The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	36543	120593	2841049	protease,portal,terminase,capsid,integrase,tail,holin,tRNA,head	Staphylococcus_phage(80.26%)	107	40464:40481	110382:110399
QBB17252.1|36543_37269_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
QBB17253.1|37249_39001_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.3e-21
QBB17254.1|39252_40170_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB17255.1|40172_42209_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.7	4.0e-54
40464:40481	attL	AATATAAAGTTAATGAAT	NA	NA	NA	NA
QBB17256.1|42250_43456_-|integrase	site-specific integrase	integrase	A0A2I6PEZ6	Staphylococcus_phage	100.0	1.6e-223
QBB17257.1|43581_44196_+	ATPase	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
QBB17258.1|44192_44339_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
QBB17259.1|44429_44825_-	hypothetical protein	NA	A0ZS06	Staphylococcus_virus	100.0	1.7e-70
QBB17260.1|45341_46058_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDG6	Staphylococcus_phage	99.6	7.8e-130
QBB17261.1|46221_46464_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	100.0	2.8e-39
QBB17262.1|46479_47232_+	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
QBB17263.1|47244_47505_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
QBB17264.1|47528_48068_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	98.9	3.2e-96
QBB17265.1|48124_48316_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
QBB17266.1|48317_48545_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	98.7	1.9e-37
QBB17267.1|48600_48927_+	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
QBB17268.1|48923_49142_+	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
QBB17269.1|49171_49435_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
QBB17270.1|49686_50004_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
QBB17271.1|49936_50269_+	DUF1108 family protein	NA	A0A2I6PDT0	Staphylococcus_phage	100.0	2.9e-55
QBB17272.1|50278_50500_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
QBB17273.1|50492_51272_+	ATP-binding protein	NA	A7TWM7	Staphylococcus_phage	100.0	4.3e-142
QBB19757.1|51355_51856_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
QBB17274.1|51868_52540_+	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
QBB17275.1|52676_52958_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
QBB17276.1|53084_53492_+	HNH endonuclease	NA	A7TWN1	Staphylococcus_phage	100.0	7.1e-72
QBB17277.1|53484_54207_+	helix-turn-helix domain-containing protein	NA	A7TWN2	Staphylococcus_phage	100.0	1.6e-106
QBB17278.1|54216_54990_+	AAA family ATPase	NA	A7TWN3	Staphylococcus_phage	100.0	3.9e-143
QBB17279.1|55157_55379_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
QBB17280.1|55389_55794_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
QBB17281.1|55798_55984_+	DUF3113 family protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
QBB17282.1|55984_56356_+	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	100.0	5.0e-56
QBB17283.1|56356_56605_+	hypothetical protein	NA	A7TWA8	Staphylococcus_phage	100.0	1.0e-41
QBB17284.1|56613_56985_+	acetyltransferase	NA	A0ZS31	Staphylococcus_virus	100.0	2.9e-64
QBB17285.1|56977_57226_+	DUF1024 family protein	NA	A7TWB0	Staphylococcus_phage	100.0	1.8e-38
QBB17286.1|57218_57746_+	dUTP pyrophosphatase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
QBB17287.1|57782_58019_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
QBB17288.1|58043_58280_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
QBB17289.1|58272_58422_+	transcriptional regulator	NA	A7TWB4	Staphylococcus_phage	100.0	4.8e-18
QBB19758.1|58421_58622_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
QBB19759.1|58525_58738_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17290.1|58644_59115_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
QBB17291.1|59229_59682_+	hypothetical protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
QBB19760.1|59696_60041_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
QBB17292.1|60170_60638_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
QBB17293.1|60640_62335_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
QBB17294.1|62309_62549_+	hypothetical protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
QBB19761.1|62614_63805_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
QBB17295.1|63797_64382_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
QBB17296.1|64469_65717_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
QBB17297.1|65752_65911_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
QBB17298.1|65919_66252_+|head,tail	phage head-tail adapter protein	head,tail	A7TWQ4	Staphylococcus_phage	100.0	2.1e-58
QBB19762.1|66238_66574_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
QBB17299.1|66573_66951_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
QBB17300.1|66947_67328_+	hypothetical protein	NA	A7TWC9	Staphylococcus_phage	100.0	5.8e-68
QBB17301.1|67328_68282_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
QBB17302.1|68346_68793_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
QBB17303.1|68852_68975_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
QBB17304.1|69030_73683_+|tail	phage tail tape measure protein	tail	A7TWD3	Staphylococcus_phage	100.0	0.0e+00
QBB17305.1|73682_75173_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
QBB17306.1|78962_79115_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
QBB17307.1|79162_79450_+	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
QBB17308.1|79505_79880_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
QBB17309.1|80005_80308_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
QBB17310.1|80318_81773_+	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
QBB17311.1|82162_83101_+	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
QBB17312.1|83096_84080_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
QBB19763.1|84262_84514_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
QBB17313.1|84604_85540_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB17314.1|85523_85670_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17315.1|85744_86653_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB17316.1|87107_88052_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
QBB17317.1|88453_88999_+	ECF transporter S component	NA	NA	NA	NA	NA
QBB17318.1|89104_89353_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
QBB17319.1|89460_90414_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17320.1|90403_91783_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	6.4e-56
QBB17321.1|91935_93216_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
QBB17322.1|93341_93458_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17323.1|93618_94605_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
QBB17324.1|94719_95688_-	asparaginase	NA	NA	NA	NA	NA
QBB17325.1|95764_96424_+	(d)CMP kinase	NA	NA	NA	NA	NA
QBB17326.1|96454_96571_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17327.1|96596_96734_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17328.1|96687_96879_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17329.1|97135_98311_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
QBB17330.1|98532_99843_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
QBB17331.1|99859_100858_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
QBB17332.1|101028_101301_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
QBB17333.1|101490_101805_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17334.1|101731_102304_+	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA	NA
QBB17335.1|102306_103032_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
QBB19764.1|103048_103993_+	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
QBB17336.1|104084_104534_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
QBB17337.1|104743_104944_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17338.1|105330_106497_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	2.0e-34
QBB17339.1|106522_107587_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
QBB17340.1|107596_108895_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
QBB17341.1|108901_110146_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17342.1|110159_110735_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
110382:110399	attR	AATATAAAGTTAATGAAT	NA	NA	NA	NA
QBB17343.1|110724_111312_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
QBB19765.1|111383_112064_+	zinc metallopeptidase	NA	NA	NA	NA	NA
QBB17344.1|112400_112718_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
QBB17345.1|112955_114098_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
QBB17346.1|114102_115305_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
QBB17347.1|115291_116263_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
QBB17348.1|116286_119007_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	3.7e-47
QBB17349.1|119300_120593_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	29.7	9.6e-54
>prophage 2
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	582475	590942	2841049		Synechococcus_phage(33.33%)	9	NA	NA
QBB17746.1|582475_583036_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	1.5e-27
QBB17747.1|583038_584067_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
QBB17748.1|584059_585544_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
QBB17749.1|585522_587712_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
QBB17750.1|587704_588376_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
QBB17751.1|588377_588641_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QBB17752.1|588640_589345_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	3.6e-47
QBB17753.1|589348_590473_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QBB17754.1|590459_590942_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	5.2e-21
>prophage 3
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	611705	637133	2841049	protease,bacteriocin	Staphylococcus_phage(25.0%)	26	NA	NA
QBB17768.1|611705_612671_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	31.7	1.0e-15
QBB17769.1|612752_613934_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
QBB17770.1|613971_614301_+	staphostatin B	NA	NA	NA	NA	NA
QBB17771.1|614538_615360_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
QBB17772.1|615352_616156_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
QBB17773.1|616142_617816_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
QBB19781.1|619116_619194_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17774.1|619344_620283_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
QBB17775.1|620334_620886_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBB17776.1|620975_621266_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	5.7e-07
QBB17777.1|621329_621461_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17778.1|622954_623311_+	DoxX family protein	NA	NA	NA	NA	NA
QBB17779.1|623399_623537_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
QBB17780.1|623677_623968_+	hypothetical protein	NA	NA	NA	NA	NA
QBB17781.1|624055_624697_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
QBB17782.1|624693_625014_-	YxeA family protein	NA	NA	NA	NA	NA
QBB17783.1|625016_626981_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
QBB19782.1|627024_627297_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
QBB17784.1|628240_628843_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBB17785.1|628857_629034_-	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
QBB17786.1|629232_630219_+	lipoate--protein ligase	NA	NA	NA	NA	NA
QBB17787.1|630299_630518_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
QBB17788.1|630727_631297_+	competence protein ComK	NA	NA	NA	NA	NA
QBB19783.1|631783_633295_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
QBB17789.1|633433_634792_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
QBB17790.1|634808_637133_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
>prophage 4
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	837639	851606	2841049		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
QBB17977.1|837639_838401_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	4.2e-17
QBB17978.1|838397_839354_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	6.1e-05
QBB17979.1|839340_840312_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
QBB17980.1|840681_841653_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
QBB17981.1|841772_843878_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
QBB17982.1|843840_844239_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
QBB17983.1|844388_844655_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
QBB17984.1|845039_845906_+	DMT family transporter	NA	NA	NA	NA	NA
QBB17985.1|845925_846426_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
QBB17986.1|846763_848269_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
QBB17987.1|848345_848447_-	hypothetical protein	NA	NA	NA	NA	NA
QBB17988.1|848537_849455_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	6.2e-07
QBB17989.1|849847_850390_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
QBB17990.1|850550_851606_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.8e-21
>prophage 5
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	863578	871396	2841049		Pandoravirus(16.67%)	10	NA	NA
QBB18000.1|863578_864730_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
QBB18001.1|864713_865307_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	3.7e-37
QBB18002.1|865657_866326_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
QBB18003.1|866327_866747_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
QBB18004.1|866750_867464_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	42.7	9.3e-51
QBB18005.1|867562_868147_+	hypothetical protein	NA	NA	NA	NA	NA
QBB18006.1|868426_868867_+	hypothetical protein	NA	NA	NA	NA	NA
QBB18007.1|869206_869680_+	DoxX family membrane protein	NA	NA	NA	NA	NA
QBB18008.1|869654_870341_+	response regulator transcription factor	NA	NA	NA	NA	NA
QBB18009.1|870340_871396_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 6
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2332913	2415589	2841049	protease,portal,capsid,terminase,integrase,tail,holin,head,transposase	Staphylococcus_phage(91.04%)	91	2346769:2346786	2369759:2369776
QBB19299.1|2332913_2333657_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBB19300.1|2333833_2334118_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
QBB19301.1|2334193_2335810_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	5.8e-157
QBB19302.1|2336511_2336724_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
QBB19303.1|2336720_2337311_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	94.7	1.2e-96
QBB19850.1|2337627_2338065_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19304.1|2338170_2338614_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBB19305.1|2339456_2340764_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
QBB19306.1|2340924_2341836_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB19307.1|2341897_2342743_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBB19308.1|2343114_2344338_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
QBB19309.1|2344772_2345825_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
QBB19310.1|2345846_2346863_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	3.9e-26
2346769:2346786	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
QBB19311.1|2347981_2349019_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
QBB19312.1|2349739_2349886_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
QBB19313.1|2349921_2350104_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
QBB19314.1|2350303_2351074_-	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
QBB19315.1|2351232_2351457_+	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
QBB19316.1|2351474_2351735_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
QBB19317.1|2352352_2353105_+	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	99.2	3.3e-139
QBB19318.1|2353348_2353489_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
QBB19319.1|2353503_2354136_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
QBB19320.1|2354194_2354515_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
QBB19321.1|2354511_2354673_+	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	98.1	7.2e-20
QBB19322.1|2354765_2355026_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
QBB19323.1|2355034_2355298_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
QBB19324.1|2355306_2357250_+	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	100.0	0.0e+00
QBB19325.1|2357251_2358172_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
QBB19326.1|2358237_2358870_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.4e-87
QBB19327.1|2358870_2359341_+	single-stranded DNA-binding protein	NA	A0A2I6PDH4	Staphylococcus_phage	100.0	5.7e-81
QBB19328.1|2359370_2360264_+	DnaD domain protein	NA	A0A2I6PDG7	Staphylococcus_phage	100.0	8.4e-142
QBB19329.1|2360270_2360489_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
QBB19330.1|2360497_2360902_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A2I6PDI7	Staphylococcus_phage	100.0	8.4e-73
QBB19331.1|2360914_2361286_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	100.0	2.7e-57
QBB19332.1|2361286_2361535_+	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
QBB19333.1|2361599_2362049_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
QBB19334.1|2362045_2362330_+	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	100.0	9.4e-47
QBB19335.1|2362322_2362577_+	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	100.0	6.5e-39
QBB19851.1|2362696_2362897_+	DUF1514 domain-containing protein	NA	A0A2I6PDJ9	Staphylococcus_phage	100.0	1.4e-28
QBB19336.1|2362924_2363341_+	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
QBB19337.1|2363572_2363872_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
QBB19338.1|2364002_2364347_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
QBB19339.1|2366019_2367207_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
QBB19340.1|2367190_2367928_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
QBB19341.1|2367951_2369097_+|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
QBB19342.1|2369116_2369401_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
QBB19343.1|2369390_2369675_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
QBB19344.1|2369658_2370021_+|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2369759:2369776	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
QBB19345.1|2370017_2370422_+	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
QBB19346.1|2370418_2370826_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
QBB19347.1|2370826_2371471_+|tail	phage tail protein	tail	A0A2I6PDI6	Staphylococcus_phage	100.0	1.1e-119
QBB19348.1|2371512_2371737_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
QBB19349.1|2371786_2372137_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
QBB19350.1|2372381_2376911_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.9	0.0e+00
QBB19351.1|2376907_2378392_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
QBB19352.1|2382181_2382334_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
QBB19353.1|2382380_2382668_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
QBB19354.1|2382725_2383022_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
QBB19355.1|2383173_2383350_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
QBB19356.1|2383402_2383510_-	hypothetical protein	NA	NA	NA	NA	NA
QBB19357.1|2383561_2383816_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
QBB19358.1|2383827_2384583_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
QBB19359.1|2384773_2385265_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
QBB19360.1|2385711_2385867_-	amidase	NA	NA	NA	NA	NA
QBB19361.1|2385793_2386048_+	amidase	NA	Q4ZCK0	Staphylococcus_virus	90.7	3.4e-11
QBB19362.1|2386342_2386792_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
QBB19363.1|2387473_2387824_+	inhibitor	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
QBB19364.1|2387876_2388137_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
QBB19365.1|2388115_2388424_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	77.5	9.3e-24
QBB19366.1|2388447_2388627_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
QBB19367.1|2388998_2389199_-	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	98.5	1.0e-26
QBB19368.1|2389584_2391633_+	MAP domain-containing protein	NA	NA	NA	NA	NA
QBB19369.1|2391911_2393198_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
QBB19370.1|2393397_2393496_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19371.1|2393738_2393897_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19372.1|2394173_2394554_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB19373.1|2394550_2395447_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	6.5e-17
QBB19374.1|2395447_2396128_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
QBB19375.1|2396995_2397736_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
QBB19376.1|2397801_2398365_-	thioredoxin family protein	NA	NA	NA	NA	NA
QBB19377.1|2398485_2399010_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19378.1|2399069_2399627_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
QBB19379.1|2399623_2400466_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19380.1|2400522_2401563_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
QBB19381.1|2402013_2402187_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19382.1|2405911_2406277_+|transposase	transposase	transposase	NA	NA	NA	NA
QBB19383.1|2406305_2406725_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.1e-30
QBB19384.1|2408928_2409774_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
QBB19385.1|2410433_2411078_-	AAA family ATPase	NA	A0A059NT77	Lactococcus_phage	46.6	4.6e-49
QBB19386.1|2413821_2414202_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
QBB19387.1|2414476_2415589_+|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
>prophage 7
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2554516	2570953	2841049	transposase	Staphylococcus_phage(100.0%)	20	NA	NA
QBB19503.1|2554516_2554621_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	87.5	7.2e-05
QBB19504.1|2554794_2555019_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	86.8	6.8e-24
QBB19505.1|2555200_2555584_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19506.1|2555594_2555771_+	hypothetical protein	NA	NA	NA	NA	NA
QBB19507.1|2556142_2556712_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	95.0	1.2e-77
QBB19508.1|2556908_2557481_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	7.8e-24
QBB19509.1|2557581_2557923_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	7.3e-54
QBB19510.1|2557963_2558590_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	6.4e-88
QBB19511.1|2558665_2559661_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	1.9e-70
QBB19512.1|2559741_2560392_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	92.6	4.8e-54
QBB19855.1|2560693_2561149_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
QBB19513.1|2561307_2562786_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	1.6e-283
QBB19514.1|2562790_2563792_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
QBB19515.1|2563788_2564046_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	90.6	2.0e-40
QBB19516.1|2564111_2564585_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
QBB19856.1|2564589_2565336_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	7.8e-141
QBB19517.1|2565713_2567306_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
QBB19518.1|2567676_2568870_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	2.2e-217
QBB19519.1|2568994_2569903_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	2.9e-137
QBB19520.1|2570119_2570953_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
>prophage 8
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2583681	2592685	2841049		Staphylococcus_phage(100.0%)	9	NA	NA
QBB19532.1|2583681_2584077_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	96.9	4.5e-71
QBB19533.1|2584094_2585387_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	94.2	7.5e-216
QBB19534.1|2585386_2585701_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
QBB19535.1|2586227_2587730_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
QBB19858.1|2588222_2589254_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
QBB19536.1|2589260_2589893_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
QBB19537.1|2589903_2591085_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
QBB19538.1|2591097_2591562_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
QBB19539.1|2591683_2592685_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 9
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2598043	2610782	2841049	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
QBB19544.1|2598043_2598607_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	100.0	2.2e-103
QBB19545.1|2598603_2599557_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
QBB19546.1|2599667_2600849_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
QBB19547.1|2601136_2603554_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
QBB19548.1|2603575_2603887_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
QBB19549.1|2604212_2610782_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	92.6	1.9e-294
>prophage 10
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2733575	2742615	2841049	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
QBB19658.1|2733575_2734580_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
QBB19659.1|2734581_2735607_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QBB19660.1|2735629_2736769_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
QBB19661.1|2736787_2737048_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
QBB19662.1|2737319_2739599_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
QBB19663.1|2739801_2742075_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	3.1e-63
QBB19664.1|2742096_2742615_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 11
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	2841049	2814145	2822475	2841049	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
QBB19727.1|2814145_2815963_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
QBB19728.1|2816186_2817293_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
QBB19729.1|2817423_2818101_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
QBB19730.1|2818103_2819204_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
QBB19731.1|2819317_2820664_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	9.1e-55
QBB19732.1|2820673_2821564_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
QBB19733.1|2821689_2822475_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
