The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	445190	478448	5299449	head,terminase,capsid,portal,protease,tRNA	uncultured_Caudovirales_phage(75.0%)	36	NA	NA
QBA58553.1|445190_446138_-|tRNA	Methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	37.2	2.2e-07
QBA58554.1|446152_446662_-	Peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	2.6e-18
QBA58555.1|446790_447915_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58556.1|447886_448360_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58557.1|448385_448928_+	DNA topoisomerase 1	NA	NA	NA	NA	NA
QBA58558.1|448932_449505_+	Threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
QBA58559.1|449508_450327_+	Shikimate dehydrogenase	NA	NA	NA	NA	NA
QBA58560.1|450323_450581_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58561.1|450556_451111_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
QBA58562.1|456906_457128_-	hypothetical protein	NA	NA	NA	NA	NA
QBA58563.1|457421_460532_-	multidrug efflux system protein AcrF	NA	NA	NA	NA	NA
QBA58564.1|460544_461684_-	multidrug efflux system protein AcrE	NA	NA	NA	NA	NA
QBA58565.1|462062_462713_+	putative acrEF/envCD operon repressor	NA	NA	NA	NA	NA
QBA58566.1|462988_464215_+	Integrase	NA	A0A2H4JB45	uncultured_Caudovirales_phage	62.2	1.8e-150
QBA58567.1|464307_465249_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58568.1|465430_465715_+	Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA	NA
QBA58569.1|465725_466505_+	Phage antirepressor protein KilAC domain protein	NA	Q8HA02	Enterobacteria_phage	51.5	6.2e-40
QBA58570.1|466628_466823_-	hypothetical protein	NA	NA	NA	NA	NA
QBA58571.1|466956_467226_+	hypothetical protein	NA	A0A2H4JGW3	uncultured_Caudovirales_phage	94.4	2.4e-44
QBA58572.1|467218_467407_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58573.1|467399_467714_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58574.1|467710_468079_+	hypothetical protein	NA	A0A2H4JCX7	uncultured_Caudovirales_phage	81.1	3.7e-51
QBA58575.1|468075_468441_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58576.1|468440_470576_+	hypothetical protein	NA	A0A1W6JPG0	Morganella_phage	62.4	3.4e-205
QBA58577.1|470918_471254_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58578.1|471302_471815_-	hypothetical protein	NA	NA	NA	NA	NA
QBA58579.1|472078_473245_+|capsid	major virion capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	95.9	9.8e-207
QBA58580.1|473296_473857_+|head,protease	Caudovirus prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	95.7	1.2e-98
QBA58581.1|473858_475100_+|portal	virion portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	96.5	1.0e-230
QBA58582.1|475096_475432_+|head	virion head closure protein, neck type 1	head	A0A2H4JHK5	uncultured_Caudovirales_phage	57.8	3.7e-26
QBA58583.1|475428_475728_+	virion neck adaptor, type 1	NA	A0A2H4JD08	uncultured_Caudovirales_phage	80.8	3.4e-39
QBA58584.1|475727_476171_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	91.8	2.8e-77
QBA58585.1|476163_476316_+	hypothetical protein	NA	A0A2H4JCY9	uncultured_Caudovirales_phage	88.0	2.4e-17
QBA58586.1|476297_476489_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58587.1|476446_476803_+|terminase	terminase DNA loader, small subunit	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	99.2	5.5e-60
QBA58588.1|476786_478448_+|terminase	terminase DNA loader, large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	98.0	0.0e+00
>prophage 2
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	2686703	2697590	5299449		Escherichia_phage(87.5%)	9	NA	NA
QBA60673.1|2686703_2689811_+	Beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
QBA60674.1|2689865_2691131_+	Lactose permease	NA	NA	NA	NA	NA
QBA60675.1|2691161_2692250_-	recombination protein F	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
QBA60676.1|2692336_2692597_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	97.7	3.5e-40
QBA60677.1|2692894_2693755_+	Ambler Class A beta lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
QBA60678.1|2693775_2694537_-	Glycerol-3-phosphate regulon repressor	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QBA60679.1|2694797_2695700_+	2-(hydroxymethyl)glutarate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	99.3	7.7e-159
QBA60680.1|2695711_2696977_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	99.5	6.6e-233
QBA60681.1|2696969_2697590_+	L-fuculose phosphate aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 3
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	2906348	2966542	5299449	head,terminase,capsid,portal,protease,plate,transposase,tail	uncultured_Caudovirales_phage(30.77%)	73	NA	NA
QBA60876.1|2906348_2908727_-|plate	Phage-related baseplate assembly protein	plate	A0A2H4JCD4	uncultured_Caudovirales_phage	33.8	9.2e-18
QBA60877.1|2908719_2911374_-	Chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	33.4	2.5e-96
QBA60878.1|2911638_2912130_-	Major exported protein	NA	NA	NA	NA	NA
QBA60879.1|2912134_2913841_-	Outer membrane porin F precursor	NA	NA	NA	NA	NA
QBA60880.1|2913837_2914527_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60881.1|2914523_2915867_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60882.1|2915876_2917421_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60883.1|2917463_2917955_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60884.1|2918800_2919049_+	DNA-damage-inducible protein I	NA	S5MQI1	Escherichia_phage	70.4	1.4e-25
QBA60885.1|2919271_2919556_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60886.1|2919633_2921121_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA60887.1|2921570_2921780_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60888.1|2921776_2922508_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60889.1|2922518_2925542_-	hypothetical protein	NA	A0A286S1P0	Klebsiella_phage	44.7	1.6e-22
QBA60890.1|2925597_2925795_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60891.1|2925794_2926661_-	hypothetical protein	NA	A0A2H4IYR0	uncultured_Caudovirales_phage	64.5	1.9e-34
QBA60892.1|2926660_2927434_-	hypothetical protein	NA	A0A2H4J1A9	uncultured_Caudovirales_phage	54.4	2.8e-77
QBA60893.1|2927430_2928627_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	72.9	3.9e-158
QBA60894.1|2928626_2928980_-	hypothetical protein	NA	A0A2H4J629	uncultured_Caudovirales_phage	80.3	2.3e-50
QBA60895.1|2928981_2929635_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	63.5	1.0e-59
QBA60896.1|2929688_2930255_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60897.1|2930297_2930480_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60898.1|2930869_2931892_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	54.2	9.2e-100
QBA60899.1|2931894_2932197_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	55.2	2.0e-26
QBA60900.1|2932197_2932797_-	hypothetical protein	NA	A0A2H4J1B3	uncultured_Caudovirales_phage	57.6	9.9e-54
QBA60901.1|2932796_2934800_-	Membrane-bound lytic murein transglycosylase D precursor	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	63.6	1.2e-247
QBA60902.1|2934789_2934942_-	hypothetical protein	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	88.0	7.6e-19
QBA60903.1|2934977_2935403_-	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	63.4	2.6e-40
QBA60904.1|2935406_2935847_-	hypothetical protein	NA	A0A0M5M1K6	Salmonella_phage	80.1	3.3e-62
QBA60905.1|2935857_2937003_-|tail	virion tail sheath protein	tail	A0A2H4J8G4	uncultured_Caudovirales_phage	76.9	6.3e-166
QBA60906.1|2937006_2937447_-|tail	virion tail completion protein, type 1	tail	A0A2H4J1A0	uncultured_Caudovirales_phage	51.7	1.6e-40
QBA60907.1|2937541_2937928_-|head	virion head closure protein, neck type 1	head	A0A2H4J1A4	uncultured_Caudovirales_phage	78.2	1.1e-48
QBA60908.1|2937927_2938434_-	virion neck protein Ne1	NA	NA	NA	NA	NA
QBA60909.1|2938430_2938850_-	virion neck adaptor, type 1	NA	A0A0M5M3S2	Salmonella_phage	60.7	3.3e-40
QBA60910.1|2938818_2939100_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60911.1|2939139_2940081_-|capsid	major virion capsid protein	capsid	A0A2H4J191	uncultured_Caudovirales_phage	77.1	1.7e-137
QBA60912.1|2940092_2940587_-	hypothetical protein	NA	A0A2H4JHM9	uncultured_Caudovirales_phage	62.7	4.2e-50
QBA60913.1|2940590_2941793_-	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	54.1	2.6e-106
QBA60914.1|2941844_2942378_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.3	2.9e-49
QBA60915.1|2942448_2943900_-|portal	virion portal protein	portal	A0A0M4S6U1	Salmonella_phage	68.8	3.8e-192
QBA60916.1|2944095_2945499_+|transposase	ISKpn21 transposase	transposase	NA	NA	NA	NA
QBA60917.1|2945527_2946160_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60918.1|2946420_2947821_-|terminase	terminase DNA loader, large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	9.4e-188
QBA60919.1|2947771_2948524_-	hypothetical protein	NA	A0A077KBY7	Edwardsiella_phage	66.0	4.0e-12
QBA60920.1|2948625_2948946_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60921.1|2949180_2949570_-	Putative bacteriophage protein	NA	A0A192Y6H8	Salmonella_phage	49.2	9.4e-21
QBA60922.1|2949566_2950097_-	Lysozyme RrrD	NA	K7PLY1	Enterobacteria_phage	77.1	2.7e-79
QBA60923.1|2950099_2950348_-	hypothetical protein	NA	NA	NA	NA	NA
QBA60924.1|2950753_2951536_-	Antitermination protein	NA	F1C595	Cronobacter_phage	76.8	7.2e-113
QBA60925.1|2951532_2952009_-	hypothetical protein	NA	A0A286N2Q1	Klebsiella_phage	100.0	1.8e-90
QBA60926.1|2952005_2952968_-	Zinc-binding domain of primase-helicase	NA	A0A286N2Q0	Klebsiella_phage	99.4	4.8e-183
QBA60927.1|2952969_2954628_-	reverse gyrase	NA	A0A286N2P9	Klebsiella_phage	96.0	0.0e+00
QBA60928.1|2954936_2955230_-	hypothetical protein	NA	A0A286S2B5	Klebsiella_phage	97.6	2.8e-38
QBA60929.1|2955204_2955426_-	helix-turn-helix protein	NA	A0A286S2C1	Klebsiella_phage	100.0	3.0e-32
QBA60930.1|2955523_2956192_+	putative HTH-type transcriptional regulator	NA	A0A286S2B2	Klebsiella_phage	99.5	2.4e-125
QBA60931.1|2956362_2956677_+	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	100.0	1.0e-49
QBA60932.1|2956669_2956858_+	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	100.0	4.6e-26
QBA60933.1|2957027_2957393_+	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	99.2	6.9e-58
QBA60934.1|2957385_2957640_+	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	97.6	3.1e-41
QBA60935.1|2957826_2958252_+	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	77.9	3.5e-53
QBA60936.1|2958248_2958443_+	hypothetical protein	NA	NA	NA	NA	NA
QBA60937.1|2958439_2959267_+	SPFH domain / Band 7 family protein	NA	Q8W654	Enterobacteria_phage	84.0	5.5e-111
QBA60938.1|2959311_2959890_+	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	99.0	2.8e-106
QBA60939.1|2959898_2960606_+	Phage regulatory protein Rha (Phage_pRha)	NA	A0A286S260	Klebsiella_phage	88.3	1.6e-111
QBA60940.1|2960595_2960820_+	hypothetical protein	NA	A0A286S2B3	Klebsiella_phage	89.2	3.1e-29
QBA60941.1|2960816_2961029_+	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	98.6	3.4e-33
QBA60942.1|2961025_2961505_+	hypothetical protein	NA	NA	NA	NA	NA
QBA60943.1|2961577_2961724_+	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	70.8	2.9e-15
QBA60944.1|2961734_2961926_+	hypothetical protein	NA	A0A0M4RTZ2	Salmonella_phage	73.8	3.9e-20
QBA60945.1|2961906_2962932_-	Integrase	NA	A0A0M4QX09	Salmonella_phage	83.6	3.4e-171
QBA60946.1|2963344_2963833_+|protease	Putative cysteine protease YraA	protease	NA	NA	NA	NA
QBA60947.1|2964031_2965564_-	HD domain protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	30.0	1.1e-21
QBA60948.1|2965780_2966542_-	3-oxoacyl-[acyl-carrier-protein] reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.5	2.4e-20
>prophage 4
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	2999475	3015624	5299449	transposase	Salmonella_phage(21.43%)	16	NA	NA
QBA60980.1|2999475_3000147_+	Putative SOS response-associated peptidase YedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.6	4.5e-79
QBA60981.1|3000261_3001161_+	FRG domain protein	NA	A0A1S6KZX9	Salmonella_phage	30.2	7.0e-19
QBA60982.1|3001236_3002502_-	DNA polymerase IV	NA	I6RSM4	Salmonella_phage	82.7	9.6e-208
QBA60983.1|3002503_3003010_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	57.5	1.8e-35
QBA60984.1|3003002_3004490_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA60985.1|3004912_3006400_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA60986.1|3008140_3008845_-|transposase	IS26 transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBA60987.1|3009305_3009593_+	hypothetical protein	NA	NA	NA	NA	NA
QBA60988.1|3009594_3010275_+	exo YqaJ-like viral recombinase domain protein	NA	A0A0M3ULE0	Salmonella_phage	91.2	8.2e-121
QBA60989.1|3010271_3010700_+	hypothetical protein	NA	M9NYX4	Enterobacteria_phage	80.3	7.5e-64
QBA60990.1|3010696_3011359_+	adenine specific DNA methyltransferase	NA	G8C7S6	Escherichia_phage	84.6	2.7e-105
QBA60991.1|3011355_3011670_+	excisionase	NA	K7PM28	Enterobacteria_phage	50.8	1.6e-10
QBA60992.1|3011566_3012796_-	Integrase	NA	M9NZA5	Enterobacteria_phage	51.9	1.1e-120
QBA60993.1|3012930_3013821_+	Peptide transport system permease protein SapC	NA	NA	NA	NA	NA
QBA60994.1|3013820_3014813_+	putative D,D-dipeptide transport ATP-binding protein DdpD	NA	G9BWD6	Planktothrix_phage	27.2	3.0e-07
QBA60995.1|3014814_3015624_+	Glutathione import ATP-binding protein GsiA	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	2.1e-14
>prophage 5
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	3137633	3145564	5299449		Pseudomonas_phage(50.0%)	6	NA	NA
QBA61111.1|3137633_3138899_-	DNA polymerase IV	NA	I6RSM4	Salmonella_phage	79.6	7.6e-197
QBA61112.1|3138901_3139321_-	LexA repressor	NA	A0A1W6JNS2	Morganella_phage	57.5	5.5e-35
QBA61113.1|3139399_3140887_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61114.1|3141309_3142797_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61115.1|3143219_3144707_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61116.1|3145321_3145564_+	DNA-damage-inducible protein I	NA	Q6UAW0	Klebsiella_phage	72.2	4.1e-27
>prophage 6
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	3395892	3490753	5299449	terminase,capsid,portal,protease,plate,tail,tRNA	Salmonella_phage(55.17%)	95	NA	NA
QBA61346.1|3395892_3397185_-|tRNA	Serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.7	7.3e-94
QBA61347.1|3397275_3398619_-	Replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.8	7.3e-81
QBA61348.1|3398627_3399239_-	Outer-membrane lipoprotein carrier protein precursor	NA	NA	NA	NA	NA
QBA61349.1|3399361_3403615_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.2	5.2e-88
QBA61350.1|3403750_3404245_-	Leucine-responsive regulatory protein	NA	NA	NA	NA	NA
QBA61351.1|3404750_3405746_+	Thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.0	3.3e-62
QBA61352.1|3405860_3407627_+	ATP-binding/permease protein CydD	NA	W8CYL7	Bacillus_phage	25.9	2.3e-21
QBA61353.1|3407627_3409349_+	Lipid A export ATP-binding/permease protein MsbA	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
QBA61354.1|3409393_3410095_+|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBA61355.1|3410448_3410667_+	Translation initiation factor IF-1	NA	NA	NA	NA	NA
QBA61356.1|3410787_3413067_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
QBA61357.1|3413097_3413415_-|protease	ATP-dependent Clp protease adapter protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
QBA61358.1|3413740_3413962_+	Cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
QBA61359.1|3414038_3415979_-	Macrolide export ATP-binding/permease protein MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
QBA61360.1|3415975_3417091_-	Macrolide-specific efflux protein MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
QBA61361.1|3417237_3418896_-	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
QBA61362.1|3419315_3420011_+	Aquaporin Z	NA	NA	NA	NA	NA
QBA61363.1|3420126_3421026_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61364.1|3421169_3422822_+	Hydroxylamine reductase	NA	NA	NA	NA	NA
QBA61365.1|3422832_3423801_+	NADH oxidoreductase hcr	NA	NA	NA	NA	NA
QBA61366.1|3424012_3424447_-	Putative oxidoreductase CatD	NA	NA	NA	NA	NA
QBA61367.1|3424598_3426317_+	Pyruvate dehydrogenase, ubiquinone	NA	NA	NA	NA	NA
QBA61368.1|3426355_3427357_+	Low specificity L-threonine aldolase	NA	NA	NA	NA	NA
QBA61369.1|3427367_3428810_+	short chain dehydrogenase	NA	NA	NA	NA	NA
QBA61370.1|3428897_3429911_+	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase	NA	NA	NA	NA	NA
QBA61371.1|3429907_3430738_-	N-acetylmuramoyl-L-alanine amidase AmiD precursor	NA	A0A1B0UZW5	Roseobacter_phage	31.6	4.1e-05
QBA61372.1|3430769_3431909_-	Phytochrome-like protein cph2	NA	NA	NA	NA	NA
QBA61373.1|3432302_3432467_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61374.1|3432786_3433302_+	putative lipoprotein YbjP precursor	NA	NA	NA	NA	NA
QBA61375.1|3433528_3434257_+	Arginine transport ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	37.1	1.2e-29
QBA61376.1|3434256_3435009_+	Putative ABC transporter arginine-binding protein 2 precursor	NA	NA	NA	NA	NA
QBA61377.1|3435015_3435732_+	Arginine ABC transporter permease protein ArtQ	NA	NA	NA	NA	NA
QBA61378.1|3435731_3436400_+	Arginine ABC transporter permease protein ArtM	NA	NA	NA	NA	NA
QBA61379.1|3436583_3437315_+	ABC transporter arginine-binding protein 1 precursor	NA	NA	NA	NA	NA
QBA61380.1|3437357_3438830_-	Alkaline phosphatase synthesis sensor protein PhoR	NA	W8CYF6	Bacillus_phage	31.8	7.9e-28
QBA61381.1|3438826_3439543_-	Transcriptional regulatory protein WalR	NA	W8CYM9	Bacillus_phage	36.9	2.1e-34
QBA61382.1|3439621_3440749_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	25.6	1.3e-19
QBA61383.1|3440790_3441279_-	Inner membrane protein YbjO	NA	NA	NA	NA	NA
QBA61384.1|3441336_3442182_-	Inner membrane ABC transporter permease protein YdcV	NA	NA	NA	NA	NA
QBA61385.1|3442178_3443132_-	Putrescine transport system permease protein PotH	NA	NA	NA	NA	NA
QBA61386.1|3443142_3444309_-	Spermidine/putrescine import ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	34.9	2.3e-30
QBA61387.1|3444439_3445552_-	Putrescine-binding periplasmic protein precursor	NA	NA	NA	NA	NA
QBA61388.1|3445900_3446380_-	Putative bacterial sensory transduction regulator	NA	NA	NA	NA	NA
QBA61389.1|3446468_3447371_-	Ribosomal protein S6 modification protein	NA	A0A1D7SR78	Cyanophage	35.3	2.0e-34
QBA61390.1|3448192_3448480_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61391.1|3448682_3448946_+	Glutaredoxin-1	NA	A0A2I7SAE2	Vibrio_phage	73.1	1.6e-27
QBA61392.1|3448952_3449336_-	Inner membrane protein YbjM	NA	NA	NA	NA	NA
QBA61393.1|3449602_3451288_+	Aspartate/alanine antiporter	NA	NA	NA	NA	NA
QBA61394.1|3451507_3451726_-	DNA-binding transcriptional regulator	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
QBA61395.1|3451817_3452918_-	Phage late control gene D protein (GPD)	NA	A0A1S6KZZ5	Salmonella_phage	87.4	4.9e-176
QBA61396.1|3452914_3453400_-	Phage P2 GpU	NA	E5G6Q2	Salmonella_phage	75.6	7.2e-63
QBA61397.1|3453396_3456024_-|tail	Phage-related minor tail protein	tail	E5FFG5	Burkholderia_phage	42.0	5.6e-117
QBA61398.1|3456150_3456450_-|tail	Phage tail protein E	tail	E5G6P9	Salmonella_phage	79.0	3.7e-33
QBA61399.1|3456502_3457018_-|tail	major virion tail protein	tail	E5G6P8	Salmonella_phage	85.4	1.3e-81
QBA61400.1|3457027_3458200_-|tail	virion tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	93.3	1.9e-210
QBA61401.1|3458338_3459415_-	hypothetical protein	NA	Q37842	Escherichia_phage	44.8	1.2e-25
QBA61402.1|3459444_3459648_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61403.1|3459644_3460376_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61404.1|3460379_3463331_-	hypothetical protein	NA	A0A2H4N7A3	Pectobacterium_phage	50.9	1.2e-06
QBA61405.1|3463332_3463932_-|tail	Phage tail protein (Tail_P2_I)	tail	A0A1S6L000	Salmonella_phage	60.5	1.3e-58
QBA61406.1|3463924_3464833_-|plate	Baseplate J-like protein	plate	E5G6N8	Salmonella_phage	66.9	7.6e-106
QBA61407.1|3464819_3465182_-	Gene 25-like lysozyme	NA	A0A1S6KZZ4	Salmonella_phage	84.7	5.8e-49
QBA61408.1|3465178_3465751_-|plate	Phage-related baseplate assembly protein	plate	E5G6N6	Salmonella_phage	72.3	4.7e-77
QBA61409.1|3465845_3466538_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61410.1|3466534_3466981_-	virion neck protein Ne1	NA	A0A1S6L001	Salmonella_phage	71.2	2.2e-50
QBA61411.1|3466973_3467405_-|tail	virion tail completion protein, type 1	tail	A0A1S6KZY0	Salmonella_phage	82.5	9.9e-64
QBA61412.1|3467500_3467929_-	Phage spanin Rz	NA	A0A1S6KZX8	Salmonella_phage	77.9	9.6e-51
QBA61413.1|3467925_3468309_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	42.0	2.1e-17
QBA61414.1|3468313_3468823_-	Lysozyme RrrD	NA	E5G6N1	Salmonella_phage	83.4	2.1e-81
QBA61415.1|3468803_3469019_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	90.1	3.6e-30
QBA61416.1|3469022_3469226_-	Phage Tail Protein X	NA	A0A1S6KZY4	Salmonella_phage	88.1	1.3e-29
QBA61417.1|3469225_3469690_-	virion neck adaptor, type 1	NA	A0A1S6KZW8	Salmonella_phage	89.0	8.4e-77
QBA61418.1|3469785_3470436_-|terminase	terminase DNA loader, small subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
QBA61419.1|3470439_3471498_-|capsid	major virion capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.1e-180
QBA61420.1|3471514_3472348_-|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	capsid	A0A1S6KZW9	Salmonella_phage	88.8	6.3e-123
QBA61421.1|3472490_3474257_+|terminase	terminase DNA loader, large subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.0	0.0e+00
QBA61422.1|3474256_3475282_+|portal	virion portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
QBA61423.1|3475343_3477086_-	AIPR protein	NA	NA	NA	NA	NA
QBA61424.1|3477361_3478039_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61425.1|3478153_3478387_-	DNA-damage-inducible protein I	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
QBA61426.1|3478397_3478694_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.1e-27
QBA61427.1|3478686_3480174_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61428.1|3480649_3483064_-	Bacteriophage replication gene A protein (GPA)	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
QBA61429.1|3483060_3483918_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.4	2.0e-156
QBA61430.1|3483914_3484142_-	hypothetical protein	NA	E5G6L7	Salmonella_phage	98.7	6.0e-36
QBA61431.1|3484141_3484375_-	hypothetical protein	NA	E5G6L6	Salmonella_phage	96.1	4.1e-32
QBA61432.1|3484442_3484784_-	hypothetical protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
QBA61433.1|3484747_3484948_-	hypothetical protein	NA	E5G6L4	Salmonella_phage	97.0	1.6e-32
QBA61434.1|3484955_3485465_-	Phage regulatory protein CII (CP76)	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
QBA61435.1|3485497_3485719_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61436.1|3485807_3486743_+	Bacteriophage CI repressor helix-turn-helix domain protein	NA	A0A1S6KZZ7	Salmonella_phage	39.9	1.8e-30
QBA61437.1|3486754_3487699_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61438.1|3487664_3487805_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61439.1|3487797_3489285_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61440.1|3489700_3490753_+	Integrase	NA	A0A218M4I3	Erwinia_phage	57.0	1.0e-106
>prophage 7
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	3902149	3981794	5299449	head,terminase,capsid,portal,lysis,transposase,tail,tRNA	Escherichia_phage(22.95%)	96	NA	NA
QBA61808.1|3902149_3902671_+|transposase	ISKpn1 transposase OrfA	transposase	A0A1B1P776	Bacillus_phage	33.5	1.3e-14
QBA61809.1|3902727_3903513_+|transposase	ISKpn1 transposase OrfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	67.7	3.3e-73
QBA61810.1|3903514_3903646_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61811.1|3903787_3904819_-	1,5-anhydro-D-fructose reductase	NA	NA	NA	NA	NA
QBA61812.1|3904828_3906001_-	1,5-anhydro-D-fructose reductase	NA	NA	NA	NA	NA
QBA61813.1|3905997_3906918_-	Inosose dehydratase	NA	NA	NA	NA	NA
QBA61814.1|3907489_3907915_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61815.1|3907991_3909509_-|tRNA	Lysine--tRNA ligase, heat inducible	tRNA	A0A1V0SAC0	Catovirus	36.3	9.5e-85
QBA61816.1|3909840_3911316_-	putative dipeptide and tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	29.0	6.9e-48
QBA61817.1|3911375_3913523_-	Lysine decarboxylase, inducible	NA	NA	NA	NA	NA
QBA61818.1|3913605_3914940_-	putative cadaverine/lysine antiporter	NA	NA	NA	NA	NA
QBA61819.1|3915305_3916874_-	Transcriptional activator CadC	NA	NA	NA	NA	NA
QBA61820.1|3917166_3917439_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61821.1|3917539_3918460_-	Lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	40.1	5.4e-51
QBA61822.1|3918970_3919837_+	Acetyltransferase (GNAT) family protein	NA	NA	NA	NA	NA
QBA61823.1|3919859_3920885_-	putative fimbrial-like protein YcbV precursor	NA	NA	NA	NA	NA
QBA61824.1|3920886_3923322_-	Outer membrane usher protein HtrE precursor	NA	NA	NA	NA	NA
QBA61825.1|3923332_3924028_-	Chaperone protein EcpD precursor	NA	NA	NA	NA	NA
QBA61826.1|3924086_3924647_-	Major fimbrial subunit precursor	NA	NA	NA	NA	NA
QBA61827.1|3925118_3925781_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61828.1|3925758_3926064_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61829.1|3926116_3927421_-	Citrate synthase	NA	NA	NA	NA	NA
QBA61830.1|3927931_3928102_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61831.1|3928180_3928582_-	5-hydroxyisourate hydrolase precursor	NA	NA	NA	NA	NA
QBA61832.1|3929933_3930251_-	DNA polymerase V subunit UmuD	NA	K7PGV5	Enterobacterial_phage	52.9	3.7e-23
QBA61833.1|3930250_3930490_-	hypothetical protein	NA	K7P7N3	Enterobacteria_phage	50.6	6.1e-15
QBA61834.1|3930567_3932055_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA61835.1|3932504_3932714_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61836.1|3932710_3933442_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61837.1|3933445_3936433_-	hypothetical protein	NA	A0A286S1P0	Klebsiella_phage	50.0	2.1e-19
QBA61838.1|3936519_3938997_-	hypothetical protein	NA	F1C5A7	Cronobacter_phage	45.6	2.7e-198
QBA61839.1|3938983_3939379_-	hypothetical protein	NA	F1C5F2	Cronobacter_phage	54.0	8.0e-36
QBA61840.1|3939375_3939846_-	hypothetical protein	NA	R9TPR6	Aeromonas_phage	41.0	2.5e-28
QBA61841.1|3939845_3940322_-	hypothetical protein	NA	A0A2P1MXB5	Escherichia_phage	49.7	3.0e-37
QBA61842.1|3940364_3943811_-	Tail length tape measure protein	NA	Q5G8W8	Enterobacteria_phage	48.6	1.4e-163
QBA61843.1|3943903_3944407_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61844.1|3944534_3945320_-	hypothetical protein	NA	A0A2L1IV39	Escherichia_phage	59.7	1.9e-84
QBA61845.1|3945385_3946099_-	hypothetical protein	NA	H6WRU8	Salmonella_phage	50.2	3.9e-49
QBA61846.1|3946088_3946259_-	Arc-like DNA binding domain protein	NA	I6R9A8	Salmonella_phage	87.0	6.1e-17
QBA61847.1|3946358_3946718_+	Arc-like DNA binding domain protein	NA	A0A0P0ZBD1	Stx2-converting_phage	47.5	3.8e-16
QBA61848.1|3946734_3947502_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61849.1|3947498_3947753_-	hypothetical protein	NA	K7PM89	Enterobacteria_phage	73.0	6.7e-20
QBA61850.1|3947755_3948511_-	KilA-N domain protein	NA	K7PGT4	Enterobacteria_phage	51.0	2.4e-60
QBA61851.1|3948686_3949364_-	hypothetical protein	NA	F1C5E8	Cronobacter_phage	57.9	4.8e-73
QBA61852.1|3949416_3950169_-	Bacterial Ig-like domain (group 2)	NA	G0ZNE6	Cronobacter_phage	42.1	5.8e-43
QBA61853.1|3950237_3950630_-|tail	virion tail completion protein, type 1	tail	G0ZNE4	Cronobacter_phage	52.7	5.1e-35
QBA61854.1|3950626_3951052_-	virion neck protein Ne1	NA	R9TPP7	Aeromonas_phage	47.9	5.1e-28
QBA61855.1|3951054_3951417_-|head	virion head closure protein, neck type 1	head	A0A173GCE0	Salmonella_phage	45.0	1.8e-18
QBA61856.1|3951589_3951970_-	virion neck adaptor, type 1	NA	F1C5E2	Cronobacter_phage	55.3	5.3e-29
QBA61857.1|3951972_3952212_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61858.1|3952222_3953317_-|capsid	major virion capsid protein	capsid	F1C5E1	Cronobacter_phage	62.8	1.7e-123
QBA61859.1|3953328_3953757_-	hypothetical protein	NA	F1C5E0	Cronobacter_phage	60.8	1.6e-42
QBA61860.1|3953760_3955146_-	hypothetical protein	NA	F1C5D9	Cronobacter_phage	60.0	2.3e-154
QBA61861.1|3955218_3955695_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61862.1|3955736_3956741_-	Phage Mu protein F like protein	NA	F1C5D8	Cronobacter_phage	69.7	9.0e-116
QBA61863.1|3956715_3958137_-|portal	virion portal protein	portal	F1C5D7	Cronobacter_phage	57.1	9.6e-148
QBA61864.1|3958149_3959622_-|terminase	terminase DNA loader, large subunit	terminase	A0A1W6JNY3	Morganella_phage	82.5	1.3e-248
QBA61865.1|3959621_3960224_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	80.9	5.4e-76
QBA61866.1|3960594_3960924_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61867.1|3961029_3961494_-|lysis	Bacteriophage lysis protein	lysis	Q76H63	Enterobacteria_phage	73.2	2.4e-55
QBA61868.1|3961490_3962021_-	Lysozyme RrrD	NA	G9L6J6	Escherichia_phage	78.5	6.0e-79
QBA61869.1|3962023_3962272_-	Lysis protein S	NA	NA	NA	NA	NA
QBA61870.1|3963181_3963871_-	Phage antitermination protein Q	NA	I6PDF8	Cronobacter_phage	54.5	1.4e-56
QBA61871.1|3963867_3964398_-	AP2 domain protein	NA	A0A193GYW9	Enterobacter_phage	43.1	5.2e-30
QBA61872.1|3964390_3964528_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61873.1|3964524_3965160_-	Bacteriophage Lambda NinG protein	NA	M9NYX8	Enterobacteria_phage	77.9	2.7e-81
QBA61874.1|3965152_3965323_-	prophage protein NinE	NA	G8C7V4	Escherichia_phage	73.2	1.3e-14
QBA61875.1|3965322_3965778_-	hypothetical protein	NA	K7P7B8	Enterobacteria_phage	69.5	8.0e-56
QBA61876.1|3966030_3966279_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61877.1|3966278_3966926_-	hypothetical protein	NA	A5LH60	Enterobacteria_phage	32.6	4.5e-12
QBA61878.1|3966922_3967099_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61879.1|3967098_3967941_-	hypothetical protein	NA	A0A2H4FRZ0	Salmonella_phage	60.8	1.8e-29
QBA61880.1|3967937_3968051_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61881.1|3968047_3968554_-	hypothetical protein	NA	A0A0A6Z565	Enterobacter_phage	59.6	3.0e-27
QBA61882.1|3968550_3968844_-	hypothetical protein	NA	O48423	Enterobacteria_phage	65.6	3.3e-26
QBA61883.1|3968843_3970274_-	Replicative DNA helicase	NA	Q9MCT4	Escherichia_phage	66.7	2.6e-185
QBA61884.1|3970263_3971163_-	hypothetical protein	NA	F1C5C3	Cronobacter_phage	54.9	5.4e-88
QBA61885.1|3971155_3971302_-	hypothetical protein	NA	NA	NA	NA	NA
QBA61886.1|3971387_3971609_-	Bacteriophage CII protein	NA	G8EYH8	Enterobacteria_phage	41.7	6.9e-05
QBA61887.1|3971649_3971883_-	hypothetical protein	NA	G8C7U2	Escherichia_phage	50.7	4.3e-13
QBA61888.1|3972010_3972700_+	HTH-type transcriptional regulator PrtR	NA	G8C7U1	Escherichia_phage	52.2	4.3e-61
QBA61889.1|3973050_3973266_+	hypothetical protein	NA	B5WZV1	Pseudomonas_phage	48.6	1.6e-09
QBA61890.1|3973262_3973373_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61891.1|3973365_3973560_+	hypothetical protein	NA	NA	NA	NA	NA
QBA61892.1|3973648_3973933_+	hypothetical protein	NA	G8C7T1	Escherichia_phage	62.8	8.0e-30
QBA61893.1|3973948_3974794_+	RecT family protein	NA	A0A1I9KF88	Aeromonas_phage	59.2	6.9e-69
QBA61894.1|3974790_3975471_+	YqaJ-like viral recombinase domain protein	NA	A0A0M3ULE0	Salmonella_phage	93.4	7.9e-124
QBA61895.1|3975467_3975626_+	hypothetical protein	NA	A0A0N7CHV0	Escherichia_phage	60.8	3.0e-10
QBA61896.1|3975622_3976279_+	hypothetical protein	NA	G8C7S6	Escherichia_phage	87.5	2.7e-113
QBA61897.1|3976275_3977043_+	hypothetical protein	NA	D5LH17	Escherichia_phage	53.4	1.7e-66
QBA61898.1|3977039_3977258_+	hypothetical protein	NA	A0A1I9LJM7	Stx_converting_phage	47.2	1.2e-09
QBA61899.1|3977259_3977475_+	hypothetical protein	NA	A0A0K2FI84	Escherichia_phage	52.9	4.0e-13
QBA61900.1|3977688_3978852_+	Integrase	NA	G8C7S0	Escherichia_phage	87.3	3.3e-202
QBA61901.1|3979282_3980149_+	Bifunctional protein FolD protein	NA	A0A249XZQ2	Enterococcus_phage	34.8	1.3e-30
QBA61902.1|3980150_3980363_+	ribosome-associated protein	NA	NA	NA	NA	NA
QBA61903.1|3980408_3981794_-|tRNA	Cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.4	3.5e-46
>prophage 8
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	4191349	4203003	5299449	integrase	Enterobacteria_phage(70.0%)	13	4191799:4191813	4214856:4214870
QBA62106.1|4191349_4192453_+	Glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	4.8e-62
4191799:4191813	attL	CAATCTCTCCGCGCT	NA	NA	NA	NA
QBA62107.1|4192463_4193717_+	Gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	44.9	8.9e-89
QBA62108.1|4194069_4195260_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	62.7	6.4e-145
QBA62109.1|4195247_4196198_+	partitioning protein	NA	A0A1X9IGI7	Lactococcus_phage	27.1	1.2e-13
QBA62110.1|4196197_4196623_+	hypothetical protein	NA	NA	NA	NA	NA
QBA62111.1|4197191_4197758_-	Phage polarity suppression protein (Psu)	NA	Q7M2A1	Enterobacteria_phage	64.3	1.5e-59
QBA62112.1|4197775_4198021_-	DNA-binding transcriptional regulator	NA	Q7M294	Enterobacteria_phage	58.0	1.9e-19
QBA62113.1|4198017_4198755_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	60.7	9.0e-73
QBA62114.1|4199296_4199563_+	Prophage CP4-57 regulatory protein (AlpA)	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
QBA62115.1|4199922_4200117_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	85.5	3.2e-22
QBA62116.1|4200113_4200341_+	hypothetical protein	NA	NA	NA	NA	NA
QBA62117.1|4200337_4200658_+	hypothetical protein	NA	NA	NA	NA	NA
QBA62118.1|4200669_4203003_+	DNA primase TraC	NA	Q7M2A8	Enterobacteria_phage	82.2	0.0e+00
4214856:4214870	attR	CAATCTCTCCGCGCT	NA	NA	NA	NA
>prophage 9
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	4671247	4677072	5299449		Enterobacteria_phage(100.0%)	8	NA	NA
QBA62537.1|4671247_4673581_-	DNA primase TraC	NA	Q7M2A8	Enterobacteria_phage	83.9	0.0e+00
QBA62538.1|4673595_4673916_-	hypothetical protein	NA	NA	NA	NA	NA
QBA62539.1|4673912_4674140_-	hypothetical protein	NA	NA	NA	NA	NA
QBA62540.1|4674136_4674331_-	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	85.5	7.2e-22
QBA62541.1|4674681_4674948_-	Prophage CP4-57 regulatory protein (AlpA)	NA	Q7M299	Enterobacteria_phage	71.6	2.0e-30
QBA62542.1|4675508_4676246_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	59.4	1.1e-70
QBA62543.1|4676242_4676488_+	DNA-binding transcriptional regulator	NA	Q7M294	Enterobacteria_phage	56.8	5.5e-19
QBA62544.1|4676505_4677072_+	Phage polarity suppression protein (Psu)	NA	Q7M2A1	Enterobacteria_phage	63.8	9.7e-59
>prophage 10
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	5299449	4869485	4874647	5299449		Escherichia_phage(33.33%)	7	NA	NA
QBA62720.1|4869485_4870244_+	Integral membrane protein TerC family protein	NA	W8EBD0	Pseudomonas_phage	42.2	4.3e-30
QBA62721.1|4870389_4871307_+	Curved DNA-binding protein	NA	A0A1V0SCV5	Indivirus	42.2	2.8e-07
QBA62722.1|4871306_4871612_+	Chaperone modulatory protein CbpM	NA	NA	NA	NA	NA
QBA62723.1|4871780_4872302_+	Transposase	NA	A0A1B1P776	Bacillus_phage	33.5	1.3e-14
QBA62724.1|4872358_4873144_+	Integrase core domain protein	NA	A0A2I6AZV9	Macacine_betaherpesvirus	67.7	3.3e-73
QBA62725.1|4873309_4873681_-	Plasmid stability protein	NA	A0A222YWJ6	Escherichia_phage	53.7	2.8e-22
QBA62726.1|4873690_4874647_-	Plasmid segregation protein ParM	NA	A0A222YXF2	Escherichia_phage	78.0	1.3e-143
>prophage 1
CP035536	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-1, complete sequence	185957	6210	43185	185957	integrase,transposase,holin	Shigella_phage(15.79%)	36	5540:5556	37915:37931
5540:5556	attL	CTCCAGCGCCTTTTGCT	NA	NA	NA	NA
QBA57785.1|6210_6606_+|transposase	ISEcl1 transposase, OrfA	transposase	Q76S41	Shigella_phage	75.4	1.4e-43
QBA57786.1|6563_7445_+|transposase	ISEcl1-like transposase, OrfB	transposase	Q9ZXG3	Shigella_phage	63.2	1.2e-100
QBA57787.1|7829_8333_+|transposase	IS1 transposase OrfB	transposase	U5P0U6	Shigella_phage	93.2	1.6e-84
QBA57788.1|8484_10482_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	25.9	9.7e-21
QBA57789.1|10544_11822_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57790.1|11856_12048_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57791.1|12804_14220_-	diguanylate cyclase	NA	NA	NA	NA	NA
QBA57792.1|14255_14384_-	hypothetical protein	NA	NA	NA	NA	NA
QBA57793.1|14860_15118_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57794.1|15894_16713_-|transposase	IS903B-like transposase	transposase	Q9MCT5	Escherichia_phage	98.5	4.2e-156
QBA57795.1|17115_18063_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	1.8e-12
QBA57796.1|19197_19938_+|integrase	integrase	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	5.4e-25
QBA57797.1|20654_21665_-	replication initiation protein RepA, IncFIB family	NA	J9Q7H0	Salmonella_phage	55.9	8.8e-87
QBA57798.1|22416_23583_+	plasmid-partitioning protein ParA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.7	1.4e-224
QBA57799.1|23582_24554_+	plasmid-partitioning protein ParB	NA	I3WF22	Macacine_betaherpesvirus	86.6	4.1e-150
QBA57800.1|24553_25516_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57801.1|25444_25777_-	hypothetical protein	NA	NA	NA	NA	NA
QBA57802.1|26050_26335_+|transposase	IS609 transposase OrfA	transposase	A0A1W6JP07	Morganella_phage	86.8	1.0e-40
QBA57803.1|26331_27189_+|transposase	IS609 transposase OrfB	transposase	A0A1B0VCD8	Salmonella_phage	80.9	1.0e-128
QBA57804.1|27505_28777_-	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.7	5.6e-155
QBA57805.1|28776_29202_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	49.6	8.3e-31
QBA57806.1|29302_30523_+|transposase	ISKox3 transposase	transposase	NA	NA	NA	NA
QBA57807.1|30931_32416_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA57808.1|32649_32880_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57809.1|33400_33826_+	antirestriction protein	NA	NA	NA	NA	NA
QBA57810.1|34062_34317_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	50.0	1.2e-11
QBA57811.1|34351_34669_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57812.1|35450_35678_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57813.1|35769_36000_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57814.1|36051_37407_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57815.1|37454_38018_+	SAM-dependent methyltransferase	NA	A8HNV9	Thalassomonas_phage	34.1	1.3e-18
37915:37931	attR	AGCAAAAGGCGCTGGAG	NA	NA	NA	NA
QBA57816.1|38793_39336_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	76.7	6.0e-50
QBA57817.1|39384_39633_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57818.1|39702_41739_+	ParB-like partition protein	NA	G8DH78	Emiliania_huxleyi_virus	25.4	6.9e-22
QBA57819.1|41805_42189_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
QBA57820.1|41928_43185_-|transposase	ISKpn28 transposase	transposase	NA	NA	NA	NA
>prophage 2
CP035536	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-1, complete sequence	185957	55209	118054	185957	transposase	Escherichia_phage(30.0%)	52	NA	NA
QBA57842.1|55209_56472_-|transposase	ISEcp1 transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
QBA57843.1|57138_58563_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
QBA57844.1|58676_59261_+	conjugal transfer protein TraV	NA	NA	NA	NA	NA
QBA57845.1|59392_59803_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57846.1|59908_60127_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57847.1|60127_60457_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57848.1|60523_60928_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57849.1|61311_61704_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57850.1|61775_64418_+	conjugal transfer ATP-binding protein TraC	NA	NA	NA	NA	NA
QBA57851.1|64414_64804_+	conjugal transfer protein TrbI	NA	NA	NA	NA	NA
QBA57852.1|64803_65439_+	conjugal transfer pilus assembly protein TraW	NA	NA	NA	NA	NA
QBA57853.1|65473_65875_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57854.1|65871_66861_+	conjugal transfer protein TraU	NA	NA	NA	NA	NA
QBA57855.1|66873_67512_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
QBA57856.1|67570_69526_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
QBA57857.1|69557_69812_+	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
QBA57858.1|69789_70038_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57859.1|70050_70377_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57860.1|70397_71150_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
QBA57861.1|71160_71400_+	conjugal transfer protein TraQ	NA	NA	NA	NA	NA
QBA57862.1|71371_71929_+	conjugal transfer protein TrbB	NA	NA	NA	NA	NA
QBA57863.1|71974_72418_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
QBA57864.1|72407_73775_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
QBA57865.1|73774_76597_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA	NA
QBA57866.1|76619_77222_+	conjugal transfer protein TraS	NA	NA	NA	NA	NA
QBA57867.1|77472_78204_+	conjugal transfer protein TraT	NA	NA	NA	NA	NA
QBA57868.1|78395_79085_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57869.1|79211_81521_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
QBA57870.1|81520_86779_+	conjugal transfer protein TraI	NA	A0A1P8DII4	Virus_Rctr197k	33.3	5.2e-05
QBA57871.1|86868_87594_+	conjugal transfer protein TraX	NA	NA	NA	NA	NA
QBA57872.1|87665_88259_+	conjugal transfer fertility inhibition protein FinO	NA	NA	NA	NA	NA
QBA57873.1|88425_89022_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57874.1|89194_90175_+|transposase	ISEc68 transposase	transposase	Q38213	Escherichia_phage	80.9	1.4e-153
QBA57875.1|90355_90631_+|transposase	IS1 transposase, OrfA	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
QBA57876.1|91357_92881_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	38.9	2.4e-88
QBA57877.1|92870_94109_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
QBA57878.1|94105_94789_+	YecA family protein	NA	NA	NA	NA	NA
QBA57879.1|94841_98126_+	type I restriction-modification system subunit R	NA	A0A220A398	Liberibacter_phage	27.6	4.3e-66
QBA57880.1|98122_98878_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
QBA57881.1|99737_101189_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57882.1|101181_103224_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57883.1|103410_109146_+	DNA helicase UvrD	NA	NA	NA	NA	NA
QBA57884.1|109168_109339_+	hypothetical protein	NA	NA	NA	NA	NA
QBA57885.1|109599_110004_+|transposase	ISKpn24 transposase, OrfA	transposase	A0A0P0ZCV4	Stx2-converting_phage	98.5	4.3e-69
QBA57886.1|110000_110348_+|transposase	ISKpn24 transposase, OrfB	transposase	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
QBA57887.1|111667_113041_-	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	99.1	5.1e-53
QBA57888.1|113144_113993_-	hypothetical protein	NA	NA	NA	NA	NA
QBA57889.1|114201_114390_-	hypothetical protein	NA	NA	NA	NA	NA
QBA57890.1|114503_115088_-	macrolide resistance transcriptional repressor protein MphR(A)	NA	NA	NA	NA	NA
QBA57891.1|115087_116326_-	major facilitator family transporter	NA	NA	NA	NA	NA
QBA57892.1|116322_117228_-	macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
QBA57893.1|117349_118054_-|transposase	IS26 transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 1
CP035537	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-2, complete sequence	108500	47351	82106	108500	transposase	Escherichia_phage(30.77%)	32	NA	NA
QBA58014.1|47351_48572_+|transposase	ISKox3 transposase	transposase	NA	NA	NA	NA
QBA58015.1|48672_49893_+|transposase	ISKox3 transposase	transposase	NA	NA	NA	NA
QBA58016.1|49952_50375_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	51.5	3.1e-30
QBA58017.1|50374_51646_+	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.0	6.1e-154
QBA58018.1|51781_52753_-	plasmid partitioning protein ParB	NA	Q1MVJ4	Enterobacteria_phage	68.9	1.4e-113
QBA58019.1|52749_53955_-	plasmid partitioning protein ParA	NA	Q1MVJ3	Enterobacteria_phage	89.2	1.1e-205
QBA58020.1|54317_54959_+	serine recombinase	NA	A0A1V0E035	Clostridioides_phage	31.2	5.7e-07
QBA58021.1|54996_55344_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58022.1|55333_55687_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58023.1|55723_56662_+|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	53.4	2.1e-74
QBA58024.1|56693_57542_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	55.6	1.3e-67
QBA58025.1|57735_58644_+	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	75.9	3.9e-118
QBA58026.1|58640_59504_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.4	7.0e-85
QBA58027.1|59515_60220_+|transposase	IS26 transposase	transposase	A0A077SL39	Escherichia_phage	99.6	6.9e-139
QBA58028.1|62166_62598_+	entry exclusion protein TraS	NA	NA	NA	NA	NA
QBA58029.1|63481_65719_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
QBA58030.1|65718_70959_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
QBA58031.1|70960_71698_+	conjugal transfer pilin acetylase TraX	NA	NA	NA	NA	NA
QBA58032.1|71764_72484_+	conjugal transfer fertility inhibition protein FinO	NA	NA	NA	NA	NA
QBA58033.1|72476_73268_+	DsbA oxidoreductase	NA	NA	NA	NA	NA
QBA58034.1|73415_73961_+	endonuclease	NA	A0A1B2LRT6	Wolbachia_phage	33.1	1.0e-20
QBA58035.1|74112_74391_+	replication protein RepB	NA	NA	NA	NA	NA
QBA58036.1|74609_74687_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
QBA58037.1|74679_75543_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
QBA58038.1|76401_76548_-	hypothetical protein	NA	NA	NA	NA	NA
QBA58039.1|76686_77535_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58040.1|77594_77879_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58041.1|77967_78261_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58042.1|78275_78866_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58043.1|78892_79474_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58044.1|80171_81710_-|transposase	ISKpn24 transposase, OrfC	transposase	A0A0P0ZEB3	Stx2-converting_phage	94.3	5.1e-280
QBA58045.1|81758_82106_-|transposase	ISKpn24 transposase, OrfB	transposase	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
>prophage 1
CP035538	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-3, complete sequence	48698	261	9884	48698	integrase	Escherichia_phage(42.86%)	9	5025:5038	15214:15227
QBA58071.1|261_1749_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
QBA58072.1|2154_2586_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	53.3	1.6e-29
QBA58073.1|2585_3857_+	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.3	4.9e-151
QBA58074.1|3938_4913_-	plasmid partitioning protein ParB	NA	Q38420	Escherichia_phage	54.4	2.6e-88
QBA58075.1|4912_6118_-	plasmid partitioning protein ParA	NA	A0A077SL49	Escherichia_phage	69.6	2.4e-163
5025:5038	attL	GCTGGATTTGCTGA	NA	NA	NA	NA
QBA58076.1|6532_6802_+	hypothetical protein	NA	NA	NA	NA	NA
QBA58077.1|7158_8025_-	DNA replication protein RepB	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
QBA58078.1|8963_9092_-	hypothetical protein	NA	NA	NA	NA	NA
QBA58079.1|9107_9884_-|integrase	integrase	integrase	I3WFA4	Macacine_betaherpesvirus	92.9	6.4e-53
15214:15227	attR	TCAGCAAATCCAGC	NA	NA	NA	NA
>prophage 2
CP035538	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-3, complete sequence	48698	13046	25160	48698	transposase	Escherichia_phage(80.0%)	11	NA	NA
QBA58085.1|13046_13322_+|transposase	IS1 family transposase InsA	transposase	Q71TE9	Escherichia_phage	90.1	6.1e-43
QBA58086.1|13366_13744_+|transposase	IS1 family transposase InsB	transposase	Q71TF0	Escherichia_phage	93.6	1.9e-63
QBA58087.1|14021_14627_-	aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib	NA	NA	NA	NA	NA
QBA58088.1|14809_15367_-	Tn3 resolvase TnpR	NA	Q1MVP4	Enterobacteria_phage	98.4	2.0e-93
QBA58089.1|15672_16377_-|transposase	IS26 transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QBA58090.1|17706_18573_+	Beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	3.8e-155
QBA58091.1|18593_19355_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QBA58092.1|19615_20518_+	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	99.3	7.7e-159
QBA58093.1|20529_21162_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	98.9	8.5e-96
QBA58094.1|21158_21857_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	98.5	3.0e-102
QBA58095.1|22142_25160_+|transposase	transposase	transposase	A0A125RQ78	Bacillus_phage	24.7	3.2e-52
