The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	678735	722140	4863437	tail,tRNA,terminase,holin,head,portal,capsid,integrase	Cronobacter_phage(65.0%)	53	672801:672821	720855:720875
672801:672821	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
QAZ02813.1|678735_680301_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.7e-12
QAZ02814.1|680297_680945_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ02815.1|681176_681944_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAZ02816.1|682154_683192_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	64.7	6.6e-122
QAZ02817.1|683195_683762_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	35.0	3.0e-20
QAZ02818.1|683778_684360_-	phage repressor protein	NA	F1BUS8	Erwinia_phage	39.8	2.5e-33
QAZ02819.1|684495_684717_+	regulator	NA	NA	NA	NA	NA
QAZ02820.1|684747_685251_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAZ02821.1|685260_685488_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ02822.1|685477_685903_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAZ02823.1|685902_686304_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.1e-48
QAZ06778.1|686450_686627_+	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
QAZ02824.1|686617_687214_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	72.3	3.8e-74
QAZ02825.1|687210_687540_+	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	45.2	3.0e-12
QAZ02826.1|687529_688390_+	adenine methylase	NA	F1BUN1	Cronobacter_phage	83.5	2.0e-132
QAZ02827.1|688386_690408_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.8	1.9e-298
QAZ02828.1|690527_690734_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ02829.1|690707_691031_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAZ02830.1|691027_692089_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.3	3.0e-162
QAZ02831.1|692085_693861_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	1.7e-290
QAZ02832.1|694021_694822_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	54.8	3.2e-76
QAZ02833.1|694883_695906_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
QAZ02834.1|695909_696611_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	2.7e-87
QAZ02835.1|696656_697160_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAZ02836.1|697156_697663_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
QAZ02837.1|697659_698367_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	3.4e-101
QAZ02838.1|698363_699491_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.5	3.3e-175
QAZ02839.1|699487_699943_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAZ02840.1|699952_700246_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAZ02841.1|700242_700584_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAZ02842.1|700583_700916_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	71.8	6.7e-36
QAZ02843.1|700887_701076_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	80.6	1.1e-22
QAZ02844.1|701062_701320_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAZ02845.1|701507_703478_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	69.8	2.1e-270
QAZ02846.1|703474_703804_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	73.3	2.2e-39
QAZ02847.1|703800_704985_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAZ02848.1|704971_705565_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAZ02849.1|705574_707809_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	4.2e-182
QAZ02850.1|707821_708376_+|tail	tail assembly chaperone	tail	S4TUB9	Salmonella_phage	88.4	3.0e-89
QAZ02851.1|708365_709091_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
QAZ02852.1|709062_709608_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	1.4e-59
QAZ02853.1|709607_711311_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	2.2e-223
QAZ02854.1|711469_711691_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ02855.1|712483_712990_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAZ02856.1|713113_715096_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
QAZ02857.1|715110_716856_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAZ02858.1|717091_717307_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAZ02859.1|717534_718548_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAZ02860.1|718451_718790_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ02861.1|718797_719409_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
QAZ02862.1|719515_719875_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAZ02863.1|719972_720794_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAZ02864.1|720898_722140_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.9	6.5e-92
720855:720875	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 2
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	1258234	1334980	4863437	tRNA,lysis,tail,terminase,holin,head,portal,capsid,protease,transposase,integrase	Salmonella_phage(37.93%)	94	1250315:1250331	1340827:1340843
1250315:1250331	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAZ03367.1|1258234_1259272_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAZ03368.1|1259387_1260077_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAZ03369.1|1260395_1260779_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAZ03370.1|1260840_1261428_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAZ06798.1|1261530_1262430_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ03371.1|1262447_1263782_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAZ03372.1|1263911_1264649_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QAZ03373.1|1264633_1266256_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAZ03374.1|1266340_1266520_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03375.1|1266680_1267256_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAZ03376.1|1267287_1267938_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAZ03377.1|1267937_1268894_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAZ03378.1|1268890_1269370_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QAZ03379.1|1269399_1269516_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ03380.1|1269867_1271097_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
QAZ03381.1|1271074_1271359_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAZ03382.1|1271399_1271639_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ03383.1|1271681_1272839_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAZ03384.1|1272801_1275729_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
QAZ03385.1|1275855_1276206_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAZ03386.1|1276227_1276386_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAZ03387.1|1276842_1277505_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ03388.1|1277504_1277891_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ03389.1|1277883_1278723_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAZ03390.1|1278781_1279177_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAZ03391.1|1279276_1279519_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAZ03392.1|1279478_1279853_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QAZ03393.1|1279944_1280829_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
QAZ03394.1|1280825_1281521_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAZ03395.1|1281534_1282233_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAZ03396.1|1282340_1282973_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03397.1|1283215_1283449_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAZ03398.1|1283565_1283814_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAZ03399.1|1283848_1284451_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAZ03400.1|1284450_1284657_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAZ03401.1|1284659_1285271_+	protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.5	1.8e-90
QAZ03402.1|1285267_1285408_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAZ03403.1|1285404_1286082_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAZ03404.1|1286078_1286264_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03405.1|1286354_1286918_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAZ03406.1|1287424_1287613_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03407.1|1287827_1288514_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAZ06799.1|1288789_1289119_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ03408.1|1289102_1289555_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAZ06800.1|1289572_1290025_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAZ03409.1|1290260_1290662_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAZ03410.1|1290696_1290891_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03411.1|1290948_1291494_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAZ03412.1|1291465_1293397_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAZ03413.1|1293380_1293584_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAZ03414.1|1293580_1295161_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAZ03415.1|1295150_1296647_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAZ03416.1|1296659_1297007_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAZ03417.1|1297061_1298090_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAZ03418.1|1298147_1298507_+	DNA packaging protein	NA	NA	NA	NA	NA
QAZ03419.1|1298517_1298901_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAZ03420.1|1298928_1299507_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAZ03421.1|1299555_1300806_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QAZ03422.1|1300794_1301196_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAZ03423.1|1301203_1301950_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAZ03424.1|1302000_1302396_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAZ03425.1|1302392_1302731_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAZ03426.1|1302702_1305798_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
QAZ03427.1|1305800_1306130_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAZ03428.1|1306139_1306838_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAZ03429.1|1306844_1307582_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAZ03430.1|1307479_1308127_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAZ03431.1|1308188_1311551_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAZ03432.1|1311589_1311832_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03433.1|1311885_1314258_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAZ03434.1|1314254_1315079_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAZ03435.1|1315068_1315647_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAZ03436.1|1315743_1315971_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ03437.1|1316077_1316290_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAZ06801.1|1316352_1316418_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ03438.1|1317082_1317628_-|transposase	transposase	transposase	NA	NA	NA	NA
QAZ03439.1|1317874_1318012_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ03440.1|1318502_1319996_-	type III secretion system protein	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAZ03441.1|1320400_1322200_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAZ03442.1|1322216_1323191_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAZ03443.1|1323464_1324145_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAZ03444.1|1324141_1325047_+	GTPase Era	NA	NA	NA	NA	NA
QAZ03445.1|1325058_1325787_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAZ03446.1|1325798_1326530_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAZ03447.1|1326529_1326910_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAZ03448.1|1327021_1327282_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
QAZ03449.1|1327319_1328246_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	1.8e-09
QAZ03450.1|1328361_1329558_+	MFS transporter	NA	NA	NA	NA	NA
QAZ03451.1|1329579_1330497_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QAZ03452.1|1330535_1331384_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ03453.1|1331499_1332393_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAZ03454.1|1332403_1333765_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAZ03455.1|1333768_1334404_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAZ03456.1|1334428_1334980_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1340827:1340843	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 3
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	1778887	1788058	4863437	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAZ03854.1|1778887_1779835_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
QAZ03855.1|1779818_1780550_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ03856.1|1780530_1780638_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ03857.1|1780697_1781429_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAZ03858.1|1781651_1783337_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QAZ03859.1|1783333_1784053_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ03860.1|1784099_1784567_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAZ03861.1|1784623_1785154_-	lipoprotein	NA	NA	NA	NA	NA
QAZ03862.1|1785325_1785784_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAZ03863.1|1786024_1788058_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	1856149	1866656	4863437		Enterobacteria_phage(37.5%)	10	NA	NA
QAZ03918.1|1856149_1857553_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QAZ03919.1|1857730_1858624_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAZ03920.1|1859000_1860086_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAZ03921.1|1860085_1860985_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAZ06817.1|1861032_1861911_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QAZ03922.1|1861911_1862463_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QAZ03923.1|1862468_1863443_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAZ03924.1|1863458_1864232_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAZ03925.1|1864236_1865316_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QAZ03926.1|1865342_1866656_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 5
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	1959788	1970438	4863437		Morganella_phage(25.0%)	13	NA	NA
QAZ04016.1|1959788_1960313_-	peptidase	NA	G9L6C4	Escherichia_phage	77.7	1.3e-36
QAZ04017.1|1960959_1961250_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	1.0e-08
QAZ04018.1|1961621_1962419_-	protein MtfA	NA	NA	NA	NA	NA
QAZ04019.1|1962899_1963061_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04020.1|1963187_1963607_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAZ04021.1|1963609_1964878_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
QAZ04022.1|1965332_1965545_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAZ06824.1|1965555_1965744_+	cold-shock protein	NA	NA	NA	NA	NA
QAZ04023.1|1966001_1967198_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	5.1e-110
QAZ04024.1|1967209_1967410_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04025.1|1967847_1968159_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04026.1|1968238_1968934_+	phosphohydrolase	NA	S4W232	Pandoravirus	28.0	2.8e-07
QAZ04027.1|1969007_1970438_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	2075476	2110593	4863437	tail,protease,integrase	Salmonella_phage(25.0%)	37	2077234:2077249	2092267:2092282
QAZ04140.1|2075476_2076556_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
2077234:2077249	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
QAZ04141.1|2077689_2077977_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	92.7	8.1e-38
QAZ04142.1|2078764_2078932_-	lytic enzyme	NA	NA	NA	NA	NA
QAZ04143.1|2078996_2079185_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04144.1|2079657_2080539_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	74.9	1.4e-64
QAZ04145.1|2080635_2080836_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ04146.1|2081037_2081142_-|tail	phage tail protein	tail	NA	NA	NA	NA
QAZ04147.1|2081404_2081530_+	arsenic transporter	NA	NA	NA	NA	NA
QAZ04148.1|2081658_2081925_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04149.1|2082677_2083292_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
QAZ04150.1|2083301_2083460_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04151.1|2083592_2084507_-	protein PagO	NA	NA	NA	NA	NA
QAZ06830.1|2085124_2085325_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04152.1|2085615_2085864_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04153.1|2085801_2086170_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
QAZ04154.1|2087633_2087774_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04155.1|2087938_2088208_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
QAZ04156.1|2088254_2088449_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04157.1|2088577_2088997_+	N-acetyltransferase	NA	NA	NA	NA	NA
QAZ04158.1|2092069_2093083_-	acyltransferase	NA	NA	NA	NA	NA
2092267:2092282	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
QAZ04159.1|2093779_2093983_-	fimbrial protein	NA	NA	NA	NA	NA
QAZ04160.1|2094166_2094451_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04161.1|2095610_2095820_+	chemotaxis protein	NA	NA	NA	NA	NA
QAZ04162.1|2096047_2096524_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04163.1|2096839_2097235_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
QAZ04164.1|2097918_2098641_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
QAZ04165.1|2098925_2099090_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04166.1|2099313_2099964_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	2.7e-57
QAZ04167.1|2099982_2100174_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
QAZ04168.1|2100284_2100524_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
QAZ06831.1|2100638_2102078_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
QAZ04169.1|2102155_2104795_-	MCE family protein	NA	NA	NA	NA	NA
QAZ04170.1|2104757_2106041_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ04171.1|2106082_2106667_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
QAZ04172.1|2106764_2107451_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
QAZ04173.1|2107470_2109519_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
QAZ04174.1|2109711_2110593_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 7
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	2868821	2997057	4863437	tail,lysis,tRNA,holin,head,portal,protease,integrase	Salmonella_phage(51.89%)	158	2936414:2936433	3008209:3008228
QAZ06864.1|2868821_2869142_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	76.6	1.2e-08
QAZ04927.1|2869359_2870235_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
QAZ04928.1|2870456_2871137_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	9.8e-82
QAZ04929.1|2871525_2871792_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
QAZ04930.1|2871848_2872496_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ06865.1|2872538_2872736_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
QAZ04931.1|2873361_2873754_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
QAZ04932.1|2873863_2874472_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
QAZ04933.1|2874534_2874720_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04934.1|2874968_2875487_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
QAZ04935.1|2875501_2877034_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	66.2	1.4e-128
QAZ04936.1|2877033_2877714_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
QAZ04937.1|2877710_2878910_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
QAZ04938.1|2878910_2879264_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	95.7	3.0e-58
QAZ04939.1|2879263_2880016_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
QAZ04940.1|2880134_2880590_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04941.1|2880673_2881006_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
QAZ04942.1|2881002_2882070_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
QAZ04943.1|2882072_2882375_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
QAZ04944.1|2882374_2882950_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
QAZ04945.1|2882949_2884959_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
QAZ06866.1|2884948_2885125_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
QAZ04946.1|2885136_2885589_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
QAZ04947.1|2885592_2886036_-	DUF3277 domain-containing protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	1.0e-55
QAZ04948.1|2886048_2887194_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.3	1.2e-164
QAZ04949.1|2887197_2887761_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	78.7	2.1e-82
QAZ04950.1|2887735_2888125_-|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	98.4	2.1e-68
QAZ04951.1|2888111_2888666_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.4e-94
QAZ04952.1|2888662_2889070_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	3.0e-70
QAZ04953.1|2889035_2889425_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	62.0	4.0e-32
QAZ04954.1|2889466_2890408_-	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	3.1e-179
QAZ04955.1|2890419_2890917_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
QAZ04956.1|2890921_2892154_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.3	3.7e-228
QAZ06867.1|2892157_2892697_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	91.0	4.5e-82
QAZ04957.1|2892788_2894258_-	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.3e-280
QAZ04958.1|2894257_2895880_-	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
QAZ04959.1|2895882_2896512_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	1.5e-108
QAZ06868.1|2897012_2897468_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	76.8	1.3e-53
QAZ04960.1|2897785_2898325_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	74.1	4.0e-78
QAZ06869.1|2898302_2898605_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAZ04961.1|2898807_2898996_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04962.1|2899388_2899967_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
QAZ04963.1|2899963_2900257_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
QAZ04964.1|2900253_2900850_-	DUF1367 domain-containing protein	NA	H9C173	Pectobacterium_phage	73.7	1.5e-81
QAZ04965.1|2900918_2901110_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04966.1|2901293_2901632_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
QAZ04967.1|2901631_2901802_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
QAZ04968.1|2901798_2902401_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
QAZ04969.1|2902393_2902642_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04970.1|2902645_2903326_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ04971.1|2903363_2904752_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
QAZ04972.1|2904748_2905729_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
QAZ04973.1|2905731_2905956_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
QAZ04974.1|2905978_2906425_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
QAZ06870.1|2906359_2906575_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04975.1|2906489_2906723_-	XRE family transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
QAZ04976.1|2906821_2907286_+	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
QAZ04977.1|2907970_2908294_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04978.1|2908301_2908547_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
QAZ04979.1|2908576_2910841_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.7	1.5e-102
QAZ04980.1|2910837_2911392_+	hypothetical protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
QAZ04981.1|2911394_2911577_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04982.1|2911626_2911824_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
QAZ04983.1|2911789_2912014_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
QAZ04984.1|2912014_2913034_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
QAZ04985.1|2913621_2914281_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QAZ04986.1|2914367_2914697_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAZ04987.1|2914693_2914975_-	acylphosphatase	NA	NA	NA	NA	NA
QAZ04988.1|2915023_2915803_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ04989.1|2915828_2916377_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAZ04990.1|2916591_2917803_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAZ04991.1|2917860_2918178_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAZ04992.1|2918222_2918639_-	CoA-binding protein	NA	NA	NA	NA	NA
QAZ04993.1|2918809_2919472_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ04994.1|2919566_2920025_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAZ04995.1|2920060_2922115_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	1.1e-19
QAZ04996.1|2922238_2922685_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAZ04997.1|2922703_2924857_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAZ04998.1|2924843_2925449_-	DNA transformation protein	NA	NA	NA	NA	NA
QAZ04999.1|2925665_2926175_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAZ05000.1|2926531_2927584_+	porin OmpA	NA	NA	NA	NA	NA
QAZ05001.1|2927655_2928108_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAZ05002.1|2928293_2930054_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAZ05003.1|2930122_2930641_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ05004.1|2930740_2930908_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAZ05005.1|2931163_2931727_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05006.1|2931723_2933364_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QAZ05007.1|2933368_2934622_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ05008.1|2934636_2936544_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
2936414:2936433	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QAZ05009.1|2936556_2938665_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAZ05010.1|2938763_2939873_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05011.1|2939869_2940412_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAZ05012.1|2940577_2941588_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAZ05013.1|2941795_2944408_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	4.8e-20
QAZ05014.1|2944834_2945026_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAZ05015.1|2945296_2945983_+	virulence protein	NA	NA	NA	NA	NA
QAZ05016.1|2945967_2946267_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05017.1|2946335_2946962_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAZ05018.1|2947609_2948578_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
QAZ05019.1|2949053_2949635_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAZ05020.1|2949634_2952073_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QAZ05021.1|2952126_2952369_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05022.1|2952407_2955758_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAZ05023.1|2955829_2956534_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QAZ05024.1|2956431_2957169_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAZ05025.1|2957178_2957874_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAZ05026.1|2957963_2958497_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAZ05027.1|2958613_2959111_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAZ05028.1|2959209_2959542_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QAZ06871.1|2959538_2962526_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QAZ05029.1|2962605_2962935_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QAZ05030.1|2962931_2963330_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QAZ05031.1|2963375_2964125_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QAZ05032.1|2964136_2964538_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QAZ05033.1|2964534_2965101_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QAZ05034.1|2965081_2965381_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QAZ05035.1|2965373_2965697_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QAZ06873.1|2965787_2967869_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QAZ06872.1|2967792_2969310_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QAZ05036.1|2969336_2969543_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QAZ05037.1|2969539_2971678_-	DNA packaging protein	NA	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QAZ05038.1|2971634_2972168_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QAZ06875.1|2972375_2972855_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QAZ05039.1|2972872_2973325_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
QAZ06874.1|2973308_2973638_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ05040.1|2973913_2974600_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAZ05041.1|2974960_2975410_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05042.1|2975545_2975671_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05043.1|2975844_2976162_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05044.1|2976228_2977026_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAZ05045.1|2977015_2977162_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAZ05046.1|2977158_2977770_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QAZ05047.1|2977772_2977979_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAZ05048.1|2977978_2978581_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAZ05049.1|2978663_2978885_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05050.1|2978996_2979230_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAZ05051.1|2979521_2979812_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05052.1|2979889_2980201_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAZ05053.1|2980197_2980545_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAZ05054.1|2980555_2981305_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAZ05055.1|2981307_2982291_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAZ05056.1|2982375_2982750_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAZ05057.1|2982715_2982955_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAZ05058.1|2983074_2983485_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAZ05059.1|2983534_2983795_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05060.1|2983787_2983946_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QAZ05061.1|2983967_2984267_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
QAZ05062.1|2984393_2987279_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
QAZ05063.1|2987241_2988399_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QAZ05064.1|2988441_2988681_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ05065.1|2988721_2988970_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAZ05066.1|2989014_2990307_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.0e-252
QAZ05067.1|2990501_2991704_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAZ05068.1|2991784_2993218_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAZ05069.1|2993463_2994678_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAZ05070.1|2994764_2994998_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05071.1|2994994_2995456_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ05072.1|2995656_2997057_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
3008209:3008228	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 8
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	3061487	3068801	4863437	protease,integrase	Ralstonia_phage(16.67%)	8	3056362:3056376	3067537:3067551
3056362:3056376	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QAZ05120.1|3061487_3061865_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	42.7	5.9e-20
QAZ05121.1|3062026_3062224_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05122.1|3062437_3064714_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAZ05123.1|3064744_3065065_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAZ05124.1|3065388_3065610_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAZ05125.1|3065564_3065759_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05126.1|3065739_3067686_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3067537:3067551	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QAZ05127.1|3067682_3068801_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.8e-08
>prophage 9
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	3144651	3230109	4863437	tail,lysis,terminase,head,portal,coat,protease,integrase	Salmonella_phage(38.24%)	106	3192998:3193022	3230175:3230199
QAZ05197.1|3144651_3145167_-|protease	outer membrane protease	protease	A5LH44	Enterobacteria_phage	34.2	1.1e-16
QAZ05198.1|3145520_3146408_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
QAZ05199.1|3146710_3147214_+	DNA starvation/stationary phase protection protein	NA	A0A222YYG6	Streptomyces_phage	23.0	7.1e-05
QAZ05200.1|3147690_3148437_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
QAZ05201.1|3148582_3149242_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
QAZ05202.1|3149238_3149961_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.2	1.9e-35
QAZ05203.1|3150079_3152302_+	mechanosensitive channel protein	NA	NA	NA	NA	NA
QAZ05204.1|3152298_3153225_-	ribosomal RNA large subunit methyltransferase F	NA	NA	NA	NA	NA
QAZ05205.1|3153429_3153696_+	DksA/TraR family C4-type zinc finger protein	NA	E5E4B1	Acinetobacter_phage	52.8	2.2e-13
QAZ05206.1|3153980_3154241_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ05207.1|3154396_3155371_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
QAZ05208.1|3155400_3157545_-	ATP-dependent helicase DinG	NA	A0A127AW80	Bacillus_phage	26.7	7.4e-43
QAZ05209.1|3157752_3159114_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	2.9e-53
QAZ05210.1|3159343_3160018_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ05211.1|3160017_3161013_+	secretion protein HlyD	NA	NA	NA	NA	NA
QAZ05212.1|3161005_3162742_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.3	1.3e-18
QAZ05213.1|3162734_3163865_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ05214.1|3163980_3165087_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ05215.1|3165048_3165459_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05216.1|3165591_3166350_+	EEP domain-containing protein	NA	NA	NA	NA	NA
QAZ05217.1|3166346_3167588_+	cardiolipin synthase B	NA	NA	NA	NA	NA
QAZ05218.1|3167587_3168550_+	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA	NA
QAZ05219.1|3168552_3169113_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05220.1|3169120_3169729_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05221.1|3169752_3170460_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05222.1|3170605_3171310_-	BAX inhibitor (BI)-1/YccA family protein	NA	NA	NA	NA	NA
QAZ05223.1|3171357_3171810_-	molybdopterin synthase catalytic subunit	NA	NA	NA	NA	NA
QAZ05224.1|3171811_3172063_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
QAZ05225.1|3172049_3172535_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
QAZ05226.1|3172537_3173050_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
QAZ05227.1|3173071_3174061_-	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
QAZ05228.1|3174457_3175366_+	hypothetical protein	NA	A1IMD5	Streptococcus_phage	29.9	6.0e-26
QAZ05229.1|3175457_3177725_-	SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP	NA	Q9MBL9	Phage_Gifsy-2	42.1	4.1e-15
QAZ05230.1|3177732_3177906_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05231.1|3178214_3180236_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
QAZ05232.1|3180232_3180460_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05233.1|3180886_3181573_-	dethiobiotin synthase	NA	NA	NA	NA	NA
QAZ05234.1|3181565_3182321_-	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA	NA
QAZ05235.1|3182304_3183462_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
QAZ05236.1|3183458_3184499_-	biotin synthase	NA	NA	NA	NA	NA
QAZ05237.1|3184585_3185875_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.5	7.7e-19
QAZ05238.1|3185932_3186409_+	kinase inhibitor	NA	NA	NA	NA	NA
QAZ05239.1|3186493_3188014_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.0	1.7e-81
QAZ05240.1|3188015_3189701_-	urocanate hydratase	NA	NA	NA	NA	NA
QAZ05241.1|3189897_3190623_-	histidine utilization repressor	NA	NA	NA	NA	NA
QAZ05242.1|3190667_3191609_-	formimidoylglutamase	NA	NA	NA	NA	NA
QAZ05243.1|3191605_3192829_-	imidazolonepropionase	NA	NA	NA	NA	NA
3192998:3193022	attL	CGTTCAACTTAGTATAAAAAAGCAG	NA	NA	NA	NA
QAZ05244.1|3193290_3195147_-|tail	phage tail protein	tail	S4TVJ1	Salmonella_phage	90.1	2.3e-274
QAZ05245.1|3195184_3195415_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ05246.1|3195431_3197423_-	DNA transfer protein	NA	A0A1R3Y5Q1	Salmonella_virus	96.6	0.0e+00
QAZ05247.1|3197422_3198718_-	acyltransferase	NA	Q716G3	Shigella_phage	84.0	2.1e-181
QAZ05248.1|3198727_3199420_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	99.6	2.7e-111
QAZ05249.1|3199422_3199878_-	hypothetical protein	NA	I1TEJ3	Salmonella_phage	98.7	4.4e-86
QAZ05250.1|3199877_3200579_-|tail	phage tail protein	tail	C6ZR14	Salmonella_phage	92.3	4.7e-71
QAZ05251.1|3200582_3202001_-	hypothetical protein	NA	A0A075B8I2	Enterobacteria_phage	98.3	3.9e-274
QAZ05252.1|3202010_3202472_-|head	head DNA stabilization protein	head	A5VW70	Enterobacteria_phage	100.0	7.1e-84
QAZ05253.1|3202452_3202641_-	hypothetical protein	NA	A5VW71	Enterobacteria_phage	100.0	2.9e-28
QAZ05254.1|3202682_3203936_-|coat	coat protein	coat	A0A088CQ56	Enterobacteria_phage	98.3	1.0e-233
QAZ05255.1|3203954_3204848_-	scaffolding protein	NA	A0A088CPT0	Enterobacteria_phage	84.2	2.6e-114
QAZ05256.1|3204938_3207137_-|portal	portal protein	portal	A0A088CQ69	Enterobacteria_phage	97.3	0.0e+00
QAZ05257.1|3207138_3208554_-|terminase	PBSX family phage terminase large subunit	terminase	A5VW75	Enterobacteria_phage	99.2	3.2e-276
QAZ06883.1|3208550_3208973_-	ubiquitin carboxyl-hydrolase	NA	Q716H4	Shigella_phage	99.3	3.6e-74
QAZ05258.1|3208996_3209176_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	93.2	2.1e-23
QAZ05259.1|3209177_3209420_-	hypothetical protein	NA	A0A0M4R322	Salmonella_phage	98.8	8.3e-36
QAZ05260.1|3209715_3210243_-	DUF2829 domain-containing protein	NA	A0A1B0VMG3	Pseudomonas_phage	54.6	3.3e-45
QAZ05261.1|3210321_3210759_-|lysis	lysis protein	lysis	A0A2I6PIF7	Escherichia_phage	97.9	6.5e-71
QAZ06884.1|3210847_3211345_-	lysozyme	NA	I6R0P2	Salmonella_phage	100.0	9.9e-92
QAZ05262.1|3211322_3211526_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QAZ05263.1|3211989_3212508_-	antiterminator	NA	Q716B8	Shigella_phage	98.8	2.2e-94
QAZ05264.1|3212498_3213170_-	serine/threonine protein phosphatase	NA	Q5TJL8	Enterobacteria_phage	95.5	2.0e-127
QAZ05265.1|3213166_3213775_-	protein NinG	NA	I6S604	Salmonella_phage	95.0	2.9e-93
QAZ05266.1|3213749_3213929_-	NinF family protein	NA	I6R994	Salmonella_phage	94.9	1.1e-27
QAZ05267.1|3213925_3214102_-	NinE family protein	NA	Q5G8S3	Enterobacteria_phage	100.0	3.0e-27
QAZ05268.1|3214068_3214242_-	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
QAZ05269.1|3214238_3214676_-	recombination protein NinB	NA	A0A192Y6T2	Salmonella_phage	98.6	9.4e-78
QAZ05270.1|3214690_3214897_-	hypothetical protein	NA	I1TEG6	Salmonella_phage	98.5	2.7e-35
QAZ05271.1|3214900_3215152_-	hypothetical protein	NA	A0A220NQX3	Salmonella_phage	65.5	2.9e-23
QAZ05272.1|3215163_3215364_-	hypothetical protein	NA	Q716C9	Shigella_phage	100.0	4.6e-32
QAZ05273.1|3215360_3215687_-	hypothetical protein	NA	Q716D0	Shigella_phage	99.1	4.2e-59
QAZ05274.1|3215759_3216029_-	hypothetical protein	NA	G9L682	Escherichia_phage	98.9	1.9e-44
QAZ05275.1|3216025_3216316_-	hypothetical protein	NA	K7PH23	Enterobacteria_phage	100.0	2.5e-50
QAZ05276.1|3216312_3217158_-	ATP-binding protein	NA	K7PLU3	Enterobacteria_phage	73.6	2.1e-110
QAZ05277.1|3217160_3218003_-	replication protein	NA	K7PGT1	Enterobacteria_phage	94.2	1.0e-128
QAZ05278.1|3217989_3218634_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ06885.1|3218668_3218947_-	hypothetical protein	NA	Q8VNP9	Enterobacteria_phage	100.0	3.6e-43
QAZ05279.1|3219055_3219250_-	Cro/Cl family transcriptional regulator	NA	K7PLQ6	Enterobacteria_phage	100.0	1.8e-28
QAZ05280.1|3219356_3220073_+	peptidase S24	NA	K7PGR7	Enterobacteria_phage	100.0	9.2e-123
QAZ05281.1|3220091_3220460_+	hypothetical protein	NA	K7PJJ3	Enterobacteria_phage	100.0	1.3e-56
QAZ05282.1|3220827_3221133_+	hypothetical protein	NA	A5VW99	Enterobacteria_phage	92.8	1.3e-25
QAZ05283.1|3221403_3221598_+	restriction endonuclease	NA	A0A2H4FS18	Salmonella_phage	100.0	2.5e-30
QAZ06886.1|3221681_3222665_+	hypothetical protein	NA	Q5G8T6	Enterobacteria_phage	82.6	8.3e-74
QAZ05284.1|3222859_3223033_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	I6R987	Salmonella_phage	100.0	8.9e-24
QAZ05285.1|3223013_3223202_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QAZ05286.1|3223331_3224039_+	recombinase	NA	B8K1D9	Salmonella_phage	96.2	6.7e-134
QAZ05287.1|3224039_3224498_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	89.0	2.6e-70
QAZ05288.1|3224506_3224986_+	hypothetical protein	NA	Q716E9	Shigella_phage	91.2	1.6e-86
QAZ05289.1|3224994_3225543_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	100.0	2.1e-106
QAZ05290.1|3225558_3225852_+	RecBCD nuclease inhibitor	NA	A0A1V0E5L7	Salmonella_phage	100.0	5.5e-50
QAZ05291.1|3225862_3226036_+	DUF2737 domain-containing protein	NA	A0A2H4FUQ1	Salmonella_phage	96.5	2.1e-25
QAZ06887.1|3226047_3226572_+	hypothetical protein	NA	Q5G8U6	Enterobacteria_phage	64.8	1.6e-39
QAZ05292.1|3226568_3227165_+	hypothetical protein	NA	A0A2H4FRZ0	Salmonella_phage	55.2	8.7e-42
QAZ05293.1|3227166_3227385_+	sugar acetyltransferase inhibitor	NA	C6ZR28	Salmonella_phage	97.2	7.0e-34
QAZ05294.1|3227388_3227622_+	hypothetical protein	NA	A0A1V0E5L6	Salmonella_phage	91.1	6.0e-15
QAZ05295.1|3227691_3228666_+	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	44.0	5.2e-28
QAZ05296.1|3228842_3229061_+	excisionase	NA	A0A1V0E5M4	Salmonella_phage	100.0	5.7e-36
QAZ05297.1|3229038_3230109_+|integrase	integrase	integrase	A0A1V0E5M7	Salmonella_phage	99.6	3.0e-154
3230175:3230199	attR	CGTTCAACTTAGTATAAAAAAGCAG	NA	NA	NA	NA
>prophage 10
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	4457686	4502462	4863437	plate,tail,tRNA	Burkholderia_phage(40.91%)	48	NA	NA
QAZ06384.1|4457686_4458685_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAZ06385.1|4458772_4460083_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ06386.1|4460329_4460845_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAZ06387.1|4460944_4461154_-	CsbD family protein	NA	NA	NA	NA	NA
QAZ06941.1|4461175_4461289_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ06388.1|4461285_4462611_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QAZ06389.1|4462789_4463398_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAZ06390.1|4463506_4463875_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAZ06391.1|4464045_4466466_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAZ06392.1|4466564_4467437_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAZ06393.1|4467450_4467948_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAZ06394.1|4468128_4469046_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAZ06395.1|4469209_4470568_-	maltoporin	NA	NA	NA	NA	NA
QAZ06396.1|4470656_4471766_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAZ06397.1|4472127_4473318_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAZ06398.1|4473449_4474994_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAZ06399.1|4475008_4475899_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAZ06400.1|4476064_4476475_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAZ06401.1|4476617_4478714_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAZ06402.1|4478713_4479451_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ06403.1|4479447_4480086_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAZ06404.1|4480149_4480392_-	outer membrane protein	NA	NA	NA	NA	NA
QAZ06405.1|4480835_4482485_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ06406.1|4482829_4484179_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAZ06407.1|4484309_4484657_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAZ06408.1|4485234_4485522_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAZ06409.1|4485524_4486130_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAZ06410.1|4486142_4486457_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAZ06411.1|4486616_4487072_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ06412.1|4487068_4487266_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAZ06413.1|4487255_4488683_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.8e-194
QAZ06414.1|4488682_4489207_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAZ06415.1|4489258_4489576_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAZ06416.1|4489535_4489664_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAZ06417.1|4489760_4492115_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.8	2.8e-67
QAZ06418.1|4492114_4493068_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAZ06419.1|4493067_4493277_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAZ06420.1|4493264_4494308_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
QAZ06421.1|4494317_4495040_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	2.3e-12
QAZ06422.1|4495048_4495288_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ06423.1|4495363_4495726_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
QAZ06424.1|4495722_4496652_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
QAZ06425.1|4496651_4498199_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	30.4	1.6e-50
QAZ06426.1|4498362_4498722_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAZ06427.1|4498712_4499828_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	5.3e-101
QAZ06428.1|4499820_4500453_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
QAZ06429.1|4500455_4501937_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.6e-52
QAZ06430.1|4501946_4502462_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	40.7	1.3e-33
>prophage 11
CP025230	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1924 chromosome, complete genome	4863437	4651294	4687012	4863437	tail,terminase,holin,head,portal,capsid,plate,integrase	Salmonella_phage(45.24%)	48	4651087:4651133	4682066:4682112
4651087:4651133	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ06549.1|4651294_4651711_+	hypothetical protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
QAZ06550.1|4651745_4651964_-	transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
QAZ06551.1|4652041_4653211_-	hypothetical protein	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
QAZ06552.1|4653207_4653693_-|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	94.4	5.9e-81
QAZ06553.1|4653704_4656146_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
QAZ06554.1|4656138_4656294_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
QAZ06555.1|4656290_4656626_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
QAZ06556.1|4656688_4657207_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
QAZ06557.1|4657222_4658410_-|tail	phage tail protein	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
QAZ06558.1|4658544_4659114_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	3.0e-92
QAZ06559.1|4659113_4660856_-	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	97.1	1.5e-267
QAZ06560.1|4660866_4661397_-|tail	phage tail protein I	tail	A0A0M4R4W9	Salmonella_phage	100.0	1.9e-104
QAZ06561.1|4661389_4662298_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
QAZ06562.1|4662304_4662652_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
QAZ06563.1|4662648_4663290_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
QAZ06564.1|4663366_4664743_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
QAZ06565.1|4664747_4665215_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
QAZ06566.1|4665207_4665675_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
QAZ06567.1|4665637_4665883_-|holin	holin	holin	S4TNY4	Salmonella_phage	73.1	5.5e-27
QAZ06568.1|4665782_4666196_-	protein lysB	NA	O80310	Escherichia_phage	59.9	8.4e-36
QAZ06569.1|4666192_4666702_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
QAZ06570.1|4666685_4666907_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
QAZ06571.1|4666897_4667101_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
QAZ06572.1|4667100_4667601_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
QAZ06573.1|4667698_4668457_-|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
QAZ06574.1|4668460_4669621_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
QAZ06575.1|4669652_4670516_-|capsid	capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
QAZ06576.1|4670680_4672450_+	oxidoreductase	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
QAZ06577.1|4672449_4673487_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
QAZ06578.1|4674007_4674199_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	100.0	1.1e-27
QAZ06579.1|4674197_4674629_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
QAZ06580.1|4674762_4675803_+	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
QAZ06581.1|4675799_4675997_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ06947.1|4676175_4678452_-	replication endonuclease	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
QAZ06582.1|4678441_4678717_-	hypothetical protein	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
QAZ06583.1|4678713_4678938_-	hypothetical protein	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
QAZ06584.1|4679239_4679464_-	DUF2732 domain-containing protein	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
QAZ06585.1|4679527_4680028_-	replication protein B	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
QAZ06586.1|4680197_4680470_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
QAZ06587.1|4680606_4680900_+	XRE family transcriptional regulator	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
QAZ06588.1|4680969_4681950_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
QAZ06589.1|4682134_4682635_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4682066:4682112	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ06590.1|4682785_4683484_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QAZ06591.1|4683480_4684854_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
QAZ06592.1|4684901_4685105_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ06593.1|4685225_4685621_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QAZ06594.1|4685632_4686385_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAZ06595.1|4686391_4687012_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
