assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	1	378782-378882	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|CP020957.1_371389_371773_-,NA|98aa|up_6|CP020957.1_372726_373020_-,NA|34aa|up_1|CP020957.1_378006_378108_+,NA|86aa|up_0|CP020957.1_378315_378573_-,NA|221aa|down_1|CP020957.1_379972_380635_-,NA|179aa|down_7|CP020957.1_386726_387263_-	NA|194aa|up_9|CP020957.1_370742_371324_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|CP020957.1_371389_371773_-	NA	NA|209aa|up_7|CP020957.1_372027_372654_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|CP020957.1_372726_373020_-	NA	NA|508aa|up_5|CP020957.1_373098_374622_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP020957.1_374637_375207_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP020957.1_375698_376454_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP020957.1_376533_377922_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|CP020957.1_378006_378108_+	NA	NA|86aa|up_0|CP020957.1_378315_378573_-	NA	NA|319aa|down_0|CP020957.1_378898_379855_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP020957.1_379972_380635_-	NA	NA|136aa|down_2|CP020957.1_380777_381185_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP020957.1_381697_382276_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP020957.1_382275_383544_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP020957.1_383581_385048_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP020957.1_385072_386614_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP020957.1_386726_387263_-	NA	NA|235aa|down_8|CP020957.1_387655_388360_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP020957.1_388758_389031_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	2	623069-623161	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|CP020957.1_619552_619660_+,NA|103aa|up_1|CP020957.1_621771_622080_-,NA|169aa|down_4|CP020957.1_626908_627415_+,NA|239aa|down_5|CP020957.1_627576_628293_+	NA|179aa|up_9|CP020957.1_614903_615440_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|CP020957.1_615608_616085_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|CP020957.1_616124_617420_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|CP020957.1_617447_617969_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|CP020957.1_618467_619478_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|CP020957.1_619552_619660_+	NA	NA|128aa|up_3|CP020957.1_619785_620169_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|CP020957.1_620165_621827_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_1|CP020957.1_621771_622080_-	NA	NA|212aa|up_0|CP020957.1_622215_622851_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP020957.1_623289_624117_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP020957.1_624264_625215_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP020957.1_625269_625989_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP020957.1_625972_626773_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP020957.1_626908_627415_+	NA	NA|239aa|down_5|CP020957.1_627576_628293_+	NA	NA|263aa|down_6|CP020957.1_628461_629250_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP020957.1_629500_629875_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP020957.1_630822_631752_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP020957.1_631946_632171_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	3	738941-739023	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|CP020957.1_725541_725748_+,NA|34aa|down_1|CP020957.1_740479_740581_+,NA|82aa|down_3|CP020957.1_742229_742475_-,NA|89aa|down_6|CP020957.1_744275_744542_+	NA|69aa|up_9|CP020957.1_725541_725748_+	NA	NA|237aa|up_8|CP020957.1_725835_726546_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP020957.1_726529_727534_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP020957.1_728007_729948_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP020957.1_730218_732102_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP020957.1_732113_733895_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP020957.1_734116_735094_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP020957.1_735086_736601_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP020957.1_736840_737899_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP020957.1_738249_738792_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP020957.1_739471_740389_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|CP020957.1_740479_740581_+	NA	NA|502aa|down_2|CP020957.1_740658_742164_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|CP020957.1_742229_742475_-	NA	NA|167aa|down_4|CP020957.1_742504_743005_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP020957.1_743024_743891_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP020957.1_744275_744542_+	NA	NA|133aa|down_7|CP020957.1_744691_745090_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP020957.1_745052_747158_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP020957.1_747275_748247_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	4	779993-780073	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	780019-780047|780019-780047|780019-780047|780019-780047|780019-780047|780019-780047|780019-780047|780019-780047|780019-780047|780019-780047	CP020957.1_2753416-2753444|CP020957.1_340277-340249|CP020957.1_340332-340304|CP020957.1_1796173-1796145|CP020957.1_828774-828802|CP020957.1_897232-897260|CP020957.1_1140846-1140818|CP020957.1_1617591-1617619|CP020957.1_1963455-1963483|CP020957.1_2503330-2503302	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|CP020957.1_770906_771011_+,NA|36aa|up_5|CP020957.1_772443_772551_+,NA|70aa|down_5|CP020957.1_785355_785565_-	NA|191aa|up_9|CP020957.1_767347_767920_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP020957.1_768333_770865_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP020957.1_770906_771011_+	NA	NA|370aa|up_6|CP020957.1_771179_772290_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP020957.1_772443_772551_+	NA	NA|280aa|up_4|CP020957.1_772698_773538_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP020957.1_773711_774362_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP020957.1_774358_774595_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP020957.1_774863_776849_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP020957.1_776856_779703_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP020957.1_780309_781242_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP020957.1_781247_782087_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP020957.1_782094_782580_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP020957.1_782587_784027_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP020957.1_784093_785029_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|70aa|down_5|CP020957.1_785355_785565_-	NA	NA|304aa|down_6|CP020957.1_785908_786820_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|CP020957.1_786816_787812_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|CP020957.1_787921_788866_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|CP020957.1_789439_790027_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	6	828708-828789	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	828732-828765|828732-828765	CP020957.1_1349103-1349070|CP020957.1_1438254-1438287	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|CP020957.1_827610_827724_+,NA|38aa|down_0|CP020957.1_829022_829136_+	NA|206aa|up_9|CP020957.1_822465_823083_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP020957.1_823237_823732_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP020957.1_824130_824553_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP020957.1_824700_825417_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP020957.1_825499_826039_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP020957.1_826188_826509_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP020957.1_826652_827009_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP020957.1_827166_827547_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP020957.1_827610_827724_+	NA	NA|293aa|up_0|CP020957.1_827725_828604_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP020957.1_829022_829136_+	NA	NA|129aa|down_1|CP020957.1_829345_829732_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP020957.1_829724_830021_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP020957.1_830270_831296_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP020957.1_831288_831984_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP020957.1_832001_832823_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_6|CP020957.1_833176_833371_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_7|CP020957.1_833603_834455_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|CP020957.1_834782_835544_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|CP020957.1_835641_836949_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	7	877563-877845	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	7	877593-877618|877593-877618|877593-877618|877593-877618|877707-877732|877707-877732|877707-877732	CP020957.1_877537-877562|CP020957.1_748413-748438|CP020957.1_2753353-2753328|CP020957.1_2753409-2753384|CP020957.1_785502-785477|CP020957.1_1952697-1952672|CP020957.1_340115-340140	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP020957.1_866451_867948_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP020957.1_867940_868270_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP020957.1_868281_868710_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP020957.1_868702_871108_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP020957.1_871238_871622_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP020957.1_871685_872279_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP020957.1_872694_873072_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP020957.1_873433_874561_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP020957.1_874868_876059_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP020957.1_876167_877412_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP020957.1_877914_878844_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP020957.1_879085_880465_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP020957.1_880454_881660_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP020957.1_882010_883342_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP020957.1_883666_884242_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP020957.1_884246_884771_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP020957.1_884786_885362_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP020957.1_885521_888998_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP020957.1_888998_892652_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP020957.1_892817_893720_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	8	1056536-1056623	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|CP020957.1_1056412_1056532_+,NA|45aa|down_0|CP020957.1_1056632_1056767_-,NA|432aa|down_1|CP020957.1_1056918_1058214_+,NA|68aa|down_2|CP020957.1_1058234_1058438_-	NA|730aa|up_9|CP020957.1_1044990_1047180_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|CP020957.1_1047158_1048643_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|CP020957.1_1048635_1049664_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|CP020957.1_1049666_1050233_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|CP020957.1_1050247_1051726_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|CP020957.1_1051747_1052995_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|CP020957.1_1053259_1054066_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|CP020957.1_1054058_1055459_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|CP020957.1_1055473_1056049_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|CP020957.1_1056412_1056532_+	NA	NA|45aa|down_0|CP020957.1_1056632_1056767_-	NA	NA|432aa|down_1|CP020957.1_1056918_1058214_+	NA	NA|68aa|down_2|CP020957.1_1058234_1058438_-	NA	NA|391aa|down_3|CP020957.1_1058638_1059811_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|CP020957.1_1059864_1060407_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|CP020957.1_1060560_1060827_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|CP020957.1_1060829_1062548_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|CP020957.1_1062784_1063018_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|CP020957.1_1063215_1064577_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|CP020957.1_1064573_1065593_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	9	1140880-1140965	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1140910-1140935|1140910-1140935|1140910-1140935|1140910-1140935|1140910-1140935	CP020957.1_2753353-2753328|CP020957.1_748469-748494|CP020957.1_2753409-2753384|CP020957.1_748413-748438|CP020957.1_748525-748550	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_8|CP020957.1_1134744_1135251_+,NA|62aa|up_5|CP020957.1_1137163_1137349_-,NA|73aa|up_4|CP020957.1_1137558_1137777_-,NA|78aa|up_3|CP020957.1_1137970_1138204_-,NA|49aa|up_1|CP020957.1_1140312_1140459_+,NA|75aa|up_0|CP020957.1_1140415_1140640_+,NA|76aa|down_6|CP020957.1_1147939_1148167_+	NA|134aa|up_9|CP020957.1_1133671_1134073_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|CP020957.1_1134744_1135251_+	NA	NA|166aa|up_7|CP020957.1_1135509_1136007_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|CP020957.1_1136160_1136511_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|CP020957.1_1137163_1137349_-	NA	NA|73aa|up_4|CP020957.1_1137558_1137777_-	NA	NA|78aa|up_3|CP020957.1_1137970_1138204_-	NA	NA|320aa|up_2|CP020957.1_1138680_1139640_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|CP020957.1_1140312_1140459_+	NA	NA|75aa|up_0|CP020957.1_1140415_1140640_+	NA	NA|239aa|down_0|CP020957.1_1141140_1141857_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP020957.1_1141964_1142690_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP020957.1_1142784_1143510_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP020957.1_1143947_1144949_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|CP020957.1_1144971_1145904_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|CP020957.1_1146126_1147632_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP020957.1_1147939_1148167_+	NA	NA|316aa|down_7|CP020957.1_1148471_1149419_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP020957.1_1149667_1149856_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP020957.1_1150767_1150902_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	10	2187532-2187682	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP020957.1_2182403_2182634_-,NA|364aa|up_0|CP020957.1_2186422_2187514_+,NA|35aa|down_0|CP020957.1_2188013_2188118_-,NA|31aa|down_2|CP020957.1_2190230_2190323_+	NA|237aa|up_9|CP020957.1_2178013_2178724_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP020957.1_2178844_2179288_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP020957.1_2179487_2179901_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP020957.1_2180358_2181732_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP020957.1_2182403_2182634_-	NA	NA|313aa|up_4|CP020957.1_2182664_2183603_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP020957.1_2184037_2184703_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP020957.1_2184854_2185175_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP020957.1_2185176_2186157_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP020957.1_2186422_2187514_+	NA	NA|35aa|down_0|CP020957.1_2188013_2188118_-	NA	NA|68aa|down_1|CP020957.1_2188542_2188746_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|31aa|down_2|CP020957.1_2190230_2190323_+	NA	NA|286aa|down_3|CP020957.1_2191027_2191885_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|CP020957.1_2191952_2192735_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|CP020957.1_2192966_2194772_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|CP020957.1_2195452_2196991_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|CP020957.1_2197025_2199158_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|CP020957.1_2199169_2199604_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|CP020957.1_2199603_2200710_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCA_004193875.1_ASM419387v1	CP020957	Staphylococcus aureus strain C3948 chromosome, complete genome	11	2311695-2311888	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	15	2311718-2311750|2311718-2311750|2311718-2311750|2311718-2311750|2311718-2311750|2311718-2311750|2311774-2311809|2311774-2311809|2311774-2311809|2311774-2311809|2311833-2311865|2311833-2311865|2311833-2311865|2311833-2311865|2311833-2311865	CP020957.1_785457-785489|CP020957.1_1140899-1140867|CP020957.1_1349057-1349025|CP020957.1_1438300-1438332|CP020957.1_1952652-1952684|CP020957.1_2587723-2587755|CP020957.1_1140846-1140811|CP020957.1_1796173-1796138|CP020957.1_1617591-1617626|CP020957.1_1963455-1963490|CP020957.1_785457-785489|CP020957.1_1140899-1140867|CP020957.1_1349057-1349025|CP020957.1_1952652-1952684|CP020957.1_2587723-2587755	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|CP020957.1_2302222_2302387_+,NA|106aa|up_8|CP020957.1_2302631_2302949_+,NA|84aa|up_5|CP020957.1_2308073_2308325_+,NA|57aa|up_0|CP020957.1_2311464_2311635_+,NA	NA|55aa|up_9|CP020957.1_2302222_2302387_+	NA	NA|106aa|up_8|CP020957.1_2302631_2302949_+	NA	NA|1056aa|up_7|CP020957.1_2303135_2306303_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP020957.1_2306419_2307685_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP020957.1_2308073_2308325_+	NA	NA|255aa|up_4|CP020957.1_2308316_2309081_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP020957.1_2309242_2309683_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP020957.1_2309675_2310887_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP020957.1_2310988_2311339_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|CP020957.1_2311464_2311635_+	NA	NA|341aa|down_0|CP020957.1_2312029_2313052_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP020957.1_2313071_2313671_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP020957.1_2313677_2313911_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP020957.1_2313916_2314363_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP020957.1_2314376_2314862_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP020957.1_2314858_2316118_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP020957.1_2316180_2316675_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP020957.1_2316676_2317183_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP020957.1_2317212_2318217_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP020957.1_2318386_2318992_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
