assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004104435.1_ASM410443v1	CP033388	Akkermansia muciniphila strain CBA5201 chromosome, complete genome	1	327350-327452	1	CRISPRCasFinder	no		cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	Orphan	CCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAG	36	1	1	327386-327416	CP033388.1_26502-26472	NA	1	1	Orphan	cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	NA,NA|74aa|down_1|CP033388.1_329445_329667_+	NA|789aa|up_9|CP033388.1_314895_317262_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|169aa|up_8|CP033388.1_317276_317783_+	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily	NA|219aa|up_7|CP033388.1_317710_318367_+	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily	NA|345aa|up_6|CP033388.1_318363_319398_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|910aa|up_5|CP033388.1_319470_322200_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|258aa|up_4|CP033388.1_322230_323004_+	pfam01252, Peptidase_A8, Signal peptidase (SPase) II	NA|221aa|up_3|CP033388.1_323011_323674_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|161aa|up_2|CP033388.1_323691_324174_+	pfam00581, Rhodanese, Rhodanese-like domain	NA|409aa|up_1|CP033388.1_324176_325403_+	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|578aa|up_0|CP033388.1_325440_327174_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|548aa|down_0|CP033388.1_327715_329359_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|74aa|down_1|CP033388.1_329445_329667_+	NA	NA|116aa|down_2|CP033388.1_329782_330130_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|523aa|down_3|CP033388.1_330239_331808_-	TIGR03790, conserved_hypothetical_protein, TIGR03790 family protein	NA|141aa|down_4|CP033388.1_331943_332366_+	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|522aa|down_5|CP033388.1_332397_333963_+	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit	NA|149aa|down_6|CP033388.1_333984_334431_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|137aa|down_7|CP033388.1_334502_334913_+	COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]	NA|555aa|down_8|CP033388.1_334991_336656_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|260aa|down_9|CP033388.1_336693_337473_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
GCA_004104435.1_ASM410443v1	CP033388	Akkermansia muciniphila strain CBA5201 chromosome, complete genome	2	2637936-2638762	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	Type II-C,Type II-A, Type II-B, or Type II-C?,Type II-B	GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	12,12,6	12	TypeII-C,TypeII-A,TypeII-B,orTypeII-C?,TypeII-B	cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	NA,NA	NA|198aa|up_9|CP033388.1_2624340_2624934_+	pfam13539, Peptidase_M15_4, D-alanyl-D-alanine carboxypeptidase	NA|341aa|up_8|CP033388.1_2624923_2625946_-	pfam13387, DUF4105, Domain of unknown function (DUF4105)	NA|840aa|up_7|CP033388.1_2626006_2628526_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|342aa|up_6|CP033388.1_2628546_2629572_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|395aa|up_5|CP033388.1_2629738_2630923_-	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]	NA|624aa|up_4|CP033388.1_2631120_2632992_-	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like	NA|614aa|up_3|CP033388.1_2633163_2635005_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|276aa|up_2|CP033388.1_2635089_2635917_+	pfam07885, Ion_trans_2, Ion channel	NA|210aa|up_1|CP033388.1_2635970_2636600_-	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain	NA|357aa|up_0|CP033388.1_2636793_2637864_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	cas2|104aa|down_0|CP033388.1_2638823_2639135_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|312aa|down_1|CP033388.1_2639122_2640058_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1110aa|down_2|CP033388.1_2640068_2643398_-	pfam13395, HNH_4, HNH endonuclease	NA|369aa|down_3|CP033388.1_2643762_2644869_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|147aa|down_4|CP033388.1_2644961_2645402_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|429aa|down_5|CP033388.1_2645536_2646823_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|310aa|down_6|CP033388.1_2646859_2647789_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|205aa|down_7|CP033388.1_2647807_2648422_+	PRK00043, thiE, thiamine phosphate synthase	NA|272aa|down_8|CP033388.1_2648469_2649285_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|162aa|down_9|CP033388.1_2649572_2650058_+	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown]
GCA_004104435.1_ASM410443v1	CP033388	Akkermansia muciniphila strain CBA5201 chromosome, complete genome	3	2706861-2707095	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	Orphan	TGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACATAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	39,33,33	0	0	NA	NA	NA:NA:NA	2,3,3	3	Orphan	cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	NA|294aa|up_6|CP033388.1_2702251_2703133_-,NA|94aa|up_5|CP033388.1_2703125_2703407_-,NA|72aa|up_3|CP033388.1_2705046_2705262_-,NA|86aa|up_0|CP033388.1_2706538_2706796_+,NA|66aa|down_0|CP033388.1_2709550_2709748_-,NA|332aa|down_2|CP033388.1_2713678_2714674_-,NA|90aa|down_4|CP033388.1_2715243_2715513_+,NA|68aa|down_6|CP033388.1_2718203_2718407_+,NA|74aa|down_9|CP033388.1_2721801_2722023_+	NA|115aa|up_9|CP033388.1_2699928_2700273_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|115aa|up_8|CP033388.1_2700554_2700899_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|168aa|up_7|CP033388.1_2701079_2701583_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|294aa|up_6|CP033388.1_2702251_2703133_-	NA	NA|94aa|up_5|CP033388.1_2703125_2703407_-	NA	NA|545aa|up_4|CP033388.1_2703403_2705038_-	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein	NA|72aa|up_3|CP033388.1_2705046_2705262_-	NA	NA|207aa|up_2|CP033388.1_2705577_2706198_+	PHA00662, PHA00662, hypothetical protein	NA|98aa|up_1|CP033388.1_2706248_2706542_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|86aa|up_0|CP033388.1_2706538_2706796_+	NA	NA|66aa|down_0|CP033388.1_2709550_2709748_-	NA	NA|1208aa|down_1|CP033388.1_2709896_2713520_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|332aa|down_2|CP033388.1_2713678_2714674_-	NA	NA|150aa|down_3|CP033388.1_2714673_2715123_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|90aa|down_4|CP033388.1_2715243_2715513_+	NA	NA|752aa|down_5|CP033388.1_2715647_2717903_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|68aa|down_6|CP033388.1_2718203_2718407_+	NA	NA|900aa|down_7|CP033388.1_2718399_2721099_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|192aa|down_8|CP033388.1_2721141_2721717_-	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|74aa|down_9|CP033388.1_2721801_2722023_+	NA
GCA_004104435.1_ASM410443v1	CP033388	Akkermansia muciniphila strain CBA5201 chromosome, complete genome	4	2707429-2707924	3,4,3,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder	no		cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	Orphan	CCAGGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCNTNNNNGNGNG,GTTTCAATCCACGCACTCGT--GAGAGTGCGAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	37,33,29,33,33	0	0	NA	NA	NA:NA:NA:NA:NA	6,3,7,6,3	7	Orphan	cas4,DEDDh,csa3,DinG,cas3,cas2,cas1,cas9	NA|294aa|up_6|CP033388.1_2702251_2703133_-,NA|94aa|up_5|CP033388.1_2703125_2703407_-,NA|72aa|up_3|CP033388.1_2705046_2705262_-,NA|86aa|up_0|CP033388.1_2706538_2706796_+,NA|66aa|down_0|CP033388.1_2709550_2709748_-,NA|332aa|down_2|CP033388.1_2713678_2714674_-,NA|90aa|down_4|CP033388.1_2715243_2715513_+,NA|68aa|down_6|CP033388.1_2718203_2718407_+,NA|74aa|down_9|CP033388.1_2721801_2722023_+	NA|115aa|up_9|CP033388.1_2699928_2700273_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|115aa|up_8|CP033388.1_2700554_2700899_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|168aa|up_7|CP033388.1_2701079_2701583_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|294aa|up_6|CP033388.1_2702251_2703133_-	NA	NA|94aa|up_5|CP033388.1_2703125_2703407_-	NA	NA|545aa|up_4|CP033388.1_2703403_2705038_-	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein	NA|72aa|up_3|CP033388.1_2705046_2705262_-	NA	NA|207aa|up_2|CP033388.1_2705577_2706198_+	PHA00662, PHA00662, hypothetical protein	NA|98aa|up_1|CP033388.1_2706248_2706542_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|86aa|up_0|CP033388.1_2706538_2706796_+	NA	NA|66aa|down_0|CP033388.1_2709550_2709748_-	NA	NA|1208aa|down_1|CP033388.1_2709896_2713520_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|332aa|down_2|CP033388.1_2713678_2714674_-	NA	NA|150aa|down_3|CP033388.1_2714673_2715123_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|90aa|down_4|CP033388.1_2715243_2715513_+	NA	NA|752aa|down_5|CP033388.1_2715647_2717903_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|68aa|down_6|CP033388.1_2718203_2718407_+	NA	NA|900aa|down_7|CP033388.1_2718399_2721099_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|192aa|down_8|CP033388.1_2721141_2721717_-	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|74aa|down_9|CP033388.1_2721801_2722023_+	NA
