assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004103735.1_ASM410373v1	CP035281	Aminipila sp. JN-39 chromosome, complete genome	1	543999-544102	1	CRISPRCasFinder	no		WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TGTGGTATAATGATTCCAAAGATTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	NA|86aa|up_5|CP035281.1_536092_536350_-,NA|388aa|down_7|CP035281.1_550617_551781_-	NA|165aa|up_9|CP035281.1_533751_534246_+	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|289aa|up_8|CP035281.1_534333_535200_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|85aa|up_7|CP035281.1_535190_535445_+	pfam12652, CotJB, CotJB protein	NA|141aa|up_6|CP035281.1_535447_535870_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|86aa|up_5|CP035281.1_536092_536350_-	NA	NA|309aa|up_4|CP035281.1_538030_538957_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|297aa|up_3|CP035281.1_539205_540096_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|518aa|up_2|CP035281.1_540295_541849_+	cd03770, SR_TndX_transposase, Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases	NA|286aa|up_1|CP035281.1_542270_543128_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|252aa|up_0|CP035281.1_543143_543899_+	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|383aa|down_0|CP035281.1_544171_545320_+	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	NA|113aa|down_1|CP035281.1_545620_545959_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|355aa|down_2|CP035281.1_546075_547140_+	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|151aa|down_3|CP035281.1_547551_548004_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|69aa|down_4|CP035281.1_548015_548222_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|518aa|down_5|CP035281.1_548287_549841_+	pfam13777, DUF4173, Domain of unknown function (DUF4173)	NA|194aa|down_6|CP035281.1_549918_550500_+	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|388aa|down_7|CP035281.1_550617_551781_-	NA	NA|140aa|down_8|CP035281.1_552326_552746_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|505aa|down_9|CP035281.1_552945_554460_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
GCA_004103735.1_ASM410373v1	CP035281	Aminipila sp. JN-39 chromosome, complete genome	2	565624-565775	2	CRISPRCasFinder	no		WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTTTATTACGTAGGAAATATCGCAAGCGATATTGACGGAGTATCATAAA	49	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	NA|157aa|up_4|CP035281.1_559961_560432_+,NA	NA|405aa|up_9|CP035281.1_555424_556639_-	TIGR00900, multidrug_transporter, H+ Antiporter protein	NA|217aa|up_8|CP035281.1_556714_557365_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|82aa|up_7|CP035281.1_557863_558109_+	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|105aa|up_6|CP035281.1_558111_558426_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|257aa|up_5|CP035281.1_558874_559645_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|157aa|up_4|CP035281.1_559961_560432_+	NA	NA|680aa|up_3|CP035281.1_560433_562473_+	cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases	NA|122aa|up_2|CP035281.1_562563_562929_+	pfam13788, DUF4180, Domain of unknown function (DUF4180)	NA|302aa|up_1|CP035281.1_563156_564062_+	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|380aa|up_0|CP035281.1_564204_565344_-	pfam03022, MRJP, Major royal jelly protein	NA|783aa|down_0|CP035281.1_565853_568202_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|677aa|down_1|CP035281.1_568218_570249_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|204aa|down_2|CP035281.1_570262_570874_+	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|300aa|down_3|CP035281.1_571046_571946_-	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|258aa|down_4|CP035281.1_572109_572883_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|814aa|down_5|CP035281.1_572887_575329_+	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed	NA|256aa|down_6|CP035281.1_575467_576235_+	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|687aa|down_7|CP035281.1_576536_578597_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|591aa|down_8|CP035281.1_578856_580629_+	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit	NA|191aa|down_9|CP035281.1_580625_581198_+	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed
GCA_004103735.1_ASM410373v1	CP035281	Aminipila sp. JN-39 chromosome, complete genome	3	2048267-2053735	1,3,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACACTCCCCTTGCGAGGAGCGAC,ATTTCAATCCACACTCCCCTTGCGAGGAGCGAC,ATTTCAATCCACACTCCCCTTGCGAGGAGCGAC,ATTTCAATCCACACTCCCCTTGCGAGGAGCGAC	33,33,33,33	0	0	NA	NA	NA:NA:NA:NA	75,81,81,75	81	TypeI-U?,TypeI-U,TypeI-C	WYL,csa3,cas3,PD-DExK,RT,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|69aa|down_8|CP035281.1_2062480_2062687_-	NA|549aa|up_9|CP035281.1_2034378_2036025_+	cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins	NA|125aa|up_8|CP035281.1_2036006_2036381_-	PRK14205, PRK14205, fluoride efflux transporter CrcB	NA|131aa|up_7|CP035281.1_2036373_2036766_-	PRK14231, PRK14231, fluoride efflux transporter CrcB	NA|188aa|up_6|CP035281.1_2036785_2037349_-	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|296aa|up_5|CP035281.1_2037675_2038563_-	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|618aa|up_4|CP035281.1_2038801_2040655_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|504aa|up_3|CP035281.1_2040726_2042238_-	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	NA|312aa|up_2|CP035281.1_2042297_2043233_-	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein	NA|790aa|up_1|CP035281.1_2043245_2045615_-	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes	NA|420aa|up_0|CP035281.1_2045817_2047077_-	pfam01566, Nramp, Natural resistance-associated macrophage protein	cas2|97aa|down_0|CP035281.1_2053901_2054192_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|343aa|down_1|CP035281.1_2054204_2055233_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|down_2|CP035281.1_2055229_2055889_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|278aa|down_3|CP035281.1_2055885_2056719_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|652aa|down_4|CP035281.1_2056699_2058655_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|248aa|down_5|CP035281.1_2058651_2059395_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|781aa|down_6|CP035281.1_2059432_2061775_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|83aa|down_7|CP035281.1_2062242_2062491_-	pfam04531, Phage_holin_1, Bacteriophage holin	NA|69aa|down_8|CP035281.1_2062480_2062687_-	NA	NA|244aa|down_9|CP035281.1_2062696_2063428_-	pfam01551, Peptidase_M23, Peptidase family M23
