assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136035.1_ASM413603v1	CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	2	974960-975994	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	15,16,16,15	16	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	NA,NA|57aa|down_2|CP025248.1_977267_977438_+,NA|81aa|down_6|CP025248.1_981972_982215_-	NA|381aa|up_9|CP025248.1_960758_961901_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP025248.1_961944_964701_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP025248.1_964758_966054_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP025248.1_966105_968340_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP025248.1_968423_968780_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP025248.1_968745_969042_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP025248.1_969809_970610_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025248.1_970837_972475_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025248.1_972557_973856_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025248.1_973991_974663_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP025248.1_976091_976889_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP025248.1_976976_977339_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP025248.1_977267_977438_+	NA	NA|600aa|down_3|CP025248.1_977762_979562_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025248.1_979561_981274_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025248.1_981349_982084_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP025248.1_981972_982215_-	NA	NA|318aa|down_7|CP025248.1_982296_983250_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_8|CP025248.1_983693_986357_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_9|CP025248.1_986368_987928_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_004136035.1_ASM413603v1	CP025248	Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome	3	992241-993062	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,13,13	13	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG	NA|81aa|up_9|CP025248.1_981972_982215_-,NA	NA|81aa|up_9|CP025248.1_981972_982215_-	NA	NA|318aa|up_8|CP025248.1_982296_983250_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP025248.1_983693_986357_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|CP025248.1_986368_987928_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|CP025248.1_987924_988473_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP025248.1_988486_989545_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP025248.1_989555_990302_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP025248.1_990283_990934_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP025248.1_990930_991851_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP025248.1_991850_992144_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP025248.1_993076_994123_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025248.1_994373_995282_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025248.1_995291_996731_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025248.1_996717_997323_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP025248.1_997340_997697_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025248.1_997887_998199_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025248.1_998217_998928_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025248.1_998927_999407_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025248.1_999403_1000453_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025248.1_1000433_1001195_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
