	NA|141aa|up_0|CP035054.1_319786_320209_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|153aa|down_0|CP035054.1_320693_321152_-	NA	NA|507aa|down_1|CP035054.1_321148_322669_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|174aa|down_2|CP035054.1_322965_323487_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|199aa|down_3|CP035054.1_323505_324102_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|337aa|down_4|CP035054.1_324295_325306_+	PRK05425, PRK05425, asparagine synthetase AsnA; Provisional	NA|127aa|down_5|CP035054.1_325374_325755_+	cd04305, HAD_Neu5Ac-Pase_like, human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases	NA|372aa|down_6|CP035054.1_326186_327302_+	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|159aa|down_7|CP035054.1_327362_327839_+	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|78aa|down_8|CP035054.1_328229_328463_-	COG4892, COG4892, Predicted heme/steroid binding protein [General function prediction only]	WYL|243aa|down_9|CP035054.1_328565_329294_-	pfam13280, WYL, WYL domain
GCA_004063515.1_ASM406351v1	CP035054	Lactobacillus fermentum strain SRCM103285 chromosome, complete genome	2	1230758-1233831	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9,cas14j	cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	Type II-C,Type II-B,Type II-A	GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	36,36,36	5	5	1231125-1231154|1231654-1231683|1232314-1232343|1232512-1232541|1233700-1233729	CP035054.1_1102291-1102262|CP035054.1_1516415-1516444|CP035054.1_1520444-1520415|CP035054.1_1102291-1102262|CP035054.1_1523355-1523384	NA:NA:NA	46,46,45	46	TypeII-C,TypeII-B,TypeII-A,TypeV	cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	NA|114aa|up_8|CP035054.1_1224203_1224545_-,NA|109aa|up_5|CP035054.1_1226371_1226698_-,NA|189aa|up_3|CP035054.1_1228398_1228965_-,NA	NA|745aa|up_9|CP035054.1_1221953_1224188_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|114aa|up_8|CP035054.1_1224203_1224545_-	NA	NA|250aa|up_7|CP035054.1_1224604_1225354_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|321aa|up_6|CP035054.1_1225353_1226316_-	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|109aa|up_5|CP035054.1_1226371_1226698_-	NA	NA|318aa|up_4|CP035054.1_1227257_1228211_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|189aa|up_3|CP035054.1_1228398_1228965_-	NA	NA|77aa|up_2|CP035054.1_1229294_1229525_+	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|131aa|up_1|CP035054.1_1229649_1230042_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|153aa|up_0|CP035054.1_1230057_1230516_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	csn2|224aa|down_0|CP035054.1_1233859_1234531_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|CP035054.1_1234527_1234833_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|CP035054.1_1234810_1235716_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1382aa|down_3|CP035054.1_1235910_1240056_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|656aa|down_4|CP035054.1_1240311_1242279_-	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|255aa|down_5|CP035054.1_1242724_1243489_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|266aa|down_6|CP035054.1_1243511_1244309_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|214aa|down_7|CP035054.1_1244473_1245115_+	PRK00043, thiE, thiamine phosphate synthase	NA|271aa|down_8|CP035054.1_1245176_1245989_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|148aa|down_9|CP035054.1_1246003_1246447_-	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional
GCA_004063515.1_ASM406351v1	CP035054	Lactobacillus fermentum strain SRCM103285 chromosome, complete genome	3	1291442-1291562	2	CRISPRCasFinder	no		cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	Orphan	GATCCTCCAATTTACTTCCTTAATTATACTAAATCAGAGTCTCTA	45	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,WYL,cas3,DinG,csn2,cas2,cas1,cas9,DEDDh	NA|122aa|up_4|CP035054.1_1286589_1286955_+,NA|106aa|down_6|CP035054.1_1300203_1300521_-	NA|183aa|up_9|CP035054.1_1280699_1281248_-	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|387aa|up_8|CP035054.1_1281653_1282814_-	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|619aa|up_7|CP035054.1_1282925_1284782_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|196aa|up_6|CP035054.1_1284819_1285407_-	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|349aa|up_5|CP035054.1_1285417_1286464_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|122aa|up_4|CP035054.1_1286589_1286955_+	NA	NA|756aa|up_3|CP035054.1_1287740_1290008_+	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|40aa|up_2|CP035054.1_1290070_1290190_-	pfam13333, rve_2, Integrase core domain	NA|293aa|up_1|CP035054.1_1290246_1291125_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_0|CP035054.1_1291148_1291436_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|467aa|down_0|CP035054.1_1291701_1293102_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|443aa|down_1|CP035054.1_1293391_1294720_+	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|204aa|down_2|CP035054.1_1294894_1295506_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|118aa|down_3|CP035054.1_1295518_1295872_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|322aa|down_4|CP035054.1_1296262_1297228_-	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|391aa|down_5|CP035054.1_1298878_1300051_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|106aa|down_6|CP035054.1_1300203_1300521_-	NA	NA|215aa|down_7|CP035054.1_1300501_1301146_-	PRK03103, PRK03103, DNA polymerase IV; Reviewed	NA|329aa|down_8|CP035054.1_1301949_1302936_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|565aa|down_9|CP035054.1_1303093_1304788_+	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins
