assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154005.1_ASM415400v1	CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1	777236-777535	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|CP031640.1_766730_767372_+,NA|35aa|down_1|CP031640.1_778821_778926_+	NA|452aa|up_9|CP031640.1_765251_766607_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|CP031640.1_766730_767372_+	NA	NA|377aa|up_7|CP031640.1_767434_768565_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|CP031640.1_768574_769327_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|CP031640.1_769326_770091_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|CP031640.1_770090_770723_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|CP031640.1_771167_775274_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|CP031640.1_775273_776143_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|CP031640.1_776139_776481_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|CP031640.1_776470_777133_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|378aa|down_0|CP031640.1_777683_778817_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|35aa|down_1|CP031640.1_778821_778926_+	NA	NA|611aa|down_2|CP031640.1_778985_780818_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|405aa|down_3|CP031640.1_781124_782339_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_4|CP031640.1_782524_782962_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|CP031640.1_783091_784111_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|CP031640.1_784317_784743_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|CP031640.1_784761_785253_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_8|CP031640.1_785269_786079_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|CP031640.1_786075_786903_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCA_004154005.1_ASM415400v1	CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	2	1297234-1297396	2	PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACTCACCCATGAAGGGTGAGACT	33	0	0	NA	NA	I-C	2	2	TypeI-C,TypeI-U,TypeI-U?	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|64aa|up_7|CP031640.1_1290921_1291113_-,NA|174aa|up_4|CP031640.1_1292672_1293194_+,NA|188aa|down_8|CP031640.1_1308366_1308930_-	NA|67aa|up_9|CP031640.1_1289803_1290004_+	pfam13619, KTSC, KTSC domain	NA|243aa|up_8|CP031640.1_1290182_1290911_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|CP031640.1_1290921_1291113_-	NA	NA|120aa|up_6|CP031640.1_1291908_1292268_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|CP031640.1_1292281_1292662_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|CP031640.1_1292672_1293194_+	NA	NA|385aa|up_3|CP031640.1_1293312_1294467_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|CP031640.1_1294577_1295684_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|CP031640.1_1295726_1296350_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|CP031640.1_1296362_1297073_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|CP031640.1_1297543_1297837_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|CP031640.1_1297847_1298873_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|CP031640.1_1298869_1299544_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|CP031640.1_1299545_1300394_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|CP031640.1_1300398_1302294_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|CP031640.1_1302293_1303022_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|CP031640.1_1303154_1305563_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|CP031640.1_1305716_1308365_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|CP031640.1_1308366_1308930_-	NA	NA|67aa|down_9|CP031640.1_1308926_1309127_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCA_004154005.1_ASM415400v1	CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	3	1920413-1920509	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|CP031640.1_1915518_1915692_-,NA|538aa|up_8|CP031640.1_1915978_1917592_-,NA|174aa|up_7|CP031640.1_1917581_1918103_-,NA|123aa|up_6|CP031640.1_1918112_1918481_-,NA|64aa|up_5|CP031640.1_1918389_1918581_-,NA|111aa|up_4|CP031640.1_1918580_1918913_-,NA|61aa|up_3|CP031640.1_1918924_1919107_-,NA|90aa|up_2|CP031640.1_1919327_1919597_-,NA	NA|58aa|up_9|CP031640.1_1915518_1915692_-	NA	NA|538aa|up_8|CP031640.1_1915978_1917592_-	NA	NA|174aa|up_7|CP031640.1_1917581_1918103_-	NA	NA|123aa|up_6|CP031640.1_1918112_1918481_-	NA	NA|64aa|up_5|CP031640.1_1918389_1918581_-	NA	NA|111aa|up_4|CP031640.1_1918580_1918913_-	NA	NA|61aa|up_3|CP031640.1_1918924_1919107_-	NA	NA|90aa|up_2|CP031640.1_1919327_1919597_-	NA	NA|189aa|up_1|CP031640.1_1919626_1920193_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031640.1_1920208_1920397_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031640.1_1920565_1921009_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031640.1_1921188_1922352_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031640.1_1922508_1923120_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031640.1_1923849_1924122_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031640.1_1924138_1925506_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031640.1_1925535_1925988_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031640.1_1925984_1927961_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031640.1_1928050_1929949_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031640.1_1930072_1930390_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031640.1_1931165_1932287_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
