The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	1166356	1312314	4884276	lysis,portal,tRNA,integrase,capsid,terminase,holin,protease,transposase,head,tail	Salmonella_phage(27.17%)	153	1194428:1194444	1281581:1281597
QAY98526.1|1166356_1167550_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	2.6e-106
QAZ02037.1|1168168_1169332_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
QAY98527.1|1169339_1171520_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
QAY98528.1|1171516_1172926_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QAY98529.1|1172990_1184465_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
QAZ02038.1|1185079_1185562_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QAY98530.1|1185711_1186188_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
QAY98531.1|1186177_1186468_+	RnfH family protein	NA	NA	NA	NA	NA
QAY98532.1|1186633_1186972_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QAY98533.1|1187120_1188782_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QAY98534.1|1188867_1189746_-	NAD(+) kinase	NA	NA	NA	NA	NA
QAZ02039.1|1189677_1189872_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QAY98535.1|1189868_1190459_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QAY98536.1|1190493_1191099_-	cytoplasmic protein	NA	NA	NA	NA	NA
QAY98537.1|1191219_1192461_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
QAY98538.1|1192525_1193317_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QAY98539.1|1193262_1193559_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98540.1|1193482_1194844_+	signal recognition particle protein	NA	NA	NA	NA	NA
1194428:1194444	attL	GCTGAGAAGCTGGCGAC	NA	NA	NA	NA
QAY98541.1|1195187_1195436_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QAZ02040.1|1195454_1196003_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QAY98542.1|1196047_1196815_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QAY98543.1|1196855_1197203_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
QAY98544.1|1197359_1198580_-	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
QAY98545.1|1198572_1199091_-	DUF4154 domain-containing protein	NA	NA	NA	NA	NA
QAY98546.1|1199530_1200601_+	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
QAY98547.1|1200610_1201732_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
QAY98548.1|1201789_1202698_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
QAY98549.1|1202658_1203819_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
QAZ02041.1|1203918_1203966_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98550.1|1204129_1205149_-|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.2	1.4e-108
QAY98551.1|1205188_1205494_-	XRE family transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	47.5	1.6e-15
QAY98552.1|1205591_1205930_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98553.1|1205955_1206288_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98554.1|1206297_1206867_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	47.4	6.8e-44
QAY98555.1|1206869_1207088_+	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	43.3	4.7e-06
QAY98556.1|1207127_1209782_+	bifunctional DNA primase/helicase	NA	A0A077K8T2	Ralstonia_phage	46.5	3.6e-241
QAY98557.1|1209919_1210882_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98558.1|1210948_1211272_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	73.1	1.3e-36
QAY98559.1|1211271_1212291_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.1	1.1e-134
QAY98560.1|1212287_1214072_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	69.7	2.3e-247
QAY98561.1|1214129_1215122_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	52.0	4.3e-46
QAY98562.1|1215156_1216185_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	1.7e-133
QAY98563.1|1216196_1216895_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	53.0	2.1e-63
QAY98564.1|1216913_1217105_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98565.1|1217198_1217651_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	64.7	1.2e-48
QAY98566.1|1217647_1218130_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	3.0e-37
QAY98567.1|1218126_1218831_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.9	1.8e-70
QAY98568.1|1218827_1219955_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	4.3e-175
QAY98569.1|1219951_1220407_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	71.5	1.7e-58
QAY98570.1|1220419_1220716_+|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
QAY98571.1|1220712_1221054_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAY98572.1|1221053_1221386_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	69.1	2.8e-34
QAY98573.1|1221312_1221546_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	81.8	8.6e-30
QAY98574.1|1221523_1221790_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	2.4e-20
QAY98575.1|1221977_1223945_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.5	7.3e-271
QAY98576.1|1223941_1224271_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAY98577.1|1224267_1225452_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAY98578.1|1225438_1226032_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	81.5	1.9e-89
QAY98579.1|1226041_1228273_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.3	2.4e-177
QAY98580.1|1228284_1228800_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	82.1	3.6e-76
QAY98581.1|1228789_1229515_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
QAY98582.1|1229486_1230032_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.5	5.5e-59
QAY98583.1|1230034_1231735_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	3.2e-222
QAY98584.1|1231633_1231987_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98585.1|1232768_1233155_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98586.1|1233312_1233651_-	ribosomal subunit interface protein	NA	NA	NA	NA	NA
QAY98587.1|1233922_1234660_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
QAY98588.1|1234791_1235772_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
QAY98589.1|1235768_1236500_+	laccase domain-containing protein	NA	NA	NA	NA	NA
QAY98590.1|1236629_1239203_+	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
QAY98591.1|1244865_1245096_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98592.1|1245112_1245568_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.0e-34
QAY98593.1|1245671_1246973_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.4	9.1e-44
QAY98594.1|1246969_1247293_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98595.1|1247337_1248693_-	phosphatidylserine synthase	NA	NA	NA	NA	NA
QAY98596.1|1248807_1251468_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA	NA
QAY98597.1|1251521_1252202_-	DTW domain-containing protein	NA	NA	NA	NA	NA
QAY98598.1|1252274_1252694_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
QAY98599.1|1252897_1253935_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAY98600.1|1254050_1254740_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAY98601.1|1255058_1255442_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAY98602.1|1255503_1256091_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAZ02042.1|1256193_1257093_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAY98603.1|1257110_1258445_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAY98604.1|1258574_1259312_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QAY98605.1|1259296_1260919_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAY98606.1|1261003_1261183_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98607.1|1261343_1261919_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAY98608.1|1261950_1262601_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAY98609.1|1262600_1263557_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAY98610.1|1263553_1264033_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QAY98611.1|1264529_1265759_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAY98612.1|1265736_1266021_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAY98613.1|1266061_1266301_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAY98614.1|1266343_1267501_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAY98615.1|1267463_1270391_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAY98616.1|1270517_1270868_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAY98617.1|1270889_1271048_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAY98618.1|1271504_1272167_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98619.1|1272166_1272553_-	hypothetical protein	NA	NA	NA	NA	NA
QAY98620.1|1272545_1273385_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAY98621.1|1273443_1273839_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAY98622.1|1273938_1274181_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAY98623.1|1274140_1274515_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QAY98624.1|1274606_1275515_+	replication protein	NA	K7PGT1	Enterobacteria_phage	45.9	1.2e-45
QAY98625.1|1275511_1276207_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAY98626.1|1276220_1276919_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAY98627.1|1277026_1277659_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98628.1|1277901_1278135_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAY98629.1|1278251_1278500_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAY98630.1|1278534_1279137_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAY98631.1|1279136_1279343_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAY98632.1|1279345_1279957_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAY98633.1|1279953_1280094_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAY98634.1|1280090_1280768_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAY98635.1|1280764_1280950_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98636.1|1281040_1281604_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
1281581:1281597	attR	GCTGAGAAGCTGGCGAC	NA	NA	NA	NA
QAY98637.1|1282110_1282299_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98638.1|1282513_1283200_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAZ02043.1|1283475_1283805_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAY98639.1|1283788_1284241_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAZ02044.1|1284258_1284711_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAY98640.1|1284946_1285348_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAY98641.1|1285382_1285577_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98642.1|1285634_1286180_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAY98643.1|1286151_1288083_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAY98644.1|1288066_1288270_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAY98645.1|1288266_1289847_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAY98646.1|1289836_1291333_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAY98647.1|1291345_1291693_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAY98648.1|1291747_1292776_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAY98649.1|1292833_1293193_+	DNA packaging protein	NA	NA	NA	NA	NA
QAY98650.1|1293203_1293587_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAY98651.1|1293614_1294193_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAY98652.1|1294241_1295492_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QAY98653.1|1295480_1295882_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAY98654.1|1295889_1296636_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAY98655.1|1296686_1297082_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAY98656.1|1297078_1297417_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAY98657.1|1297388_1300484_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
QAY98658.1|1300486_1300816_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAY98659.1|1300825_1301524_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAY98660.1|1301530_1302268_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAY98661.1|1302165_1302813_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAY98662.1|1302874_1306237_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAY98663.1|1306275_1306518_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98664.1|1306571_1308944_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAY98665.1|1308940_1309765_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAY98666.1|1309754_1310333_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAY98667.1|1310429_1310657_-	phage virulence factor	NA	NA	NA	NA	NA
QAY98668.1|1310763_1310976_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAZ02045.1|1311038_1311104_+	hypothetical protein	NA	NA	NA	NA	NA
QAY98669.1|1311768_1312314_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	1776763	1785934	4884276	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAY99081.1|1776763_1777711_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
QAY99082.1|1777694_1778426_+	ABC transporter permease	NA	NA	NA	NA	NA
QAY99083.1|1778406_1778514_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99084.1|1778573_1779305_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.4	1.0e-100
QAY99085.1|1779527_1781213_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QAY99086.1|1781209_1781929_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAY99087.1|1781975_1782443_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAY99088.1|1782499_1783030_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAY99089.1|1783201_1783660_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAY99090.1|1783900_1785934_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	1860432	1870939	4884276		Enterobacteria_phage(37.5%)	10	NA	NA
QAY99150.1|1860432_1861836_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QAY99151.1|1862013_1862907_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAY99152.1|1863283_1864369_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAY99153.1|1864368_1865268_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAZ02061.1|1865315_1866194_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QAY99154.1|1866194_1866746_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QAY99155.1|1866751_1867726_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAY99156.1|1867741_1868515_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAY99157.1|1868519_1869599_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QAY99158.1|1869625_1870939_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	1948488	2014895	4884276	lysis,portal,plate,holin,integrase,terminase,capsid,protease,head,tail	Salmonella_phage(86.15%)	86	1941691:1941706	2017292:2017307
1941691:1941706	attL	GTGGTGGCGCTGGTGA	NA	NA	NA	NA
QAY99236.1|1948488_1948674_-|integrase	integrase	integrase	NA	NA	NA	NA
QAY99237.1|1949087_1949462_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAY99238.1|1949458_1949935_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	53.2	6.0e-38
QAY99239.1|1949968_1950331_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
QAY99240.1|1950374_1952135_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
QAY99241.1|1952152_1953202_+	arsenical-resistance protein	NA	NA	NA	NA	NA
QAY99242.1|1953220_1953523_-	DUF4102 domain-containing protein	NA	A7X7X0	Dichelobacter_phage	51.9	3.7e-09
QAZ02065.1|1953500_1953683_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99243.1|1953853_1955443_+	FMN/FAD transporter	NA	NA	NA	NA	NA
QAY99244.1|1956047_1956236_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99245.1|1956253_1957708_+	AMP nucleosidase	NA	NA	NA	NA	NA
QAY99246.1|1957824_1958079_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99247.1|1958612_1960343_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ02066.1|1960399_1962094_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99248.1|1963904_1964087_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99249.1|1964083_1964608_-	peptidase	NA	G9L6C4	Escherichia_phage	77.7	1.3e-36
QAY99250.1|1965255_1965546_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	2.3e-08
QAY99251.1|1965917_1966715_-	protein MtfA	NA	NA	NA	NA	NA
QAY99252.1|1967006_1967996_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAY99253.1|1967997_1968240_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAY99254.1|1968264_1968834_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAY99255.1|1968837_1969671_-	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
QAY99256.1|1969667_1970285_-	hypothetical protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
QAY99257.1|1970281_1970797_-	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
QAY99258.1|1970793_1971024_-	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
QAY99259.1|1971094_1971634_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAY99260.1|1971770_1972598_-	DUF2303 domain-containing protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
QAY99261.1|1972655_1973027_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
QAY99262.1|1973124_1973310_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99263.1|1973841_1974537_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAY99264.1|1974510_1974696_+	amino acid permease	NA	NA	NA	NA	NA
QAY99265.1|1974634_1974859_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAY99266.1|1974887_1975442_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
QAY99267.1|1975438_1976596_+	peptidase	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
QAY99268.1|1976592_1976817_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAY99269.1|1976813_1977632_+	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
QAY99270.1|1977591_1978116_+	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	2.4e-96
QAY99271.1|1978115_1979009_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
QAY99272.1|1979005_1979395_+	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
QAY99273.1|1979411_1980272_+	DNA-binding protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
QAZ02067.1|1980279_1981269_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	4.9e-191
QAY99274.1|1981279_1981903_+	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
QAZ02068.1|1982035_1982293_+	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
QAY99275.1|1982222_1982657_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99276.1|1982818_1983163_+|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
QAY99277.1|1983165_1983780_+	endolysin	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
QAY99278.1|1983776_1984262_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
QAY99279.1|1984474_1984894_+	hypothetical protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
QAY99280.1|1985113_1985416_+	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
QAY99281.1|1985476_1985827_+	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
QAY99282.1|1985943_1986447_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
QAY99283.1|1986443_1988177_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
QAY99284.1|1988188_1988371_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAY99285.1|1988370_1989612_+|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
QAY99286.1|1989553_1990240_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	6.5e-126
QAY99287.1|1990254_1991460_+|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
QAY99288.1|1991510_1991711_+	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
QAY99289.1|1991713_1992037_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
QAY99290.1|1992033_1992438_+|head,tail	head-tail adaptor protein	head,tail	Q8HAC9	Salmonella_phage	100.0	1.4e-72
QAY99291.1|1992409_1992922_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
QAY99292.1|1992918_1993479_+	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
QAY99293.1|1993482_1993647_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
QAY99294.1|1993636_1995133_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
QAY99295.1|1995132_1995489_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
QAY99296.1|1995485_1995812_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAY99297.1|1995896_1997825_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
QAY99298.1|1997858_1999199_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
QAY99299.1|1999195_2000254_+|plate	baseplate protein	plate	Q8HAC0	Salmonella_phage	100.0	1.3e-202
QAY99300.1|2000253_2000787_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
QAY99301.1|2000791_2001205_+	hypothetical protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
QAY99302.1|2001197_2002277_+|plate	phage baseplate protein	plate	A0A192Y6E4	Salmonella_phage	99.7	2.5e-204
QAY99303.1|2002279_2002867_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAY99304.1|2002853_2004416_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	100.0	2.6e-287
QAY99305.1|2004415_2004985_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	7.3e-107
QAY99306.1|2005269_2006277_-	non-LEE encoded effector protein NleB	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
QAY99307.1|2006489_2006711_+	DNA-binding protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
QAY99308.1|2006824_2007040_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99309.1|2007341_2007503_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99310.1|2007629_2008049_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAY99311.1|2008051_2009320_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.7	1.3e-225
QAY99312.1|2009774_2009987_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	5.1e-21
QAZ02069.1|2009997_2010186_+	cold-shock protein	NA	NA	NA	NA	NA
QAY99313.1|2010443_2011655_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.0	1.3e-108
QAY99314.1|2012304_2012604_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99315.1|2012695_2013391_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.1e-07
QAY99316.1|2013464_2014895_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
2017292:2017307	attR	GTGGTGGCGCTGGTGA	NA	NA	NA	NA
>prophage 5
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	2473036	2489761	4884276	tail,plate,integrase,terminase	Salmonella_phage(37.5%)	22	2472791:2472805	2489331:2489345
2472791:2472805	attL	CCCTGACGCCGGAAC	NA	NA	NA	NA
QAY99761.1|2473036_2473915_+|integrase	integrase	integrase	NA	NA	NA	NA
QAY99762.1|2473918_2474176_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99763.1|2475256_2476210_+	hypothetical protein	NA	A0A1D8EQC7	Escherichia_phage	26.1	1.0e-07
QAY99764.1|2476206_2476917_+|plate	phage baseplate protein	plate	NA	NA	NA	NA
QAY99765.1|2476926_2477304_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99766.1|2477300_2477519_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99767.1|2477518_2477866_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99768.1|2477852_2479262_+|plate	baseplate protein	plate	A0A2D0YGH8	Vibrio_phage	23.7	1.0e-16
QAY99769.1|2479261_2480017_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99770.1|2480009_2480240_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
QAZ02092.1|2480239_2480476_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99771.1|2480475_2481108_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99772.1|2481192_2481450_+	hypothetical protein	NA	H6WRY4	Salmonella_phage	64.7	2.0e-27
QAY99773.1|2481474_2482044_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.2	2.0e-88
QAY99774.1|2482033_2482858_-|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	95.6	1.5e-153
QAY99775.1|2484091_2484607_-	recombinase	NA	Q5QBN4	Enterobacteria_phage	47.0	2.1e-36
QAY99776.1|2484624_2486157_-	hypothetical protein	NA	NA	NA	NA	NA
QAY99777.1|2486460_2486859_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99778.1|2486918_2487260_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
QAY99779.1|2487256_2487511_-	type II toxin-antitoxin system HicA family toxin	NA	R4JMD3	Burkholderia_phage	42.9	4.2e-14
QAY99780.1|2487819_2488365_+	hypothetical protein	NA	NA	NA	NA	NA
QAY99781.1|2488351_2489761_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2I7RTP3	Vibrio_phage	35.0	8.3e-59
2489331:2489345	attR	GTTCCGGCGTCAGGG	NA	NA	NA	NA
>prophage 6
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	2954773	3039528	4884276	lysis,portal,tRNA,holin,integrase,protease,tail	Salmonella_phage(45.45%)	94	2978885:2978904	3050677:3050696
QAZ00264.1|2954773_2955454_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	72.4	1.6e-84
QAZ00265.1|2956092_2956752_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QAZ00266.1|2956838_2957168_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAZ00267.1|2957164_2957446_-	acylphosphatase	NA	NA	NA	NA	NA
QAZ00268.1|2957494_2958274_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ00269.1|2958299_2958848_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAZ00270.1|2959062_2960274_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAZ00271.1|2960331_2960649_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAZ00272.1|2960693_2961110_-	CoA-binding protein	NA	NA	NA	NA	NA
QAZ00273.1|2961280_2961943_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00274.1|2962037_2962496_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAZ00275.1|2962531_2964586_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
QAZ00276.1|2964709_2965156_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAZ00277.1|2965174_2967328_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAZ00278.1|2967314_2967920_-	DNA transformation protein	NA	NA	NA	NA	NA
QAZ00279.1|2968136_2968646_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAZ00280.1|2969002_2970055_+	porin OmpA	NA	NA	NA	NA	NA
QAZ00281.1|2970126_2970579_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAZ00282.1|2970764_2972525_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAZ00283.1|2972593_2973112_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ00284.1|2973211_2973379_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAZ00285.1|2973634_2974198_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00286.1|2974194_2975835_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QAZ00287.1|2975839_2977093_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ00288.1|2977107_2979015_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	5.4e-53
2978885:2978904	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QAZ00289.1|2979027_2981136_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAZ00290.1|2981234_2982344_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00291.1|2982340_2982883_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAZ00292.1|2983048_2984059_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
QAZ00293.1|2984266_2986879_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAZ00294.1|2987305_2987497_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAZ00295.1|2987767_2988454_+	virulence protein	NA	NA	NA	NA	NA
QAZ00296.1|2988438_2988738_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00297.1|2988806_2989433_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAZ00298.1|2990080_2991049_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
QAZ00299.1|2991524_2992106_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAZ00300.1|2992105_2994544_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QAZ00301.1|2994597_2994840_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00302.1|2994878_2998229_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAZ00303.1|2998300_2999005_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QAZ00304.1|2998902_2999640_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAZ00305.1|2999649_3000345_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAZ00306.1|3000434_3000968_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAZ00307.1|3001084_3001582_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAZ00308.1|3001680_3002013_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QAZ02116.1|3002009_3004997_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QAZ00309.1|3005076_3005406_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QAZ00310.1|3005402_3005801_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QAZ00311.1|3005846_3006596_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QAZ00312.1|3006607_3007009_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QAZ00313.1|3007005_3007572_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QAZ00314.1|3007552_3007852_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QAZ00315.1|3007844_3008168_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QAZ02118.1|3008258_3010340_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QAZ02117.1|3010263_3011781_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QAZ00316.1|3011807_3012014_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QAZ00317.1|3012010_3014149_-	DNA packaging protein	NA	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QAZ00318.1|3014105_3014639_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QAZ02120.1|3014846_3015326_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QAZ00319.1|3015343_3015796_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
QAZ02119.1|3015779_3016109_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ00320.1|3016384_3017071_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAZ00321.1|3017431_3017881_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00322.1|3018016_3018142_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00323.1|3018315_3018633_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00324.1|3018699_3019497_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAZ00325.1|3019486_3019633_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAZ00326.1|3019629_3020241_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QAZ00327.1|3020243_3020450_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAZ00328.1|3020449_3021052_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAZ00329.1|3021134_3021356_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00330.1|3021467_3021701_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAZ00331.1|3021992_3022283_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00332.1|3022360_3022672_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAZ00333.1|3022668_3023016_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAZ00334.1|3023026_3023776_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAZ00335.1|3023778_3024762_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAZ00336.1|3024846_3025221_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAZ00337.1|3025186_3025426_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAZ00338.1|3025545_3025956_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAZ00339.1|3026005_3026266_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00340.1|3026258_3026417_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QAZ00341.1|3026438_3026738_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
QAZ00342.1|3026864_3029750_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	95.5	0.0e+00
QAZ00343.1|3029712_3030870_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	3.6e-217
QAZ00344.1|3030912_3031152_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ00345.1|3031192_3031441_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAZ00346.1|3031485_3032778_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.3e-252
QAZ00347.1|3032972_3034175_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAZ00348.1|3034255_3035689_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAZ00349.1|3035934_3037149_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAZ00350.1|3037235_3037469_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00351.1|3037465_3037927_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ00352.1|3038127_3039528_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
3050677:3050696	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 7
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	3104086	3111399	4884276	protease,integrase	Ralstonia_phage(16.67%)	8	3098694:3098708	3110135:3110149
3098694:3098708	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QAZ00401.1|3104086_3104464_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.7e-19
QAZ00402.1|3104625_3104823_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00403.1|3105035_3107312_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAZ00404.1|3107342_3107663_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAZ00405.1|3107986_3108208_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAZ00406.1|3108162_3108357_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ00407.1|3108337_3110284_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
3110135:3110149	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QAZ00408.1|3110280_3111399_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 8
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	3346112	3412263	4884276	plate,tRNA,transposase,protease,head,tail	Shigella_phage(51.02%)	72	NA	NA
QAZ00622.1|3346112_3347780_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	95.8	0.0e+00
QAZ00623.1|3347990_3349943_-	PTS N-acetyl glucosamine transporter subunit IIABC	NA	A0A2I7SAJ6	Vibrio_phage	48.6	2.9e-09
QAZ00624.1|3350269_3351070_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
QAZ00625.1|3351129_3352284_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
QAZ00626.1|3352288_3353509_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
QAZ00627.1|3353555_3354308_+	UMP phosphatase	NA	NA	NA	NA	NA
QAZ00628.1|3354597_3356262_+	asparagine synthase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.2	1.6e-85
QAZ00629.1|3357327_3357903_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00630.1|3357969_3359145_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
QAZ00631.1|3359288_3360713_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
QAZ00632.1|3360878_3361964_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.6	6.6e-48
QAZ00633.1|3361960_3362434_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
QAZ00634.1|3362591_3363470_+	magnesium and cobalt efflux protein CorC	NA	NA	NA	NA	NA
QAZ02135.1|3363489_3365028_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
QAZ00635.1|3365364_3366291_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAZ00636.1|3366450_3367191_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QAZ00637.1|3367190_3367865_+	glutamate/aspartate ABC transporter permease	NA	NA	NA	NA	NA
QAZ00638.1|3367864_3368590_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	8.7e-28
QAZ00639.1|3368706_3369642_+	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA	NA
QAZ00640.1|3369673_3370912_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00641.1|3370987_3372667_+	molecular chaperone HscC	NA	F2Y0P3	Organic_Lake_phycodnavirus	36.1	1.0e-76
QAZ00642.1|3372688_3374152_-	J domain-containing protein	NA	NA	NA	NA	NA
QAZ00643.1|3374148_3374844_-	DUF1266 domain-containing protein	NA	NA	NA	NA	NA
QAZ02136.1|3376162_3376642_-	XRE family transcriptional regulator	NA	A0A076FRF7	Pseudomonas_phage	51.8	2.0e-09
QAZ00644.1|3376868_3377096_+	DNA-binding protein	NA	A0A2H4J3B6	uncultured_Caudovirales_phage	44.1	4.2e-05
QAZ02137.1|3377092_3379090_+|transposase	transposase	transposase	C9DGL1	Escherichia_phage	70.3	5.8e-284
QAZ00645.1|3379137_3380085_+	DNA transposition protein	NA	A0A0C4UQR3	Shigella_phage	81.7	2.0e-141
QAZ00646.1|3380097_3380337_+	hypothetical protein	NA	A0A0C4UQY4	Shigella_phage	58.1	4.7e-15
QAZ00647.1|3380353_3380611_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00648.1|3380620_3380875_+	host nuclease inhibitor protein	NA	A0A0U5KSG7	unidentified_phage	48.0	5.5e-14
QAZ00649.1|3380875_3381400_+	host-nuclease inhibitor protein Gam	NA	C9DGL8	Escherichia_phage	71.5	1.2e-63
QAZ00650.1|3381484_3381748_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00651.1|3381731_3382211_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00652.1|3382293_3382752_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ02138.1|3383111_3383432_+	hypothetical protein	NA	A0A2R2Z2X8	Escherichia_phage	62.8	2.8e-07
QAZ00653.1|3383428_3383878_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ00654.1|3383864_3384371_+	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	46.1	9.0e-32
QAZ00655.1|3384996_3385419_+	positive regulator of late transcription	NA	A0A0C4UQZ9	Shigella_phage	74.6	1.0e-52
QAZ00656.1|3385533_3386046_+	lysozyme	NA	C9DGM9	Escherichia_phage	82.9	5.8e-79
QAZ00657.1|3386032_3386419_+	DUF2570 domain-containing protein	NA	A0A0C4UR28	Shigella_phage	52.8	1.1e-26
QAZ00658.1|3386318_3386621_+	peptidase	NA	NA	NA	NA	NA
QAZ00659.1|3386577_3386772_+	hypothetical protein	NA	C9DGN1	Escherichia_phage	62.5	1.2e-16
QAZ00660.1|3386776_3387088_+	DUF2730 domain-containing protein	NA	A0A0C4UQY8	Shigella_phage	64.9	3.7e-28
QAZ00661.1|3387084_3387372_+	hypothetical protein	NA	A0A0C4UR00	Shigella_phage	91.6	1.1e-42
QAZ00662.1|3387381_3387960_+	DUF3486 domain-containing protein	NA	A0A0C4UQU5	Shigella_phage	91.7	3.5e-88
QAZ00663.1|3387962_3389627_+	hypothetical protein	NA	A0A0C4UR29	Shigella_phage	85.0	4.9e-276
QAZ00664.1|3389626_3391171_+	DUF935 domain-containing protein	NA	A0A0C4UQR8	Shigella_phage	75.1	3.9e-227
QAZ00665.1|3391154_3392486_+|head	phage head morphogenesis protein	head	A0A0C4UQY9	Shigella_phage	73.0	3.1e-188
QAZ00666.1|3392608_3393079_+	phage virion morphogenesis protein	NA	C9DGN8	Escherichia_phage	69.5	6.8e-58
QAZ00667.1|3393288_3394389_+|protease	protease	protease	A0A0C4UQU6	Shigella_phage	78.0	2.0e-148
QAZ00668.1|3394385_3395306_+|head	head protein	head	A0A0C4UQR9	Shigella_phage	75.8	2.5e-136
QAZ02139.1|3395421_3395793_+	hypothetical protein	NA	A0A0C4UQZ0	Shigella_phage	60.0	1.2e-28
QAZ00669.1|3395789_3396215_+	DUF1320 domain-containing protein	NA	C9DGP4	Escherichia_phage	61.7	3.2e-46
QAZ00670.1|3396214_3396751_+	DUF1834 domain-containing protein	NA	A0A0C4UQU7	Shigella_phage	74.9	5.3e-75
QAZ00671.1|3396743_3396920_+	DUF2635 domain-containing protein	NA	A0A0C4UR31	Shigella_phage	62.8	3.7e-09
QAZ00672.1|3396916_3398416_+|tail	phage tail protein	tail	C9DGP7	Escherichia_phage	72.1	8.2e-206
QAZ00673.1|3398425_3398782_+|tail	phage tail protein	tail	A0A0C4UQZ1	Shigella_phage	88.1	5.7e-57
QAZ00674.1|3398791_3399229_+	hypothetical protein	NA	A0A0C4UR03	Shigella_phage	71.3	1.7e-50
QAZ00675.1|3399370_3401446_+	hypothetical protein	NA	A0A0C4UQU8	Shigella_phage	50.9	3.4e-133
QAZ00676.1|3401453_3402890_+	multidrug DMT transporter permease	NA	A0A0C4UR32	Shigella_phage	41.8	6.4e-99
QAZ00677.1|3402879_3404013_+|plate	baseplate protein	plate	C9DGQ3	Escherichia_phage	72.4	3.4e-156
QAZ00678.1|3404012_3404597_+|plate	phage baseplate assembly protein V	plate	A0A0C4UQZ3	Shigella_phage	74.1	1.9e-81
QAZ00679.1|3404593_3405043_+	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	72.4	6.9e-52
QAZ00680.1|3405032_3406115_+	hypothetical protein	NA	A0A0C4UQU9	Shigella_phage	67.1	1.6e-139
QAZ02140.1|3406111_3406651_+	DUF2313 domain-containing protein	NA	C9DGQ7	Escherichia_phage	68.2	3.0e-65
QAZ00681.1|3406653_3408264_+	hypothetical protein	NA	Q6K1H2	Salmonella_virus	58.4	3.1e-126
QAZ00682.1|3408266_3408800_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	82.6	1.6e-79
QAZ00683.1|3408803_3409421_-|tail	tail fiber assembly protein	tail	A0A1S6KZY8	Salmonella_phage	87.2	4.0e-98
QAZ00684.1|3409390_3410692_-|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	87.9	1.7e-215
QAZ00685.1|3410721_3411288_+	DNA-invertase	NA	A0A1S6L009	Salmonella_phage	81.3	3.4e-80
QAZ00686.1|3411413_3411599_+	Com family DNA-binding transcriptional regulator	NA	A0A0C4UQS3	Shigella_phage	71.0	1.4e-19
QAZ00687.1|3411519_3412263_+	protein mom	NA	A0A0C4UQZ7	Shigella_phage	87.6	6.0e-125
>prophage 9
CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	4884276	4503850	4548625	4884276	tail,plate,tRNA	Burkholderia_phage(36.36%)	47	NA	NA
QAZ01660.1|4503850_4504849_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAZ01661.1|4504936_4506247_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ01662.1|4506493_4507009_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAZ01663.1|4507108_4507318_-	CsbD family protein	NA	NA	NA	NA	NA
QAZ02184.1|4507339_4507453_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ01664.1|4507449_4508775_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QAZ01665.1|4508953_4509562_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAZ01666.1|4509670_4510039_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAZ01667.1|4510209_4512630_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAZ01668.1|4512728_4513601_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAZ01669.1|4513614_4514112_-	chorismate lyase	NA	NA	NA	NA	NA
QAZ01670.1|4514292_4515210_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAZ01671.1|4515373_4516732_-	maltoporin	NA	NA	NA	NA	NA
QAZ01672.1|4516820_4517930_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAZ01673.1|4518290_4519481_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAZ01674.1|4519612_4521157_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAZ01675.1|4521171_4522062_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAZ01676.1|4522227_4522638_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAZ01677.1|4522780_4524877_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAZ01678.1|4524876_4525614_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ01679.1|4525610_4526249_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAZ01680.1|4526312_4526555_-	outer membrane protein	NA	NA	NA	NA	NA
QAZ01681.1|4526998_4528648_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ01682.1|4528992_4530342_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAZ01683.1|4530472_4530820_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAZ01684.1|4531396_4531684_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
QAZ01685.1|4531686_4532292_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	9.3e-60
QAZ01686.1|4532304_4532619_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAZ01687.1|4532778_4533234_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ01688.1|4533230_4533428_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAZ01689.1|4533417_4534845_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.4e-194
QAZ01690.1|4534844_4535369_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAZ01691.1|4535420_4535738_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAZ01692.1|4535697_4535826_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAZ01693.1|4535922_4538274_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.3	5.8e-65
QAZ01694.1|4538273_4539227_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAZ01695.1|4539226_4539436_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAZ01696.1|4539423_4540467_+	phage protein D	NA	A4JWL3	Burkholderia_virus	45.9	3.8e-77
QAZ01697.1|4540476_4541199_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
QAZ01698.1|4541526_4541889_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAZ01699.1|4541885_4542815_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
QAZ01700.1|4542814_4544362_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.5e-48
QAZ01701.1|4544525_4544885_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAZ01702.1|4544875_4545991_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.0	9.0e-101
QAZ01703.1|4545983_4546616_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAZ01704.1|4546618_4548100_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.3e-51
QAZ01705.1|4548109_4548625_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	41.2	3.4e-34
