The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	946746	1026094	2696269	tail,holin,protease,portal,head,integrase,terminase,tRNA,transposase,capsid	Enterococcus_phage(20.0%)	88	947659:947675	1008855:1008871
QAT22594.1|946746_947508_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QAT22595.1|947643_947991_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
947659:947675	attL	GAAGAATTAACAAAAGA	NA	NA	NA	NA
QAT22596.1|948122_949259_-|integrase	site-specific integrase	integrase	A0A1P8BMN3	Lactococcus_phage	36.8	1.7e-54
QAT22597.1|949382_949973_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
QAT22598.1|950110_950764_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22599.1|950813_951242_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
QAT22600.1|951246_951621_-	XRE family transcriptional regulator	NA	O03970	Lactobacillus_phage	38.7	3.2e-18
QAT22601.1|951924_952110_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	55.0	1.1e-11
QAT22602.1|952120_952369_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22603.1|952727_953333_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22604.1|953386_954085_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	2.1e-26
QAT22605.1|954263_954605_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22606.1|954597_955269_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
QAT22607.1|955274_955961_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	1.7e-89
QAT22608.1|955963_956713_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
QAT22609.1|956724_956994_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22610.1|957155_957461_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22611.1|957744_957960_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22612.1|957956_958256_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22613.1|958245_958434_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22614.1|958599_959067_+	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	29.8	3.8e-08
QAT22615.1|959374_959893_-	hypothetical protein	NA	A0A182BQC2	Lactococcus_phage	35.7	6.6e-22
QAT22616.1|960443_960668_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22617.1|960801_961656_+	hypothetical protein	NA	C9E2Q0	Enterococcus_phage	35.4	3.9e-27
QAT22618.1|961939_962134_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22619.1|962130_962358_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22620.1|962354_962642_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22621.1|963171_963486_+	HNH endonuclease	NA	A0A0K2CYS9	Paenibacillus_phage	41.7	2.6e-13
QAT22622.1|963469_963709_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22623.1|963983_964382_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22624.1|964433_964952_+|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	27.7	3.1e-11
QAT22625.1|964942_966733_+|terminase	terminase large subunit	terminase	A0A1B1P7R3	Bacillus_phage	56.3	2.7e-195
QAT22626.1|966732_967968_+|portal	phage portal protein	portal	A0A0K2CZB0	Paenibacillus_phage	57.1	5.6e-120
QAT22627.1|968002_968728_+|protease	Clp protease ClpP	protease	A0A0B5A796	Paenibacillus_phage	57.8	3.7e-71
QAT22628.1|968728_969865_+|capsid	phage major capsid protein	capsid	A0A0C5AEH1	Paenibacillus_phage	65.9	4.8e-134
QAT22629.1|969938_970301_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
QAT22630.1|970278_970641_+|head,tail	phage head-tail adapter protein	head,tail	A0A059T6F2	Listeria_phage	54.3	3.1e-26
QAT22631.1|970633_971038_+	hypothetical protein	NA	A0A2H4J7V9	uncultured_Caudovirales_phage	37.7	1.0e-17
QAT22632.1|971034_971445_+	hypothetical protein	NA	A0A059T681	Listeria_phage	47.2	1.1e-22
QAT22633.1|971505_972093_+|tail	phage tail protein	tail	A0A2P0ZLF5	Lactobacillus_phage	41.0	2.7e-35
QAT22634.1|972165_972633_+	Ig domain-containing protein	NA	C9E2K1	Enterococcus_phage	43.9	8.1e-19
QAT22635.1|972678_972987_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22636.1|973181_979946_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	38.4	2.0e-17
QAT22637.1|979949_980771_+|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	43.0	1.5e-55
QAT22638.1|980779_981823_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.3	1.9e-105
QAT24223.1|981822_982869_+	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	27.5	2.8e-19
QAT24224.1|982865_985163_+	DUF2479 domain-containing protein	NA	A0A060AI60	Enterococcus_phage	37.8	2.6e-62
QAT22639.1|985628_985757_+	XkdX family protein	NA	NA	NA	NA	NA
QAT22640.1|985817_986231_+|holin	holin	holin	A0A097BY69	Enterococcus_phage	65.4	2.3e-41
QAT22641.1|986230_987205_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A060AHF9	Enterococcus_phage	64.2	6.6e-124
QAT22642.1|987396_988878_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22643.1|989213_989411_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	76.9	6.6e-23
QAT22644.1|990424_990724_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22645.1|990729_990960_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22646.1|991460_991754_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
QAT22647.1|991841_992498_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAT22648.1|992746_993706_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
QAT22649.1|993911_995546_+	LPXTG-protein cell wall anchor protein	NA	NA	NA	NA	NA
QAT24225.1|995972_996233_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAT22650.1|996229_996430_+	cell wall anchor protein	NA	NA	NA	NA	NA
QAT24226.1|996718_997732_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAT22651.1|997728_999159_+	adhesin	NA	NA	NA	NA	NA
QAT22652.1|999647_1000784_+	class C sortase	NA	NA	NA	NA	NA
QAT24227.1|1000944_1001439_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22653.1|1002027_1002450_+	HTH domain-containing protein	NA	NA	NA	NA	NA
QAT22654.1|1002615_1003809_-	MFS transporter	NA	NA	NA	NA	NA
QAT24228.1|1004005_1004377_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22655.1|1004366_1005518_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
QAT22656.1|1005546_1006806_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAT22657.1|1006858_1007755_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QAT22658.1|1007765_1008635_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
QAT22659.1|1008644_1009307_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
1008855:1008871	attR	GAAGAATTAACAAAAGA	NA	NA	NA	NA
QAT22660.1|1009512_1011177_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
QAT22661.1|1011189_1011900_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
QAT22662.1|1012028_1012526_+	GAF domain-containing protein	NA	NA	NA	NA	NA
QAT22663.1|1012711_1012972_+	hypothetical protein	NA	NA	NA	NA	NA
QAT22664.1|1013383_1013920_-	VanZ family protein	NA	NA	NA	NA	NA
QAT22665.1|1015337_1016111_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QAT22666.1|1016254_1016605_+	SdpI family protein	NA	NA	NA	NA	NA
QAT22667.1|1016585_1017302_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
QAT22668.1|1017301_1018750_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.0e-19
QAT22669.1|1018818_1019778_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
QAT22670.1|1019888_1020398_-	hypothetical protein	NA	NA	NA	NA	NA
QAT22671.1|1020387_1021113_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
QAT22672.1|1021284_1023405_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	5.7e-221
QAT22673.1|1023633_1024812_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.7	2.1e-103
QAT22674.1|1024827_1025586_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.6	2.5e-25
QAT22675.1|1025608_1026094_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
>prophage 2
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	1568889	1577950	2696269		Synechococcus_phage(16.67%)	9	NA	NA
QAT23164.1|1568889_1569468_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
QAT24246.1|1569464_1570508_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.3e-61
QAT23165.1|1570539_1571979_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	3.1e-53
QAT23166.1|1571963_1574186_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	3.8e-151
QAT23167.1|1574186_1574858_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QAT23168.1|1574859_1575114_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QAT23169.1|1575113_1575842_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.2	5.1e-44
QAT23170.1|1576097_1576475_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23171.1|1576654_1577950_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
>prophage 3
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	1846138	1940182	2696269	tail,holin,head,protease,portal,integrase,terminase,transposase,tRNA,capsid	Enterococcus_phage(23.91%)	104	1863226:1863242	1925793:1925809
QAT23413.1|1846138_1847086_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.2	4.3e-51
QAT23414.1|1847124_1847670_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23415.1|1847741_1848629_-	hypothetical protein	NA	U3PJ04	Lactobacillus_phage	38.0	1.5e-18
QAT23416.1|1848822_1849623_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
QAT23417.1|1849684_1850422_-	AAA family ATPase	NA	A0A059NT77	Lactococcus_phage	51.2	1.4e-62
QAT23418.1|1850390_1851650_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	49.5	5.2e-105
QAT23419.1|1852267_1852666_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	39.3	4.4e-18
QAT23420.1|1852680_1853502_-	LicD family protein	NA	A0A1V0SAS8	Catovirus	36.5	6.6e-08
QAT23421.1|1853515_1854931_-	O-antigen ligase domain-containing protein	NA	NA	NA	NA	NA
QAT23422.1|1854930_1856061_-	glycosyltransferase	NA	NA	NA	NA	NA
QAT23423.1|1856060_1857593_-	transporter	NA	NA	NA	NA	NA
QAT23424.1|1857630_1858596_-	glycosyltransferase	NA	A0A0F7L2F7	uncultured_marine_virus	33.0	5.6e-06
QAT23425.1|1858588_1859656_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
QAT23426.1|1859663_1860365_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAT23427.1|1860361_1861234_-	LicD family protein	NA	NA	NA	NA	NA
QAT23428.1|1861413_1862454_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	31.5	3.9e-05
QAT23429.1|1862473_1863865_-	sugar transferase	NA	NA	NA	NA	NA
1863226:1863242	attL	GCTTCTTCTCTTTTTTT	NA	NA	NA	NA
QAT23430.1|1864157_1866296_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
QAT23431.1|1866334_1867921_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
QAT23432.1|1867910_1869131_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
QAT23433.1|1869142_1869949_-	ABC transporter permease	NA	NA	NA	NA	NA
QAT23434.1|1870157_1871438_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23435.1|1871481_1873515_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23436.1|1873549_1874401_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.6	2.9e-38
QAT23437.1|1874498_1875527_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
QAT23438.1|1875548_1876121_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	48.6	4.1e-41
QAT23439.1|1876134_1877001_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.5	2.2e-102
QAT23440.1|1877100_1877835_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
QAT23441.1|1877812_1878640_-	glycosyltransferase	NA	NA	NA	NA	NA
QAT23442.1|1878639_1879440_-	glycosyltransferase	NA	NA	NA	NA	NA
QAT23443.1|1879432_1880572_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
QAT23444.1|1880647_1881571_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
QAT23445.1|1881602_1882367_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
QAT23446.1|1882524_1882965_+	flavodoxin	NA	NA	NA	NA	NA
QAT23447.1|1883140_1883710_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QAT23448.1|1883965_1885198_+	aminopeptidase	NA	NA	NA	NA	NA
QAT24254.1|1885209_1885404_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23449.1|1885345_1885894_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23450.1|1886729_1887032_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23451.1|1888041_1888239_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
QAT23452.1|1888659_1889352_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23453.1|1889479_1890490_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.2	3.1e-60
QAT23454.1|1890500_1890698_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
QAT23455.1|1890713_1890956_-|holin	holin	holin	D2J075	Enterococcus_phage	68.4	2.1e-23
QAT23456.1|1891019_1893896_-	hypothetical protein	NA	A0A0S2MYI4	Enterococcus_phage	52.9	1.2e-96
QAT23457.1|1893919_1896211_-	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	29.8	1.6e-88
QAT23458.1|1896220_1896958_-|tail	phage tail protein	tail	NA	NA	NA	NA
QAT23459.1|1897008_1900440_-|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	41.3	3.3e-77
QAT23460.1|1900456_1900639_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23461.1|1900641_1901004_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23462.1|1901025_1901631_-|tail	phage tail protein	tail	Q8W5Z9	Listeria_phage	41.2	6.7e-34
QAT23463.1|1901642_1902047_-	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
QAT23464.1|1902039_1902441_-	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	34.1	3.0e-14
QAT23465.1|1902430_1902784_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
QAT23466.1|1902773_1903085_-	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	43.5	1.1e-11
QAT23467.1|1903081_1903957_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	1.9e-130
QAT23468.1|1903966_1905127_-|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.4	9.4e-101
QAT23469.1|1905126_1905813_-|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.8e-30
QAT23470.1|1905775_1906954_-|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	3.2e-80
QAT23471.1|1906973_1908668_-|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.8	1.8e-148
QAT23472.1|1908645_1908960_-|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
QAT23473.1|1909062_1909344_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23474.1|1909348_1909693_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	58.1	1.0e-26
QAT23475.1|1909942_1910497_-	hypothetical protein	NA	A0A1Q1PW40	Staphylococcus_phage	34.2	5.8e-16
QAT23476.1|1910516_1911461_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24255.1|1911855_1912272_-	autolysin	NA	C9E2P5	Enterococcus_phage	67.4	1.4e-46
QAT23477.1|1912400_1912595_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23478.1|1912591_1912948_-	hypothetical protein	NA	A8E2C9	Enterococcus_phage	35.6	2.1e-11
QAT23479.1|1913098_1913407_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23480.1|1913403_1913601_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23481.1|1913626_1913845_-	phosphocarrier protein HPr domain protein	NA	NA	NA	NA	NA
QAT23482.1|1913841_1914153_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	57.0	3.5e-26
QAT23483.1|1914152_1914458_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23484.1|1914454_1914616_-	antitoxin	NA	NA	NA	NA	NA
QAT23485.1|1914612_1914915_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23486.1|1915077_1915347_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23487.1|1915358_1916108_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
QAT23488.1|1916110_1916797_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
QAT23489.1|1916802_1917474_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	5.5e-29
QAT23490.1|1917466_1917808_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23491.1|1917986_1918712_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.5	3.3e-27
QAT23492.1|1918764_1919241_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23493.1|1919432_1919753_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
QAT23494.1|1919765_1919951_-	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	55.0	1.1e-11
QAT23495.1|1920253_1920628_+	XRE family transcriptional regulator	NA	O03970	Lactobacillus_phage	38.7	3.2e-18
QAT23496.1|1920632_1921061_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
QAT23497.1|1921145_1921607_+	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	33.3	7.7e-06
QAT23498.1|1921640_1922276_+	DUF3221 domain-containing protein	NA	NA	NA	NA	NA
QAT23499.1|1922385_1923525_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.0e-95
QAT23500.1|1924055_1925237_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAT23501.1|1925360_1925774_-	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
QAT23502.1|1925773_1925956_-	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
1925793:1925809	attR	GCTTCTTCTCTTTTTTT	NA	NA	NA	NA
QAT23503.1|1925987_1926209_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23504.1|1926278_1927739_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAT23505.1|1927846_1928167_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
QAT23506.1|1928195_1928513_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
QAT23507.1|1928665_1931368_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
QAT23508.1|1931430_1932708_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.5	2.2e-34
QAT23509.1|1932707_1933721_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
QAT23510.1|1933736_1934465_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
QAT24256.1|1934641_1934971_+	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
QAT23511.1|1935146_1935794_+	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
QAT23512.1|1935808_1937335_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
QAT23513.1|1937383_1940182_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	7.4e-75
>prophage 4
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	1975335	2014286	2696269	tail,holin,head,portal,integrase,terminase,capsid	Enterococcus_phage(53.85%)	57	1975123:1975158	2014378:2014413
1975123:1975158	attL	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
QAT23548.1|1975335_1976130_+	DUF4428 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	32.9	3.3e-12
QAT23549.1|1976223_1976526_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23550.1|1977365_1977545_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23551.1|1977557_1978115_+	GNAT family N-acetyltransferase	NA	A0A0B5CYP1	Listeria_phage	41.5	9.3e-30
QAT23552.1|1978158_1979184_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	55.2	4.5e-62
QAT23553.1|1979194_1979392_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	3.0e-23
QAT23554.1|1979407_1979650_-|holin	holin	holin	D2J075	Enterococcus_phage	62.0	2.0e-21
QAT23555.1|1979684_1979822_-	XkdX family protein	NA	NA	NA	NA	NA
QAT23556.1|1979823_1980270_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23557.1|1980270_1982358_-	DUF2479 domain-containing protein	NA	A0A0M4RT83	Enterococcus_phage	41.3	1.4e-62
QAT23558.1|1982357_1983140_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23559.1|1983156_1984914_-	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	42.3	2.5e-36
QAT23560.1|1984888_1987720_-	peptidase M23	NA	A0A1P8BMB8	Lactococcus_phage	60.3	0.0e+00
QAT24258.1|1987716_1988484_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.1	1.5e-59
QAT23561.1|1988516_1991231_-	tape measure protein	NA	A0A1P8BMG6	Lactococcus_phage	27.0	4.1e-06
QAT23562.1|1991247_1991547_-	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	58.3	2.9e-22
QAT23563.1|1991600_1991951_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	57.8	1.5e-30
QAT23564.1|1991994_1992507_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	65.5	2.0e-55
QAT23565.1|1992507_1992903_-|capsid	phage capsid protein	capsid	Q77K20	Lactococcus_phage	59.8	1.3e-38
QAT23566.1|1992903_1993287_-	hypothetical protein	NA	A0A097BY98	Enterococcus_phage	73.4	3.1e-45
QAT23567.1|1993279_1993597_-	hypothetical protein	NA	C9E2J7	Enterococcus_phage	66.3	2.7e-34
QAT23568.1|1993593_1993923_-	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	75.5	6.4e-39
QAT23569.1|1993934_1994198_-	hypothetical protein	NA	D2J062	Enterococcus_phage	75.0	6.5e-10
QAT23570.1|1994215_1995139_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.5	1.1e-139
QAT23571.1|1995151_1995754_-	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	51.5	3.2e-36
QAT23572.1|1995880_1996807_-|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	58.6	3.4e-93
QAT23573.1|1996811_1998311_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.7	6.2e-222
QAT23574.1|1998323_1999568_-|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	81.2	1.5e-200
QAT23575.1|1999554_2000088_-|terminase	terminase small subunit	terminase	A0A059NT97	Lactococcus_phage	40.7	9.2e-19
QAT23576.1|2000114_2000339_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24259.1|2001172_2001589_-	autolysin	NA	C9E2P5	Enterococcus_phage	68.1	6.2e-47
QAT23577.1|2001664_2001961_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23578.1|2001960_2002167_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23579.1|2002163_2002361_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23580.1|2002851_2003049_-	DUF1642 domain-containing protein	NA	NA	NA	NA	NA
QAT23581.1|2003050_2003518_-	DUF1642 domain-containing protein	NA	A0A0C5JZC6	Enterococcus_phage	68.4	6.2e-27
QAT24260.1|2003514_2003583_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24261.1|2003667_2004420_-	site-specific DNA-methyltransferase	NA	A0A097QQ03	Enterococcus_phage	82.2	4.1e-121
QAT23582.1|2004461_2004644_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23583.1|2004640_2004958_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	36.4	3.5e-10
QAT23584.1|2004957_2005248_-	hypothetical protein	NA	D2IZR3	Enterococcus_phage	44.4	4.8e-14
QAT23585.1|2005241_2005547_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23586.1|2005549_2005711_-	antitoxin	NA	NA	NA	NA	NA
QAT23587.1|2005725_2006085_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.1e-18
QAT23588.1|2006081_2006933_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	6.2e-25
QAT23589.1|2006949_2007780_-	replication protein	NA	C9E2N2	Enterococcus_phage	45.2	2.6e-52
QAT23590.1|2007782_2008469_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.5	1.3e-89
QAT23591.1|2008474_2009221_-	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	47.5	1.7e-42
QAT23592.1|2009213_2009555_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23593.1|2009877_2010066_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	56.9	3.1e-06
QAT23594.1|2010086_2010371_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23595.1|2010361_2010568_-	XRE family transcriptional regulator	NA	D2IZW2	Enterococcus_phage	54.5	4.3e-09
QAT23596.1|2010564_2011338_-	phage antirepressor	NA	B2ZYU5	Staphylococcus_phage	52.4	3.8e-66
QAT23597.1|2011982_2012330_+	XRE family transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	62.5	9.2e-28
QAT24262.1|2012365_2012761_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
QAT23598.1|2012814_2013126_+	hypothetical protein	NA	NA	NA	NA	NA
QAT23599.1|2013137_2014286_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	40.1	3.0e-67
2014378:2014413	attR	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
>prophage 5
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	2034238	2042832	2696269		Streptococcus_phage(66.67%)	9	NA	NA
QAT23620.1|2034238_2036428_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.4	2.2e-284
QAT23621.1|2036864_2037467_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
QAT23622.1|2037520_2038642_-	DNA polymerase IV	NA	NA	NA	NA	NA
QAT23623.1|2038750_2039623_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	3.6e-89
QAT23624.1|2039691_2040039_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
QAT23625.1|2040031_2040856_-	signal peptidase	NA	NA	NA	NA	NA
QAT23626.1|2040891_2041830_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	2.8e-34
QAT23627.1|2041843_2042173_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23628.1|2042187_2042832_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 6
CP035220	Enterococcus faecium strain SRCM103470 chromosome, complete genome	2696269	2230156	2313563	2696269	tail,holin,protease,head,portal,integrase,terminase,transposase,capsid	Enterococcus_phage(33.33%)	92	2273120:2273179	2310435:2310495
QAT23793.1|2230156_2231116_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
QAT23794.1|2231310_2231745_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23795.1|2231854_2233714_-	LTA synthase family protein	NA	NA	NA	NA	NA
QAT23796.1|2233714_2233837_+	3-phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
QAT23797.1|2233831_2234992_-	hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	35.8	7.3e-61
QAT23798.1|2235299_2236724_-	L-arabinose isomerase	NA	NA	NA	NA	NA
QAT23799.1|2236739_2237438_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
QAT23800.1|2237394_2239056_-	ATPase	NA	NA	NA	NA	NA
QAT23801.1|2239274_2240675_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
QAT23802.1|2240606_2240786_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23803.1|2240832_2241912_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QAT23804.1|2242029_2243268_-	MFS transporter	NA	NA	NA	NA	NA
QAT23805.1|2243285_2244287_-	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
QAT23806.1|2244488_2245379_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAT23807.1|2245453_2246278_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	56.0	1.4e-77
QAT23808.1|2246289_2247762_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.4	7.0e-109
QAT23809.1|2248190_2249219_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
QAT23810.1|2249325_2249949_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23811.1|2249972_2250545_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23812.1|2250534_2250831_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23813.1|2250904_2253700_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23814.1|2254142_2255684_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24268.1|2255657_2255903_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23815.1|2255910_2256267_-	DUF1827 family protein	NA	NA	NA	NA	NA
QAT23816.1|2256489_2257242_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
QAT23817.1|2257357_2258281_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QAT23818.1|2258295_2258568_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23819.1|2258650_2260057_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAT23820.1|2260388_2262014_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
QAT23821.1|2262065_2262350_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
QAT23822.1|2262574_2263237_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAT23823.1|2263313_2264612_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAT23824.1|2264780_2265410_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QAT23825.1|2265510_2266320_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
QAT23826.1|2266374_2267244_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23827.1|2267244_2268561_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23828.1|2268557_2270393_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
QAT23829.1|2270397_2271102_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
QAT23830.1|2271291_2272152_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.5	6.0e-12
QAT23831.1|2272138_2272708_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
2273120:2273179	attL	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCAC	NA	NA	NA	NA
QAT23832.1|2273363_2274383_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	68.6	4.1e-60
QAT23833.1|2274393_2274591_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	5.9e-24
QAT23834.1|2274613_2274907_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23835.1|2274943_2275081_-	XkdX family protein	NA	NA	NA	NA	NA
QAT23836.1|2275082_2275529_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23837.1|2275547_2277827_-	DUF2479 domain-containing protein	NA	A0A060AI60	Enterococcus_phage	40.7	3.5e-67
QAT23838.1|2277826_2278873_-	hypothetical protein	NA	A0A059T661	Listeria_phage	31.0	2.2e-16
QAT23839.1|2278872_2279892_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.3	6.5e-106
QAT23840.1|2279900_2280731_-|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	40.8	7.5e-52
QAT23841.1|2280741_2285298_-	tape measure protein	NA	A0A060ANI0	Enterococcus_phage	50.3	1.9e-237
QAT23842.1|2285297_2285489_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23843.1|2285512_2285824_-	hypothetical protein	NA	A0A0M4R2F4	Enterococcus_phage	46.7	2.3e-14
QAT23844.1|2285950_2286511_-|tail	phage tail protein	tail	A0A0S2MY53	Enterococcus_phage	46.4	4.0e-41
QAT23845.1|2286526_2286898_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	44.4	2.1e-22
QAT23846.1|2286894_2287290_-	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	41.7	5.8e-18
QAT23847.1|2287286_2287622_-|head,tail	head-tail adaptor protein	head,tail	C0LZZ3	Enterococcus_phage	42.3	1.1e-17
QAT23848.1|2287599_2287884_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0M4S687	Enterococcus_phage	47.9	2.3e-16
QAT23849.1|2287895_2288105_-	hypothetical protein	NA	A5GYM0	Lactococcus_phage	61.2	8.6e-13
QAT23850.1|2288149_2289337_-|capsid	phage major capsid protein	capsid	A0A0S2SXJ6	Bacillus_phage	55.0	1.2e-79
QAT24269.1|2289376_2289922_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0M4R4P2	Enterococcus_phage	59.8	3.7e-55
QAT23851.1|2289869_2291054_-|portal	phage portal protein	portal	V5US36	Enterococcus_phage	43.2	2.5e-77
QAT23852.1|2291227_2292952_-|terminase	terminase large subunit	terminase	D7PQ39	Enterococcus_phage	53.0	2.7e-168
QAT23853.1|2292944_2293424_-|terminase	phage terminase small subunit P27 family	terminase	A0A0M3UL59	Enterococcus_phage	58.4	7.7e-41
QAT23854.1|2293589_2293964_-	HNH endonuclease	NA	A0A249XUN4	Enterococcus_phage	55.2	1.7e-32
QAT23855.1|2293965_2294535_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23856.1|2294599_2294827_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24270.1|2295381_2295795_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.1e-56
QAT23857.1|2295870_2296167_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23858.1|2296166_2296361_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23859.1|2296357_2296681_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23860.1|2296677_2296956_-	hypothetical protein	NA	R4JMM4	Bacillus_phage	54.4	1.8e-18
QAT24271.1|2296952_2297528_-	DUF1642 domain-containing protein	NA	A0A059T7S4	Listeria_phage	43.4	4.9e-18
QAT23861.1|2297584_2298025_-	hypothetical protein	NA	A0A1S5SFT9	Streptococcus_phage	34.9	4.6e-08
QAT23862.1|2297987_2298455_-	HNH endonuclease	NA	A0A1S5SA27	Streptococcus_phage	67.8	2.4e-55
QAT23863.1|2298451_2298769_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	36.4	7.9e-10
QAT23864.1|2298768_2299074_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23865.1|2299070_2299232_-	antitoxin	NA	NA	NA	NA	NA
QAT23866.1|2299228_2299546_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	61.0	7.6e-29
QAT23867.1|2299861_2302198_-	DNA primase	NA	Q9T0Y1	Lactobacillus_phage	51.0	8.5e-226
QAT23868.1|2302197_2302704_-	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	45.2	1.1e-34
QAT23869.1|2302721_2304245_-	DEAD/DEAH box helicase	NA	Q9T0Y3	Lactobacillus_phage	49.3	2.3e-107
QAT23870.1|2304216_2304957_-	DNA-binding protein	NA	A0A1X9I651	Streptococcus_phage	54.4	9.0e-65
QAT23871.1|2304977_2305457_-	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	49.7	1.8e-34
QAT23872.1|2305389_2305707_-	hypothetical protein	NA	NA	NA	NA	NA
QAT23873.1|2305918_2306170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAT23874.1|2306340_2307081_-	phage antirepressor protein	NA	A0A1P8BLA9	Lactococcus_phage	50.2	1.4e-60
QAT23875.1|2307077_2307341_-	XRE family transcriptional regulator	NA	E8ZDN3	Streptococcus_phage	53.5	9.8e-14
QAT23876.1|2307497_2308151_+	helix-turn-helix domain-containing protein	NA	E9LUS8	Lactobacillus_phage	43.7	1.4e-40
QAT23877.1|2308249_2308981_+	SHOCT domain-containing protein	NA	X5JB37	Clostridium_phage	38.1	5.3e-17
QAT23878.1|2309091_2310303_+|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	30.3	7.2e-35
QAT23879.1|2310649_2312377_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
2310435:2310495	attR	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCACG	NA	NA	NA	NA
QAT23880.1|2312369_2313563_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
>prophage 1
CP035221	Enterococcus faecium strain SRCM103470 plasmid unnamed1	239262	5290	62710	239262	integrase,transposase	Streptococcus_phage(27.78%)	45	NA	NA
QAT24283.1|5290_6250_+|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	1.8e-36
QAT24284.1|6523_6880_-	topoisomerase	NA	NA	NA	NA	NA
QAT24489.1|7779_7965_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24285.1|8081_9507_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	3.9e-48
QAT24286.1|9812_10775_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	3.0e-20
QAT24287.1|10776_12216_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	24.8	1.8e-16
QAT24288.1|12400_14347_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
QAT24289.1|14610_15483_+	ROK family protein	NA	NA	NA	NA	NA
QAT24290.1|17803_18973_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
QAT24291.1|19071_20355_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	27.5	4.6e-08
QAT24292.1|20355_21045_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	2.9e-126
QAT24293.1|21168_22290_-	class C sortase	NA	NA	NA	NA	NA
QAT24294.1|22286_23483_-	class C sortase	NA	NA	NA	NA	NA
QAT24295.1|23569_25057_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAT24296.1|25121_25853_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAT24297.1|25854_29514_-	VWA domain-containing protein	NA	NA	NA	NA	NA
QAT24298.1|30296_30977_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	9.4e-109
QAT24299.1|31037_31589_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
QAT24300.1|32288_33587_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24301.1|33952_34861_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
QAT24302.1|35323_36616_-	guanosine 5'-monophosphate oxidoreductase	NA	NA	NA	NA	NA
QAT24490.1|36590_37823_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	36.1	7.3e-19
QAT24303.1|37993_38353_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24304.1|38446_39133_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
QAT24305.1|39828_40893_-	2,3-butanediol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.7	7.2e-15
QAT24306.1|41179_42385_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
QAT24307.1|42402_43434_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
QAT24308.1|43458_44427_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
QAT24309.1|44443_45796_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.2	8.0e-43
QAT24310.1|46148_47939_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
QAT24311.1|48062_49364_-	DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	99.0	1.9e-105
QAT24312.1|49363_49756_-	recombinase family protein	NA	NA	NA	NA	NA
QAT24313.1|50207_51347_-	MFS transporter	NA	NA	NA	NA	NA
QAT24314.1|51927_52518_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	33.1	8.3e-21
QAT24315.1|52523_53357_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
QAT24316.1|53537_54515_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
QAT24317.1|54543_54810_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	36.0	6.2e-08
QAT24318.1|55227_55587_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	40.4	4.4e-17
QAT24319.1|55752_55950_+	DNA-binding protein	NA	NA	NA	NA	NA
QAT24320.1|55939_56554_+	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
QAT24321.1|56736_57654_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.2	4.6e-42
QAT24322.1|57646_58396_+	ABC transporter permease	NA	NA	NA	NA	NA
QAT24323.1|58395_59226_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
QAT24324.1|59651_60074_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
QAT24325.1|61553_62710_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.8e-75
>prophage 2
CP035221	Enterococcus faecium strain SRCM103470 plasmid unnamed1	239262	79289	134505	239262	protease,transposase	Streptococcus_phage(27.27%)	55	NA	NA
QAT24341.1|79289_80198_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
QAT24342.1|80572_81532_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.6e-37
QAT24343.1|82853_83171_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QAT24344.1|83171_83426_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
QAT24345.1|83685_83826_-	addiction module toxin RelE	NA	NA	NA	NA	NA
QAT24346.1|85714_86755_+	replication protein RepA	NA	NA	NA	NA	NA
QAT24347.1|87578_87911_+	conjugal transfer protein TraE	NA	NA	NA	NA	NA
QAT24348.1|88529_88871_+	hypothetical protein	NA	F0PIH7	Enterococcus_phage	63.4	3.1e-36
QAT24349.1|88889_89180_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24350.1|89371_89605_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24351.1|89671_89911_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24352.1|89996_90668_+	class A sortase	NA	NA	NA	NA	NA
QAT24353.1|90720_92349_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAT24354.1|92857_93259_+|transposase	IS200/IS605 family transposase	transposase	Q332K6	Clostridium_botulinum_C_phage	62.4	6.9e-43
QAT24355.1|93282_94401_+|transposase	transposase	transposase	A0A286QMQ9	Streptococcus_phage	50.8	1.1e-95
QAT24356.1|94844_95600_+	class C sortase	NA	NA	NA	NA	NA
QAT24357.1|95596_96424_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24491.1|96433_96682_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24358.1|96712_98824_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAT24359.1|98859_100911_-|protease	serine protease	protease	NA	NA	NA	NA
QAT24360.1|101030_101240_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24361.1|101427_101886_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24362.1|101882_102125_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24363.1|102142_102445_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24364.1|102514_104569_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24365.1|104568_107178_+	type IV secretory protein	NA	NA	NA	NA	NA
QAT24366.1|107174_109565_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24367.1|109616_109949_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24368.1|109949_110543_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24369.1|110705_112400_+	ATPase	NA	NA	NA	NA	NA
QAT24370.1|112667_112901_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24371.1|113087_114965_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.4	1.8e-29
QAT24372.1|115472_116678_+	peptidase M23	NA	Q6SEC2	Lactobacillus_prophage	41.8	2.5e-32
QAT24373.1|116693_117338_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24374.1|117348_118155_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24375.1|118177_118408_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24376.1|118922_119219_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24377.1|119220_119643_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24378.1|119661_121254_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24379.1|121265_121601_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24380.1|121746_121941_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24381.1|121953_124326_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.4	9.8e-12
QAT24382.1|124386_125847_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24492.1|125857_128062_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	51.0	8.0e-117
QAT24383.1|128307_128904_+	transcriptional regulator	NA	NA	NA	NA	NA
QAT24384.1|128916_129816_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
QAT24385.1|129818_130304_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	59.3	5.4e-42
QAT24493.1|130669_130930_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	50.0	4.5e-11
QAT24386.1|131374_131581_+	DNA helicase UvrA	NA	NA	NA	NA	NA
QAT24387.1|131580_131832_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24388.1|131847_132285_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24389.1|132504_132705_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24390.1|132965_133361_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24391.1|133410_133617_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24392.1|133818_134505_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.3	3.6e-124
>prophage 3
CP035221	Enterococcus faecium strain SRCM103470 plasmid unnamed1	239262	141806	193449	239262	integrase,holin,protease,transposase,bacteriocin	Bacillus_phage(30.0%)	54	157275:157300	192208:192233
QAT24400.1|141806_142493_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	8.5e-126
QAT24401.1|142698_142830_-|bacteriocin	enterocin L50 family leaderless bacteriocin	bacteriocin	NA	NA	NA	NA
QAT24402.1|142849_142984_-|bacteriocin	enterocin L50 family leaderless bacteriocin	bacteriocin	NA	NA	NA	NA
QAT24403.1|143491_143761_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24404.1|143761_144034_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24405.1|144023_144455_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24406.1|144451_145834_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24407.1|145835_146333_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24408.1|146325_147543_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QAT24409.1|147539_148223_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.7	8.7e-38
QAT24410.1|148219_149419_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
QAT24411.1|149822_150167_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24412.1|150247_150751_-	peptidase	NA	A0A1B2APZ3	Phage_Wrath	55.0	3.4e-39
QAT24413.1|150713_150950_+	XRE family transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	52.1	2.5e-13
QAT24414.1|151186_153301_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	38.7	6.9e-118
QAT24415.1|153682_153913_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24416.1|153998_155124_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	53.7	1.9e-74
QAT24417.1|155141_155738_+	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	32.1	3.3e-09
QAT24418.1|155734_157165_-	hypothetical protein	NA	NA	NA	NA	NA
157275:157300	attL	GGGAGCGTCAATAATTTTGTGTAAAT	NA	NA	NA	NA
QAT24419.1|157326_158511_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.5	2.9e-28
QAT24420.1|158595_158814_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24421.1|159980_160286_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24422.1|160403_160664_-	hypothetical protein	NA	NA	NA	NA	NA
QAT24423.1|160800_161214_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
QAT24494.1|162792_163335_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	42.0	2.2e-23
QAT24424.1|163394_163691_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
QAT24425.1|163749_164919_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
QAT24426.1|165509_165932_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
QAT24427.1|166015_166669_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
QAT24428.1|166665_167430_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
QAT24429.1|167504_167618_+	resolvase	NA	NA	NA	NA	NA
QAT24430.1|167831_168074_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
QAT24431.1|169402_170818_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24432.1|171158_171293_+	DNA topoisomerase	NA	NA	NA	NA	NA
QAT24433.1|171532_172126_+	abortive infection protein	NA	NA	NA	NA	NA
QAT24434.1|172138_173038_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
QAT24435.1|173040_173526_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	60.5	1.4e-42
QAT24436.1|173602_173830_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QAT24437.1|173986_175177_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	27.1	6.2e-23
QAT24495.1|175245_175509_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	47.4	6.5e-10
QAT24438.1|176160_176412_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24439.1|176427_176865_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24440.1|177728_177929_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24441.1|178144_178825_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	3.2e-109
QAT24442.1|179200_184441_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAT24443.1|184713_185307_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	33.0	7.1e-20
QAT24444.1|185709_185967_-	hypothetical protein	NA	A0A1P8CWQ3	Bacillus_phage	52.9	6.6e-07
QAT24445.1|186032_187124_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
QAT24446.1|187232_187493_+|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	40.5	1.4e-09
QAT24447.1|187489_187981_+|transposase	transposase	transposase	NA	NA	NA	NA
QAT24448.1|188225_189461_+	mobilization protein	NA	NA	NA	NA	NA
QAT24449.1|190610_191297_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.8	2.2e-126
QAT24496.1|191810_192176_+	hypothetical protein	NA	NA	NA	NA	NA
QAT24450.1|192258_193449_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	27.1	2.8e-23
192208:192233	attR	GGGAGCGTCAATAATTTTGTGTAAAT	NA	NA	NA	NA
