assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004135775.1_ASM413577v1	CP034399	Escherichia coli strain CRE1 chromosome, complete genome	1	1091211-1091912	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|254aa|up_9|CP034399.1_1083023_1083785_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP034399.1_1083765_1084815_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP034399.1_1084811_1085291_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP034399.1_1085290_1086001_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP034399.1_1086019_1086331_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP034399.1_1086524_1086848_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP034399.1_1086897_1087503_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP034399.1_1087502_1088930_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP034399.1_1088931_1089840_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP034399.1_1090091_1091129_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP034399.1_1092008_1092302_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP034399.1_1092301_1093222_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP034399.1_1093218_1093869_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP034399.1_1093850_1094597_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP034399.1_1094607_1095663_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP034399.1_1095674_1096211_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|CP034399.1_1096207_1097770_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|CP034399.1_1097867_1100567_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|CP034399.1_1100761_1100914_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP034399.1_1101178_1101913_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_004135775.1_ASM413577v1	CP034399	Escherichia coli strain CRE1 chromosome, complete genome	2	1107412-1107989	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|121aa|down_3|CP034399.1_1110729_1111092_+	cas7|352aa|up_9|CP034399.1_1094607_1095663_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|CP034399.1_1095674_1096211_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|up_7|CP034399.1_1096207_1097770_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|CP034399.1_1097867_1100567_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|CP034399.1_1100761_1100914_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|CP034399.1_1101178_1101913_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|CP034399.1_1101986_1103699_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|CP034399.1_1103698_1105498_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|CP034399.1_1105813_1106179_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|CP034399.1_1106218_1106773_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP034399.1_1108328_1109000_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|CP034399.1_1109172_1109775_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|CP034399.1_1109788_1110694_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|CP034399.1_1110729_1111092_+	NA	NA|433aa|down_4|CP034399.1_1111147_1112446_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|CP034399.1_1112533_1114171_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|CP034399.1_1114398_1115190_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|CP034399.1_1115260_1115596_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|CP034399.1_1115595_1115844_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|CP034399.1_1115921_1118156_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCA_004135775.1_ASM413577v1	CP034399	Escherichia coli strain CRE1 chromosome, complete genome	3	2828971-2829117	3	CRISPRCasFinder	no		c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TCTGTGTCGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAACA	49	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	NA|193aa|up_7|CP034399.1_2820340_2820919_+,NA|310aa|up_6|CP034399.1_2821009_2821939_+,NA|84aa|down_9|CP034399.1_2840815_2841067_+	NA|198aa|up_9|CP034399.1_2819027_2819621_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|CP034399.1_2819765_2820218_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|193aa|up_7|CP034399.1_2820340_2820919_+	NA	NA|310aa|up_6|CP034399.1_2821009_2821939_+	NA	NA|335aa|up_5|CP034399.1_2821996_2823001_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP034399.1_2823162_2823579_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP034399.1_2823625_2824129_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP034399.1_2824321_2825518_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP034399.1_2825571_2828427_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP034399.1_2828426_2828870_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP034399.1_2829130_2830642_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|361aa|down_1|CP034399.1_2832007_2833090_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_2|CP034399.1_2833250_2834753_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_3|CP034399.1_2834830_2835829_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_4|CP034399.1_2835895_2837215_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_5|CP034399.1_2837279_2838044_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_6|CP034399.1_2838067_2839099_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_7|CP034399.1_2839315_2839879_+	PRK09825, idnK, gluconokinase	NA|340aa|down_8|CP034399.1_2839882_2840902_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|84aa|down_9|CP034399.1_2840815_2841067_+	NA
GCA_004135775.1_ASM413577v1	CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4	4013368-4014175	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	11,13,13	13	TypeI-F	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|551aa|up_9|CP034399.1_3999776_4001429_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|CP034399.1_4001572_4002472_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|CP034399.1_4002966_4003662_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|CP034399.1_4004087_4005746_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|CP034399.1_4005742_4006735_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|CP034399.1_4006849_4007965_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|CP034399.1_4007961_4009908_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|CP034399.1_4009980_4010205_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|CP034399.1_4010527_4010848_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|CP034399.1_4010878_4013155_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|CP034399.1_4014347_4015331_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|CP034399.1_4015327_4018561_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|CP034399.1_4018891_4020199_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_3|CP034399.1_4020195_4021119_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|CP034399.1_4021129_4022131_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|CP034399.1_4022141_4022696_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|CP034399.1_4024458_4024677_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|CP034399.1_4024961_4025666_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|CP034399.1_4025707_4027429_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|CP034399.1_4027429_4029196_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCA_004135775.1_ASM413577v1	CP034399	Escherichia coli strain CRE1 chromosome, complete genome	5	4023239-4024346	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	17,18,18	18	TypeI-F	c2c9_V-U4,DinG,DEDDh,RT,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|649aa|up_9|CP034399.1_4007961_4009908_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_8|CP034399.1_4009980_4010205_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_7|CP034399.1_4010527_4010848_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_6|CP034399.1_4010878_4013155_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_5|CP034399.1_4014347_4015331_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_4|CP034399.1_4015327_4018561_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_3|CP034399.1_4018891_4020199_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|up_2|CP034399.1_4020195_4021119_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|CP034399.1_4021129_4022131_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|CP034399.1_4022141_4022696_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|CP034399.1_4024458_4024677_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|CP034399.1_4024961_4025666_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|CP034399.1_4025707_4027429_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|CP034399.1_4027429_4029196_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|CP034399.1_4029318_4030284_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|CP034399.1_4030828_4031323_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1356aa|down_6|CP034399.1_4031457_4035525_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|CP034399.1_4035679_4036291_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|CP034399.1_4036301_4037645_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|CP034399.1_4037735_4039028_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
