The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	662801	707924	4991161	holin,portal,integrase,capsid,tail,tRNA,head,terminase	Cronobacter_phage(66.67%)	53	662952:662967	695802:695817
QAX54005.1|662801_664367_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.0e-12
662952:662967	attL	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX54006.1|664363_665011_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAX54007.1|665242_666010_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAX54008.1|666267_668049_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QAX54009.1|668038_669076_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QAX54010.1|669079_669646_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.8	1.3e-18
QAX54011.1|669662_670244_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QAX54012.1|670387_670609_+	regulator	NA	NA	NA	NA	NA
QAX54013.1|670639_671143_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAX54014.1|671152_671380_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54015.1|671369_671795_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAX54016.1|671794_672196_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QAX54017.1|672263_672497_+	DUF2732 family protein	NA	NA	NA	NA	NA
QAX54018.1|672487_673348_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QAX54019.1|673344_675366_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QAX54020.1|675485_675692_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54021.1|675665_675989_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAX54022.1|675985_677047_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QAX54023.1|677043_678819_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAX54024.1|678979_679783_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAX54025.1|679844_680867_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAX54026.1|680870_681572_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAX54027.1|681617_682121_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAX54028.1|682117_682624_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAX54029.1|682620_683328_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QAX54030.1|683324_684452_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAX54031.1|684448_684904_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAX54032.1|684913_685207_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAX54033.1|685203_685545_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAX54034.1|685544_685877_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QAX54035.1|685848_686037_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QAX54036.1|686023_686281_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAX54037.1|686468_688439_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QAX54038.1|688435_688765_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAX54039.1|688761_689946_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAX54040.1|689932_690526_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAX54041.1|690535_692770_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QAX54042.1|692782_693337_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QAX54043.1|693326_694052_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QAX54044.1|694023_694569_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAX54045.1|694568_696272_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
695802:695817	attR	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX54046.1|697023_697209_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54047.1|697178_697943_+	reverse transcriptase	NA	NA	NA	NA	NA
QAX54048.1|698266_698773_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAX58078.1|698896_700744_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
QAX54049.1|700893_702639_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAX54050.1|702874_703090_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAX54051.1|703317_704331_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAX58079.1|704234_704504_-	hypothetical protein	NA	NA	NA	NA	NA
QAX54052.1|704581_705193_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
QAX54053.1|705299_705659_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAX54054.1|705756_706578_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAX54055.1|706682_707924_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.7	5.5e-91
>prophage 2
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1160389	1187499	4991161	transposase,integrase	Escherichia_phage(33.33%)	30	1160327:1160386	1185735:1186554
1160327:1160386	attL	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTG	NA	NA	NA	NA
QAX54485.1|1160389_1161094_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX54486.1|1161154_1161991_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QAX54487.1|1161990_1162794_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	4.9e-24
QAX54488.1|1162854_1163670_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
QAX54489.1|1163977_1164829_-	replication protein	NA	NA	NA	NA	NA
QAX54490.1|1165584_1166289_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX54491.1|1166335_1167640_-|integrase	integrase	integrase	NA	NA	NA	NA
QAX54492.1|1167678_1168386_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QAX54493.1|1168382_1168619_-	mercury resistance protein	NA	NA	NA	NA	NA
QAX54494.1|1168615_1168978_-	transcriptional regulator	NA	NA	NA	NA	NA
QAX54495.1|1168995_1170690_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
QAX58095.1|1170741_1171164_-	mercury transporter MerC	NA	NA	NA	NA	NA
QAX54496.1|1171199_1171475_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
QAX54497.1|1171488_1171839_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
QAX54498.1|1171910_1172345_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA
QAX54499.1|1173628_1174834_-	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
QAX54500.1|1174912_1175539_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QAX54501.1|1175516_1176203_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAX54502.1|1176210_1176597_-	amino acid-binding protein	NA	NA	NA	NA	NA
QAX54503.1|1176589_1176910_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QAX54504.1|1177353_1178559_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
QAX54505.1|1178924_1180133_-|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
QAX54506.1|1180265_1180874_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54507.1|1181123_1181423_-	hypothetical protein	NA	NA	NA	NA	NA
QAX58096.1|1181486_1181717_-	hypothetical protein	NA	NA	NA	NA	NA
QAX54508.1|1181770_1182550_-	DNA repair protein	NA	NA	NA	NA	NA
QAX54509.1|1182605_1183538_-	hypothetical protein	NA	NA	NA	NA	NA
QAX54510.1|1183534_1184050_-	thermonuclease family protein	NA	V5UN65	Mycobacterium_phage	28.3	7.1e-08
QAX54511.1|1185026_1185731_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX54512.1|1186336_1187499_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.9	5.2e-51
1185735:1186554	attR	CAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCCTATTGTCGTCTGGTGATGATTACTCTTCATTCATGCTTGCCGAACGAGTTGAAGCGATGTAAGAGGCCGTAGCTATCGATCCCAATAATCCCAAAATTTACCAGGCCTTTTATGAAGGCTCAAATTTGGCTCAATGGGTACGCCAACGCCTTCTGTGATACTGTAGGGGTTCCAAGTTTTACATAGTGTCTAATTTAATGCTATTTGTGGGTTGATAACCCAACTCACTTCGAACTGGTTTGTCGATTTGCTGAAGTTCTCAATTTGCCTGAAGGTTAATTCTACGCGCTGGATGACAGCTTTGCTGATGCAATGCTGAAGCTATATGGGGGAAAACGGGTGCAGTGGAAAAGGTGCATAATAAGTTAATTGGTCGTGTTAGTACCCCCCTTTAATGTTATGGTTTCTATCTTTATGAAATCTAAAAATAAAAGAACTTGAGCATTACTAAATATTACCGTGAAATCCCTATAAGGTGCACGGTATGATCCCCAAAAGACTGAAGGAAGCTTGATCCTACCCGCGTAATATGGGCACAACCCTAAGCGAGGTTCTGGTTTTCAAATTGTTCCGGACTGAGACCGCCACAGGCACTGTGACGACGCCACCGATTGTAATCACACTCACTATAATTAAACACTGCTGTCCGCATTATTTCCCGGCTGACAAAGTCCTCTCCGTGGATACATTCCACCCTCAGCGTATGGAAGAAGCTTTCCGCACAGGCATTGTCGTAACAACAACCTCTGGCGCTCATAC	NA	NA	NA	NA
>prophage 3
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1275955	1351347	4991161	holin,portal,integrase,transposase,capsid,tail,lysis,tRNA,protease,head,terminase	Salmonella_phage(43.33%)	94	1268036:1268052	1357194:1357210
1268036:1268052	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAX54571.1|1275955_1276993_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAX54572.1|1277108_1277798_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAX54573.1|1278116_1278500_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAX54574.1|1278561_1279149_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAX58105.1|1279251_1280151_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAX54575.1|1280168_1281503_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAX54576.1|1281633_1282371_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
QAX54577.1|1282355_1283978_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAX54578.1|1284062_1284242_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54579.1|1284241_1284406_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
QAX54580.1|1284402_1284978_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAX54581.1|1285009_1285660_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAX54582.1|1285659_1286616_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAX54583.1|1286612_1287092_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QAX54584.1|1287121_1287238_+	transcriptional regulator	NA	NA	NA	NA	NA
QAX54585.1|1287589_1288819_+	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAX54586.1|1288796_1289081_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAX54587.1|1289121_1289361_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX54588.1|1289403_1290561_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAX54589.1|1290523_1293451_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAX54590.1|1293577_1293928_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAX54591.1|1293949_1294108_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAX54592.1|1294506_1294911_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
QAX54593.1|1295040_1295277_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
QAX54594.1|1295242_1295617_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAX54595.1|1295701_1296685_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAX54596.1|1296687_1297437_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAX54597.1|1297447_1297795_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
QAX54598.1|1297791_1298316_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
QAX54599.1|1298315_1298789_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
QAX54600.1|1299180_1299462_+	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	92.5	1.4e-47
QAX54601.1|1299653_1299893_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	1.1e-37
QAX54602.1|1299882_1300188_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
QAX54603.1|1300227_1300830_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	1.1e-108
QAX54604.1|1300829_1301036_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAX54605.1|1301038_1301650_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAX54606.1|1301646_1301787_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX54607.1|1301783_1302461_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAX54608.1|1302457_1302643_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54609.1|1302733_1303297_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAX54610.1|1303803_1303992_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54611.1|1304206_1304893_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAX58106.1|1305168_1305498_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAX54612.1|1305481_1305934_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
QAX58107.1|1305951_1306404_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAX54613.1|1306639_1307041_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAX54614.1|1307327_1307873_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAX54615.1|1307844_1309776_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAX54616.1|1309759_1309963_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAX54617.1|1309959_1311540_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAX54618.1|1311529_1313026_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAX54619.1|1313038_1313386_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAX54620.1|1313440_1314469_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAX54621.1|1314526_1314886_+	DNA packaging protein	NA	NA	NA	NA	NA
QAX54622.1|1314896_1315280_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAX54623.1|1315307_1315886_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAX58108.1|1315934_1317065_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
QAX54624.1|1317173_1317575_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAX54625.1|1317582_1318329_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.5	1.9e-99
QAX54626.1|1318379_1318775_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAX54627.1|1318771_1319110_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAX54628.1|1319081_1322177_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
QAX54629.1|1322179_1322509_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAX54630.1|1322518_1323217_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAX54631.1|1323223_1323961_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAX54632.1|1323858_1324506_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAX54633.1|1324567_1327930_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAX54634.1|1327968_1328211_+	hypothetical protein	NA	NA	NA	NA	NA
QAX54635.1|1328264_1330637_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAX54636.1|1330633_1331458_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAX54637.1|1331447_1332026_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAX54638.1|1332122_1332350_-	phage virulence factor	NA	NA	NA	NA	NA
QAX54639.1|1332456_1332669_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAX58109.1|1332731_1332797_+	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
QAX54640.1|1333376_1333541_+|integrase	integrase	integrase	NA	NA	NA	NA
QAX54641.1|1333461_1334007_-|transposase	transposase	transposase	NA	NA	NA	NA
QAX54642.1|1334253_1334391_-	hypothetical protein	NA	NA	NA	NA	NA
QAX54643.1|1334869_1336363_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAX54644.1|1336767_1338567_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAX54645.1|1338583_1339558_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAX58110.1|1339831_1340512_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAX54646.1|1340508_1341414_+	GTPase Era	NA	NA	NA	NA	NA
QAX54647.1|1341425_1342154_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAX54648.1|1342165_1342897_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAX54649.1|1342896_1343277_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAX54650.1|1343388_1343649_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
QAX54651.1|1343686_1344613_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAX54652.1|1344728_1345925_+	MFS transporter	NA	NA	NA	NA	NA
QAX54653.1|1345946_1346864_+	oxidoreductase	NA	NA	NA	NA	NA
QAX54654.1|1346902_1347751_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAX54655.1|1347866_1348760_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAX54656.1|1348770_1350132_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAX54657.1|1350135_1350771_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAX54658.1|1350795_1351347_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1357194:1357210	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 4
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1722818	1735102	4991161	holin,tail	Salmonella_phage(40.0%)	10	NA	NA
QAX54988.1|1722818_1725185_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
QAX58122.1|1725513_1726503_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
QAX54989.1|1726517_1726886_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
QAX54990.1|1726914_1728246_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
QAX54991.1|1728542_1728872_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
QAX54992.1|1729464_1730706_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
QAX54993.1|1730708_1731236_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
QAX54994.1|1731613_1732057_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
QAX54995.1|1734280_1734571_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
QAX54996.1|1734598_1735102_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 5
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1807154	1816325	4991161	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAX55065.1|1807154_1808102_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAX55066.1|1808085_1808817_+	ABC transporter permease	NA	NA	NA	NA	NA
QAX55067.1|1808797_1808905_-	protein YohO	NA	NA	NA	NA	NA
QAX55068.1|1808964_1809696_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAX55069.1|1809918_1811604_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
QAX55070.1|1811600_1812320_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAX55071.1|1812366_1812834_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAX55072.1|1812890_1813421_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAX55073.1|1813592_1814051_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAX55074.1|1814291_1816325_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1884633	1895139	4991161		Enterobacteria_phage(37.5%)	10	NA	NA
QAX55130.1|1884633_1886037_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
QAX55131.1|1886214_1887108_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAX55132.1|1887484_1888570_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAX55133.1|1888569_1889469_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
QAX55134.1|1889516_1890395_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
QAX55135.1|1890395_1890947_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
QAX55136.1|1890952_1891945_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAX55137.1|1891941_1892715_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAX55138.1|1892719_1893799_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAX55139.1|1893825_1895139_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	1981133	2031820	4991161	holin,portal,integrase,capsid,tail,protease,head,plate,terminase	Salmonella_phage(80.0%)	72	1975711:1975725	1991841:1991855
1975711:1975725	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX55223.1|1981133_1981607_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
QAX55224.1|1982254_1982545_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
QAX55225.1|1982916_1983714_-	protein MtfA	NA	NA	NA	NA	NA
QAX55226.1|1984005_1984995_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAX55227.1|1984996_1985239_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAX55228.1|1985263_1985833_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAX55229.1|1985836_1986418_-	molecular chaperone DnaJ	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
QAX55230.1|1986428_1986686_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
QAX55231.1|1986687_1987221_-	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
QAX55232.1|1987291_1987831_-	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAX55233.1|1987967_1988795_-	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
QAX55234.1|1988852_1989224_-	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
QAX55235.1|1989571_1989988_+	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	6.4e-76
QAX55236.1|1989950_1990289_-	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
QAX55237.1|1990494_1991190_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAX55238.1|1991163_1991349_+	amino acid permease	NA	NA	NA	NA	NA
QAX55239.1|1991287_1991512_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAX55240.1|1991540_1992095_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
1991841:1991855	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX55241.1|1992091_1993234_+	peptidase	NA	A0A1C9IHV9	Salmonella_phage	100.0	1.5e-212
QAX55242.1|1993230_1993455_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAX55243.1|1993451_1994426_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	100.0	2.3e-169
QAX55244.1|1994422_1994896_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	100.0	4.9e-56
QAX55245.1|1994892_1995768_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	99.3	2.7e-169
QAX55246.1|1995776_1996166_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	100.0	4.9e-70
QAX55247.1|1996137_1997043_+	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	100.0	1.1e-162
QAX58130.1|1997050_1998040_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	100.0	2.1e-194
QAX55248.1|1998053_1998806_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
QAX58131.1|1998956_1999214_+	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
QAX55249.1|1999359_1999746_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
QAX55250.1|1999732_2000014_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
QAX55251.1|2000013_2000628_+	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
QAX55252.1|2000624_2001017_+	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
QAX58132.1|2001479_2001812_+	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
QAX55253.1|2001862_2002213_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
QAX55254.1|2002329_2002833_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
QAX55255.1|2002829_2004563_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.5	0.0e+00
QAX55256.1|2004574_2004757_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAX55257.1|2004756_2005998_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
QAX55258.1|2005939_2006626_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	97.4	2.0e-122
QAX55259.1|2006640_2007846_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	98.0	9.4e-221
QAX55260.1|2007895_2008096_+	hypothetical protein	NA	S5FNU1	Shigella_phage	98.5	5.8e-27
QAX55261.1|2008098_2008422_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	97.2	2.4e-54
QAX55262.1|2008418_2008823_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	74.6	3.7e-52
QAX55263.1|2008794_2009307_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	87.6	1.6e-81
QAX55264.1|2009303_2009861_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	93.4	1.1e-96
QAX55265.1|2009882_2010047_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	94.4	7.1e-23
QAX55266.1|2010036_2011533_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
QAX55267.1|2011532_2011889_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	99.2	1.3e-61
QAX55268.1|2011885_2012212_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAX55269.1|2012296_2014222_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	97.3	0.0e+00
QAX55270.1|2014238_2014688_+	hypothetical protein	NA	NA	NA	NA	NA
QAX55271.1|2014747_2016088_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.3	9.7e-251
QAX55272.1|2016084_2017143_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	3.0e-202
QAX55273.1|2017142_2017676_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
QAX55274.1|2017680_2018094_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	99.3	1.2e-74
QAX55275.1|2018086_2019166_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.2	7.2e-204
QAX55276.1|2019168_2019756_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAX55277.1|2019742_2021305_+|tail	phage tail protein	tail	A0A192Y7M1	Salmonella_phage	98.5	1.7e-283
QAX55278.1|2021274_2021880_+|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
QAX55279.1|2021993_2022227_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
QAX55280.1|2022462_2022876_-	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
QAX55281.1|2022872_2023085_-	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
QAX55282.1|2024058_2024301_+	hypothetical protein	NA	NA	NA	NA	NA
QAX55283.1|2024278_2024440_+	hypothetical protein	NA	NA	NA	NA	NA
QAX55284.1|2024566_2024986_+	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAX55285.1|2024988_2026257_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAX55286.1|2026711_2026924_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAX58133.1|2026934_2027123_+	cold-shock protein	NA	NA	NA	NA	NA
QAX55287.1|2027383_2028580_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
QAX55288.1|2029229_2029529_+	hypothetical protein	NA	NA	NA	NA	NA
QAX55289.1|2029620_2030316_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QAX55290.1|2030389_2031820_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 8
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	2135864	2142673	4991161	tail,integrase	Salmonella_phage(33.33%)	12	2138074:2138096	2147789:2147811
QAX55400.1|2135864_2136095_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
QAX55401.1|2136232_2136607_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QAX55402.1|2136607_2137483_+	copper resistance D family protein	NA	NA	NA	NA	NA
QAX55403.1|2137499_2137853_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QAX58138.1|2137910_2138030_+	hypothetical protein	NA	NA	NA	NA	NA
2138074:2138096	attL	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
QAX58137.1|2138226_2139081_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
QAX58139.1|2139140_2139635_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
QAX55404.1|2139824_2140055_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
QAX55405.1|2140108_2140642_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
QAX55406.1|2140898_2141066_-	lytic enzyme	NA	NA	NA	NA	NA
QAX55407.1|2141130_2141319_-	hypothetical protein	NA	NA	NA	NA	NA
QAX55408.1|2141791_2142673_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
2147789:2147811	attR	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
>prophage 9
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	2929752	3020669	4991161	holin,tail,lysis,tRNA,protease,terminase	Salmonella_phage(59.57%)	95	NA	NA
QAX56188.1|2929752_2930433_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
QAX56189.1|2930778_2930988_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56190.1|2931053_2931713_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
QAX56191.1|2931799_2932129_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAX56192.1|2932125_2932407_-	acylphosphatase	NA	NA	NA	NA	NA
QAX56193.1|2932455_2933235_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAX56194.1|2933260_2933809_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAX56195.1|2934023_2935235_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAX56196.1|2935292_2935610_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAX56197.1|2935654_2936071_-	CoA-binding protein	NA	NA	NA	NA	NA
QAX56198.1|2936241_2936904_+	DUF2057 family protein	NA	NA	NA	NA	NA
QAX56199.1|2936998_2937457_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAX56200.1|2937492_2939547_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
QAX56201.1|2939670_2940117_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAX56202.1|2940135_2942289_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAX56203.1|2942275_2942881_-	DNA transformation protein	NA	NA	NA	NA	NA
QAX56204.1|2943097_2943607_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAX56205.1|2943963_2945016_+	outer membrane protein A	NA	NA	NA	NA	NA
QAX56206.1|2945087_2945540_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAX56207.1|2945725_2947486_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAX56208.1|2947554_2948073_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAX56209.1|2948172_2948340_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAX56210.1|2948595_2949159_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QAX56211.1|2949155_2950796_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QAX56212.1|2950800_2952054_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QAX56213.1|2952068_2953976_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
QAX56214.1|2953988_2956097_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAX56215.1|2956195_2957305_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAX56216.1|2957301_2957844_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAX56217.1|2958009_2959020_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAX56218.1|2959227_2961840_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAX56219.1|2962266_2962458_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAX56220.1|2962728_2963415_+	virulence protein	NA	NA	NA	NA	NA
QAX56221.1|2963399_2963699_+	hypothetical protein	NA	NA	NA	NA	NA
QAX56222.1|2963767_2964394_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAX56223.1|2965041_2966010_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
QAX56224.1|2966485_2967067_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAX56225.1|2967066_2969505_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
QAX56226.1|2969558_2969801_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56227.1|2969839_2973190_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAX56228.1|2973261_2973966_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
QAX56229.1|2973863_2974601_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAX56230.1|2974610_2975306_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAX56231.1|2975395_2975929_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAX56232.1|2976045_2976543_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAX56233.1|2976642_2976975_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
QAX56234.1|2978095_2978641_-|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
QAX56235.1|2978654_2978870_-	hypothetical protein	NA	NA	NA	NA	NA
QAX58176.1|2979109_2979556_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
QAX56236.1|2979573_2980026_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
QAX58177.1|2980009_2980339_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
QAX56237.1|2980614_2981301_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAX56238.1|2981661_2982111_+	hypothetical protein	NA	NA	NA	NA	NA
QAX56239.1|2982246_2982372_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56240.1|2982566_2983256_-	antiterminator	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
QAX56241.1|2983252_2983393_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX56242.1|2983389_2984001_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
QAX56243.1|2984003_2984210_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.0e-34
QAX56244.1|2984209_2984812_-	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
QAX56245.1|2984896_2985118_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56246.1|2985227_2985461_-	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
QAX56247.1|2986052_2986649_+	hypothetical protein	NA	NA	NA	NA	NA
QAX56248.1|2986660_2987638_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
QAX58178.1|2987692_2987950_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56249.1|2987949_2988594_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
QAX56250.1|2988597_2988906_-	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
QAX56251.1|2988909_2989368_-	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
QAX56252.1|2989364_2989712_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
QAX56253.1|2989722_2990472_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
QAX56254.1|2990474_2991458_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
QAX56255.1|2991542_2991863_-	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
QAX56256.1|2991897_2992125_-	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
QAX56257.1|2992230_2992665_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
QAX56258.1|2992961_2993093_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
QAX56259.1|2993141_2993492_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
QAX56260.1|2993618_2996819_+	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
QAX56261.1|2996781_2997939_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
QAX56262.1|2997981_2998221_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX56263.1|2998261_2998510_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAX56264.1|2998554_2999847_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
QAX56265.1|3000041_3001244_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAX56266.1|3001321_3002758_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAX56267.1|3003002_3004217_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
QAX56268.1|3004303_3004537_+	hypothetical protein	NA	NA	NA	NA	NA
QAX56269.1|3004533_3004995_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAX56270.1|3005195_3006596_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
QAX56271.1|3007202_3008294_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
QAX56272.1|3008478_3009669_+	aspartate aminotransferase	NA	NA	NA	NA	NA
QAX56273.1|3009730_3010378_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QAX56274.1|3010405_3010954_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
QAX56275.1|3011213_3013055_-	L,D-transpeptidase	NA	NA	NA	NA	NA
QAX56276.1|3013399_3017866_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
QAX56277.1|3017865_3018570_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
QAX56278.1|3018550_3019873_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
QAX56279.1|3019865_3020669_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 10
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	3070732	3079464	4991161	transposase,protease	Enterobacteria_phage(14.29%)	10	NA	NA
QAX56317.1|3070732_3071987_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
QAX56318.1|3072002_3072278_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56319.1|3072450_3072909_-|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
QAX56320.1|3072865_3073048_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56321.1|3073100_3075377_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAX56322.1|3075407_3075728_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAX56323.1|3076051_3076273_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAX56324.1|3076227_3076422_-	hypothetical protein	NA	NA	NA	NA	NA
QAX56325.1|3076402_3078349_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
QAX56326.1|3078345_3079464_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 11
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	3687779	3733650	4991161	portal,integrase,coat,tail,lysis,protease,terminase	Salmonella_phage(56.72%)	68	3679481:3679497	3742864:3742880
3679481:3679497	attL	ACGCGAATTTCAATATC	NA	NA	NA	NA
QAX56880.1|3687779_3687959_-	hypothetical protein	NA	M1E3P7	Enterobacteria_phage	92.3	4.3e-13
QAX56881.1|3688075_3688438_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
QAX56882.1|3688434_3689367_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
QAX56883.1|3689356_3690814_+	hypothetical protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
QAX56884.1|3690872_3692876_-	endorhamnosidase	NA	E7C9U9	Salmonella_phage	100.0	0.0e+00
QAX56885.1|3693011_3693263_+	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	100.0	1.4e-38
QAX56886.1|3693362_3693542_+	hypothetical protein	NA	B8K1I9	Salmonella_phage	100.0	2.1e-28
QAX56887.1|3693555_3693921_-	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
QAX56888.1|3693951_3694281_+	hypothetical protein	NA	NA	NA	NA	NA
QAX56889.1|3694298_3696212_-	DNA transfer protein	NA	E7C9U6	Salmonella_phage	100.0	0.0e+00
QAX56890.1|3696211_3697495_-	acyltransferase	NA	E7C9U5	Salmonella_phage	94.7	4.5e-221
QAX56891.1|3697505_3698195_-	DNA transfer protein	NA	E7C9U4	Salmonella_phage	100.0	4.3e-109
QAX56892.1|3698197_3698653_-	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	100.0	1.4e-87
QAX56893.1|3698652_3699354_-|tail	phage tail protein	tail	B8K1I3	Salmonella_phage	98.7	1.8e-70
QAX56894.1|3699357_3700776_-	hypothetical protein	NA	A0A220NQZ5	Salmonella_phage	99.6	5.4e-276
QAX56895.1|3700735_3701236_-	hypothetical protein	NA	E7C9U0	Salmonella_phage	100.0	2.5e-90
QAX56896.1|3701219_3701780_-	hypothetical protein	NA	E7C9T9	Salmonella_phage	100.0	1.3e-103
QAX56897.1|3701820_3703113_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.5	1.2e-242
QAX56898.1|3703112_3704024_-	scaffolding protein	NA	Q5C834	Enterobacteria_phage	100.0	1.7e-161
QAX56899.1|3704037_3706215_-|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
QAX56900.1|3706214_3707714_-|terminase	terminase	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
QAX56901.1|3707691_3708180_-	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
QAX56902.1|3708183_3708588_-	Decoration protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
QAX56903.1|3708587_3708977_-	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
QAX56904.1|3708980_3709223_-	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
QAX56905.1|3709445_3709976_-	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	100.0	1.3e-94
QAX56906.1|3709929_3710154_-	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	88.7	3.6e-25
QAX56907.1|3710188_3710656_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
QAX58207.1|3710652_3711150_-	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
QAX56908.1|3711127_3711331_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QAX56909.1|3711867_3712641_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	96.5	1.2e-128
QAX56910.1|3712798_3713041_-	hypothetical protein	NA	A0A1V0E5R3	Salmonella_phage	92.5	1.3e-36
QAX56911.1|3713037_3713220_-	hypothetical protein	NA	C6ZR61	Salmonella_phage	95.0	3.6e-23
QAX56912.1|3713207_3713678_-	hypothetical protein	NA	C6ZR60	Salmonella_phage	99.4	8.8e-90
QAX56913.1|3713658_3713895_-	hypothetical protein	NA	C6ZR59	Salmonella_phage	97.4	3.9e-38
QAX56914.1|3713887_3714064_-	protein ninF	NA	A0A192Y808	Salmonella_phage	91.4	6.9e-24
QAX56915.1|3714056_3714458_-	hypothetical protein	NA	G9L690	Escherichia_phage	85.7	2.7e-63
QAX56916.1|3714460_3714637_-	NinE family protein	NA	A0A220NRK6	Escherichia_phage	98.3	7.9e-28
QAX56917.1|3714603_3714777_-	protein ninD	NA	C6ZR56	Salmonella_phage	93.0	7.0e-29
QAX56918.1|3714773_3715646_-	hypothetical protein	NA	I6R0S6	Salmonella_phage	93.4	6.1e-169
QAX56919.1|3715642_3716101_-	recombination protein NinB	NA	K7PKW7	Enterobacterial_phage	98.6	3.0e-79
QAX56920.1|3716156_3717533_-	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	99.3	4.8e-253
QAX56921.1|3717529_3718363_-	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	99.6	2.4e-151
QAX56922.1|3718355_3718502_-	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
QAX56923.1|3718536_3718818_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
QAX56924.1|3718928_3719144_-	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
QAX58208.1|3719262_3719925_+	LexA family transcriptional regulator	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
QAX56925.1|3720276_3720579_+	regulator	NA	B8K1E6	Salmonella_phage	97.0	6.3e-49
QAX56926.1|3720591_3721179_-	superinfection exclusion protein B	NA	A0A0M4R594	Salmonella_phage	99.0	6.2e-85
QAX56927.1|3721371_3721872_+	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	1.2e-31
QAX56928.1|3721905_3722193_+	hypothetical protein	NA	Q76H36	Enterobacteria_phage	97.9	1.1e-47
QAX56929.1|3722512_3722686_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
QAX56930.1|3722666_3722855_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QAX56931.1|3722984_3723692_+	recombinase	NA	A0A1R3Y600	Salmonella_virus	98.7	2.9e-137
QAX56932.1|3723691_3723976_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
QAX56933.1|3724022_3724316_+	DUF2856 family protein	NA	A0A1R3Y5T7	Salmonella_virus	100.0	3.2e-50
QAX56934.1|3724326_3724497_+	DUF2737 family protein	NA	I6S642	Salmonella_phage	94.6	5.7e-23
QAX56935.1|3724493_3725018_+	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	96.9	4.2e-48
QAX56936.1|3725014_3725920_+	ead/Ea22-like family protein	NA	A0A0M5M1J9	Salmonella_phage	95.4	5.3e-51
QAX56937.1|3725921_3726140_+	DUF4014 domain-containing protein	NA	C6ZR28	Salmonella_phage	98.6	3.7e-35
QAX56938.1|3726143_3726815_+	DUF550 domain-containing protein	NA	A0A220NQU1	Salmonella_phage	64.6	5.6e-90
QAX56939.1|3727441_3727621_+	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
QAX56940.1|3727721_3728351_+	Eac protein	NA	A0A220NQT7	Salmonella_phage	96.7	7.3e-116
QAX56941.1|3728353_3728704_+	DNA-binding protein	NA	A0A075B8K2	Enterobacteria_phage	99.1	1.1e-60
QAX58209.1|3729075_3729744_+|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	100.0	8.0e-129
QAX56942.1|3729949_3731200_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
QAX56943.1|3731211_3732315_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAX56944.1|3732597_3733650_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
3742864:3742880	attR	ACGCGAATTTCAATATC	NA	NA	NA	NA
>prophage 12
CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4991161	4571689	4618733	4991161	tail,tRNA,plate	Burkholderia_phage(40.91%)	50	NA	NA
QAX57678.1|4571689_4572688_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAX57679.1|4572775_4574086_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAX57680.1|4574332_4574848_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAX57681.1|4574946_4575156_-	CsbD family protein	NA	NA	NA	NA	NA
QAX58248.1|4575177_4575291_-	hypothetical protein	NA	NA	NA	NA	NA
QAX57682.1|4575287_4576613_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
QAX57683.1|4576791_4577400_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAX57684.1|4577508_4577877_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAX57685.1|4578047_4580468_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAX57686.1|4580566_4581439_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAX57687.1|4581452_4581950_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAX57688.1|4582130_4583048_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAX57689.1|4583211_4584570_-	maltoporin	NA	NA	NA	NA	NA
QAX57690.1|4584658_4585768_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAX57691.1|4586129_4587320_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAX57692.1|4587451_4588996_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAX57693.1|4589010_4589901_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAX57694.1|4590066_4590477_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAX57695.1|4590619_4592716_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAX57696.1|4592715_4593453_-	hypothetical protein	NA	NA	NA	NA	NA
QAX57697.1|4593449_4594088_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAX57698.1|4594151_4594394_-	outer membrane protein	NA	NA	NA	NA	NA
QAX57699.1|4594837_4596487_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAX57700.1|4596831_4598181_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAX57701.1|4598313_4598661_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAX57702.1|4599236_4599524_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAX57703.1|4599526_4600132_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAX57704.1|4600144_4600459_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAX57705.1|4600618_4601074_+	hypothetical protein	NA	NA	NA	NA	NA
QAX57706.1|4601070_4601268_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAX57707.1|4601257_4602685_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAX57708.1|4602684_4603209_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAX57709.1|4603260_4603578_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAX57710.1|4603537_4603666_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAX57711.1|4603762_4606117_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
QAX57712.1|4606116_4607070_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAX57713.1|4607069_4607279_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAX57714.1|4607266_4608310_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
QAX57715.1|4608319_4609042_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
QAX57716.1|4609369_4609732_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAX57717.1|4609728_4610658_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
QAX57718.1|4610657_4612205_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
QAX57719.1|4612368_4612728_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAX57720.1|4612718_4613834_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
QAX57721.1|4613826_4614459_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAX57722.1|4614461_4616207_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
QAX57723.1|4616211_4616817_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
QAX57724.1|4616813_4617269_+	hypothetical protein	NA	NA	NA	NA	NA
QAX57725.1|4617517_4617808_+	hypothetical protein	NA	NA	NA	NA	NA
QAX57726.1|4618004_4618733_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 1
CP033256	Salmonella enterica subsp. enterica strain CFSA12 plasmid pCFSA12, complete sequence	147918	96516	104403	147918	integrase,transposase	Escherichia_phage(33.33%)	10	98421:98472	112209:112260
QAX53334.1|96516_97128_-	hypothetical protein	NA	A0A248SKW5	Klebsiella_phage	71.1	1.2e-09
QAX53335.1|97148_97412_-	hypothetical protein	NA	M9UXL5	Escherichia_phage	46.5	3.2e-09
QAX53336.1|97715_98420_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX53337.1|98310_98628_-	hypothetical protein	NA	M9Q1K0	Clostridium_phage	54.0	6.3e-07
98421:98472	attL	GGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCC	NA	NA	NA	NA
QAX53338.1|98753_99368_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QAX53339.1|99306_100320_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QAX53397.1|100486_101329_+	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA	NA
QAX53340.1|101424_102033_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
QAX53341.1|102090_102882_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QAX53342.1|103143_104403_+	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
112209:112260	attR	GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCC	NA	NA	NA	NA
