The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	0	1417	2866554		Hokovirus(100.0%)	1	NA	NA
QBB14606.1|43_1417_+	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	1.8e-13
>prophage 2
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	11094	15593	2866554		Bacillus_virus(100.0%)	4	NA	NA
QBB14615.1|11094_11592_+	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
QBB14616.1|13621_13918_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17093.1|14121_14457_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBB14617.1|14558_15593_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 3
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	37133	38693	2866554		Escherichia_phage(100.0%)	1	NA	NA
QBB14641.1|37133_38693_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 4
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	55344	56076	2866554		Bacillus_virus(100.0%)	1	NA	NA
QBB14658.1|55344_56076_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 5
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	63902	67327	2866554		Staphylococcus_phage(100.0%)	3	NA	NA
QBB14669.1|63902_64832_+	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
QBB14670.1|65400_66348_+	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
QBB14671.1|66349_67327_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
>prophage 6
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	73137	79393	2866554		Bacillus_phage(66.67%)	6	NA	NA
QBB14677.1|73137_74871_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	9.0e-31
QBB14678.1|74895_76659_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
QBB14679.1|77231_77339_-	hypothetical protein	NA	NA	NA	NA	NA
QBB14680.1|77365_77473_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
QBB14681.1|77606_77993_-	GtrA family protein	NA	NA	NA	NA	NA
QBB14682.1|78250_79393_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
>prophage 7
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	97119	98978	2866554		Bacillus_virus(50.0%)	2	NA	NA
QBB14696.1|97119_97755_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
QBB14697.1|97751_98978_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 8
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	102372	106801	2866554		Pandoravirus(50.0%)	4	NA	NA
QBB14702.1|102372_103725_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
QBB14703.1|103786_104974_-	MFS transporter	NA	NA	NA	NA	NA
QBB14704.1|105369_106146_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
QBB14705.1|106138_106801_-	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
>prophage 9
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	114070	115628	2866554		Bacillus_virus(50.0%)	2	NA	NA
QBB14712.1|114070_114820_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
QBB14713.1|114812_115628_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.8e-13
>prophage 10
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	125535	126354	2866554		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
QBB14721.1|125535_126354_-	SDR family oxidoreductase	NA	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	38.2	3.0e-08
>prophage 11
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	138326	143522	2866554		Bacillus_phage(50.0%)	3	NA	NA
QBB14736.1|138326_141188_-	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
QBB14737.1|141189_141582_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
QBB14738.1|141713_143522_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.7	9.2e-95
>prophage 12
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	152853	153720	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB14743.1|152853_153720_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	5.8e-79
>prophage 13
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	172588	173284	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB14756.1|172588_173284_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 14
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	182562	183555	2866554		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
QBB14765.1|182562_183555_+	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 15
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	193138	199520	2866554		Powai_lake_megavirus(33.33%)	5	NA	NA
QBB14777.1|193138_194107_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
QBB14778.1|194227_194584_-	thioredoxin	NA	NA	NA	NA	NA
QBB14779.1|194625_195036_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
QBB14780.1|195415_197482_-	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
QBB14781.1|197780_199520_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
>prophage 16
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	205951	208987	2866554	protease	Streptococcus_phage(50.0%)	2	NA	NA
QBB14788.1|205951_206473_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.6e-26
QBB14789.1|206881_208987_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	4.0e-118
>prophage 17
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	218221	222564	2866554		uncultured_virus(50.0%)	3	NA	NA
QBB14798.1|218221_220630_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.4	1.3e-128
QBB14799.1|221269_221476_+	copper chaperone CopZ	NA	NA	NA	NA	NA
QBB14800.1|221565_222564_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
>prophage 18
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	230997	234197	2866554		Salmonella_virus(50.0%)	2	NA	NA
QBB14807.1|230997_232809_-	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
QBB14808.1|233495_234197_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	4.0e-38
>prophage 19
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	264563	274678	2866554	holin	Klosneuvirus(50.0%)	9	NA	NA
QBB14841.1|264563_265901_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	7.9e-19
QBB14842.1|266158_266575_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14843.1|266697_267588_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
QBB14844.1|267782_269279_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QBB14845.1|269574_269904_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14846.1|269963_271562_-	acyl--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	36.7	4.1e-78
QBB14847.1|271755_272199_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QBB14848.1|272478_272691_-	hypothetical protein	NA	NA	NA	NA	NA
QBB14849.1|272968_274678_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
>prophage 20
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	280526	282910	2866554		Enterococcus_phage(100.0%)	2	NA	NA
QBB14855.1|280526_281063_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	47.5	6.6e-41
QBB14856.1|281059_282910_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	7.2e-236
>prophage 21
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	287938	288436	2866554		Canarypox_virus(100.0%)	1	NA	NA
QBB14860.1|287938_288436_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 22
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	291856	293607	2866554		Planktothrix_phage(50.0%)	2	NA	NA
QBB14865.1|291856_292612_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
QBB14866.1|292719_293607_-	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	1.5e-05
>prophage 23
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	319218	321078	2866554		Enterococcus_phage(100.0%)	1	NA	NA
QBB14886.1|319218_321078_+	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 24
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	346057	346750	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB14904.1|346057_346750_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.7e-28
>prophage 25
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	359200	360214	2866554		Faustovirus(100.0%)	1	NA	NA
QBB14917.1|359200_360214_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 26
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	365843	367556	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB14923.1|365843_367556_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 27
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	383791	384550	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB14938.1|383791_384550_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 28
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	388846	391966	2866554		Lactococcus_phage(33.33%)	5	NA	NA
QBB14943.1|388846_389047_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
QBB14944.1|389164_389734_-	XRE family transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
QBB14945.1|389993_390389_-	DUF3147 family protein	NA	NA	NA	NA	NA
QBB14946.1|390456_390810_-	DUF3147 family protein	NA	NA	NA	NA	NA
QBB14947.1|391126_391966_-	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
>prophage 29
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	404021	411095	2866554	tRNA	Bacillus_virus(33.33%)	4	NA	NA
QBB14956.1|404021_406691_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	4.6e-119
QBB14957.1|406778_407591_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
QBB14958.1|407916_409431_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.5e-90
QBB14959.1|409808_411095_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
>prophage 30
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	419467	427799	2866554		Bacillus_phage(50.0%)	6	NA	NA
QBB14966.1|419467_420751_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
QBB14967.1|421946_422648_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
QBB14968.1|422660_424487_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
QBB14969.1|424479_425814_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14970.1|425814_426603_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14971.1|426998_427799_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
>prophage 31
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	431538	432213	2866554	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
QBB14974.1|431538_432213_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	96.9	2.7e-124
>prophage 32
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	449585	452705	2866554		Liberibacter_phage(100.0%)	1	NA	NA
QBB14985.1|449585_452705_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.5	6.7e-69
>prophage 33
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	457800	463768	2866554		Staphylococcus_phage(33.33%)	4	NA	NA
QBB17109.1|457800_458193_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
QBB14987.1|458193_459633_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
QBB17110.1|461137_461686_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14988.1|461908_463768_+	site-specific DNA-methyltransferase	NA	A0A2R3ZYF2	Campylobacter_phage	34.6	5.8e-44
>prophage 34
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	466830	471055	2866554	transposase	Paenibacillus_phage(50.0%)	4	NA	NA
QBB17111.1|466830_467025_-	hypothetical protein	NA	A0A0C5AJ30	Paenibacillus_phage	48.7	5.0e-07
QBB14990.1|467405_467972_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14991.1|468767_468980_+	hypothetical protein	NA	NA	NA	NA	NA
QBB14992.1|469882_471055_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
>prophage 35
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	474352	475420	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB14997.1|474352_475420_+	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
>prophage 36
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	508266	512476	2866554		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
QBB15016.1|508266_509265_-	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	1.5e-14
QBB15017.1|509261_510257_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
QBB15018.1|510272_511265_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
QBB15019.1|511495_512476_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.7e-40
>prophage 37
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	520742	521945	2866554		Tupanvirus(100.0%)	1	NA	NA
QBB15026.1|520742_521945_+	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 38
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	525315	526296	2866554		Catovirus(100.0%)	1	NA	NA
QBB15033.1|525315_526296_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
>prophage 39
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	531232	531832	2866554		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
QBB15038.1|531232_531832_+	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 40
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	539868	540642	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB15047.1|539868_540642_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	4.9e-13
>prophage 41
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	551302	557867	2866554		Catovirus(50.0%)	6	NA	NA
QBB15053.1|551302_551989_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
QBB15054.1|551991_552756_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
QBB15055.1|552775_554599_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	4.0e-29
QBB15056.1|554588_555617_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
QBB15057.1|555629_556739_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
QBB15058.1|556742_557867_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
>prophage 42
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	564703	567188	2866554		Bacillus_phage(50.0%)	2	NA	NA
QBB15065.1|564703_565966_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.8	1.1e-22
QBB15066.1|566042_567188_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	3.2e-24
>prophage 43
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	570529	573527	2866554		Indivirus(50.0%)	4	NA	NA
QBB17117.1|570529_571489_+	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
QBB15070.1|571550_571754_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15071.1|571932_572445_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
QBB15072.1|572786_573527_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.6	1.9e-38
>prophage 44
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	577067	587351	2866554		Catovirus(50.0%)	3	NA	NA
QBB15076.1|577067_578093_+	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
QBB15077.1|578478_579729_+	MFS transporter	NA	NA	NA	NA	NA
QBB17118.1|580175_587351_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.5	2.9e-67
>prophage 45
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	592185	593370	2866554		Klosneuvirus(100.0%)	1	NA	NA
QBB15081.1|592185_593370_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	7.0e-35
>prophage 46
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	611515	613108	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB15093.1|611515_613108_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	5.4e-22
>prophage 47
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	621639	622218	2866554		Pontimonas_phage(100.0%)	1	NA	NA
QBB15099.1|621639_622218_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
>prophage 48
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	634158	639517	2866554		Enterobacteria_phage(50.0%)	3	NA	NA
QBB15110.1|634158_635715_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
QBB15111.1|635711_636680_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB15112.1|637267_639517_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
>prophage 49
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	650649	652155	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB15121.1|650649_652155_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 50
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	661030	662560	2866554		Vibrio_phage(100.0%)	1	NA	NA
QBB15129.1|661030_662560_-	PTS glucose transporter subunit IIB	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 51
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	669774	670818	2866554		Synechococcus_phage(100.0%)	1	NA	NA
QBB15137.1|669774_670818_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	4.6e-14
>prophage 52
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	680145	684684	2866554		Catovirus(50.0%)	3	NA	NA
QBB15144.1|680145_681867_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
QBB15145.1|682010_682685_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
QBB17126.1|682944_684684_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
>prophage 53
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	691192	692629	2866554		Pandoravirus(100.0%)	1	NA	NA
QBB15151.1|691192_692629_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	2.8e-30
>prophage 54
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	701345	703007	2866554		Arthrobacter_phage(50.0%)	2	NA	NA
QBB15162.1|701345_702296_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	2.0e-16
QBB15163.1|702347_703007_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	7.6e-23
>prophage 55
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	732600	733278	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB15189.1|732600_733278_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	9.2e-32
>prophage 56
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	751508	754243	2866554		Tupanvirus(50.0%)	3	NA	NA
QBB15207.1|751508_752309_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	8.9e-42
QBB17127.1|752298_753243_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
QBB15208.1|753220_754243_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
>prophage 57
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	775511	776354	2866554		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
QBB15231.1|775511_776354_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.3	2.0e-12
>prophage 58
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	786275	794691	2866554	integrase	Staphylococcus_phage(66.67%)	13	775380:775394	797727:797741
775380:775394	attL	TATTCAATTACTACT	NA	NA	NA	NA
QBB15239.1|786275_787379_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	29.0	4.6e-12
QBB17129.1|787584_787923_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15240.1|788040_788886_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
QBB15241.1|789042_789924_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
QBB15242.1|789953_790157_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
QBB15243.1|790168_791266_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
QBB15244.1|791351_791543_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
QBB15245.1|791526_791796_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15246.1|791786_792083_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
QBB15247.1|792103_792607_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
QBB15248.1|792658_792901_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
QBB15249.1|794143_794455_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	70.5	5.5e-24
QBB15250.1|794532_794691_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	71.1	2.7e-11
797727:797741	attR	TATTCAATTACTACT	NA	NA	NA	NA
>prophage 59
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	800882	802406	2866554		Enterococcus_phage(100.0%)	1	NA	NA
QBB15261.1|800882_802406_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	6.4e-41
>prophage 60
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	811366	814399	2866554		Klosneuvirus(50.0%)	2	NA	NA
QBB15272.1|811366_812833_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
QBB15273.1|812857_814399_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
>prophage 61
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	819311	822331	2866554	protease	Lactococcus_phage(33.33%)	3	NA	NA
QBB15281.1|819311_820064_-|protease	serine protease	protease	A0A1W6JND5	Lactococcus_phage	32.2	9.6e-14
QBB15282.1|820652_821498_+	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	40.1	5.9e-52
QBB17130.1|821998_822331_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	54.8	1.7e-10
>prophage 62
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	835817	838572	2866554		Staphylococcus_phage(100.0%)	2	NA	NA
QBB15298.1|835817_837374_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	8.8e-288
QBB15299.1|837366_838572_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.2	3.0e-41
>prophage 63
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	869006	875247	2866554		Lactococcus_phage(33.33%)	6	NA	NA
QBB17140.1|869006_869921_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.0e-49
QBB15321.1|869904_871047_+	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
QBB15322.1|871340_872366_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	2.2e-32
QBB15323.1|872369_873029_+	ABC transporter permease	NA	NA	NA	NA	NA
QBB15324.1|873065_873908_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB15325.1|874239_875247_+	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.8	3.3e-25
>prophage 64
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	893805	895503	2866554		Streptococcus_virus(100.0%)	1	NA	NA
QBB15338.1|893805_895503_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.5e-54
>prophage 65
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	904305	904923	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB15343.1|904305_904923_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 66
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	908829	911927	2866554	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
QBB15350.1|908829_909669_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
QBB15351.1|909953_911927_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	6.5e-94
>prophage 67
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	917813	920278	2866554		Tupanvirus(50.0%)	2	NA	NA
QBB15361.1|917813_919166_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
QBB15362.1|919312_920278_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
>prophage 68
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	929503	939775	2866554	tRNA	Klosneuvirus(16.67%)	10	NA	NA
QBB15371.1|929503_930799_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	8.2e-13
QBB15372.1|930803_931343_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
QBB15373.1|931599_933693_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
QBB15374.1|933921_934803_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
QBB15375.1|934981_935914_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
QBB15376.1|936129_936933_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	1.3e-21
QBB15377.1|936910_937276_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
QBB15378.1|937272_937749_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
QBB15379.1|938142_938235_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15380.1|938287_939775_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	4.6e-92
>prophage 69
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	958958	961415	2866554	protease	Escherichia_phage(100.0%)	1	NA	NA
QBB15387.1|958958_961415_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.0	4.0e-133
>prophage 70
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	967426	972208	2866554	tRNA	Catovirus(50.0%)	8	NA	NA
QBB15391.1|967426_968827_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.2	1.5e-55
QBB15392.1|968819_969224_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
QBB15393.1|969231_969978_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
QBB15394.1|969977_970502_+	NYN domain-containing protein	NA	NA	NA	NA	NA
QBB15395.1|970582_971152_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBB15396.1|971266_971410_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
QBB15397.1|971506_971647_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
QBB15398.1|971659_972208_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
>prophage 71
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	975892	986847	2866554		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
QBB15404.1|975892_979444_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.6	2.7e-50
QBB17144.1|979607_983204_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
QBB15405.1|983340_983595_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
QBB15406.1|983692_984106_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
QBB15407.1|984171_984642_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
QBB15408.1|984810_986847_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.9	5.5e-64
>prophage 72
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	989876	991064	2866554		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
QBB15410.1|989876_991064_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	7.5e-45
>prophage 73
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	997643	998306	2866554		Enterococcus_phage(100.0%)	1	NA	NA
QBB15416.1|997643_998306_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.1e-24
>prophage 74
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1021791	1025112	2866554		Burkholderia_virus(50.0%)	3	NA	NA
QBB15429.1|1021791_1023192_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
QBB15430.1|1023442_1023736_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15431.1|1023735_1025112_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.1	1.8e-21
>prophage 75
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1028753	1029410	2866554		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
QBB15437.1|1028753_1029410_+	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 76
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1040711	1042034	2866554		Erysipelothrix_phage(100.0%)	1	NA	NA
QBB15451.1|1040711_1042034_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.1	2.4e-108
>prophage 77
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1052583	1055938	2866554		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
QBB15461.1|1052583_1053879_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
QBB17146.1|1053906_1054428_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15462.1|1054927_1055938_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	1.5e-33
>prophage 78
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1068947	1069508	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB15475.1|1068947_1069508_+	recombinase	NA	A0A141E172	Streptococcus_phage	35.1	5.7e-19
>prophage 79
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1080791	1081535	2866554		Klosneuvirus(100.0%)	1	NA	NA
QBB15484.1|1080791_1081535_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SI78	Klosneuvirus	32.9	9.5e-06
>prophage 80
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1088469	1092427	2866554		Streptomyces_phage(33.33%)	3	NA	NA
QBB15492.1|1088469_1088868_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
QBB15493.1|1088983_1090279_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	3.3e-14
QBB15494.1|1090699_1092427_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
>prophage 81
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1095653	1096451	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB15498.1|1095653_1096451_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 82
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1102974	1104018	2866554		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
QBB15506.1|1102974_1104018_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 83
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1108392	1109154	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB15513.1|1108392_1109154_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 84
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1113986	1114784	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB15517.1|1113986_1114784_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 85
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1120046	1120520	2866554		Pandoravirus(100.0%)	1	NA	NA
QBB15521.1|1120046_1120520_+	cupin	NA	A0A291AU44	Pandoravirus	39.4	2.1e-14
>prophage 86
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1127724	1132335	2866554		Enterococcus_phage(50.0%)	4	NA	NA
QBB15531.1|1127724_1128291_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
QBB15532.1|1128292_1128751_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
QBB15533.1|1129609_1130485_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
QBB15534.1|1130703_1132335_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
>prophage 87
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1138983	1140357	2866554		Powai_lake_megavirus(100.0%)	1	NA	NA
QBB15540.1|1138983_1140357_+	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.8	1.4e-47
>prophage 88
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1151970	1161818	2866554		Staphylococcus_phage(12.5%)	11	NA	NA
QBB15550.1|1151970_1152810_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.9	2.5e-55
QBB15551.1|1152941_1153925_+	glycosyltransferase	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
QBB15552.1|1153996_1155052_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
QBB15553.1|1155051_1155738_-	response regulator transcription factor	NA	NA	NA	NA	NA
QBB15554.1|1155712_1156186_-	DoxX family protein	NA	NA	NA	NA	NA
QBB15555.1|1157248_1157833_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15556.1|1157887_1158646_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.1	1.3e-50
QBB15557.1|1158649_1159069_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
QBB15558.1|1159070_1159739_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
QBB15559.1|1160089_1160683_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
QBB15560.1|1160666_1161818_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
>prophage 89
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1164957	1188131	2866554		uncultured_Caudovirales_phage(35.71%)	20	NA	NA
QBB15565.1|1164957_1166898_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
QBB15566.1|1167168_1169052_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
QBB15567.1|1169063_1170845_+	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
QBB15568.1|1171066_1172044_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
QBB15569.1|1173791_1174850_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
QBB15570.1|1175144_1175687_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
QBB15571.1|1175800_1175899_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15572.1|1176311_1177229_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
QBB15573.1|1177318_1177420_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15574.1|1177496_1179002_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
QBB15575.1|1179067_1179313_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15576.1|1179342_1179843_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
QBB15577.1|1179862_1180729_-	DMT family transporter	NA	NA	NA	NA	NA
QBB15578.1|1181113_1181380_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
QBB15579.1|1181529_1181928_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
QBB15580.1|1181890_1183996_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
QBB15581.1|1184113_1185085_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
QBB15582.1|1185458_1186430_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
QBB15583.1|1186416_1187373_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
QBB15584.1|1187369_1188131_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 90
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1197412	1203123	2866554		Streptococcus_phage(66.67%)	5	NA	NA
QBB15594.1|1197412_1198483_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
QBB15595.1|1198800_1199856_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
QBB15596.1|1200025_1200667_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
QBB15597.1|1200810_1201677_+	DegV family protein	NA	NA	NA	NA	NA
QBB15598.1|1202040_1203123_+	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	1.3e-43
>prophage 91
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1209201	1210041	2866554		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBB15605.1|1209201_1210041_+	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 92
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1213359	1216206	2866554		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
QBB15608.1|1213359_1216206_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 93
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1220612	1226432	2866554	protease	Streptococcus_phage(40.0%)	5	NA	NA
QBB15612.1|1220612_1221548_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
QBB15613.1|1222313_1223225_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
QBB15614.1|1223221_1224217_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
QBB15615.1|1224326_1225271_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
QBB15616.1|1225844_1226432_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
>prophage 94
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1235544	1236849	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB15624.1|1235544_1236849_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 95
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1241231	1257980	2866554	terminase,coat,integrase	Staphylococcus_phage(73.68%)	22	1230978:1230994	1258007:1258023
1230978:1230994	attL	TAAAGATAAAGCACAAG	NA	NA	NA	NA
QBB15628.1|1241231_1241696_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
QBB15629.1|1242258_1243365_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
QBB15630.1|1243354_1244158_-	XRE family transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
QBB15631.1|1244293_1244497_+	transcriptional regulator	NA	NA	NA	NA	NA
QBB15632.1|1244532_1244751_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBB15633.1|1244762_1244909_+	pathogenicity island protein	NA	NA	NA	NA	NA
QBB15634.1|1244901_1245111_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
QBB15635.1|1245113_1245431_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
QBB15636.1|1245494_1246364_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.8	8.7e-160
QBB15637.1|1246380_1247838_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
QBB15638.1|1248138_1248501_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
QBB15639.1|1248502_1248787_+	pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
QBB15640.1|1248783_1249425_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.0	5.5e-111
QBB15641.1|1250134_1250479_+	pathogenicity island protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
QBB15642.1|1250513_1251092_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
QBB15643.1|1251320_1251848_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
QBB17154.1|1251979_1252192_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
QBB15644.1|1252188_1252758_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
QBB15645.1|1253034_1254003_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
QBB15646.1|1254199_1254754_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
QBB15647.1|1255537_1256338_+	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
QBB15648.1|1257482_1257980_+	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
1258007:1258023	attR	TAAAGATAAAGCACAAG	NA	NA	NA	NA
>prophage 96
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1272159	1273403	2866554		Bacillus_phage(50.0%)	2	NA	NA
QBB15658.1|1272159_1272846_+	thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
QBB15659.1|1273202_1273403_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
>prophage 97
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1276806	1281981	2866554		Streptococcus_phage(50.0%)	8	NA	NA
QBB17155.1|1276806_1277367_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
QBB15667.1|1277439_1278057_-	amino acid transporter	NA	NA	NA	NA	NA
QBB15668.1|1278222_1278705_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBB15669.1|1279103_1279526_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
QBB15670.1|1279673_1280390_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	1.0e-17
QBB15671.1|1280472_1281012_+	nitroreductase	NA	NA	NA	NA	NA
QBB15672.1|1281161_1281482_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
QBB15673.1|1281624_1281981_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
>prophage 98
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1285242	1286268	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB15680.1|1285242_1286268_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 99
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1289755	1337986	2866554	portal,head,integrase,plate,capsid,terminase,holin,tail	Staphylococcus_phage(62.12%)	69	1293849:1293865	1301482:1301498
QBB15685.1|1289755_1290517_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
QBB15686.1|1290615_1291923_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
QBB15687.1|1292037_1293279_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
QBB15688.1|1293268_1293733_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
1293849:1293865	attL	CGCCGTTGTAAATATAT	NA	NA	NA	NA
QBB15689.1|1293883_1295281_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
QBB15690.1|1295348_1296398_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
QBB15691.1|1296459_1296975_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
QBB15692.1|1296978_1297479_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
QBB15693.1|1297529_1298168_-	LexA family transcriptional regulator	NA	I1W622	Staphylococcus_phage	100.0	1.5e-116
QBB15694.1|1298358_1298613_+	XRE family transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	100.0	8.2e-42
QBB15695.1|1298628_1299420_+	phage antirepressor	NA	E0Y3N9	Staphylococcus_virus	100.0	6.5e-146
QBB15696.1|1299420_1299645_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	98.6	2.1e-33
QBB15697.1|1299684_1300134_+	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
QBB15698.1|1300147_1300369_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
QBB15699.1|1300361_1300523_+	DUF1270 family protein	NA	Q4ZB72	Staphylococcus_virus	100.0	2.5e-20
QBB15700.1|1300614_1300875_+	DUF1108 family protein	NA	Q4ZAZ5	Staphylococcus_virus	97.7	2.2e-42
QBB15701.1|1300884_1301106_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
QBB15702.1|1301098_1301722_+	DUF1071 domain-containing protein	NA	A0A0E3T8K8	Staphylococcus_phage	100.0	1.4e-114
1301482:1301498	attR	ATATATTTACAACGGCG	NA	NA	NA	NA
QBB15703.1|1301721_1302147_+	single-stranded DNA-binding protein	NA	R4IG44	Staphylococcus_phage	100.0	3.0e-73
QBB15704.1|1302160_1302835_+	hypothetical protein	NA	Q4ZAK7	Staphylococcus_virus	97.8	1.2e-127
QBB15705.1|1302940_1303798_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
QBB15706.1|1303862_1304633_+	replication protein	NA	W5R8N2	Staphylococcus_phage	100.0	1.4e-116
QBB15707.1|1304642_1305422_+	AAA family ATPase	NA	A7YGR0	Staphylococcus_virus	100.0	1.4e-145
QBB15708.1|1305415_1305574_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
QBB15709.1|1305586_1305808_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	98.6	1.4e-34
QBB15710.1|1305818_1306223_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	99.3	6.0e-71
QBB15711.1|1306227_1306413_+	DUF3113 family protein	NA	M9NSS9	Staphylococcus_phage	96.7	1.6e-26
QBB15712.1|1306413_1306773_+	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	72.4	4.9e-40
QBB15713.1|1306776_1307019_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	97.5	5.6e-40
QBB15714.1|1307083_1307509_+	hypothetical protein	NA	A0A2I6PE09	Staphylococcus_phage	97.9	7.0e-78
QBB15715.1|1307522_1307888_+	acetyltransferase	NA	A1KX82	Staphylococcus_virus	92.6	5.3e-58
QBB15716.1|1307880_1308135_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	100.0	1.4e-38
QBB17156.1|1308097_1308292_+	hypothetical protein	NA	A1KX84	Staphylococcus_virus	98.4	1.6e-26
QBB15717.1|1308284_1308821_+	dUTPase	NA	A1KX85	Staphylococcus_virus	100.0	4.6e-95
QBB15718.1|1308857_1309145_+	DUF1381 domain-containing protein	NA	Q4ZBK2	Staphylococcus_phage	92.6	9.9e-44
QBB15719.1|1309137_1309374_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	98.7	1.1e-35
QBB15720.1|1309357_1309753_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
QBB15721.1|1309749_1309923_+	transcriptional regulator	NA	A1KX88	Staphylococcus_virus	100.0	3.7e-22
QBB15722.1|1309923_1310070_+	hypothetical protein	NA	Q4ZDN7	Staphylococcus_virus	100.0	1.3e-15
QBB15723.1|1310084_1310504_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
QBB15724.1|1310690_1311131_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
QBB15725.1|1311117_1312395_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	100.0	3.0e-249
QBB15726.1|1312405_1313944_+|portal	phage portal protein	portal	S4V6D8	Staphylococcus_phage	99.4	2.0e-292
QBB15727.1|1313950_1314946_+|head	phage head morphogenesis protein	head	B2ZYY2	Staphylococcus_phage	99.7	7.6e-184
QBB15728.1|1315018_1315189_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
QBB15729.1|1315307_1315937_+	DUF4355 domain-containing protein	NA	Q8SDU6	Staphylococcus_phage	100.0	4.4e-36
QBB15730.1|1315950_1316925_+|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	99.7	2.8e-183
QBB15731.1|1316946_1317234_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
QBB15732.1|1317242_1317575_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
QBB15733.1|1317571_1317874_+	hypothetical protein	NA	B2ZYY8	Staphylococcus_phage	98.0	7.4e-50
QBB15734.1|1317873_1318221_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	99.1	1.2e-59
QBB15735.1|1318232_1318616_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
QBB15736.1|1318634_1319216_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
QBB15737.1|1319277_1319643_+|tail	phage tail protein	tail	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
QBB15738.1|1319672_1320017_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
QBB15739.1|1320033_1323501_+	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.6	2.3e-272
QBB15740.1|1323513_1324461_+|tail	phage tail family protein	tail	I1W635	Staphylococcus_phage	99.7	4.7e-183
QBB15741.1|1324469_1326371_+	peptidase	NA	I1W634	Staphylococcus_phage	99.8	0.0e+00
QBB15742.1|1328294_1330118_+|plate	phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	96.9	4.7e-288
QBB15743.1|1330117_1330495_+	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	100.0	5.3e-61
QBB17157.1|1330504_1330678_+	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
QBB15744.1|1330718_1331018_+	DUF2951 family protein	NA	A0EWU6	Staphylococcus_virus	91.9	1.9e-42
QBB15745.1|1331154_1333053_+	CHAP domain-containing protein	NA	E0Y3M7	Staphylococcus_virus	100.0	0.0e+00
QBB15746.1|1333065_1334238_+	DUF2479 domain-containing protein	NA	Q4ZDT3	Staphylococcus_virus	99.2	9.2e-197
QBB15747.1|1334243_1334639_+	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	99.2	3.0e-67
QBB15748.1|1334694_1335132_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
QBB15749.1|1335112_1336558_+	CHAP domain-containing protein	NA	A0A0H3U310	Staphylococcus_phage	99.4	1.2e-294
QBB15750.1|1336946_1337534_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
QBB15751.1|1337530_1337986_+	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
>prophage 100
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1349407	1352076	2866554		Tupanvirus(50.0%)	2	NA	NA
QBB15766.1|1349407_1350865_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
QBB15767.1|1350861_1352076_+	PG:teichoic acid D-alanyltransferase	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
>prophage 101
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1356119	1359747	2866554		Lake_Baikal_phage(50.0%)	3	NA	NA
QBB15774.1|1356119_1356479_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
QBB15775.1|1356932_1358141_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
QBB15776.1|1358271_1359747_+	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	34.9	6.9e-48
>prophage 102
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1369668	1376775	2866554		Aureococcus_anophage(33.33%)	6	NA	NA
QBB15786.1|1369668_1370262_+	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.9e-25
QBB15787.1|1370677_1371055_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
QBB15788.1|1371416_1372544_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
QBB15789.1|1372851_1374042_+	Ornithine aminotransferase 2	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
QBB15790.1|1374150_1375395_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
QBB15791.1|1375845_1376775_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.1e-38
>prophage 103
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1386929	1390583	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB15799.1|1386929_1390583_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.4	4.5e-24
>prophage 104
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1395701	1400328	2866554		Pseudomonas_phage(50.0%)	2	NA	NA
QBB15805.1|1395701_1397516_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	34.2	3.0e-37
QBB15806.1|1397718_1400328_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	7.2e-117
>prophage 105
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1411103	1413117	2866554		Planktothrix_phage(50.0%)	2	NA	NA
QBB15817.1|1411103_1412186_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
QBB15818.1|1412175_1413117_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
>prophage 106
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1416767	1418737	2866554		Bacillus_virus(100.0%)	2	NA	NA
QBB15820.1|1416767_1417754_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
QBB15821.1|1417756_1418737_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
>prophage 107
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1424549	1426358	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB15828.1|1424549_1426358_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 108
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1445290	1447958	2866554		Streptococcus_phage(50.0%)	2	NA	NA
QBB15846.1|1445290_1446853_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
QBB15847.1|1447154_1447958_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
>prophage 109
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1460699	1464420	2866554		Planktothrix_phage(50.0%)	7	NA	NA
QBB15857.1|1460699_1461341_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
QBB15858.1|1461428_1461719_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15859.1|1461859_1461997_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
QBB15860.1|1462085_1462442_-	DoxX family protein	NA	NA	NA	NA	NA
QBB15861.1|1462929_1463889_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB15862.1|1463934_1464066_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15863.1|1464129_1464420_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
>prophage 110
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1472726	1473809	2866554	protease	Staphylococcus_phage(100.0%)	1	NA	NA
QBB15873.1|1472726_1473809_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.7e-16
>prophage 111
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1477474	1481221	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB15878.1|1477474_1481221_-	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 112
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1491731	1506493	2866554		Synechococcus_phage(22.22%)	14	NA	NA
QBB15889.1|1491731_1492592_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
QBB15890.1|1492792_1493275_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
QBB15891.1|1493261_1494386_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QBB15892.1|1494389_1495094_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
QBB15893.1|1495093_1495357_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QBB15894.1|1495358_1496030_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QBB15895.1|1496022_1498212_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
QBB15896.1|1498190_1499675_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
QBB15897.1|1499667_1500696_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
QBB15898.1|1500698_1501265_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	3.2e-30
QBB17161.1|1501279_1502758_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
QBB15899.1|1502779_1504027_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB15900.1|1504293_1505100_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
QBB15901.1|1505092_1506493_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
>prophage 113
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1509860	1514240	2866554		Streptococcus_phage(50.0%)	5	NA	NA
QBB15906.1|1509860_1511033_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
QBB15907.1|1511086_1511629_+	DUF697 domain-containing protein	NA	NA	NA	NA	NA
QBB15908.1|1511782_1512049_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
QBB15909.1|1512051_1513770_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
QBB15910.1|1514006_1514240_-	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
>prophage 114
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1520252	1529085	2866554		Synechococcus_phage(25.0%)	9	NA	NA
QBB15916.1|1520252_1520804_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
QBB15917.1|1521168_1521795_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15918.1|1521965_1523078_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
QBB15919.1|1523081_1524059_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
QBB15920.1|1524149_1525442_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
QBB15921.1|1525445_1526852_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
QBB15922.1|1527019_1527295_+	UPF0223 family protein	NA	NA	NA	NA	NA
QBB15923.1|1527438_1527978_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBB15924.1|1527990_1529085_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	6.9e-37
>prophage 115
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1537218	1539066	2866554		Erysipelothrix_phage(100.0%)	1	NA	NA
QBB15934.1|1537218_1539066_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 116
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1550581	1553489	2866554		Paramecium_bursaria_Chlorella_virus(50.0%)	5	NA	NA
QBB15944.1|1550581_1551508_-	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
QBB15945.1|1551746_1552001_+	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
QBB15946.1|1552003_1552393_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15947.1|1552462_1553005_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
QBB15948.1|1553006_1553489_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 117
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1565392	1566451	2866554	tRNA	Orpheovirus(100.0%)	1	NA	NA
QBB15960.1|1565392_1566451_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 118
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1571589	1576148	2866554		Bodo_saltans_virus(50.0%)	2	NA	NA
QBB15966.1|1571589_1573302_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
QBB15967.1|1575833_1576148_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
>prophage 119
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1587636	1592060	2866554		Staphylococcus_phage(100.0%)	7	NA	NA
QBB15979.1|1587636_1587987_+	fibrinogen-binding protein	NA	A7TWS0	Staphylococcus_phage	49.1	3.5e-19
QBB15980.1|1588582_1588768_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15981.1|1588977_1589196_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	52.5	2.8e-06
QBB15982.1|1589389_1589623_-	hypothetical protein	NA	NA	NA	NA	NA
QBB15983.1|1590100_1591060_-	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	29.3	9.1e-33
QBB15984.1|1591732_1591879_+	hypothetical protein	NA	NA	NA	NA	NA
QBB15985.1|1591835_1592060_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
>prophage 120
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1602940	1603129	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB15993.1|1602940_1603129_+	DNA-binding protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 121
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1622715	1625469	2866554	tRNA	Orpheovirus(100.0%)	1	NA	NA
QBB16011.1|1622715_1625469_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 122
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1629932	1634543	2866554		Enterobacteria_phage(33.33%)	4	NA	NA
QBB16016.1|1629932_1631240_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
QBB16017.1|1631267_1632149_+	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
QBB16018.1|1632166_1633441_+	dihydroorotase	NA	NA	NA	NA	NA
QBB16019.1|1633442_1634543_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
>prophage 123
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1638510	1639122	2866554		Pandoravirus(100.0%)	1	NA	NA
QBB16022.1|1638510_1639122_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 124
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1642436	1644693	2866554		Abalone_herpesvirus(50.0%)	3	NA	NA
QBB16026.1|1642436_1643060_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	3.6e-22
QBB16027.1|1643059_1643278_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
QBB16028.1|1643493_1644693_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
>prophage 125
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1649703	1650639	2866554	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
QBB16033.1|1649703_1650639_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 126
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1653786	1655781	2866554		Moumouvirus(100.0%)	1	NA	NA
QBB16037.1|1653786_1655781_+	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 127
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1666152	1668400	2866554		Trichoplusia_ni_ascovirus(33.33%)	4	NA	NA
QBB16047.1|1666152_1666887_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
QBB16048.1|1667193_1667298_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16049.1|1667319_1667553_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
QBB16050.1|1667668_1668400_+	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
>prophage 128
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1682064	1686382	2866554		Emiliania_huxleyi_virus(33.33%)	4	NA	NA
QBB16060.1|1682064_1682832_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
QBB16061.1|1682940_1684107_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
QBB16062.1|1684128_1685037_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
QBB16063.1|1685263_1686382_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
>prophage 129
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1692829	1697049	2866554	protease,transposase	Brevibacillus_phage(33.33%)	4	NA	NA
QBB16066.1|1692829_1693726_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
QBB16067.1|1693722_1694268_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
QBB16068.1|1694333_1695737_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
QBB16069.1|1695876_1697049_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
>prophage 130
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1706867	1718681	2866554		Clostridium_phage(33.33%)	9	NA	NA
QBB17167.1|1706867_1711178_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
QBB16079.1|1711287_1711488_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16080.1|1711467_1711935_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
QBB16081.1|1711955_1713131_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
QBB16082.1|1713151_1713436_+	YlxR family protein	NA	NA	NA	NA	NA
QBB16083.1|1713432_1713750_+	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
QBB16084.1|1713754_1715872_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
QBB16085.1|1716257_1716608_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
QBB16086.1|1717709_1718681_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
>prophage 131
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1723819	1729364	2866554		Mycobacterium_phage(33.33%)	4	NA	NA
QBB17168.1|1723819_1726063_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	2.0e-83
QBB16091.1|1726068_1726782_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB16092.1|1726812_1728078_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
QBB16093.1|1728077_1729364_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
>prophage 132
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1733563	1734607	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16099.1|1733563_1734607_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 133
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1744022	1750504	2866554		Cafeteria_roenbergensis_virus(33.33%)	4	NA	NA
QBB16108.1|1744022_1746641_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
QBB16109.1|1746653_1748663_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
QBB16110.1|1748668_1749211_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
QBB16111.1|1749685_1750504_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
>prophage 134
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1756445	1756922	2866554		Fowlpox_virus(100.0%)	1	NA	NA
QBB16115.1|1756445_1756922_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 135
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1761992	1765033	2866554		Staphylococcus_phage(100.0%)	5	NA	NA
QBB16119.1|1761992_1762190_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	1.7e-10
QBB16120.1|1762879_1763104_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	8.6e-19
QBB16121.1|1763401_1763608_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
QBB16122.1|1764308_1764419_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16123.1|1764847_1765033_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
>prophage 136
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1772647	1776923	2866554		Anomala_cuprea_entomopoxvirus(50.0%)	6	NA	NA
QBB16135.1|1772647_1773556_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	2.3e-22
QBB16136.1|1773524_1774256_+	ABC transporter permease	NA	NA	NA	NA	NA
QBB16137.1|1774259_1775351_+	sensor histidine kinase	NA	NA	NA	NA	NA
QBB16138.1|1775347_1775950_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBB16139.1|1776062_1776251_-	LapA family protein	NA	NA	NA	NA	NA
QBB16140.1|1776389_1776923_+	thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
>prophage 137
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1787058	1792714	2866554		Tupanvirus(25.0%)	7	NA	NA
QBB16150.1|1787058_1788576_+	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
QBB16151.1|1788666_1788816_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
QBB16152.1|1789269_1789539_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
QBB16153.1|1789695_1790673_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	2.3e-185
QBB16154.1|1790669_1790774_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16155.1|1790847_1791711_+	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	4.1e-16
QBB16156.1|1792090_1792714_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
>prophage 138
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1796863	1797985	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16163.1|1796863_1797985_+	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 139
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1801656	1803303	2866554		Vibrio_phage(100.0%)	1	NA	NA
QBB16165.1|1801656_1803303_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 140
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1809235	1813629	2866554		Bacillus_virus(50.0%)	2	NA	NA
QBB17171.1|1809235_1811227_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
QBB16172.1|1811226_1813629_+	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	5.1e-93
>prophage 141
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1823284	1824547	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16179.1|1823284_1824547_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 142
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1828864	1831219	2866554		Acinetobacter_phage(100.0%)	3	NA	NA
QBB16183.1|1828864_1829431_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
QBB16184.1|1829436_1830435_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.6	8.5e-34
QBB16185.1|1830436_1831219_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	2.5e-28
>prophage 143
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1838712	1840763	2866554	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
QBB16192.1|1838712_1839885_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
QBB16193.1|1840061_1840763_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	1.5e-13
>prophage 144
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1844127	1847904	2866554	transposase	Staphylococcus_phage(66.67%)	3	NA	NA
QBB16199.1|1844127_1844802_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
QBB16200.1|1845034_1845829_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
QBB16201.1|1847229_1847904_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
>prophage 145
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1852767	1854234	2866554		Erysipelothrix_phage(100.0%)	1	NA	NA
QBB16205.1|1852767_1854234_+	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
>prophage 146
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1857964	1866211	2866554	transposase	Enterobacteria_phage(20.0%)	7	NA	NA
QBB16209.1|1857964_1858558_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.5e-41
QBB16210.1|1858821_1859202_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
QBB16211.1|1861054_1861900_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.6	2.2e-30
QBB16212.1|1861966_1862611_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	95.3	9.8e-116
QBB16213.1|1862757_1864572_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
QBB16214.1|1864711_1865353_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
QBB16215.1|1865359_1866211_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
>prophage 147
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1871297	1872899	2866554		Klosneuvirus(100.0%)	1	NA	NA
QBB16220.1|1871297_1872899_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 148
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1880744	1885776	2866554		Yellowstone_lake_phycodnavirus(33.33%)	8	NA	NA
QBB16228.1|1880744_1882010_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
QBB16229.1|1882249_1882651_-	protein msa	NA	NA	NA	NA	NA
QBB16230.1|1882848_1883049_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
QBB16231.1|1883083_1883272_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16232.1|1883219_1883528_-	DUF1033 family protein	NA	NA	NA	NA	NA
QBB16233.1|1883690_1883960_+	acylphosphatase	NA	NA	NA	NA	NA
QBB16234.1|1883978_1884608_+	5-bromo-4-chloroindolyl phosphate hydrolase	NA	NA	NA	NA	NA
QBB16235.1|1884639_1885776_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
>prophage 149
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1889316	1890108	2866554		Halovirus(100.0%)	1	NA	NA
QBB16238.1|1889316_1890108_-	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 150
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1896273	1898285	2866554		Hokovirus(50.0%)	2	NA	NA
QBB16243.1|1896273_1897629_-	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
QBB16244.1|1897625_1898285_-	DNA-binding response regulator ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
>prophage 151
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1902477	1911866	2866554		Staphylococcus_phage(60.0%)	13	NA	NA
QBB16249.1|1902477_1903968_-	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
QBB16250.1|1904159_1904381_-	YozE family protein	NA	NA	NA	NA	NA
QBB16251.1|1904380_1904881_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
QBB16252.1|1904892_1905321_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
QBB16253.1|1905313_1905847_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
QBB16254.1|1905932_1906772_-	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
QBB16255.1|1906786_1907266_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	2.0e-73
QBB16256.1|1907464_1908421_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.3e-167
QBB16257.1|1908844_1909282_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
QBB16258.1|1909297_1910422_-	virulence factor	NA	NA	NA	NA	NA
QBB16259.1|1910459_1910711_-	scaffolding protein	NA	NA	NA	NA	NA
QBB16260.1|1910722_1910944_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
QBB16261.1|1911161_1911866_+	VUT family protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
>prophage 152
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1950534	1951413	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16268.1|1950534_1951413_-	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 153
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1960738	1961365	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16278.1|1960738_1961365_+	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 154
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	1966120	2053863	2866554	portal,tRNA,head,integrase,protease,capsid,terminase,holin,tail	Staphylococcus_phage(81.33%)	105	1991932:1991947	2054327:2054342
QBB16282.1|1966120_1967413_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.1	1.9e-54
QBB16283.1|1970452_1971424_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
QBB16284.1|1971410_1972613_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
QBB16285.1|1972617_1973760_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
QBB16286.1|1974001_1974319_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
QBB17173.1|1974655_1975336_-	zinc metallopeptidase	NA	NA	NA	NA	NA
QBB16287.1|1975407_1975995_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
QBB16288.1|1975984_1976560_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
QBB16289.1|1976573_1977818_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBB16290.1|1977824_1979123_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBB16291.1|1979132_1980197_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
QBB16292.1|1980222_1981389_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
QBB16293.1|1981775_1981976_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16294.1|1982184_1982634_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
QBB17174.1|1982725_1983670_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	7.3e-11
QBB16295.1|1983686_1984412_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
QBB16296.1|1984414_1984987_-	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
QBB16297.1|1984913_1985228_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16298.1|1985417_1985690_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
QBB16299.1|1985860_1986859_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
QBB16300.1|1986875_1988186_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
QBB16301.1|1988407_1989583_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
QBB16302.1|1990280_1990940_-	(d)CMP kinase	NA	NA	NA	NA	NA
QBB16303.1|1991016_1991985_+	asparaginase	NA	NA	NA	NA	NA
1991932:1991947	attL	GCGTTAAGCAACAATT	NA	NA	NA	NA
QBB16304.1|1992098_1993085_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
QBB16305.1|1993245_1993362_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16306.1|1993486_1994947_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
QBB16307.1|1995099_1996479_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	4.9e-56
QBB16308.1|1996468_1997422_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16309.1|1997529_1997778_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
QBB16310.1|1997883_1998429_-	ECF transporter S component	NA	NA	NA	NA	NA
QBB16311.1|1998838_1999753_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB16312.1|1999809_2000727_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB16313.1|2000784_2001690_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB17175.1|2001780_2002032_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
QBB16314.1|2002214_2003198_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
QBB16315.1|2003193_2004132_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
QBB16316.1|2004521_2005976_-	CHAP domain-containing protein	NA	A0A068A229	Staphylococcus_phage	100.0	1.5e-289
QBB16317.1|2005986_2006289_-|holin	phage holin	holin	A0A068A215	Staphylococcus_phage	100.0	5.3e-48
QBB16318.1|2006339_2006447_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17176.1|2006455_2006677_-|holin	putative holin-like toxin	holin	A0A068A202	Staphylococcus_phage	100.0	1.9e-23
QBB16319.1|2006785_2007559_-	staphylococcal enterotoxin type A	NA	A0A068A244	Staphylococcus_phage	100.0	1.7e-146
QBB16320.1|2007979_2008354_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
QBB16321.1|2008409_2008697_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
QBB16322.1|2008742_2008895_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
QBB16323.1|2008887_2012670_-	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	100.0	0.0e+00
QBB16324.1|2012685_2014170_-|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
QBB16325.1|2014166_2018711_-|tail	phage tail tape measure protein	tail	A0A068A2C9	Staphylococcus_phage	100.0	0.0e+00
QBB16326.1|2018955_2019306_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
QBB16327.1|2019355_2019580_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
QBB16328.1|2019621_2020266_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
QBB16329.1|2020266_2020674_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
QBB16330.1|2020670_2021075_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
QBB16331.1|2021071_2021434_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
QBB16332.1|2021417_2021702_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
QBB16333.1|2021691_2021976_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	98.9	2.3e-45
QBB16334.1|2021995_2023141_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
QBB16335.1|2023164_2023902_-|protease	Clp protease ClpP	protease	A0A068A225	Staphylococcus_phage	100.0	1.8e-129
QBB16336.1|2023885_2025073_-|portal	phage portal protein	portal	A0A068A211	Staphylococcus_phage	100.0	3.9e-219
QBB16337.1|2025088_2026750_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
QBB16338.1|2026746_2027091_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
QBB16339.1|2027753_2028170_-	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
QBB17177.1|2028197_2028398_-	DUF1514 domain-containing protein	NA	A0A2I6PDJ9	Staphylococcus_phage	100.0	1.4e-28
QBB16340.1|2028397_2028547_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
QBB16341.1|2028543_2028930_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
QBB16342.1|2028926_2029133_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
QBB16343.1|2029129_2029375_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
QBB16344.1|2029411_2029954_-	dUTP pyrophosphatase	NA	A0A068A209	Staphylococcus_phage	100.0	1.1e-96
QBB16345.1|2029946_2030129_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
QBB16346.1|2030118_2030370_-	DUF1024 family protein	NA	A0A068A237	Staphylococcus_phage	100.0	1.4e-38
QBB16347.1|2030362_2030647_-	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	100.0	9.4e-47
QBB16348.1|2030643_2031093_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
QBB16349.1|2031157_2031400_-	hypothetical protein	NA	A0A068A208	Staphylococcus_phage	100.0	3.0e-41
QBB16350.1|2031403_2031760_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
QBB16351.1|2031760_2031946_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	100.0	2.4e-27
QBB16352.1|2031950_2032355_-	DUF1064 domain-containing protein	NA	A0A068A2B2	Staphylococcus_phage	100.0	9.6e-69
QBB16353.1|2032364_2032586_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
QBB16354.1|2032599_2032758_-	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
QBB16355.1|2032751_2033531_-	AAA family ATPase	NA	A0A068A1Z4	Staphylococcus_phage	100.0	2.9e-146
QBB16356.1|2033540_2034311_-	replication protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
QBB16357.1|2034376_2034658_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
QBB16358.1|2034798_2035470_-	hypothetical protein	NA	A0A068A206	Staphylococcus_phage	100.0	4.4e-127
QBB16359.1|2035482_2036034_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
QBB16360.1|2036062_2036851_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
QBB16361.1|2036843_2037065_-	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
QBB16362.1|2037074_2037335_-	DUF1108 family protein	NA	A0A068A219	Staphylococcus_phage	100.0	8.9e-44
QBB16363.1|2037748_2037916_-	DUF1270 family protein	NA	A0A068A1Z2	Staphylococcus_phage	100.0	4.7e-22
QBB16364.1|2037927_2038191_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
QBB16365.1|2038220_2038439_-	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
QBB16366.1|2038996_2039257_-	transcriptional regulator	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
QBB16367.1|2039269_2040067_-	phage antirepressor Ant	NA	A0A068A1Z1	Staphylococcus_phage	100.0	1.7e-146
QBB16368.1|2040082_2040325_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	100.0	2.8e-39
QBB16369.1|2041840_2042026_+	hypothetical protein	NA	A0A068A1Z0	Staphylococcus_phage	100.0	3.0e-25
QBB16370.1|2042083_2042287_-	hypothetical protein	NA	A0A068A231	Staphylococcus_phage	100.0	2.2e-29
QBB16371.1|2042314_2043196_+	hypothetical protein	NA	A0A068A296	Staphylococcus_phage	100.0	2.1e-140
QBB17178.1|2043479_2044478_+|integrase	site-specific integrase	integrase	A0A068A216	Staphylococcus_phage	99.7	2.9e-183
QBB17179.1|2044520_2046407_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	1.5e-108
QBB16372.1|2046560_2047469_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB16373.1|2047713_2049465_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
QBB16374.1|2049445_2050171_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
QBB16375.1|2050303_2051041_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
QBB16376.1|2051033_2051576_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
QBB16377.1|2051568_2052300_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	6.1e-05
QBB16378.1|2052391_2052898_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
QBB16379.1|2052975_2053863_-	tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
2054327:2054342	attR	AATTGTTGCTTAACGC	NA	NA	NA	NA
>prophage 155
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2059525	2061010	2866554		Cyanophage(100.0%)	1	NA	NA
QBB16387.1|2059525_2061010_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 156
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2075393	2081965	2866554		Indivirus(66.67%)	5	NA	NA
QBB16399.1|2075393_2076815_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.1	2.5e-39
QBB16400.1|2076965_2078645_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QBB16401.1|2078660_2079113_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
QBB16402.1|2079544_2080426_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
QBB16403.1|2080627_2081965_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
>prophage 157
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2089462	2092274	2866554		Prochlorococcus_phage(100.0%)	2	NA	NA
QBB16413.1|2089462_2090935_-	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
QBB16414.1|2090927_2092274_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	38.0	3.0e-58
>prophage 158
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2097817	2098441	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB16423.1|2097817_2098441_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 159
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2104613	2115101	2866554	tRNA	Bacillus_thuringiensis_phage(14.29%)	10	NA	NA
QBB16431.1|2104613_2105213_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
QBB16432.1|2105488_2105899_-	transcriptional repressor	NA	NA	NA	NA	NA
QBB16433.1|2105885_2106749_-	metal ABC transporter permease	NA	NA	NA	NA	NA
QBB16434.1|2106790_2107576_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.7e-19
QBB16435.1|2107700_2108591_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
QBB16436.1|2108600_2109947_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
QBB16437.1|2110060_2111161_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
QBB16438.1|2111163_2111841_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
QBB16439.1|2111971_2113078_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
QBB16440.1|2113301_2115101_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
>prophage 160
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2121395	2122343	2866554		Rhizobium_phage(100.0%)	1	NA	NA
QBB16447.1|2121395_2122343_-	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 161
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2128819	2129959	2866554		Catovirus(100.0%)	1	NA	NA
QBB16453.1|2128819_2129959_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 162
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2135481	2141661	2866554		Streptococcus_phage(33.33%)	5	NA	NA
QBB16456.1|2135481_2137305_-	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
QBB16457.1|2137666_2137918_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
QBB16458.1|2137962_2138937_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
QBB17185.1|2138993_2141141_-	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.2e-32
QBB16459.1|2141199_2141661_-	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
>prophage 163
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2148930	2149683	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16471.1|2148930_2149683_-	exotoxin	NA	A0EX09	Staphylococcus_phage	39.8	3.0e-47
>prophage 164
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2158337	2181717	2866554	tRNA	Catovirus(11.11%)	22	NA	NA
QBB16478.1|2158337_2158961_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
QBB16479.1|2158960_2160229_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
QBB16480.1|2160240_2161164_-	U32 family peptidase	NA	NA	NA	NA	NA
QBB16481.1|2161166_2161805_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
QBB16482.1|2162089_2162398_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
QBB16483.1|2162412_2162841_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
QBB16484.1|2162844_2163105_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
QBB16485.1|2163167_2165798_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
QBB16486.1|2166142_2168620_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
QBB16487.1|2168621_2169290_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBB16488.1|2169869_2170988_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QBB16489.1|2170988_2172131_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
QBB16490.1|2172442_2173456_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
QBB16491.1|2173692_2173839_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16492.1|2173878_2174061_-	CsbD family protein	NA	NA	NA	NA	NA
QBB16493.1|2174160_2174583_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
QBB16494.1|2174667_2175942_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	4.8e-106
QBB16495.1|2176102_2176876_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
QBB16496.1|2176875_2177004_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16497.1|2177336_2179103_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
QBB16498.1|2179118_2180381_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
QBB16499.1|2180841_2181717_-	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
>prophage 165
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2184793	2193835	2866554	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
QBB16501.1|2184793_2185312_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
QBB16502.1|2185333_2187607_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
QBB16503.1|2187809_2190089_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	4.8e-32
QBB16504.1|2190362_2190623_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
QBB16505.1|2190641_2191781_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
QBB16506.1|2191803_2192829_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QBB16507.1|2192830_2193835_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 166
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2204357	2206988	2866554	tRNA	Catovirus(100.0%)	1	NA	NA
QBB16520.1|2204357_2206988_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.2e-153
>prophage 167
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2220378	2220987	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16532.1|2220378_2220987_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
>prophage 168
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2224432	2227703	2866554	tRNA	Tupanvirus(50.0%)	3	NA	NA
QBB16536.1|2224432_2226370_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
QBB16537.1|2226567_2226690_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16538.1|2226782_2227703_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
>prophage 169
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2231616	2239781	2866554		Bacillus_virus(25.0%)	5	NA	NA
QBB16543.1|2231616_2232489_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	38.2	2.6e-42
QBB16544.1|2232504_2235072_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.0e-47
QBB16545.1|2235429_2236917_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17188.1|2237415_2239077_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
QBB16546.1|2239076_2239781_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
>prophage 170
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2244664	2246422	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16551.1|2244664_2246422_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 171
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2252876	2256074	2866554		Streptomyces_phage(100.0%)	1	NA	NA
QBB16556.1|2252876_2256074_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	5.0e-136
>prophage 172
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2273747	2277882	2866554		Paramecium_bursaria_Chlorella_virus(50.0%)	4	NA	NA
QBB16573.1|2273747_2274491_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
QBB16574.1|2274570_2275017_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
QBB16575.1|2275130_2276291_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
QBB16576.1|2276277_2277882_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
>prophage 173
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2283647	2286278	2866554	protease,tRNA	uncultured_Mediterranean_phage(50.0%)	2	NA	NA
QBB16581.1|2283647_2284922_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
QBB16582.1|2285015_2286278_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
>prophage 174
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2292890	2294597	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16588.1|2292890_2294597_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 175
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2305171	2310499	2866554		Mycobacterium_phage(50.0%)	3	NA	NA
QBB16597.1|2305171_2308996_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
QBB16598.1|2309016_2309613_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
QBB16599.1|2309641_2310499_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
>prophage 176
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2322160	2336281	2866554	tRNA	Staphylococcus_phage(100.0%)	7	NA	NA
QBB16610.1|2322160_2323429_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
QBB16611.1|2323545_2330106_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	9.2e-302
QBB16612.1|2330431_2330743_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
QBB16613.1|2330764_2333188_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
QBB16614.1|2333476_2334658_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
QBB16615.1|2334767_2335721_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.1e-78
QBB16616.1|2335717_2336281_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	100.0	2.2e-103
>prophage 177
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2339506	2372357	2866554	protease,transposase	Staphylococcus_phage(90.0%)	35	NA	NA
QBB16620.1|2339506_2340439_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	8.2e-172
QBB16621.1|2340560_2341025_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
QBB16622.1|2341037_2342219_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
QBB16623.1|2342229_2342862_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
QBB17193.1|2342868_2343900_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	3.4e-195
QBB16624.1|2344392_2345895_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
QBB16625.1|2346417_2346732_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	5.7e-53
QBB16626.1|2346731_2348024_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	98.6	6.1e-226
QBB16627.1|2348041_2348437_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
QBB16628.1|2348776_2350051_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
QBB16629.1|2350252_2351107_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
QBB16630.1|2351382_2351607_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16631.1|2351805_2352276_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	97.4	3.3e-81
QBB16632.1|2352388_2352832_+	competence protein ComK	NA	NA	NA	NA	NA
QBB16633.1|2352818_2353262_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
QBB16634.1|2353537_2354191_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
QBB16635.1|2354629_2355343_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
QBB16636.1|2355602_2355905_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16637.1|2356160_2356526_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.1e-58
QBB16638.1|2356522_2356876_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
QBB16639.1|2357258_2358092_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	2.7e-158
QBB17194.1|2358303_2359212_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
QBB16640.1|2359336_2360530_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	7.4e-218
QBB16641.1|2360901_2362494_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
QBB17195.1|2362746_2363493_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
QBB16642.1|2363497_2363971_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
QBB16643.1|2364036_2364294_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
QBB16644.1|2364290_2365292_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	3.4e-184
QBB16645.1|2365296_2366775_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	5.3e-282
QBB17196.1|2366933_2367389_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	1.0e-79
QBB16646.1|2367691_2368342_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.1	8.8e-56
QBB16647.1|2369493_2370120_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.2	1.1e-71
QBB16648.1|2370164_2370890_+	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	1.1e-25
QBB16649.1|2370916_2371669_+	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
QBB16650.1|2371799_2372357_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	4.1e-78
>prophage 178
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2376756	2384992	2866554		Staphylococcus_phage(80.0%)	7	NA	NA
QBB16652.1|2376756_2378022_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.3	5.2e-44
QBB16653.1|2378014_2379571_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.9	4.4e-287
QBB16654.1|2379965_2380547_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	63.2	4.6e-56
QBB16655.1|2381392_2381866_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16656.1|2381870_2382662_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
QBB16657.1|2383430_2383886_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.2	6.3e-61
QBB17197.1|2384842_2384992_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	64.3	1.0e-07
>prophage 179
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2388735	2392999	2866554		Staphylococcus_phage(80.0%)	5	NA	NA
QBB16662.1|2388735_2389491_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
QBB16663.1|2389529_2390300_-	staphylococcal enterotoxin type C1	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
QBB16664.1|2390453_2391182_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	38.6	2.5e-27
QBB16665.1|2391216_2391936_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	1.4e-25
QBB16666.1|2392216_2392999_-	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
>prophage 180
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2400850	2401591	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16674.1|2400850_2401591_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-24
>prophage 181
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2411332	2411677	2866554		Streptococcus_phage(100.0%)	1	NA	NA
QBB16682.1|2411332_2411677_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 182
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2422619	2423348	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB16694.1|2422619_2423348_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
>prophage 183
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2439883	2441620	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16703.1|2439883_2441620_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	9.9e-54
>prophage 184
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2450022	2451195	2866554	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
QBB16711.1|2450022_2451195_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
>prophage 185
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2458436	2459066	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB16719.1|2458436_2459066_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	29.8	2.3e-05
>prophage 186
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2464062	2464476	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16723.1|2464062_2464476_-	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	3.3e-16
>prophage 187
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2467929	2472957	2866554		Staphylococcus_phage(33.33%)	5	NA	NA
QBB16729.1|2467929_2468484_+	DNA polymerase III subunit epsilon	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
QBB16730.1|2468550_2469621_-	DNA polymerase IV	NA	NA	NA	NA	NA
QBB16731.1|2469867_2470398_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
QBB16732.1|2470567_2471929_-	RNA methyltransferase	NA	A0A1X9I6F4	Streptococcus_phage	43.8	6.3e-104
QBB16733.1|2472009_2472957_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
>prophage 188
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2480075	2486842	2866554		Ralstonia_phage(33.33%)	5	NA	NA
QBB16740.1|2480075_2482079_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
QBB16741.1|2482082_2484275_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
QBB16742.1|2484271_2484964_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
QBB16743.1|2485135_2485438_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16744.1|2485546_2486842_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
>prophage 189
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2490544	2492828	2866554		Bacillus_virus(100.0%)	2	NA	NA
QBB16750.1|2490544_2491366_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
QBB16751.1|2491358_2492828_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
>prophage 190
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2496858	2498888	2866554		Bacillus_phage(50.0%)	2	NA	NA
QBB16756.1|2496858_2497956_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
QBB16757.1|2498327_2498888_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
>prophage 191
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2503329	2507369	2866554	transposase	Streptococcus_pyogenes_phage(50.0%)	4	NA	NA
QBB16761.1|2503329_2504481_+|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.0	9.0e-11
QBB17200.1|2504519_2506547_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB16762.1|2506555_2506921_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB16763.1|2506949_2507369_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.1e-30
>prophage 192
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2516969	2519415	2866554		Staphylococcus_phage(100.0%)	3	NA	NA
QBB16772.1|2516969_2517842_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
QBB16773.1|2517789_2518518_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
QBB16774.1|2518518_2519415_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.4e-16
>prophage 193
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2524812	2530301	2866554		Staphylococcus_phage(100.0%)	7	NA	NA
QBB16781.1|2524812_2525013_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
QBB16782.1|2525384_2525564_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
QBB16783.1|2525587_2525896_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	77.5	9.3e-24
QBB16784.1|2525874_2526135_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
QBB16785.1|2526187_2526538_-	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
QBB16786.1|2528210_2529227_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
QBB16787.1|2529248_2530301_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
>prophage 194
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2535628	2537605	2866554		uncultured_virus(100.0%)	2	NA	NA
QBB16789.1|2535628_2537245_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.6	3.4e-157
QBB16790.1|2537320_2537605_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 195
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2544787	2558849	2866554	tRNA	uncultured_Caudovirales_phage(16.67%)	11	NA	NA
QBB16798.1|2544787_2545504_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
QBB16799.1|2545872_2546832_-	carbohydrate kinase	NA	NA	NA	NA	NA
QBB16800.1|2546828_2548313_-	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
QBB16801.1|2548461_2549412_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB16802.1|2549594_2550845_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
QBB16803.1|2551053_2551278_-	oxidoreductase	NA	NA	NA	NA	NA
QBB17202.1|2551337_2552366_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
QBB16804.1|2552720_2553356_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
QBB16805.1|2553608_2555537_+	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	2.4e-53
QBB16806.1|2555899_2557510_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.0	1.1e-19
QBB16807.1|2557823_2558849_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	1.2e-62
>prophage 196
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2562608	2567332	2866554		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
QBB16812.1|2562608_2564378_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
QBB16813.1|2564377_2564632_+	ACT domain-containing protein	NA	NA	NA	NA	NA
QBB16814.1|2564768_2565773_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
QBB16815.1|2565802_2567332_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
>prophage 197
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2581537	2584921	2866554		Bacillus_phage(50.0%)	6	NA	NA
QBB16823.1|2581537_2582308_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
QBB16824.1|2582282_2582762_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
QBB16825.1|2582763_2583090_-	STAS domain-containing protein	NA	NA	NA	NA	NA
QBB16826.1|2583208_2584210_-	serine/threonine protein phosphatase	NA	NA	NA	NA	NA
QBB16827.1|2584360_2584594_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16828.1|2584558_2584921_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
>prophage 198
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2590071	2592099	2866554		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
QBB16836.1|2590071_2592099_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	6.6e-25
>prophage 199
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2606505	2607153	2866554		Moumouvirus(100.0%)	1	NA	NA
QBB16848.1|2606505_2607153_+	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	6.1e-09
>prophage 200
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2612984	2613380	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16855.1|2612984_2613380_-	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 201
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2623839	2631589	2866554		Catovirus(25.0%)	9	NA	NA
QBB17205.1|2623839_2624967_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.6	1.8e-27
QBB16869.1|2624990_2625620_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
QBB16870.1|2625647_2626886_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
QBB16871.1|2626912_2627437_-	TIGR01440 family protein	NA	NA	NA	NA	NA
QBB16872.1|2627543_2627963_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
QBB16873.1|2627959_2629057_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
QBB16874.1|2629089_2629926_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
QBB16875.1|2629912_2630989_-	peptide chain release factor 1	NA	NA	NA	NA	NA
QBB16876.1|2630989_2631589_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
>prophage 202
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2648943	2652774	2866554		Geobacillus_virus(50.0%)	5	NA	NA
QBB16890.1|2648943_2650245_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
QBB16891.1|2650228_2650357_+	hypothetical protein	NA	NA	NA	NA	NA
QBB16892.1|2650523_2651186_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
QBB16893.1|2651499_2652210_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
QBB16894.1|2652330_2652774_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
>prophage 203
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2663953	2666773	2866554		Bacillus_phage(50.0%)	2	NA	NA
QBB16907.1|2663953_2664736_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
QBB16908.1|2664967_2666773_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
>prophage 204
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2673028	2680474	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB16913.1|2673028_2680474_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 205
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2684065	2684974	2866554		Klosneuvirus(100.0%)	1	NA	NA
QBB16917.1|2684065_2684974_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 206
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2700892	2701861	2866554		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
QBB16926.1|2700892_2701861_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 207
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2712065	2713628	2866554		Vibrio_phage(100.0%)	1	NA	NA
QBB16934.1|2712065_2713628_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	9.3e-19
>prophage 208
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2717591	2719004	2866554		Pandoravirus(100.0%)	1	NA	NA
QBB16938.1|2717591_2719004_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 209
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2725325	2728424	2866554		Orpheovirus(50.0%)	4	NA	NA
QBB16945.1|2725325_2726066_+	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	7.3e-14
QBB16946.1|2726360_2726969_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
QBB16947.1|2727230_2727356_-	hypothetical protein	NA	NA	NA	NA	NA
QBB16948.1|2727575_2728424_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.7e-43
>prophage 210
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2731800	2737170	2866554		Clostridium_phage(50.0%)	5	NA	NA
QBB16951.1|2731800_2732655_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	4.9e-06
QBB16952.1|2732865_2733681_-	hydrolase	NA	NA	NA	NA	NA
QBB16953.1|2733975_2734401_+	MAP domain-containing protein	NA	NA	NA	NA	NA
QBB16954.1|2734764_2735469_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
QBB16955.1|2735505_2737170_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.3	1.1e-44
>prophage 211
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2741695	2742505	2866554		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
QBB16961.1|2741695_2742505_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
>prophage 212
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2766187	2769355	2866554		Leptospira_phage(100.0%)	1	NA	NA
QBB16996.1|2766187_2769355_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 213
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2781437	2782043	2866554		Pithovirus(100.0%)	1	NA	NA
QBB17013.1|2781437_2782043_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 214
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2801023	2801833	2866554		Staphylococcus_phage(100.0%)	1	NA	NA
QBB17032.1|2801023_2801833_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 215
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2805748	2809718	2866554		Staphylococcus_phage(50.0%)	5	NA	NA
QBB17036.1|2805748_2806249_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
QBB17037.1|2806296_2806554_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17038.1|2806610_2807564_+	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
QBB17039.1|2807644_2808769_-	hypothetical protein	NA	A0A2K9L3K5	Tupanvirus	22.8	5.5e-13
QBB17210.1|2809079_2809718_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
>prophage 216
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2822655	2823291	2866554		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
QBB17052.1|2822655_2823291_-	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 217
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2831169	2832051	2866554		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
QBB17060.1|2831169_2832051_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 218
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2838337	2838757	2866554		Bacillus_phage(100.0%)	1	NA	NA
QBB17065.1|2838337_2838757_+	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 219
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2846131	2847031	2866554		Brazilian_cedratvirus(100.0%)	1	NA	NA
QBB17072.1|2846131_2847031_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 220
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2859126	2860335	2866554		Salmonella_phage(100.0%)	1	NA	NA
QBB17084.1|2859126_2860335_-	Bcr/CflA family efflux MFS transporter	NA	S4TR35	Salmonella_phage	25.9	1.8e-33
>prophage 221
CP035670	Staphylococcus aureus subsp. aureus strain VB9352 chromosome, complete genome	2866554	2864074	2864740	2866554		Planktothrix_phage(100.0%)	1	NA	NA
QBB17090.1|2864074_2864740_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.2e-36
