The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	36552	48865	1894087		Synechococcus_phage(28.57%)	8	NA	NA
QBB53235.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB53236.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB53237.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB53238.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB53239.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB53240.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB53241.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB53242.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	589505	652758	1894087	integrase,portal,transposase,tail,terminase,tRNA,capsid	Temperate_phage(79.69%)	87	581496:581514	637306:637324
581496:581514	attL	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB53703.1|589505_590642_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	31.0	2.3e-43
QBB53704.1|590978_592112_+|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB53705.1|592280_592535_+	DUF1912 family protein	NA	NA	NA	NA	NA
QBB53706.1|592555_592951_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBB53707.1|592973_593207_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53708.1|593376_593556_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBB53709.1|593552_594116_+	shikimate kinase	NA	NA	NA	NA	NA
QBB53710.1|594117_596766_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.3e-150
QBB53711.1|596919_599328_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
QBB53712.1|599460_600189_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
QBB53713.1|600188_602084_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
QBB53714.1|602088_602937_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
QBB53715.1|602938_603613_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
QBB53716.1|603609_604635_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB53717.1|604645_604939_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB53718.1|605409_606120_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
QBB53719.1|606132_606756_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
QBB53720.1|606798_607905_+	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
QBB53721.1|608015_609170_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	100.0	2.8e-206
QBB53722.1|609288_609810_-	hypothetical protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
QBB53723.1|609820_610201_-	ImmA/IrrE family metallo-endopeptidase	NA	Q938N7	Temperate_phage	100.0	5.3e-69
QBB53724.1|610214_610574_-	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
QBB53725.1|611369_611561_+	hypothetical protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
QBB53726.1|611571_612300_+	oxidoreductase	NA	Q938N5	Temperate_phage	100.0	6.9e-134
QBB53727.1|612478_612679_-	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
QBB53728.1|612667_612922_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53729.1|612848_613061_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53730.1|613167_613425_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53731.1|613453_613639_+	hypothetical protein	NA	Q938N3	Temperate_phage	100.0	1.1e-24
QBB53732.1|613732_613990_+	transcriptional regulator	NA	A0A1S5SFN6	Streptococcus_phage	46.4	1.2e-11
QBB53733.1|614135_614525_+	DnaD domain protein	NA	Q938N2	Temperate_phage	99.2	1.1e-58
QBB53734.1|614505_614739_+	hypothetical protein	NA	Q938N1	Temperate_phage	100.0	5.0e-38
QBB53735.1|614735_614876_+	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	52.3	7.5e-05
QBB53736.1|614886_615141_+	hypothetical protein	NA	Q938N0	Temperate_phage	100.0	7.4e-43
QBB53737.1|615162_615645_+	hypothetical protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
QBB53738.1|615645_616320_+	single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	100.0	2.5e-106
QBB53739.1|616312_616732_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	100.0	1.6e-71
QBB53740.1|616737_616941_+	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
QBB53741.1|616940_617381_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.3	8.5e-79
QBB53742.1|617377_617734_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	85.6	1.6e-51
QBB53743.1|617730_617982_+	hypothetical protein	NA	Q938M4	Temperate_phage	100.0	6.8e-41
QBB53744.1|617975_618260_+	DUF3310 domain-containing protein	NA	Q938M3	Temperate_phage	100.0	5.4e-50
QBB53745.1|618256_618526_+	hypothetical protein	NA	Q938M2	Temperate_phage	100.0	4.0e-47
QBB53746.1|618535_618940_+	hypothetical protein	NA	Q938M1	Temperate_phage	100.0	6.0e-71
QBB53747.1|619103_619610_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	100.0	9.8e-95
QBB53748.1|620050_620491_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
QBB53749.1|620636_620858_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53750.1|620967_621231_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53751.1|621205_621391_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53752.1|621467_621986_+	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
QBB53753.1|621964_622642_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
QBB54972.1|622764_623034_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
QBB53754.1|623094_623472_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
QBB54973.1|623522_623996_+	hypothetical protein	NA	Q938L4	Temperate_phage	99.4	4.3e-76
QBB53755.1|624078_625290_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
QBB53756.1|625303_626806_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
QBB53757.1|626810_628289_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
QBB53758.1|628260_628500_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
QBB53759.1|628561_628828_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
QBB53760.1|628953_629568_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
QBB53761.1|629571_630390_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
QBB53762.1|630443_630860_+	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
QBB53763.1|630849_631182_+|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
QBB53764.1|631181_631538_+|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
QBB53765.1|631534_631933_+|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
QBB53766.1|631932_632418_+|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
QBB53767.1|632456_632891_+	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
QBB53768.1|632894_633476_+	hypothetical protein	NA	Q938K4	Temperate_phage	100.0	1.3e-106
QBB53769.1|633465_636723_+	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	99.8	0.0e+00
QBB53770.1|636719_637436_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
637306:637324	attR	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB53771.1|637432_639580_+	peptidase	NA	Q938K1	Temperate_phage	95.9	0.0e+00
QBB53772.1|639576_640791_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB53773.1|640792_641107_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53774.1|641117_643004_+	hyaluronidase	NA	Q938J9	Temperate_phage	96.5	2.1e-243
QBB53775.1|643015_643447_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
QBB53776.1|643449_644061_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
QBB53777.1|644071_644368_+	hypothetical protein	NA	Q938J6	Temperate_phage	100.0	7.5e-47
QBB53778.1|644364_644550_+	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
QBB53779.1|644660_645863_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	100.0	3.3e-242
QBB53780.1|646002_646527_+	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
QBB53781.1|646514_647381_+	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
QBB53782.1|647684_648464_+	pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	100.0	5.4e-145
QBB53783.1|648939_649515_+	phospholipase	NA	Q938J0	Temperate_phage	100.0	1.7e-111
QBB53784.1|649508_649796_+	hypothetical protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
QBB53785.1|649860_650043_+	Paratox	NA	A3F673	Streptococcus_phage	76.7	2.6e-18
QBB53786.1|650287_651028_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	8.0e-05
QBB53787.1|651024_652758_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.2	3.9e-26
>prophage 3
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	824695	924285	1894087	integrase,portal,head,transposase,tail,terminase,tRNA,capsid	Streptococcus_phage(40.3%)	114	844666:844725	890838:890933
QBB53944.1|824695_824920_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB53945.1|825239_826499_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB53946.1|826664_828368_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB53947.1|828393_830529_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB53948.1|830603_831911_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB53949.1|831907_832768_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB53950.1|832789_833605_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB53951.1|833720_834521_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB53952.1|834675_835512_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB53953.1|835511_836873_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB53954.1|837146_838394_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB53955.1|838636_839656_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB53956.1|839771_841265_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB53957.1|841299_843564_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB53958.1|843820_844441_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
844666:844725	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB53959.1|844803_845892_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB53960.1|846141_846951_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB53961.1|846963_847707_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB53962.1|848199_848415_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB53963.1|848473_848632_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB53964.1|848661_849261_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB53965.1|849314_849524_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB53966.1|849512_849899_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB53967.1|849972_850200_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB53968.1|850307_850817_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53969.1|850871_851117_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB53970.1|851075_851285_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53971.1|851434_851674_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53972.1|851840_852026_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB53973.1|852104_852401_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB53974.1|852397_852535_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB53975.1|852615_852945_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB53976.1|852944_853139_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB53977.1|853135_853420_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53978.1|853416_854100_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB53979.1|854135_855539_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB53980.1|855543_856026_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB53981.1|856043_857597_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB53982.1|857865_858735_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB53983.1|858688_859039_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB53984.1|859022_859379_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB53985.1|859375_859621_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB53986.1|859620_859857_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB53987.1|860020_860305_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB53988.1|860306_860939_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB53989.1|860943_861423_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB53990.1|861871_862306_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB53991.1|862883_863798_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53992.1|863816_864278_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53993.1|864415_864793_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB53994.1|864844_865030_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB54977.1|865092_865560_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB53995.1|865537_866845_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB53996.1|866856_868359_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB53997.1|868339_869902_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB53998.1|869905_870091_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53999.1|870160_870475_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB54000.1|870477_870744_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB54001.1|870887_871421_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB54002.1|871430_871811_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB54003.1|871813_872896_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB54004.1|872905_873148_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54005.1|873161_873515_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB54006.1|873511_873820_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB54007.1|873800_874166_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB54008.1|874162_874552_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB54978.1|874606_875230_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB54009.1|875283_875637_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB54979.1|875711_876008_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB54010.1|876022_879658_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB54011.1|879689_880469_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB54012.1|880465_882520_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB54013.1|882516_883731_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB54014.1|883732_884047_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54015.1|884057_885953_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB54016.1|885966_886128_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54017.1|886130_886748_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB54018.1|886758_887055_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB54019.1|887051_887237_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB54020.1|887348_888683_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB54021.1|888758_889466_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB54022.1|889576_890335_-	DNAse	NA	NA	NA	NA	NA
QBB54023.1|890574_890763_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB54024.1|891353_891968_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
890838:890933	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB54025.1|892094_892880_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB54026.1|892889_893588_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB54027.1|893587_893959_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB54028.1|894143_897254_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB54029.1|897333_898347_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB54030.1|898409_899912_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB54031.1|900129_900687_+	signal peptidase I	NA	NA	NA	NA	NA
QBB54032.1|900862_902677_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB54033.1|902872_903208_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB54034.1|903314_903956_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB54035.1|903965_904595_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB54036.1|904610_905447_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB54037.1|905816_906590_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54038.1|906959_908195_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB54039.1|908314_909637_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB54040.1|910165_912484_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB54041.1|912846_913095_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB54042.1|913131_913743_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB54043.1|913753_913942_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB54044.1|913954_914494_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB54045.1|914534_914735_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB54046.1|914742_915234_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB54047.1|915396_916038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB54048.1|916180_916723_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB54049.1|916840_917542_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB54050.1|917556_920193_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB54051.1|920284_920881_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB54052.1|920891_921848_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB54053.1|921944_923285_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB54054.1|923400_924285_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 4
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	1244137	1254741	1894087		Streptococcus_phage(57.14%)	9	NA	NA
QBB54351.1|1244137_1245280_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB54352.1|1245514_1245955_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54353.1|1245984_1247253_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB54354.1|1247340_1248693_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB54355.1|1248914_1249256_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB54356.1|1249316_1250483_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB54357.1|1250576_1251263_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB54358.1|1251259_1252423_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB54359.1|1252530_1254741_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 5
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	1532617	1538491	1894087		Streptococcus_phage(100.0%)	8	NA	NA
QBB54605.1|1532617_1533445_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB54606.1|1533518_1533875_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB54607.1|1534173_1534803_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB54608.1|1534849_1535242_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54609.1|1535268_1536132_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB54610.1|1536136_1536460_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB54611.1|1536962_1537838_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB54612.1|1537855_1538491_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	1800541	1820766	1894087	integrase,holin	Streptococcus_phage(56.25%)	27	1803740:1803760	1818067:1818087
QBB54839.1|1800541_1801762_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB55007.1|1801772_1803755_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1803740:1803760	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB55008.1|1803849_1804995_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB54840.1|1805249_1805393_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB54841.1|1806254_1807022_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB54842.1|1807175_1807382_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB54843.1|1807415_1807616_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB54844.1|1807636_1808044_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB54845.1|1808455_1808983_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB54846.1|1809209_1809404_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB54847.1|1809603_1809795_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB54848.1|1809935_1810388_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54849.1|1810489_1810822_+	hypothetical protein	NA	NA	NA	NA	NA
QBB55009.1|1810821_1811013_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54850.1|1811024_1811354_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54851.1|1811356_1811629_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB54852.1|1811629_1812496_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB54853.1|1812507_1813902_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB54854.1|1814195_1814450_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54855.1|1814446_1814620_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB54856.1|1814800_1815310_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB54857.1|1815383_1815872_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB54858.1|1816096_1816279_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54859.1|1816275_1816638_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB54860.1|1816612_1816996_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB54861.1|1817160_1817814_+	hypothetical protein	NA	NA	NA	NA	NA
QBB54862.1|1818210_1820766_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1818067:1818087	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031622	Streptococcus pyogenes strain MGAS28686 chromosome, complete genome	1894087	1847176	1857164	1894087	integrase	Streptococcus_phage(75.0%)	15	1846750:1846764	1854312:1854326
1846750:1846764	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB54897.1|1847176_1847350_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB54898.1|1847636_1849250_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB54899.1|1849239_1849761_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54900.1|1849770_1850139_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB55010.1|1850047_1850239_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54901.1|1850238_1850571_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54902.1|1850582_1850765_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54903.1|1850985_1851255_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB54904.1|1851284_1851851_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB54905.1|1851866_1852055_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB54906.1|1852223_1852667_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB54907.1|1852846_1854010_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB54908.1|1854166_1854778_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1854312:1854326	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB54909.1|1855507_1855780_-	hypothetical protein	NA	NA	NA	NA	NA
QBB54910.1|1855796_1857164_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
