assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004135815.1_ASM413581v1	CP034404	Escherichia coli strain CRE10 chromosome, complete genome	1	204400-205207	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas8f,cas5f,cas7f,cas6f	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,13,13	13	TypeI-F	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|323aa|up_9|CP034404.1_189827_190796_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|300aa|up_8|CP034404.1_192604_193504_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|CP034404.1_193998_194694_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|CP034404.1_195119_196778_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|CP034404.1_196774_197767_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|CP034404.1_197881_198997_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|CP034404.1_198993_200940_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|CP034404.1_201012_201237_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|CP034404.1_201559_201880_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|CP034404.1_201910_204187_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|CP034404.1_205379_206363_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas8f|436aa|down_1|CP034404.1_209919_211227_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_2|CP034404.1_211223_212147_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_3|CP034404.1_212157_213159_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|CP034404.1_213169_213724_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|CP034404.1_215486_215705_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|CP034404.1_215989_216694_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|CP034404.1_216735_218457_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|CP034404.1_218457_220224_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|165aa|down_9|CP034404.1_221857_222352_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp
GCA_004135815.1_ASM413581v1	CP034404	Escherichia coli strain CRE10 chromosome, complete genome	2	214267-215374	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas8f,cas5f,cas7f,cas6f	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	17,18,18	18	TypeI-F	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|372aa|up_9|CP034404.1_197881_198997_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|CP034404.1_198993_200940_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|CP034404.1_201012_201237_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|CP034404.1_201559_201880_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|CP034404.1_201910_204187_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|CP034404.1_205379_206363_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas8f|436aa|up_3|CP034404.1_209919_211227_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|up_2|CP034404.1_211223_212147_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|CP034404.1_212157_213159_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|CP034404.1_213169_213724_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|CP034404.1_215486_215705_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|CP034404.1_215989_216694_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|CP034404.1_216735_218457_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|CP034404.1_218457_220224_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|165aa|down_4|CP034404.1_221857_222352_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|204aa|down_5|CP034404.1_226890_227502_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_6|CP034404.1_227512_228856_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_7|CP034404.1_228946_230239_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|815aa|down_8|CP034404.1_230477_232922_+	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional	NA|206aa|down_9|CP034404.1_232932_233550_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit
GCA_004135815.1_ASM413581v1	CP034404	Escherichia coli strain CRE10 chromosome, complete genome	3	2213222-2213984	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,11,11	12	TypeI-E	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|331aa|up_9|CP034404.1_2202133_2203126_-	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|380aa|up_8|CP034404.1_2203188_2204328_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|156aa|up_7|CP034404.1_2206895_2207363_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP034404.1_2207362_2208073_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP034404.1_2208091_2208403_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP034404.1_2208596_2208920_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP034404.1_2208969_2209575_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP034404.1_2209574_2211002_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP034404.1_2211003_2211912_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP034404.1_2212163_2213201_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP034404.1_2214080_2214374_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP034404.1_2214373_2215294_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP034404.1_2215290_2215941_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP034404.1_2215922_2216669_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP034404.1_2216679_2217735_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP034404.1_2217746_2218283_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|CP034404.1_2218279_2219842_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|CP034404.1_2219939_2222639_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|CP034404.1_2222833_2222986_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP034404.1_2223250_2223985_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_004135815.1_ASM413581v1	CP034404	Escherichia coli strain CRE10 chromosome, complete genome	4	2229484-2230061	4,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|121aa|down_3|CP034404.1_2232801_2233164_+	cas7|352aa|up_9|CP034404.1_2216679_2217735_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|CP034404.1_2217746_2218283_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|up_7|CP034404.1_2218279_2219842_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|CP034404.1_2219939_2222639_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|CP034404.1_2222833_2222986_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|CP034404.1_2223250_2223985_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|CP034404.1_2224058_2225771_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|CP034404.1_2225770_2227570_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|CP034404.1_2227885_2228251_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|CP034404.1_2228290_2228845_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP034404.1_2230400_2231072_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|CP034404.1_2231244_2231847_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|CP034404.1_2231860_2232766_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|CP034404.1_2232801_2233164_+	NA	NA|433aa|down_4|CP034404.1_2233219_2234518_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|CP034404.1_2234605_2236243_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|CP034404.1_2236470_2237262_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|CP034404.1_2237332_2237668_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|CP034404.1_2237667_2237916_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|CP034404.1_2237993_2240228_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCA_004135815.1_ASM413581v1	CP034404	Escherichia coli strain CRE10 chromosome, complete genome	5	3951133-3951279	5	CRISPRCasFinder	no		DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TCTGTGTCGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAACA	49	0	0	NA	NA	NA	1	1	Orphan	DinG,cas1,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA|193aa|up_7|CP034404.1_3942502_3943081_+,NA|310aa|up_6|CP034404.1_3943171_3944101_+,NA|84aa|down_9|CP034404.1_3962986_3963238_+	NA|198aa|up_9|CP034404.1_3941189_3941783_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|CP034404.1_3941927_3942380_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|193aa|up_7|CP034404.1_3942502_3943081_+	NA	NA|310aa|up_6|CP034404.1_3943171_3944101_+	NA	NA|335aa|up_5|CP034404.1_3944158_3945163_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP034404.1_3945324_3945741_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP034404.1_3945787_3946291_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP034404.1_3946483_3947680_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP034404.1_3947733_3950589_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP034404.1_3950588_3951032_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP034404.1_3951292_3952804_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP034404.1_3953070_3954171_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP034404.1_3954170_3955253_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP034404.1_3955413_3956916_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|CP034404.1_3956993_3957992_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|CP034404.1_3958058_3959378_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|CP034404.1_3959442_3960207_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|188aa|down_7|CP034404.1_3961486_3962050_+	PRK09825, idnK, gluconokinase	NA|340aa|down_8|CP034404.1_3962053_3963073_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|84aa|down_9|CP034404.1_3962986_3963238_+	NA
