assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004124055.1_ASM412405v1	CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	2	980160-981653	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,20	24	TypeI-E	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	NA,NA|57aa|down_2|CP033257.1_982926_983097_+,NA|75aa|down_7|CP033257.1_988899_989124_-	NA|381aa|up_9|CP033257.1_965958_967101_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP033257.1_967144_969901_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP033257.1_969958_971254_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP033257.1_971305_973540_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP033257.1_973623_973980_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP033257.1_973945_974242_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP033257.1_975009_975810_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP033257.1_976037_977675_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP033257.1_977757_979056_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP033257.1_979191_979863_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP033257.1_981750_982548_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP033257.1_982635_982998_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP033257.1_982926_983097_+	NA	NA|600aa|down_3|CP033257.1_983421_985221_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP033257.1_985220_986933_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP033257.1_987008_987743_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP033257.1_987830_988784_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|down_7|CP033257.1_988899_989124_-	NA	cse2gr11|187aa|down_8|CP033257.1_993455_994016_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|CP033257.1_994029_995088_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCA_004124055.1_ASM412405v1	CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	3	997784-999096	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	997812-997844|997813-997844	CP033257.1_1831419-1831387|CP033257.1_1831418-1831387	I-E:I-E:I-E	20,21,21	21	TypeI-E	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	NA|75aa|up_6|CP033257.1_988899_989124_-,NA	NA|571aa|up_9|CP033257.1_985220_986933_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP033257.1_987008_987743_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|CP033257.1_987830_988784_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|up_6|CP033257.1_988899_989124_-	NA	cse2gr11|187aa|up_5|CP033257.1_993455_994016_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP033257.1_994029_995088_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP033257.1_995098_995845_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP033257.1_995826_996477_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP033257.1_996473_997394_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP033257.1_997393_997687_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP033257.1_999761_1000808_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP033257.1_1001058_1001967_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP033257.1_1001976_1003416_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP033257.1_1003402_1004008_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP033257.1_1004025_1004382_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP033257.1_1004572_1004884_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP033257.1_1004902_1005613_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP033257.1_1005612_1006092_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP033257.1_1006088_1007138_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP033257.1_1007118_1007880_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004124055.1_ASM412405v1	CP033257	Salmonella enterica subsp. enterica strain CFSA12 chromosome, complete genome	4	999170-999747	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,PD-DExK,RT,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	NA|75aa|up_6|CP033257.1_988899_989124_-,NA	NA|571aa|up_9|CP033257.1_985220_986933_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP033257.1_987008_987743_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|CP033257.1_987830_988784_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|up_6|CP033257.1_988899_989124_-	NA	cse2gr11|187aa|up_5|CP033257.1_993455_994016_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP033257.1_994029_995088_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP033257.1_995098_995845_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP033257.1_995826_996477_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP033257.1_996473_997394_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP033257.1_997393_997687_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP033257.1_999761_1000808_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP033257.1_1001058_1001967_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP033257.1_1001976_1003416_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP033257.1_1003402_1004008_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP033257.1_1004025_1004382_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP033257.1_1004572_1004884_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP033257.1_1004902_1005613_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP033257.1_1005612_1006092_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP033257.1_1006088_1007138_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP033257.1_1007118_1007880_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
