The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	662814	707937	4999314	terminase,tail,portal,head,holin,capsid,integrase,tRNA	Cronobacter_phage(66.67%)	53	662965:662980	695815:695830
QAX39625.1|662814_664380_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.0e-12
662965:662980	attL	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX39626.1|664376_665024_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAX39627.1|665255_666023_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAX39628.1|666280_668062_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QAX39629.1|668051_669089_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QAX39630.1|669092_669659_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.8	1.3e-18
QAX39631.1|669675_670257_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QAX39632.1|670400_670622_+	regulator	NA	NA	NA	NA	NA
QAX39633.1|670652_671156_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAX39634.1|671165_671393_+	hypothetical protein	NA	NA	NA	NA	NA
QAX39635.1|671382_671808_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAX39636.1|671807_672209_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.2	9.3e-48
QAX39637.1|672276_672510_+	DUF2732 family protein	NA	NA	NA	NA	NA
QAX39638.1|672500_673361_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QAX39639.1|673357_675379_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QAX39640.1|675498_675705_+	hypothetical protein	NA	NA	NA	NA	NA
QAX39641.1|675678_676002_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAX39642.1|675998_677060_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QAX39643.1|677056_678832_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAX39644.1|678992_679796_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAX39645.1|679857_680880_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAX39646.1|680883_681585_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAX39647.1|681630_682134_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAX39648.1|682130_682637_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAX39649.1|682633_683341_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QAX39650.1|683337_684465_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAX39651.1|684461_684917_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAX39652.1|684926_685220_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAX39653.1|685216_685558_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAX39654.1|685557_685890_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QAX39655.1|685861_686050_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QAX39656.1|686036_686294_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAX39657.1|686481_688452_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QAX39658.1|688448_688778_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAX39659.1|688774_689959_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAX39660.1|689945_690539_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAX39661.1|690548_692783_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QAX39662.1|692795_693350_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QAX39663.1|693339_694065_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QAX39664.1|694036_694582_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAX39665.1|694581_696285_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
695815:695830	attR	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX39666.1|697036_697222_+	hypothetical protein	NA	NA	NA	NA	NA
QAX39667.1|697191_697956_+	reverse transcriptase	NA	NA	NA	NA	NA
QAX39668.1|698279_698786_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAX43684.1|698909_700757_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
QAX39669.1|700906_702652_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAX39670.1|702887_703103_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAX39671.1|703330_704344_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAX43685.1|704247_704517_-	hypothetical protein	NA	NA	NA	NA	NA
QAX39672.1|704594_705206_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
QAX39673.1|705312_705672_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAX39674.1|705769_706591_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAX39675.1|706695_707937_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.7	5.5e-91
>prophage 2
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	1538077	1583948	4999314	terminase,tail,portal,protease,integrase,coat,lysis	Salmonella_phage(56.72%)	68	1528848:1528864	1592231:1592247
1528848:1528864	attL	GATATTGAAATTCGCGT	NA	NA	NA	NA
QAX40421.1|1538077_1539130_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
QAX40422.1|1539412_1540516_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAX40423.1|1540527_1541778_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
QAX43719.1|1541983_1542652_-|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	100.0	8.0e-129
QAX40424.1|1543023_1543374_-	DNA-binding protein	NA	A0A075B8K2	Enterobacteria_phage	99.1	1.1e-60
QAX43720.1|1543376_1544006_-	Eac protein	NA	A0A220NQT7	Salmonella_phage	96.7	7.3e-116
QAX40425.1|1544106_1544286_-	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
QAX40426.1|1544912_1545584_-	DUF550 domain-containing protein	NA	A0A220NQU1	Salmonella_phage	64.6	5.6e-90
QAX40427.1|1545587_1545806_-	DUF4014 domain-containing protein	NA	C6ZR28	Salmonella_phage	98.6	3.7e-35
QAX40428.1|1545807_1546713_-	ead/Ea22-like family protein	NA	A0A0M5M1J9	Salmonella_phage	95.4	5.3e-51
QAX40429.1|1546709_1547234_-	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	96.9	4.2e-48
QAX40430.1|1547230_1547401_-	DUF2737 family protein	NA	I6S642	Salmonella_phage	94.6	5.7e-23
QAX40431.1|1547411_1547705_-	DUF2856 family protein	NA	A0A1R3Y5T7	Salmonella_virus	100.0	3.2e-50
QAX40432.1|1547751_1548036_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
QAX40433.1|1548035_1548743_-	recombinase	NA	A0A1R3Y600	Salmonella_virus	98.7	2.9e-137
QAX40434.1|1548872_1549061_-	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QAX40435.1|1549041_1549215_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
QAX40436.1|1549534_1549822_-	hypothetical protein	NA	Q76H36	Enterobacteria_phage	97.9	1.1e-47
QAX40437.1|1549855_1550356_-	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	1.2e-31
QAX40438.1|1550548_1551136_+	superinfection exclusion protein B	NA	A0A0M4R594	Salmonella_phage	99.0	6.2e-85
QAX40439.1|1551148_1551451_-	regulator	NA	B8K1E6	Salmonella_phage	97.0	6.3e-49
QAX43721.1|1551802_1552465_-	LexA family transcriptional regulator	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
QAX40440.1|1552583_1552799_+	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
QAX40441.1|1552909_1553191_+	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
QAX40442.1|1553225_1553372_+	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
QAX40443.1|1553364_1554198_+	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	99.6	2.4e-151
QAX40444.1|1554194_1555571_+	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	99.3	4.8e-253
QAX40445.1|1555626_1556085_+	recombination protein NinB	NA	K7PKW7	Enterobacterial_phage	98.6	3.0e-79
QAX40446.1|1556081_1556954_+	hypothetical protein	NA	I6R0S6	Salmonella_phage	93.4	6.1e-169
QAX40447.1|1556950_1557124_+	protein ninD	NA	C6ZR56	Salmonella_phage	93.0	7.0e-29
QAX40448.1|1557090_1557267_+	NinE family protein	NA	A0A220NRK6	Escherichia_phage	98.3	7.9e-28
QAX40449.1|1557269_1557671_+	hypothetical protein	NA	G9L690	Escherichia_phage	85.7	2.7e-63
QAX40450.1|1557663_1557840_+	protein ninF	NA	A0A192Y808	Salmonella_phage	91.4	6.9e-24
QAX40451.1|1557832_1558069_+	hypothetical protein	NA	C6ZR59	Salmonella_phage	97.4	3.9e-38
QAX40452.1|1558049_1558520_+	hypothetical protein	NA	C6ZR60	Salmonella_phage	99.4	8.8e-90
QAX40453.1|1558507_1558690_+	hypothetical protein	NA	C6ZR61	Salmonella_phage	95.0	3.6e-23
QAX40454.1|1558686_1558929_+	hypothetical protein	NA	A0A1V0E5R3	Salmonella_phage	92.5	1.3e-36
QAX40455.1|1559086_1559860_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	96.5	1.2e-128
QAX40456.1|1560396_1560600_+	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QAX43722.1|1560577_1561075_+	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
QAX40457.1|1561071_1561539_+|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
QAX40458.1|1561573_1561798_+	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	88.7	3.6e-25
QAX40459.1|1561751_1562282_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	100.0	1.3e-94
QAX40460.1|1562504_1562747_+	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
QAX40461.1|1562750_1563140_+	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
QAX40462.1|1563139_1563544_+	Decoration protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
QAX40463.1|1563547_1564036_+	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
QAX40464.1|1564013_1565513_+|terminase	terminase	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
QAX40465.1|1565512_1567690_+|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
QAX40466.1|1567703_1568615_+	scaffolding protein	NA	Q5C834	Enterobacteria_phage	100.0	1.7e-161
QAX40467.1|1568614_1569907_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.5	1.2e-242
QAX40468.1|1569947_1570508_+	hypothetical protein	NA	E7C9T9	Salmonella_phage	100.0	1.3e-103
QAX40469.1|1570491_1570992_+	hypothetical protein	NA	E7C9U0	Salmonella_phage	100.0	2.5e-90
QAX40470.1|1570951_1572370_+	hypothetical protein	NA	A0A220NQZ5	Salmonella_phage	99.6	5.4e-276
QAX40471.1|1572373_1573075_+|tail	phage tail protein	tail	B8K1I3	Salmonella_phage	98.7	1.8e-70
QAX40472.1|1573074_1573530_+	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	100.0	1.4e-87
QAX40473.1|1573532_1574222_+	DNA transfer protein	NA	E7C9U4	Salmonella_phage	100.0	4.3e-109
QAX40474.1|1574232_1575516_+	acyltransferase	NA	E7C9U5	Salmonella_phage	94.7	4.5e-221
QAX40475.1|1575515_1577429_+	DNA transfer protein	NA	E7C9U6	Salmonella_phage	100.0	0.0e+00
QAX40476.1|1577446_1577776_-	hypothetical protein	NA	NA	NA	NA	NA
QAX40477.1|1577806_1578172_+	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
QAX43723.1|1578185_1578365_-	hypothetical protein	NA	B8K1I9	Salmonella_phage	100.0	2.1e-28
QAX40478.1|1578464_1578716_-	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	100.0	1.4e-38
QAX40479.1|1578851_1580855_+	endorhamnosidase	NA	E7C9U9	Salmonella_phage	100.0	0.0e+00
QAX40480.1|1580913_1582371_-	hypothetical protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
QAX40481.1|1582360_1583293_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
QAX40482.1|1583289_1583652_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
QAX40483.1|1583768_1583948_+	hypothetical protein	NA	M1E3P7	Enterobacteria_phage	92.3	4.3e-13
1592231:1592247	attR	GATATTGAAATTCGCGT	NA	NA	NA	NA
>prophage 3
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	2195703	2204435	4999314	transposase,protease	Dickeya_phage(14.29%)	10	NA	NA
QAX41038.1|2195703_2196822_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
QAX41039.1|2196818_2198765_+	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
QAX41040.1|2198745_2198940_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41041.1|2198894_2199116_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAX41042.1|2199439_2199760_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAX41043.1|2199790_2202067_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAX41044.1|2202119_2202302_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41045.1|2202258_2202717_+|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
QAX41046.1|2202889_2203165_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41047.1|2203179_2204435_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 4
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	2254498	2344307	4999314	terminase,tail,protease,transposase,holin,tRNA,lysis	Salmonella_phage(60.87%)	92	NA	NA
QAX41086.1|2254498_2255302_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
QAX41087.1|2255294_2256617_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
QAX41088.1|2256597_2257302_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
QAX41089.1|2257301_2261768_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
QAX41090.1|2262112_2263954_+	L,D-transpeptidase	NA	NA	NA	NA	NA
QAX41091.1|2264213_2264762_+	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
QAX41092.1|2264789_2265437_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QAX41093.1|2265498_2266689_-	aspartate aminotransferase	NA	NA	NA	NA	NA
QAX41094.1|2266873_2267965_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
QAX41095.1|2268571_2269972_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
QAX41096.1|2270172_2270634_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAX41097.1|2270630_2270864_-	hypothetical protein	NA	NA	NA	NA	NA
QAX41098.1|2270950_2272165_+	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
QAX41099.1|2272409_2273846_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAX41100.1|2273923_2275126_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAX41101.1|2275320_2276613_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
QAX41102.1|2276657_2276906_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAX41103.1|2276946_2277186_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX41104.1|2277228_2278386_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
QAX41105.1|2278348_2281549_-	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
QAX41106.1|2281675_2282026_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
QAX41107.1|2282074_2282206_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
QAX41108.1|2282502_2282937_-	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
QAX41109.1|2283042_2283270_+	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
QAX41110.1|2283304_2283625_+	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
QAX41111.1|2283709_2284693_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
QAX41112.1|2284695_2285445_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
QAX41113.1|2285455_2285803_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
QAX41114.1|2285799_2286258_+	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
QAX41115.1|2286261_2286570_+	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
QAX41116.1|2286573_2287218_+	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
QAX43752.1|2287217_2287475_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41117.1|2287529_2288507_-	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
QAX41118.1|2288518_2289115_-	hypothetical protein	NA	NA	NA	NA	NA
QAX41119.1|2289706_2289940_+	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
QAX41120.1|2290049_2290271_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41121.1|2290355_2290958_+	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
QAX41122.1|2290957_2291164_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.0e-34
QAX41123.1|2291166_2291778_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
QAX41124.1|2291774_2291915_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX41125.1|2291911_2292601_+	antiterminator	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
QAX41126.1|2292795_2292921_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41127.1|2293056_2293506_-	hypothetical protein	NA	NA	NA	NA	NA
QAX41128.1|2293866_2294553_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAX41129.1|2294785_2296059_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.0	1.2e-170
QAX43753.1|2296164_2296494_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
QAX41130.1|2296477_2296930_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
QAX43754.1|2296947_2297394_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
QAX41131.1|2297633_2297849_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41132.1|2297862_2298408_+|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
QAX41133.1|2299528_2299861_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
QAX41134.1|2299960_2300458_+	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAX41135.1|2300574_2301108_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAX41136.1|2301197_2301893_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAX41137.1|2301902_2302640_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAX41138.1|2302537_2303242_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
QAX41139.1|2306702_2306945_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41140.1|2306998_2309437_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
QAX41141.1|2309436_2310018_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAX41142.1|2310582_2311461_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.3	2.4e-173
QAX41143.1|2312108_2312735_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAX41144.1|2312803_2313103_-	hypothetical protein	NA	NA	NA	NA	NA
QAX41145.1|2313087_2313774_-	virulence protein	NA	NA	NA	NA	NA
QAX41146.1|2314044_2314236_-	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAX41147.1|2314662_2317275_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAX41148.1|2317482_2318493_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAX41149.1|2318658_2319201_+	cell division protein ZapC	NA	NA	NA	NA	NA
QAX41150.1|2319197_2320307_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAX41151.1|2320405_2322514_+	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAX41152.1|2322526_2324434_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
QAX41153.1|2324448_2325702_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QAX41154.1|2325706_2327347_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QAX41155.1|2327343_2327907_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QAX41156.1|2328162_2328330_+	ribosome modulation factor	NA	NA	NA	NA	NA
QAX41157.1|2328429_2328948_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAX41158.1|2329016_2330777_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAX41159.1|2330962_2331415_+	macrodomain Ter protein	NA	NA	NA	NA	NA
QAX41160.1|2331486_2332539_-	outer membrane protein A	NA	NA	NA	NA	NA
QAX41161.1|2332895_2333405_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAX41162.1|2333621_2334227_+	DNA transformation protein	NA	NA	NA	NA	NA
QAX41163.1|2334213_2336367_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAX41164.1|2336385_2336832_-	YccF domain-containing protein	NA	NA	NA	NA	NA
QAX41165.1|2337988_2338405_+	CoA-binding protein	NA	NA	NA	NA	NA
QAX41166.1|2338449_2338767_-	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAX41167.1|2338824_2340036_-	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAX41168.1|2340250_2340799_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAX41169.1|2340824_2341604_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAX41170.1|2341652_2341934_+	acylphosphatase	NA	NA	NA	NA	NA
QAX41171.1|2341930_2342260_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAX41172.1|2342346_2343006_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
QAX41173.1|2343071_2343281_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41174.1|2343626_2344307_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 5
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3131393	3138202	4999314	integrase,tail	Salmonella_phage(33.33%)	12	3126256:3126278	3135971:3135993
3126256:3126278	attL	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
QAX41950.1|3131393_3132275_-|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
QAX41951.1|3132747_3132936_+	hypothetical protein	NA	NA	NA	NA	NA
QAX41952.1|3133000_3133168_+	lytic enzyme	NA	NA	NA	NA	NA
QAX41953.1|3133424_3133958_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
QAX41954.1|3134011_3134242_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
QAX43791.1|3134431_3134926_+	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
QAX43789.1|3134985_3135840_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
QAX43790.1|3136036_3136156_-	hypothetical protein	NA	NA	NA	NA	NA
3135971:3135993	attR	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
QAX41955.1|3136213_3136567_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QAX41956.1|3136583_3137459_-	copper resistance D family protein	NA	NA	NA	NA	NA
QAX41957.1|3137459_3137834_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QAX41958.1|3137971_3138202_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 6
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3213652	3292933	4999314	plate,terminase,tail,portal,protease,head,transposase,holin,capsid,integrase	Salmonella_phage(76.47%)	106	3220190:3220205	3294556:3294571
QAX42034.1|3213652_3214111_-|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
QAX42035.1|3214291_3215497_-	lysine-N-methylase	NA	NA	NA	NA	NA
QAX42036.1|3215575_3217063_-	flagellin FliC	NA	NA	NA	NA	NA
QAX42037.1|3217319_3218723_+	flagellar hook-associated protein 2	NA	NA	NA	NA	NA
QAX42038.1|3218737_3219145_+	flagellar protein FliS	NA	NA	NA	NA	NA
QAX42039.1|3219144_3219513_+	flagellar protein FliT	NA	NA	NA	NA	NA
QAX42040.1|3219584_3221069_+	alpha-amylase	NA	NA	NA	NA	NA
3220190:3220205	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
QAX42041.1|3221108_3221534_-	lipoprotein	NA	NA	NA	NA	NA
QAX42042.1|3221659_3222925_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
QAX42043.1|3222921_3223155_+	SirA-like protein	NA	NA	NA	NA	NA
QAX42044.1|3223419_3223806_+	hypothetical protein	NA	NA	NA	NA	NA
QAX42045.1|3223925_3224240_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
QAX42046.1|3224456_3226139_+	flagellar M-ring protein	NA	NA	NA	NA	NA
QAX42047.1|3226131_3227127_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
QAX42048.1|3227119_3227827_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
QAX42049.1|3227826_3229197_+	flagellum-specific ATP synthase	NA	NA	NA	NA	NA
QAX42050.1|3229218_3229662_+	flagellar protein FliJ	NA	NA	NA	NA	NA
QAX42051.1|3229658_3230876_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
QAX42052.1|3230980_3231448_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
QAX42053.1|3231452_3232457_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
QAX42054.1|3232453_3232867_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
QAX42055.1|3232866_3233244_+	flagellar protein FliO	NA	NA	NA	NA	NA
QAX42056.1|3233243_3233981_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
QAX42057.1|3233990_3234260_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
QAX42058.1|3234268_3235063_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA	NA
QAX42059.1|3235344_3235968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
QAX42060.1|3236006_3236255_-	protein DsrB	NA	NA	NA	NA	NA
QAX42061.1|3236329_3236557_+	DUF2525 domain-containing protein	NA	NA	NA	NA	NA
QAX42062.1|3236866_3237682_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
QAX42063.1|3237660_3239373_-	cellulose synthesis regulatory protein	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
QAX42064.1|3239537_3239783_-	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
QAX42065.1|3239799_3240717_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
QAX42066.1|3240886_3241807_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
QAX42067.1|3241795_3242266_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
QAX42068.1|3242246_3243677_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
QAX42069.1|3243750_3244446_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QAX42070.1|3244537_3244837_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42071.1|3245486_3246683_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
QAX43795.1|3246943_3247132_-	cold-shock protein	NA	NA	NA	NA	NA
QAX42072.1|3247142_3247355_-	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAX42073.1|3247809_3249078_-	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAX42074.1|3249080_3249500_-	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAX42075.1|3249626_3249788_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42076.1|3249765_3250008_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42077.1|3250981_3251194_+	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
QAX42078.1|3251190_3251604_+	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
QAX42079.1|3251839_3252073_+	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
QAX42080.1|3252186_3252792_-|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
QAX42081.1|3252761_3254324_-|tail	phage tail protein	tail	A0A192Y7M1	Salmonella_phage	98.5	1.7e-283
QAX42082.1|3254310_3254898_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAX42083.1|3254900_3255980_-|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.2	7.2e-204
QAX42084.1|3255972_3256386_-	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	99.3	1.2e-74
QAX42085.1|3256390_3256924_-|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
QAX42086.1|3256923_3257982_-|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	3.0e-202
QAX42087.1|3257978_3259319_-	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.3	9.7e-251
QAX42088.1|3259378_3259828_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42089.1|3259844_3261770_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	97.3	0.0e+00
QAX42090.1|3261854_3262181_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAX42091.1|3262177_3262534_-|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	99.2	1.3e-61
QAX42092.1|3262533_3264030_-|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
QAX42093.1|3264019_3264184_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	94.4	7.1e-23
QAX42094.1|3264205_3264763_-	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	93.4	1.1e-96
QAX42095.1|3264759_3265272_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	87.6	1.6e-81
QAX42096.1|3265243_3265648_-|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	74.6	3.7e-52
QAX42097.1|3265644_3265968_-|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	97.2	2.4e-54
QAX42098.1|3265970_3266171_-	hypothetical protein	NA	S5FNU1	Shigella_phage	98.5	5.8e-27
QAX42099.1|3266220_3267426_-|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	98.0	9.4e-221
QAX42100.1|3267440_3268127_-|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	97.4	2.0e-122
QAX42101.1|3268068_3269310_-|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
QAX42102.1|3269309_3269492_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAX42103.1|3269503_3271237_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.3	0.0e+00
QAX42104.1|3271233_3271737_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
QAX42105.1|3271853_3272204_-	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
QAX43796.1|3272254_3272587_-	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
QAX42106.1|3273049_3273442_-	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
QAX42107.1|3273438_3274053_-	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
QAX42108.1|3274052_3274334_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
QAX42109.1|3274320_3274707_-	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
QAX43797.1|3274852_3275110_-	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
QAX42110.1|3275260_3276013_-	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
QAX43798.1|3276026_3277016_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	100.0	2.1e-194
QAX42111.1|3277023_3277929_-	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	100.0	1.1e-162
QAX42112.1|3277900_3278290_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	100.0	4.9e-70
QAX42113.1|3278298_3279174_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	99.0	1.0e-168
QAX42114.1|3279170_3279644_-	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	100.0	4.9e-56
QAX42115.1|3279640_3280615_-	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	100.0	2.3e-169
QAX42116.1|3280611_3280836_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAX42117.1|3280832_3281975_-	peptidase	NA	A0A1C9IHV9	Salmonella_phage	100.0	1.5e-212
QAX42118.1|3281971_3282526_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
QAX42119.1|3282554_3282779_-	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAX42120.1|3282717_3282903_-	amino acid permease	NA	NA	NA	NA	NA
QAX42121.1|3282876_3283572_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAX42122.1|3283777_3284116_+	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
QAX42123.1|3284078_3284495_-	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	6.4e-76
QAX42124.1|3284842_3285214_+	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
QAX42125.1|3285271_3286099_+	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
QAX42126.1|3286235_3286775_+	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAX42127.1|3286845_3287379_+	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
QAX42128.1|3287380_3287638_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
QAX42129.1|3287648_3288230_+	molecular chaperone DnaJ	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
QAX42130.1|3288233_3288803_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAX42131.1|3288827_3289070_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAX42132.1|3289071_3290061_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAX42133.1|3290352_3291150_+	protein MtfA	NA	NA	NA	NA	NA
QAX42134.1|3291521_3291812_+	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
QAX42135.1|3292459_3292933_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
3294556:3294571	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 7
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3378929	3389435	4999314		Enterobacteria_phage(37.5%)	10	NA	NA
QAX42218.1|3378929_3380243_-	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
QAX42219.1|3380269_3381349_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAX42220.1|3381353_3382127_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAX42221.1|3382123_3383116_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAX42222.1|3383121_3383673_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
QAX43803.1|3383673_3384552_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
QAX42223.1|3384599_3385499_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
QAX42224.1|3385498_3386584_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAX42225.1|3386960_3387854_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAX42226.1|3388031_3389435_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 8
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3457744	3466915	4999314	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAX42281.1|3457744_3459778_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
QAX42282.1|3460018_3460477_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAX42283.1|3460648_3461179_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAX42284.1|3461235_3461703_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAX42285.1|3461749_3462469_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QAX42286.1|3462465_3464151_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
QAX42287.1|3464373_3465105_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAX42288.1|3465164_3465272_+	protein YohO	NA	NA	NA	NA	NA
QAX42289.1|3465252_3465984_-	ABC transporter permease	NA	NA	NA	NA	NA
QAX42290.1|3465967_3466915_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 9
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3538967	3548881	4999314	tail,holin	Salmonella_phage(37.5%)	8	NA	NA
QAX43807.1|3538967_3539471_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
QAX42359.1|3540463_3540991_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
QAX42360.1|3540993_3542235_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
QAX42361.1|3542827_3543157_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
QAX42362.1|3543453_3544785_+	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
QAX42363.1|3544813_3545182_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
QAX43808.1|3545196_3546186_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.0	2.3e-188
QAX42364.1|3546514_3548881_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
>prophage 10
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	3889929	3990051	4999314	terminase,tail,portal,protease,head,transposase,holin,capsid,integrase,tRNA,lysis	Salmonella_phage(41.27%)	111	3923529:3923544	3946514:3946529
QAX42672.1|3889929_3890661_-|tRNA	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
QAX42673.1|3890779_3891583_+	inositol monophosphatase	NA	NA	NA	NA	NA
QAX42674.1|3891727_3892606_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
QAX42675.1|3892787_3893831_+	sulfite reductase subunit alpha	NA	NA	NA	NA	NA
QAX42676.1|3893834_3894653_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
QAX42677.1|3894663_3895677_+	anaerobic sulfite reductase subunit AsrC	NA	NA	NA	NA	NA
QAX42678.1|3895677_3896664_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
QAX43818.1|3896654_3897293_-	DUF1007 family protein	NA	NA	NA	NA	NA
QAX42679.1|3897418_3898696_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
QAX42680.1|3898690_3899830_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
QAX42681.1|3900025_3901279_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
QAX42682.1|3901603_3902794_+	flavohemoprotein	NA	NA	NA	NA	NA
QAX42683.1|3902975_3904520_+	transcriptional regulator CadC	NA	NA	NA	NA	NA
QAX42684.1|3904880_3906212_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
QAX42685.1|3906294_3908439_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
QAX42686.1|3908494_3909955_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
QAX42687.1|3910003_3910342_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
QAX42688.1|3910418_3911756_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
QAX42689.1|3911752_3912517_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
QAX42690.1|3912518_3913904_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	1.9e-15
QAX42691.1|3914598_3918486_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
QAX42692.1|3918507_3918741_+	hypothetical protein	NA	NA	NA	NA	NA
QAX42693.1|3918741_3920286_+	lytic transglycosylase F	NA	NA	NA	NA	NA
QAX42694.1|3920336_3920888_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
QAX42695.1|3920912_3921548_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAX42696.1|3921551_3922913_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAX42697.1|3922923_3923817_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
3923529:3923544	attL	CGACGACCAGACCGTG	NA	NA	NA	NA
QAX42698.1|3923932_3924781_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAX42699.1|3924819_3925737_-	oxidoreductase	NA	NA	NA	NA	NA
QAX42700.1|3925758_3926955_-	MFS transporter	NA	NA	NA	NA	NA
QAX42701.1|3927070_3927997_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAX42702.1|3928034_3928295_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
QAX42703.1|3928406_3928787_-	holo-ACP synthase	NA	NA	NA	NA	NA
QAX42704.1|3928786_3929518_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAX42705.1|3929529_3930258_-	DNA repair protein RecO	NA	NA	NA	NA	NA
QAX42706.1|3930269_3931175_-	GTPase Era	NA	NA	NA	NA	NA
QAX43819.1|3931171_3931852_-	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAX42707.1|3932125_3933100_-	S26 family signal peptidase	NA	NA	NA	NA	NA
QAX42708.1|3933116_3934916_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAX42709.1|3935320_3936814_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAX42710.1|3937292_3937430_+	hypothetical protein	NA	NA	NA	NA	NA
QAX42711.1|3937676_3938222_+|transposase	transposase	transposase	NA	NA	NA	NA
QAX42712.1|3938142_3938307_-|integrase	integrase	integrase	NA	NA	NA	NA
QAX43820.1|3938886_3938952_-	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
QAX42713.1|3939014_3939227_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAX42714.1|3939333_3939561_+	phage virulence factor	NA	NA	NA	NA	NA
QAX42715.1|3939657_3940236_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAX42716.1|3940225_3941050_-|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAX42717.1|3941046_3943419_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAX42718.1|3943472_3943715_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42719.1|3943753_3947116_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
3946514:3946529	attR	CGACGACCAGACCGTG	NA	NA	NA	NA
QAX42720.1|3947177_3947825_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAX42721.1|3947722_3948460_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAX42722.1|3948466_3949165_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAX42723.1|3949174_3949504_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAX42724.1|3949506_3952602_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
QAX42725.1|3952573_3952912_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAX42726.1|3952908_3953304_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAX42727.1|3953354_3954101_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.5	1.9e-99
QAX42728.1|3954108_3954510_-|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAX42729.1|3954618_3955749_+|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
QAX42730.1|3955797_3956376_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAX42731.1|3956403_3956787_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAX42732.1|3956797_3957157_-	DNA packaging protein	NA	NA	NA	NA	NA
QAX42733.1|3957214_3958243_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAX42734.1|3958297_3958645_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAX42735.1|3958657_3960154_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAX42736.1|3960143_3961724_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAX42737.1|3961720_3961924_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAX42738.1|3961907_3963839_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAX42739.1|3963810_3964347_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.7	1.0e-54
QAX42740.1|3964643_3965045_+	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAX43821.1|3965280_3965733_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAX42741.1|3965750_3966203_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
QAX43822.1|3966186_3966516_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAX42742.1|3966791_3967478_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAX42743.1|3967692_3967881_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42744.1|3968387_3968951_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAX42745.1|3969041_3969227_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42746.1|3969223_3969901_-	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAX42747.1|3969897_3970038_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX42748.1|3970034_3970646_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAX42749.1|3970648_3970855_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAX42750.1|3970854_3971457_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	1.1e-108
QAX42751.1|3971496_3971802_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
QAX42752.1|3971791_3972031_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	1.1e-37
QAX42753.1|3972222_3972504_-	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	92.5	1.4e-47
QAX42754.1|3972895_3973369_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
QAX42755.1|3973368_3973893_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
QAX42756.1|3973889_3974237_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
QAX42757.1|3974247_3974997_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAX42758.1|3974999_3975983_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAX42759.1|3976067_3976442_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAX42760.1|3976407_3976644_-	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
QAX42761.1|3976773_3977178_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
QAX42762.1|3977576_3977735_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAX42763.1|3977756_3978107_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAX42764.1|3978233_3981161_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAX42765.1|3981123_3982281_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAX42766.1|3982323_3982563_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX42767.1|3982603_3982888_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAX42768.1|3982865_3984095_-	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAX42769.1|3984446_3984563_-	transcriptional regulator	NA	NA	NA	NA	NA
QAX42770.1|3984592_3985072_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QAX42771.1|3985068_3986025_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAX42772.1|3986024_3986675_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAX42773.1|3986706_3987282_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAX42774.1|3987278_3987443_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
QAX42775.1|3987442_3987622_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42776.1|3987706_3989329_+	L-aspartate oxidase	NA	NA	NA	NA	NA
QAX42777.1|3989313_3990051_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 11
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	4036495	4100453	4999314	integrase,tRNA,transposase	Escherichia_phage(33.33%)	52	4073542:4073556	4102042:4102056
QAX42803.1|4036495_4037371_-|integrase	integrase	integrase	NA	NA	NA	NA
QAX42804.1|4038305_4038488_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42805.1|4038487_4040167_-	SgrR family transcriptional regulator	NA	NA	NA	NA	NA
QAX42806.1|4040389_4041931_+	PTS glucose transporter subunit IIABC	NA	NA	NA	NA	NA
QAX42807.1|4042060_4042903_+	cytoplasmic protein	NA	NA	NA	NA	NA
QAX42808.1|4042899_4043466_+	6-phospho-3-hexuloisomerase	NA	NA	NA	NA	NA
QAX42809.1|4043489_4044125_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
QAX42810.1|4044198_4045401_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
QAX42811.1|4045695_4046709_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
QAX42812.1|4046719_4047700_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
QAX42813.1|4047696_4048071_-	PTS sorbitol transporter	NA	NA	NA	NA	NA
QAX42814.1|4048067_4048589_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
QAX42815.1|4048701_4048986_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	64.7	5.4e-18
QAX42816.1|4049080_4049437_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAX43826.1|4049590_4050409_-	DUF4435 domain-containing protein	NA	NA	NA	NA	NA
QAX42817.1|4050453_4051737_-	ATPase	NA	NA	NA	NA	NA
QAX42818.1|4052157_4054227_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	35.1	1.7e-73
QAX42819.1|4054262_4054478_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
QAX42820.1|4054928_4055756_+	hypothetical protein	NA	NA	NA	NA	NA
QAX42821.1|4056090_4057284_-	hypothetical protein	NA	NA	NA	NA	NA
QAX43827.1|4057673_4058267_-	hypothetical protein	NA	NA	NA	NA	NA
QAX43828.1|4060159_4061323_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
QAX42822.1|4061330_4063511_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
QAX42823.1|4063507_4064917_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QAX42824.1|4064981_4076456_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
4073542:4073556	attL	ACTTCGACACGCGCG	NA	NA	NA	NA
QAX43829.1|4077069_4077552_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QAX42825.1|4077701_4078178_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
QAX42826.1|4078167_4078458_+	RnfH family protein	NA	NA	NA	NA	NA
QAX42827.1|4078623_4078962_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QAX42828.1|4079110_4080772_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QAX42829.1|4080857_4081736_-	NAD(+) kinase	NA	NA	NA	NA	NA
QAX43830.1|4081667_4081862_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QAX42830.1|4081858_4082449_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QAX42831.1|4082483_4083089_-	cytoplasmic protein	NA	NA	NA	NA	NA
QAX42832.1|4083209_4084451_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
QAX42833.1|4084515_4085307_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QAX42834.1|4085252_4085549_-	hypothetical protein	NA	NA	NA	NA	NA
QAX42835.1|4085472_4086834_+	signal recognition particle protein	NA	NA	NA	NA	NA
QAX43831.1|4087147_4087396_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QAX42836.1|4087414_4087963_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QAX42837.1|4088007_4088775_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QAX42838.1|4088815_4089163_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
QAX42839.1|4090454_4091159_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX42840.1|4091743_4092604_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QAX42841.1|4092753_4093155_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAX42842.1|4093201_4093906_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX42843.1|4094662_4095514_+	replication protein	NA	NA	NA	NA	NA
QAX42844.1|4095821_4096637_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
QAX42845.1|4096697_4097501_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	4.9e-24
QAX42846.1|4097500_4098337_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QAX42847.1|4098397_4099102_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX42848.1|4099148_4100453_-|integrase	integrase	integrase	NA	NA	NA	NA
4102042:4102056	attR	CGCGCGTGTCGAAGT	NA	NA	NA	NA
>prophage 12
CP033352	Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome	4999314	4579739	4626784	4999314	plate,tRNA,tail	Burkholderia_phage(40.91%)	50	NA	NA
QAX43287.1|4579739_4580738_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAX43288.1|4580825_4582136_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAX43289.1|4582382_4582898_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAX43290.1|4582996_4583206_-	CsbD family protein	NA	NA	NA	NA	NA
QAX43853.1|4583227_4583341_-	hypothetical protein	NA	NA	NA	NA	NA
QAX43291.1|4583337_4584663_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
QAX43292.1|4584841_4585450_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAX43293.1|4585558_4585927_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAX43294.1|4586097_4588518_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAX43295.1|4588616_4589489_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAX43296.1|4589502_4590000_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAX43297.1|4590180_4591098_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAX43298.1|4591261_4592620_-	maltoporin	NA	NA	NA	NA	NA
QAX43299.1|4592708_4593818_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAX43300.1|4594179_4595370_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAX43301.1|4595501_4597046_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAX43302.1|4597060_4597951_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAX43303.1|4598116_4598527_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAX43304.1|4598669_4600766_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAX43305.1|4600765_4601503_-	hypothetical protein	NA	NA	NA	NA	NA
QAX43306.1|4601499_4602138_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAX43307.1|4602201_4602444_-	outer membrane protein	NA	NA	NA	NA	NA
QAX43308.1|4602887_4604537_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAX43309.1|4604881_4606231_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAX43310.1|4606363_4606711_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAX43854.1|4607254_4607575_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.5	5.2e-17
QAX43311.1|4607577_4608183_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAX43312.1|4608195_4608510_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAX43313.1|4608669_4609125_+	hypothetical protein	NA	NA	NA	NA	NA
QAX43314.1|4609121_4609319_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAX43315.1|4609308_4610736_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAX43316.1|4610735_4611260_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAX43317.1|4611311_4611629_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAX43318.1|4611588_4611717_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAX43319.1|4611813_4614168_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
QAX43320.1|4614167_4615121_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAX43321.1|4615120_4615330_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAX43322.1|4615317_4616361_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
QAX43323.1|4616370_4617093_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
QAX43324.1|4617420_4617783_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAX43325.1|4617779_4618709_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
QAX43326.1|4618708_4620256_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
QAX43327.1|4620419_4620779_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAX43328.1|4620769_4621885_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
QAX43329.1|4621877_4622510_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAX43330.1|4622512_4624258_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
QAX43331.1|4624262_4624868_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
QAX43332.1|4624864_4625320_+	hypothetical protein	NA	NA	NA	NA	NA
QAX43333.1|4625568_4625859_+	hypothetical protein	NA	NA	NA	NA	NA
QAX43334.1|4626055_4626784_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
