assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136115.1_ASM413611v1	CP025243	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 chromosome, complete genome	1	1006049-1007235	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,NGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,30,29	0	0	NA	NA	I-E:I-E:I-E	19,19,16	19	TypeI-E	cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	NA,NA|57aa|down_2|CP025243.1_1008508_1008679_+,NA|81aa|down_6|CP025243.1_1013213_1013456_-	NA|179aa|up_9|CP025243.1_994593_995130_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP025243.1_995126_995597_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP025243.1_995611_996118_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP025243.1_996137_996911_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP025243.1_996923_999623_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP025243.1_999702_1000290_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP025243.1_1000898_1001699_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025243.1_1001926_1003564_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025243.1_1003646_1004945_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025243.1_1005080_1005752_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP025243.1_1007332_1008130_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP025243.1_1008217_1008580_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP025243.1_1008508_1008679_+	NA	NA|600aa|down_3|CP025243.1_1009003_1010803_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025243.1_1010802_1012515_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025243.1_1012590_1013325_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP025243.1_1013213_1013456_-	NA	NA|318aa|down_7|CP025243.1_1013537_1014491_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|512aa|down_8|CP025243.1_1017931_1019467_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_9|CP025243.1_1019483_1020086_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2
GCA_004136115.1_ASM413611v1	CP025243	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 chromosome, complete genome	2	1023904-1025518	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,26	26	TypeI-E	cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	NA|81aa|up_8|CP025243.1_1013213_1013456_-,NA	NA|245aa|up_9|CP025243.1_1012590_1013325_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|up_8|CP025243.1_1013213_1013456_-	NA	NA|318aa|up_7|CP025243.1_1013537_1014491_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|512aa|up_6|CP025243.1_1017931_1019467_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP025243.1_1019483_1020086_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP025243.1_1020102_1021167_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP025243.1_1021176_1021902_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP025243.1_1021901_1022606_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP025243.1_1022605_1023523_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP025243.1_1023525_1023819_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP025243.1_1025532_1026579_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025243.1_1026829_1027738_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025243.1_1027747_1029187_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025243.1_1029173_1029779_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP025243.1_1029796_1030153_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025243.1_1030343_1030655_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025243.1_1030673_1031384_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025243.1_1031383_1031863_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025243.1_1031859_1032909_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025243.1_1032889_1033651_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004136115.1_ASM413611v1	CP025243	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 chromosome, complete genome	3	3013789-3013898	3	CRISPRCasFinder	no		cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTCGGGGATAACTATCCCCGTTTTC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	NA|49aa|up_9|CP025243.1_3009110_3009257_-,NA|69aa|up_7|CP025243.1_3009867_3010074_-,NA|74aa|up_5|CP025243.1_3010758_3010980_-,NA|97aa|up_3|CP025243.1_3011616_3011907_-,NA|87aa|down_3|CP025243.1_3015607_3015868_+,NA|53aa|down_4|CP025243.1_3015860_3016019_+,NA|100aa|down_5|CP025243.1_3016040_3016340_+	NA|49aa|up_9|CP025243.1_3009110_3009257_-	NA	NA|204aa|up_8|CP025243.1_3009253_3009865_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|69aa|up_7|CP025243.1_3009867_3010074_-	NA	NA|201aa|up_6|CP025243.1_3010073_3010676_-	pfam07105, DUF1367, Protein of unknown function (DUF1367)	NA|74aa|up_5|CP025243.1_3010758_3010980_-	NA	NA|78aa|up_4|CP025243.1_3011091_3011325_-	pfam06183, DinI, DinI-like family	NA|97aa|up_3|CP025243.1_3011616_3011907_-	NA	NA|104aa|up_2|CP025243.1_3011984_3012296_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|116aa|up_1|CP025243.1_3012292_3012640_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|250aa|up_0|CP025243.1_3012650_3013400_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|125aa|down_0|CP025243.1_3014448_3014823_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|80aa|down_1|CP025243.1_3014788_3015028_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|137aa|down_2|CP025243.1_3015147_3015558_+	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed	NA|87aa|down_3|CP025243.1_3015607_3015868_+	NA	NA|53aa|down_4|CP025243.1_3015860_3016019_+	NA	NA|100aa|down_5|CP025243.1_3016040_3016340_+	NA	NA|962aa|down_6|CP025243.1_3016466_3019352_+	PRK09709, PRK09709, exodeoxyribonuclease VIII	NA|386aa|down_7|CP025243.1_3019314_3020472_+	pfam03837, RecT, RecT family	NA|80aa|down_8|CP025243.1_3020514_3020754_+	pfam13269, DUF4060, Protein of unknown function (DUF4060)	NA|83aa|down_9|CP025243.1_3020794_3021043_+	pfam06806, DUF1233, Putative excisionase (DUF1233)
