assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004124135.1_ASM412413v1	CP033336	Streptococcus pyogenes strain TSPY165 chromosome, complete genome	1	594418-594512	1	CRISPRCasFinder	no	cas3	cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	Unclear	GTCTCACCCTTCACGGGTGAGTGGATTG	28	0	0	NA	NA	NA	1	1	Unclear	cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	NA,NA	NA|113aa|up_9|CP033336.1_584613_584952_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|102aa|up_8|CP033336.1_584953_585259_+	cd06983, cupin_dsy2733, Desulfitobacterium hafniense dsy2733 and related proteins, cupin domain	NA|358aa|up_7|CP033336.1_585693_586767_-	TIGR01357, 3-dehydroquinate_synthase, 3-dehydroquinate synthase	NA|251aa|up_6|CP033336.1_586822_587575_-	PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate synthase; Provisional	NA|85aa|up_5|CP033336.1_588054_588309_+	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|132aa|up_4|CP033336.1_588329_588725_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|60aa|up_3|CP033336.1_589149_589329_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|883aa|up_2|CP033336.1_589889_592538_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|421aa|up_1|CP033336.1_592804_594067_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|60aa|up_0|CP033336.1_594089_594269_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|320aa|down_0|CP033336.1_594641_595601_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|311aa|down_1|CP033336.1_595692_596625_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|237aa|down_2|CP033336.1_596845_597556_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_3|CP033336.1_597568_598192_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|247aa|down_4|CP033336.1_599427_600168_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_5|CP033336.1_600164_601898_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_6|CP033336.1_601970_603050_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_7|CP033336.1_603063_603780_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_8|CP033336.1_603945_604419_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|CP033336.1_604560_605241_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCA_004124135.1_ASM412413v1	CP033336	Streptococcus pyogenes strain TSPY165 chromosome, complete genome	2	827141-827241	2	CRISPRCasFinder	no		cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	NA|262aa|up_6|CP033336.1_818524_819310_-,NA	NA|755aa|up_9|CP033336.1_813901_816166_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|CP033336.1_816422_817043_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|CP033336.1_817783_818398_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|CP033336.1_818524_819310_-	NA	NA|233aa|up_5|CP033336.1_819319_820018_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|CP033336.1_820017_820389_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|CP033336.1_820573_823684_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|CP033336.1_823763_824777_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|CP033336.1_824839_826342_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|CP033336.1_826559_827117_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|CP033336.1_827292_829107_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|CP033336.1_829302_829638_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|CP033336.1_829743_830385_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|CP033336.1_830394_831024_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|CP033336.1_831039_831876_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|CP033336.1_832245_833019_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|CP033336.1_833388_834624_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|CP033336.1_834743_836066_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|CP033336.1_836595_838914_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|CP033336.1_839276_839525_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCA_004124135.1_ASM412413v1	CP033336	Streptococcus pyogenes strain TSPY165 chromosome, complete genome	3	1026339-1027101	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	11,11,7	11	TypeII-C,TypeII-B,TypeII-A	cas3,csn2,cas2,cas1,cas9,csm6,DinG,DEDDh,csa3	NA|44aa|up_0|CP033336.1_1026028_1026160_-,NA|214aa|down_8|CP033336.1_1036998_1037640_-	NA|276aa|up_9|CP033336.1_1017933_1018761_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP033336.1_1018757_1019567_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP033336.1_1019583_1020075_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP033336.1_1020101_1020527_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP033336.1_1020733_1021753_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP033336.1_1021882_1022320_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|389aa|up_3|CP033336.1_1022504_1023671_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP033336.1_1023858_1025691_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|67aa|up_1|CP033336.1_1025760_1025961_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|44aa|up_0|CP033336.1_1026028_1026160_-	NA	csn2|221aa|down_0|CP033336.1_1027203_1027866_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP033336.1_1027855_1028197_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP033336.1_1028193_1029063_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP033336.1_1029062_1033169_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP033336.1_1033647_1034280_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP033336.1_1034279_1035044_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP033336.1_1035043_1035796_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP033336.1_1035805_1036936_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP033336.1_1036998_1037640_-	NA	NA|452aa|down_9|CP033336.1_1037773_1039129_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
