The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	1152089	1214948	4774216	integrase,tail,tRNA,head,plate,capsid,portal	Salmonella_phage(95.56%)	64	1151922:1151970	1185956:1186004
1151922:1151970	attL	TATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QAZ08205.1|1152089_1152752_-	hypothetical protein	NA	E5G6K9	Salmonella_phage	100.0	3.4e-124
QAZ08206.1|1153304_1154321_-|integrase	integrase	integrase	E5G6L0	Salmonella_phage	100.0	5.0e-199
QAZ08207.1|1154323_1154956_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	51.4	6.3e-59
QAZ08208.1|1155077_1155320_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	97.5	6.8e-38
QAZ08209.1|1155353_1155863_+	hypothetical protein	NA	E5G6L3	Salmonella_phage	100.0	1.5e-87
QAZ11610.1|1155870_1156071_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	100.0	2.4e-33
QAZ08210.1|1156034_1156376_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	100.0	1.2e-56
QAZ08211.1|1156443_1156677_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	100.0	1.7e-33
QAZ08212.1|1156676_1156904_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
QAZ08213.1|1156900_1157758_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	100.0	6.8e-165
QAZ08214.1|1157754_1160169_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	100.0	0.0e+00
QAZ08215.1|1160321_1160510_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	100.0	1.4e-27
QAZ08216.1|1160448_1160754_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
QAZ08217.1|1160813_1161545_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08218.1|1161858_1163523_+	abortive phage infection protein	NA	E5G6M2	Salmonella_phage	100.0	0.0e+00
QAZ08219.1|1163626_1164667_-|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	100.0	5.5e-201
QAZ08220.1|1164666_1166433_-	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	97.1	0.0e+00
QAZ08221.1|1166575_1167409_+|capsid	capsid protein	capsid	E5G6M5	Salmonella_phage	100.0	3.1e-130
QAZ08222.1|1167425_1168487_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	100.0	2.1e-195
QAZ08223.1|1168490_1169141_+	hypothetical protein	NA	E5G6M7	Salmonella_phage	100.0	4.9e-115
QAZ08224.1|1169234_1169699_+|head	head completion/stabilization protein	head	E5G6M8	Salmonella_phage	100.0	9.9e-86
QAZ08225.1|1169698_1169902_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
QAZ08226.1|1169905_1170121_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
QAZ08227.1|1170101_1170617_+	lysozyme	NA	E5G6N1	Salmonella_phage	100.0	5.3e-96
QAZ08228.1|1170613_1171042_+	hypothetical protein	NA	E5G6N2	Salmonella_phage	100.0	2.3e-68
QAZ08229.1|1170971_1171175_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	92.5	8.3e-29
QAZ08230.1|1171137_1171569_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	100.0	1.7e-76
QAZ08231.1|1171561_1172008_+	phage virion morphogenesis protein	NA	E5G6N4	Salmonella_phage	99.3	2.3e-71
QAZ08232.1|1172009_1172861_-	hypothetical protein	NA	E5G6N5	Salmonella_phage	100.0	2.8e-163
QAZ08233.1|1172938_1173517_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	100.0	1.4e-108
QAZ08234.1|1173513_1173873_+|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	100.0	1.1e-60
QAZ08235.1|1173859_1174768_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	100.0	5.4e-160
QAZ08236.1|1174760_1175366_+|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	100.0	1.3e-117
QAZ08237.1|1175362_1177216_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	100.0	0.0e+00
QAZ08238.1|1177215_1177791_+|tail	tail fiber assembly protein	tail	E5G6P1	Salmonella_phage	100.0	4.3e-107
QAZ08239.1|1178660_1178885_+	Hin recombinase	NA	E5G6P5	Salmonella_phage	100.0	1.5e-34
QAZ08240.1|1178987_1180160_+|tail	phage tail protein	tail	E5G6P7	Salmonella_phage	99.7	3.4e-223
QAZ08241.1|1180169_1180685_+|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	100.0	9.3e-93
QAZ08242.1|1180739_1181042_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	100.0	1.5e-45
QAZ08243.1|1181056_1181176_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
QAZ08244.1|1181168_1183976_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	100.0	0.0e+00
QAZ08245.1|1183972_1184458_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	100.0	6.7e-77
QAZ08246.1|1184454_1185555_+	late control protein D	NA	E5G6Q3	Salmonella_phage	100.0	2.6e-201
QAZ11611.1|1185623_1185842_+	levansucrase regulator	NA	E5G6Q4	Salmonella_phage	100.0	2.1e-38
QAZ11612.1|1186393_1187557_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
1185956:1186004	attR	TATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QAZ08247.1|1187564_1189745_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
QAZ08248.1|1189741_1191151_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QAZ08249.1|1191215_1202690_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
QAZ11613.1|1203303_1203786_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QAZ08250.1|1203935_1204412_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
QAZ08251.1|1204401_1204692_+	RnfH family protein	NA	NA	NA	NA	NA
QAZ08252.1|1204857_1205196_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QAZ08253.1|1205344_1207006_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QAZ08254.1|1207091_1207970_-	NAD(+) kinase	NA	NA	NA	NA	NA
QAZ11614.1|1207901_1208096_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QAZ08255.1|1208092_1208683_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QAZ08256.1|1208717_1209323_-	cytoplasmic protein	NA	NA	NA	NA	NA
QAZ08257.1|1209443_1210685_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
QAZ08258.1|1210749_1211541_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QAZ08259.1|1211486_1211783_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ08260.1|1211706_1213068_+	signal recognition particle protein	NA	NA	NA	NA	NA
QAZ08261.1|1213320_1213569_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QAZ11615.1|1213587_1214136_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QAZ08262.1|1214180_1214948_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 2
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	1241954	1318688	4774216	integrase,holin,tRNA,tail,head,capsid,terminase,protease,transposase,lysis,portal	Salmonella_phage(37.93%)	94	1234035:1234051	1324535:1324551
1234035:1234051	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAZ08284.1|1241954_1242992_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAZ08285.1|1243107_1243797_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAZ08286.1|1244115_1244499_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAZ08287.1|1244560_1245148_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAZ11617.1|1245250_1246150_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ08288.1|1246167_1247502_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAZ08289.1|1247631_1248369_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QAZ08290.1|1248353_1249976_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAZ08291.1|1250060_1250240_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08292.1|1250400_1250976_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAZ08293.1|1251007_1251658_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAZ08294.1|1251657_1252614_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAZ08295.1|1252610_1253090_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QAZ08296.1|1253119_1253236_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ08297.1|1253587_1254817_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAZ08298.1|1254794_1255079_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAZ08299.1|1255119_1255359_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ08300.1|1255401_1256559_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAZ08301.1|1256521_1259449_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
QAZ08302.1|1259575_1259926_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAZ08303.1|1259947_1260106_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAZ08304.1|1260562_1261225_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ08305.1|1261224_1261611_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ08306.1|1261603_1262443_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAZ08307.1|1262501_1262897_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAZ08308.1|1262996_1263239_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAZ08309.1|1263198_1263573_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QAZ08310.1|1263664_1264549_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
QAZ08311.1|1264545_1265241_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAZ08312.1|1265254_1265953_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAZ08313.1|1266060_1266693_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08314.1|1266935_1267169_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAZ08315.1|1267285_1267534_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAZ08316.1|1267568_1268171_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAZ08317.1|1268170_1268377_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAZ08318.1|1268379_1268991_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAZ08319.1|1268987_1269128_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAZ08320.1|1269124_1269802_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAZ08321.1|1269798_1269984_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08322.1|1270074_1270638_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAZ08323.1|1271144_1271333_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08324.1|1271547_1272234_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAZ11618.1|1272509_1272839_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ08325.1|1272822_1273275_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAZ11619.1|1273292_1273745_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAZ08326.1|1273980_1274382_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAZ08327.1|1274416_1274611_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08328.1|1274668_1275214_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAZ08329.1|1275185_1277117_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAZ08330.1|1277100_1277304_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAZ08331.1|1277300_1278881_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAZ08332.1|1278870_1280367_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAZ08333.1|1280379_1280727_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAZ08334.1|1280781_1281810_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAZ08335.1|1281867_1282227_+	DNA packaging protein	NA	NA	NA	NA	NA
QAZ08336.1|1282237_1282621_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAZ08337.1|1282648_1283227_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAZ08338.1|1283275_1284526_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QAZ08339.1|1284514_1284916_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAZ08340.1|1284923_1285670_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAZ08341.1|1285720_1286116_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAZ08342.1|1286112_1286451_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAZ08343.1|1286422_1289518_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
QAZ08344.1|1289520_1289850_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAZ08345.1|1289859_1290558_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAZ08346.1|1290564_1291302_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAZ08347.1|1291199_1291847_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAZ08348.1|1291908_1295271_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAZ08349.1|1295309_1295552_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08350.1|1295605_1297978_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAZ08351.1|1297974_1298799_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAZ08352.1|1298788_1299367_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAZ08353.1|1299463_1299691_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ08354.1|1299797_1300010_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAZ11620.1|1300072_1300138_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08355.1|1300802_1301348_-|transposase	transposase	transposase	NA	NA	NA	NA
QAZ08356.1|1301594_1301732_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ08357.1|1302210_1303704_-	type III secretion system protein	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAZ08358.1|1304108_1305908_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAZ08359.1|1305924_1306899_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAZ08360.1|1307172_1307853_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAZ08361.1|1307849_1308755_+	GTPase Era	NA	NA	NA	NA	NA
QAZ08362.1|1308766_1309495_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAZ08363.1|1309506_1310238_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAZ08364.1|1310237_1310618_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAZ08365.1|1310729_1310990_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
QAZ08366.1|1311027_1311954_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAZ08367.1|1312069_1313266_+	MFS transporter	NA	NA	NA	NA	NA
QAZ08368.1|1313287_1314205_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QAZ08369.1|1314243_1315092_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ08370.1|1315207_1316101_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAZ08371.1|1316111_1317473_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAZ08372.1|1317476_1318112_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAZ08373.1|1318136_1318688_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1324535:1324551	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 3
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	1763131	1772302	4774216	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAZ08769.1|1763131_1764079_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
QAZ08770.1|1764062_1764794_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ08771.1|1764774_1764882_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ08772.1|1764941_1765673_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAZ08773.1|1765895_1767581_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QAZ08774.1|1767577_1768297_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ08775.1|1768343_1768811_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAZ08776.1|1768867_1769398_-	lipoprotein	NA	NA	NA	NA	NA
QAZ08777.1|1769569_1770028_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAZ08778.1|1770268_1772302_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 4
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	1840392	1850899	4774216		Enterobacteria_phage(37.5%)	10	NA	NA
QAZ08833.1|1840392_1841796_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QAZ08834.1|1841973_1842867_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAZ08835.1|1843243_1844329_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAZ08836.1|1844328_1845228_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAZ08837.1|1845275_1846154_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QAZ08838.1|1846154_1846706_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QAZ08839.1|1846711_1847686_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAZ08840.1|1847701_1848475_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAZ08841.1|1848479_1849559_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QAZ08842.1|1849585_1850899_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 5
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	1944032	1954649	4774216		Morganella_phage(25.0%)	12	NA	NA
QAZ08931.1|1944032_1944506_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
QAZ08932.1|1945152_1945443_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	5.2e-08
QAZ08933.1|1945814_1946612_-	protein MtfA	NA	NA	NA	NA	NA
QAZ08934.1|1947092_1947254_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08935.1|1947380_1947800_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAZ08936.1|1947802_1949071_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAZ08937.1|1949526_1949739_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAZ11643.1|1949749_1949938_+	cold-shock protein	NA	NA	NA	NA	NA
QAZ08938.1|1950197_1951409_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.0	1.3e-108
QAZ08939.1|1952058_1952370_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ08940.1|1952449_1953145_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	7.3e-08
QAZ08941.1|1953218_1954649_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 6
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	2059567	2094618	4774216	integrase,protease,tail	Salmonella_phage(25.0%)	36	2061325:2061340	2076361:2076376
QAZ09056.1|2059567_2060647_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
2061325:2061340	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
QAZ09057.1|2061780_2062068_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	92.7	8.1e-38
QAZ09058.1|2062855_2063023_-	lytic enzyme	NA	NA	NA	NA	NA
QAZ09059.1|2063087_2063276_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09060.1|2063748_2064630_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	74.9	1.4e-64
QAZ09061.1|2064726_2064927_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ09062.1|2065128_2065233_-|tail	phage tail protein	tail	NA	NA	NA	NA
QAZ09063.1|2065495_2065621_+	arsenic transporter	NA	NA	NA	NA	NA
QAZ09064.1|2065749_2066016_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09065.1|2066768_2067383_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
QAZ09066.1|2067392_2067551_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09067.1|2067683_2068598_-	protein PagO	NA	NA	NA	NA	NA
QAZ11648.1|2069215_2069416_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09068.1|2069706_2069955_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09069.1|2069892_2070261_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
QAZ09070.1|2071724_2071865_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09071.1|2072029_2072299_-	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
QAZ09072.1|2072345_2072540_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09073.1|2072671_2073091_+	N-acetyltransferase	NA	NA	NA	NA	NA
QAZ09074.1|2076163_2077177_-	acyltransferase	NA	NA	NA	NA	NA
2076361:2076376	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
QAZ09075.1|2077873_2078077_-	fimbrial protein	NA	NA	NA	NA	NA
QAZ09076.1|2078260_2078545_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09077.1|2080061_2080538_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09078.1|2080865_2081261_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
QAZ09079.1|2081944_2082667_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
QAZ09080.1|2082951_2083116_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09081.1|2083338_2083989_+	serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
QAZ09082.1|2084007_2084199_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
QAZ09083.1|2084309_2084549_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
QAZ11649.1|2084663_2086103_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
QAZ09084.1|2086180_2088820_-	MCE family protein	NA	NA	NA	NA	NA
QAZ09085.1|2088782_2090066_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ09086.1|2090107_2090692_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
QAZ09087.1|2090789_2091476_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
QAZ09088.1|2091495_2093544_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
QAZ09089.1|2093736_2094618_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 7
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	2863973	2950641	4774216	integrase,holin,tail,tRNA,head,capsid,terminase,protease,lysis,portal	Salmonella_phage(46.55%)	97	2888065:2888084	2961793:2961812
QAZ09851.1|2863973_2864654_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	9.8e-82
QAZ09852.1|2865272_2865932_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QAZ09853.1|2866018_2866348_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAZ09854.1|2866344_2866626_-	acylphosphatase	NA	NA	NA	NA	NA
QAZ09855.1|2866674_2867454_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ09856.1|2867479_2868028_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAZ09857.1|2868242_2869454_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAZ09858.1|2869511_2869829_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAZ09859.1|2869873_2870290_-	CoA-binding protein	NA	NA	NA	NA	NA
QAZ09860.1|2870460_2871123_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09861.1|2871217_2871676_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAZ09862.1|2871711_2873766_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	1.1e-19
QAZ09863.1|2873889_2874336_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAZ09864.1|2874354_2876508_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAZ09865.1|2876494_2877100_-	DNA transformation protein	NA	NA	NA	NA	NA
QAZ09866.1|2877316_2877826_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAZ09867.1|2878182_2879235_+	porin OmpA	NA	NA	NA	NA	NA
QAZ09868.1|2879306_2879759_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAZ09869.1|2879944_2881705_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAZ09870.1|2881773_2882292_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ09871.1|2882391_2882559_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAZ09872.1|2882814_2883378_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09873.1|2883374_2885015_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QAZ09874.1|2885019_2886273_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ09875.1|2886287_2888195_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
2888065:2888084	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QAZ09876.1|2888207_2890316_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAZ09877.1|2890414_2891524_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09878.1|2891520_2892063_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAZ09879.1|2892228_2893239_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAZ09880.1|2893446_2896059_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	4.8e-20
QAZ09881.1|2896485_2896677_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAZ09882.1|2896947_2897634_+	virulence protein	NA	NA	NA	NA	NA
QAZ09883.1|2897993_2898620_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	64.8	2.4e-66
QAZ09884.1|2899091_2900060_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	98.4	1.3e-191
QAZ09885.1|2900205_2900538_+|tail	tail assembly chaperone	tail	A0A1B0VCD0	Salmonella_phage	63.4	4.4e-19
QAZ09886.1|2901181_2901700_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	51.4	2.5e-45
QAZ09887.1|2901714_2904393_-	shikimate transporter	NA	A0A1B0VFW4	Salmonella_phage	62.8	1.0e-145
QAZ09888.1|2904446_2904689_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09889.1|2904727_2905603_-|tail	phage tail protein	tail	K7PKJ2	Enterobacteria_phage	78.8	2.6e-50
QAZ09890.1|2908149_2908854_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
QAZ09891.1|2908751_2909489_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	1.8e-113
QAZ09892.1|2909498_2910194_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
QAZ09893.1|2910283_2910817_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAZ09894.1|2910933_2911431_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAZ09895.1|2911529_2911862_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
QAZ09896.1|2911858_2914951_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	57.7	2.6e-270
QAZ09897.1|2914934_2915237_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	58.6	2.8e-25
QAZ09898.1|2915257_2915647_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	58.9	1.5e-31
QAZ09899.1|2915695_2916448_-|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	70.0	1.9e-94
QAZ09900.1|2916460_2916862_-|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	59.8	8.1e-44
QAZ09901.1|2916861_2917461_-|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	68.7	8.3e-69
QAZ09902.1|2917470_2917827_-|tail	phage tail protein	tail	K7P6U9	Enterobacteria_phage	58.5	1.8e-31
QAZ09903.1|2917837_2918212_-	DNA breaking-rejoining protein	NA	A0A2R9YJP4	Escherichia_phage	34.9	4.8e-06
QAZ09904.1|2918275_2919304_-|capsid	minor capsid protein E	capsid	A0A2I6TCE5	Escherichia_phage	58.4	2.4e-108
QAZ09905.1|2919358_2919706_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	4.6e-19
QAZ09906.1|2919705_2921220_-	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	51.8	2.1e-100
QAZ09907.1|2921209_2922796_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.5	3.2e-184
QAZ09908.1|2922792_2922996_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	80.0	1.0e-18
QAZ09909.1|2922979_2924914_-|terminase	terminase	terminase	E4WL19	Enterobacteria_phage	66.1	7.0e-258
QAZ09910.1|2924885_2925431_-|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
QAZ09911.1|2925444_2925660_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ11682.1|2925899_2926346_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	89.7	7.1e-65
QAZ09912.1|2926363_2926816_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.4e-79
QAZ11683.1|2926799_2927129_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ09913.1|2927404_2928091_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	99.6	1.8e-131
QAZ09914.1|2928451_2928901_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09915.1|2929036_2929162_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09916.1|2929335_2929653_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09917.1|2929719_2930517_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAZ09918.1|2930506_2930653_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAZ09919.1|2930649_2931261_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	4.2e-92
QAZ09920.1|2931263_2931470_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAZ09921.1|2931469_2932072_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAZ09922.1|2932154_2932376_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09923.1|2932487_2932721_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAZ09924.1|2933012_2933303_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09925.1|2933380_2933692_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAZ09926.1|2933688_2934036_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAZ09927.1|2934046_2934796_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAZ09928.1|2934798_2935782_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAZ09929.1|2935866_2936241_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAZ09930.1|2936206_2936446_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAZ09931.1|2936565_2936976_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAZ09932.1|2937025_2937286_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09933.1|2937278_2937437_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAZ09934.1|2937458_2937809_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAZ09935.1|2937935_2940863_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	98.9	0.0e+00
QAZ09936.1|2940825_2941983_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QAZ09937.1|2942025_2942265_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ09938.1|2942305_2942554_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAZ09939.1|2942598_2943891_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.0e-252
QAZ09940.1|2944085_2945288_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAZ09941.1|2945368_2946802_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAZ09942.1|2947047_2948262_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAZ09943.1|2948348_2948582_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09944.1|2948578_2949040_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ09945.1|2949240_2950641_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
2961793:2961812	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 8
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	3015071	3022384	4774216	integrase,protease	Ralstonia_phage(16.67%)	8	3009946:3009960	3021120:3021134
3009946:3009960	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QAZ09993.1|3015071_3015449_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	2.6e-20
QAZ09994.1|3015610_3015808_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ09995.1|3016020_3018297_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAZ09996.1|3018327_3018648_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAZ09997.1|3018971_3019193_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAZ09998.1|3019147_3019342_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ09999.1|3019322_3021269_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3021120:3021134	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QAZ10000.1|3021265_3022384_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 9
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	4372416	4411660	4774216	plate,tRNA,tail	Burkholderia_phage(53.33%)	40	NA	NA
QAZ11199.1|4372416_4373415_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAZ11200.1|4373502_4374813_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ11201.1|4375059_4375575_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAZ11202.1|4375673_4375883_-	CsbD family protein	NA	NA	NA	NA	NA
QAZ11742.1|4375904_4376018_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ11203.1|4376014_4377340_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QAZ11204.1|4377518_4378127_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAZ11205.1|4378235_4378604_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAZ11206.1|4378774_4381195_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAZ11207.1|4381293_4382166_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAZ11208.1|4382179_4382677_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAZ11209.1|4382857_4383775_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAZ11210.1|4383938_4385297_-	maltoporin	NA	NA	NA	NA	NA
QAZ11211.1|4385385_4386495_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAZ11212.1|4386856_4388047_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAZ11213.1|4388178_4389723_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAZ11214.1|4389737_4390628_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAZ11215.1|4390793_4391204_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAZ11216.1|4391346_4393443_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAZ11217.1|4393442_4394180_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ11218.1|4394176_4394815_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAZ11219.1|4394878_4395121_-	outer membrane protein	NA	NA	NA	NA	NA
QAZ11220.1|4395564_4397214_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ11221.1|4397558_4398908_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAZ11222.1|4399038_4399386_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAZ11223.1|4399961_4400249_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
QAZ11224.1|4400251_4400857_+	lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	60.4	6.5e-61
QAZ11225.1|4400869_4401184_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAZ11226.1|4401343_4401799_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ11227.1|4401795_4401993_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAZ11228.1|4401982_4403410_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAZ11229.1|4403409_4403934_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAZ11230.1|4403985_4404303_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAZ11231.1|4404262_4404391_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAZ11232.1|4405700_4407239_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	8.5e-49
QAZ11233.1|4407402_4407762_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAZ11234.1|4407752_4408868_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	6.9e-101
QAZ11235.1|4408860_4409493_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
QAZ11236.1|4409495_4410956_+	short-chain fatty acid transporter	NA	A0A0M3ULH6	Salmonella_phage	38.8	1.2e-76
QAZ11237.1|4410958_4411660_+	DUF4376 domain-containing protein	NA	X2KPE1	Enterobacteria_phage	38.6	2.1e-23
>prophage 10
CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	4774216	4560522	4596240	4774216	integrase,holin,tail,head,plate,capsid,terminase,portal	Salmonella_phage(45.24%)	48	4560315:4560361	4591294:4591340
4560315:4560361	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ11359.1|4560522_4560939_+	hypothetical protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
QAZ11360.1|4560973_4561192_-	transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
QAZ11361.1|4561269_4562439_-	hypothetical protein	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
QAZ11362.1|4562435_4562921_-|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	94.4	5.9e-81
QAZ11363.1|4562932_4565374_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
QAZ11364.1|4565366_4565522_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
QAZ11365.1|4565518_4565854_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
QAZ11366.1|4565916_4566435_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
QAZ11367.1|4566450_4567638_-|tail	phage tail protein	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
QAZ11368.1|4567772_4568342_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	3.0e-92
QAZ11369.1|4568341_4570084_-	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	97.1	1.5e-267
QAZ11370.1|4570094_4570625_-|tail	phage tail protein I	tail	A0A0M4R4W9	Salmonella_phage	100.0	1.9e-104
QAZ11371.1|4570617_4571526_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
QAZ11372.1|4571532_4571880_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
QAZ11373.1|4571876_4572518_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
QAZ11746.1|4572594_4573938_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
QAZ11374.1|4573975_4574443_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
QAZ11375.1|4574435_4574903_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
QAZ11376.1|4574865_4575111_-|holin	holin	holin	S4TNY4	Salmonella_phage	73.1	5.5e-27
QAZ11377.1|4575010_4575424_-	protein lysB	NA	O80310	Escherichia_phage	59.9	8.4e-36
QAZ11378.1|4575420_4575930_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
QAZ11379.1|4575913_4576135_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
QAZ11380.1|4576125_4576329_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
QAZ11381.1|4576328_4576829_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
QAZ11382.1|4576926_4577685_-|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
QAZ11383.1|4577688_4578849_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
QAZ11384.1|4578880_4579744_-|capsid	capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
QAZ11385.1|4579908_4581678_+	oxidoreductase	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
QAZ11386.1|4581677_4582715_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
QAZ11387.1|4583235_4583427_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	100.0	1.1e-27
QAZ11388.1|4583425_4583857_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
QAZ11389.1|4583990_4585031_+	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
QAZ11390.1|4585027_4585225_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ11391.1|4585403_4587680_-	replication endonuclease	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
QAZ11392.1|4587669_4587945_-	hypothetical protein	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
QAZ11393.1|4587941_4588166_-	hypothetical protein	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
QAZ11394.1|4588467_4588692_-	DUF2732 domain-containing protein	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
QAZ11395.1|4588755_4589256_-	replication protein B	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
QAZ11396.1|4589425_4589698_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
QAZ11397.1|4589834_4590128_+	XRE family transcriptional regulator	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
QAZ11398.1|4590197_4591178_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
QAZ11399.1|4591362_4591863_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4591294:4591340	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ11400.1|4592013_4592712_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QAZ11401.1|4592708_4594082_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
QAZ11402.1|4594129_4594333_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ11403.1|4594453_4594849_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QAZ11404.1|4594860_4595613_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAZ11405.1|4595619_4596240_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
