The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	131800	177725	2757748	integrase,holin,capsid,protease,tail,portal,head,terminase	Staphylococcus_phage(95.31%)	68	132803:132818	177111:177126
QBC22713.1|131800_131980_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
QBC22714.1|132289_132550_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
QBC22715.1|132602_132953_-	inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
132803:132818	attL	TTAATTCATTAGCTAA	NA	NA	NA	NA
QBC22716.1|133462_133759_-	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
QBC22717.1|133665_133920_-	amidase	NA	Q4ZCK0	Staphylococcus_virus	93.0	8.0e-13
QBC22718.1|133846_134002_+	amidase	NA	NA	NA	NA	NA
QBC22719.1|134448_134940_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	99.4	1.6e-86
QBC22720.1|135130_135886_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
QBC22721.1|135897_136152_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
QBC22722.1|136203_136311_+	hypothetical protein	NA	NA	NA	NA	NA
QBC22723.1|136363_136540_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
QBC22724.1|136648_137422_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
QBC22725.1|137794_138169_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
QBC22726.1|138224_138512_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
QBC22727.1|138557_138710_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
QBC22728.1|138702_142485_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.3	0.0e+00
QBC22729.1|142500_143985_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
QBC22730.1|143981_148511_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	99.9	0.0e+00
QBC22731.1|148755_149106_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
QBC22732.1|149155_149380_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
QBC22733.1|149421_150066_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
QBC22734.1|150066_150474_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
QBC22735.1|150470_150875_-	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
QBC22736.1|150871_151234_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
QBC25176.1|151217_151502_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
QBC22737.1|151491_151776_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
QBC22738.1|151795_152941_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
QBC22739.1|152964_153702_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
QBC22740.1|153685_154873_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
QBC22741.1|154888_156550_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
QBC22742.1|156546_156891_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
QBC22743.1|157020_157320_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
QBC22744.1|157551_157968_-	transcriptional regulator	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
QBC25177.1|157995_158196_-	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
QBC22745.1|158195_158345_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
QBC22746.1|158341_158548_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
QBC22747.1|158584_159121_-	dUTPase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
QBC22748.1|159113_159524_-	acetyltransferase	NA	C8CH13	Staphylococcus_phage	99.3	6.7e-70
QBC22749.1|159520_160030_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
QBC22750.1|160026_160476_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
QBC22751.1|160540_160783_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
QBC22752.1|160786_161155_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
QBC22753.1|161167_161572_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
QBC22754.1|161580_161799_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
QBC22755.1|161805_162657_-	DnaD domain protein	NA	I1W658	Staphylococcus_phage	94.2	6.8e-133
QBC22756.1|162686_163157_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
QBC22757.1|163157_163775_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
QBC22758.1|163855_164776_-	recombinase	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
QBC22759.1|164777_166721_-	ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.1	0.0e+00
QBC22760.1|166729_166993_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
QBC22761.1|167001_167262_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
QBC22762.1|167354_167516_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
QBC22763.1|167512_167833_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
QBC22764.1|167891_168524_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
QBC22765.1|168538_168679_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
QBC22766.1|168709_168904_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
QBC22767.1|168920_169673_-	oxidoreductase	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
QBC22768.1|169729_170269_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
QBC22769.1|170292_170553_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
QBC22770.1|170565_170805_-	XRE family transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
QBC22771.1|170975_171683_+	XRE family transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
QBC22772.1|171836_172022_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
QBC22773.1|172221_172389_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
QBC22774.1|172528_173068_+	growth inhibitor PemK	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
QBC22775.1|173239_174277_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
QBC22776.1|174964_175522_+	sugar transferase	NA	NA	NA	NA	NA
QBC22777.1|175521_176409_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBC22778.1|176462_177725_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	26.0	6.6e-23
177111:177126	attR	TTAGCTAATGAATTAA	NA	NA	NA	NA
>prophage 2
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	755195	763015	2757748		Hokovirus(16.67%)	10	NA	NA
QBC23297.1|755195_756251_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
QBC23298.1|756250_756937_-	response regulator transcription factor	NA	NA	NA	NA	NA
QBC23299.1|756911_757385_-	DoxX family protein	NA	NA	NA	NA	NA
QBC23300.1|757726_758167_-	hypothetical protein	NA	NA	NA	NA	NA
QBC23301.1|758446_759031_-	hypothetical protein	NA	NA	NA	NA	NA
QBC23302.1|759129_759843_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
QBC23303.1|759846_760266_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
QBC23304.1|760267_760936_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
QBC23305.1|761286_761880_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
QBC23306.1|761863_763015_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	774987	789774	2757748		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
QBC23315.1|774987_776046_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
QBC23316.1|776396_776939_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
QBC23317.1|777110_777206_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23318.1|777618_778536_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
QBC23319.1|778626_778728_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23320.1|778805_780311_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
QBC23321.1|780376_780622_-	hypothetical protein	NA	NA	NA	NA	NA
QBC23322.1|780651_781152_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
QBC23323.1|781171_782038_-	DMT family transporter	NA	NA	NA	NA	NA
QBC23324.1|782422_782689_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
QBC25211.1|782838_783237_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
QBC23325.1|783199_785305_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
QBC23326.1|785422_786394_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
QBC23327.1|786526_786631_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23328.1|786907_787063_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23329.1|787101_788073_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
QBC23330.1|788059_789016_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
QBC23331.1|789012_789774_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	840692	852868	2757748	integrase,capsid	Staphylococcus_phage(50.0%)	14	832872:832886	853673:853687
832872:832886	attL	AAAAAAGTATTAATC	NA	NA	NA	NA
QBC23377.1|840692_843065_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	7.8e-94
QBC23378.1|843086_843551_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
QBC23379.1|844106_844322_-	hypothetical protein	NA	NA	NA	NA	NA
QBC25213.1|844333_845440_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	6.9e-77
QBC23380.1|845454_846192_-	XRE family transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	31.2	1.2e-05
QBC23381.1|846343_846562_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBC23382.1|846712_846937_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
QBC23383.1|846937_847237_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	66.7	5.9e-31
QBC23384.1|847328_849701_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	38.9	4.1e-135
QBC23385.1|850373_850718_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	5.5e-41
QBC23386.1|850755_850962_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23387.1|850942_851149_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23388.1|851135_852194_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
QBC23389.1|852376_852868_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
853673:853687	attR	GATTAATACTTTTTT	NA	NA	NA	NA
>prophage 5
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	974324	1029190	2757748	tRNA,protease,bacteriocin	Streptococcus_phage(28.57%)	56	NA	NA
QBC23513.1|974324_975314_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
QBC23514.1|975608_976004_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
QBC23515.1|976374_977094_+	adaptor protein MecA	NA	NA	NA	NA	NA
QBC23516.1|977214_977472_+	competence protein	NA	NA	NA	NA	NA
QBC23517.1|977477_978200_+	competence protein	NA	NA	NA	NA	NA
QBC23518.1|978247_980056_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
QBC23519.1|980515_981322_-	DsbA family protein	NA	NA	NA	NA	NA
QBC23520.1|981344_981710_-	globin	NA	NA	NA	NA	NA
QBC23521.1|981813_982407_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
QBC23522.1|982592_982940_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23523.1|982956_983592_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
QBC23524.1|983608_984418_+	NAD(+) kinase	NA	NA	NA	NA	NA
QBC23525.1|984414_985269_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QBC23526.1|985289_986675_+	magnesium transporter	NA	NA	NA	NA	NA
QBC23527.1|986684_988529_+	sodium:proton antiporter	NA	NA	NA	NA	NA
QBC23528.1|988806_989577_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
QBC23529.1|989771_990857_-	AI-2E family transporter	NA	NA	NA	NA	NA
QBC23530.1|991198_992767_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
QBC23531.1|992908_993667_+	esterase family protein	NA	NA	NA	NA	NA
QBC23532.1|993860_994370_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23533.1|994482_995691_-	MFS transporter	NA	NA	NA	NA	NA
QBC23534.1|995650_996826_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
QBC23535.1|997258_998740_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
QBC25219.1|998723_998984_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23536.1|998983_1000546_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
QBC23537.1|1000847_1001651_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
QBC23538.1|1001869_1004194_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
QBC23539.1|1004210_1005569_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
QBC25220.1|1005707_1007219_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
QBC23540.1|1007705_1008275_-	competence protein ComK	NA	NA	NA	NA	NA
QBC23541.1|1008484_1008703_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
QBC23542.1|1008783_1009770_-	lipoate--protein ligase	NA	NA	NA	NA	NA
QBC23543.1|1009968_1010145_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
QBC23544.1|1010159_1010762_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBC23545.1|1011677_1011779_+	hypothetical protein	NA	NA	NA	NA	NA
QBC25221.1|1011788_1012061_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
QBC23546.1|1012104_1014069_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
QBC23547.1|1014071_1014392_+	YxeA family protein	NA	NA	NA	NA	NA
QBC23548.1|1014388_1015030_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
QBC23549.1|1015117_1015408_-	hypothetical protein	NA	NA	NA	NA	NA
QBC23550.1|1015686_1015974_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23551.1|1015979_1017461_+	glycosyltransferase	NA	NA	NA	NA	NA
QBC23552.1|1017549_1017906_-	DoxX family protein	NA	NA	NA	NA	NA
QBC23553.1|1018382_1019342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBC23554.1|1019387_1019519_-	hypothetical protein	NA	NA	NA	NA	NA
QBC23555.1|1019582_1019873_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
QBC23556.1|1019962_1020514_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBC23557.1|1020565_1021504_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
QBC23558.1|1021654_1021759_+	hypothetical protein	NA	NA	NA	NA	NA
QBC23559.1|1021835_1023047_+	isochorismate synthase	NA	NA	NA	NA	NA
QBC23560.1|1023033_1024707_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
QBC23561.1|1024693_1025497_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
QBC23562.1|1025489_1026311_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
QBC23563.1|1026549_1026879_-	staphostatin B	NA	NA	NA	NA	NA
QBC23564.1|1026916_1028098_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
QBC23565.1|1028179_1029190_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 6
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	1594505	1602817	2757748	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
QBC24087.1|1594505_1595291_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
QBC24088.1|1595416_1596307_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
QBC24089.1|1596316_1597663_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
QBC24090.1|1597776_1598877_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
QBC24091.1|1598879_1599557_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
QBC24092.1|1599687_1600794_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
QBC24093.1|1601017_1602817_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	1669335	1680994	2757748	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
QBC24160.1|1669335_1671525_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
QBC24161.1|1671952_1672471_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
QBC24162.1|1672492_1674766_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
QBC24163.1|1674968_1677248_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
QBC24164.1|1677522_1677783_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
QBC24165.1|1677764_1678940_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	7.3e-85
QBC24166.1|1678962_1679988_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QBC24167.1|1679989_1680994_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
CP020959	Staphylococcus aureus strain H489 chromosome, complete genome	2757748	1806549	1921643	2757748	tRNA,protease,bacteriocin,transposase	Staphylococcus_phage(92.42%)	116	NA	NA
QBC24278.1|1806549_1813110_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
QBC24279.1|1813435_1813747_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
QBC24280.1|1813768_1816186_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
QBC24281.1|1816473_1817655_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
QBC24282.1|1817764_1818718_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
QBC24283.1|1818714_1819278_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
QBC24284.1|1819397_1819799_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBC24285.1|1821376_1822204_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBC24286.1|1822206_1822326_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24287.1|1822337_1822529_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24288.1|1822437_1823439_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
QBC24289.1|1823560_1824025_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
QBC24290.1|1824037_1825219_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
QBC24291.1|1825229_1825862_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
QBC25250.1|1825868_1826900_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
QBC24292.1|1827392_1828895_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
QBC24293.1|1829417_1829732_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
QBC24294.1|1829731_1831024_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
QBC24295.1|1831041_1831437_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
QBC24296.1|1831731_1832586_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
QBC24297.1|1832861_1833086_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24298.1|1833284_1833755_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
QBC24299.1|1833867_1834311_+	competence protein ComK	NA	NA	NA	NA	NA
QBC24300.1|1834297_1834741_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
QBC24301.1|1835036_1835672_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
QBC24302.1|1836111_1836825_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
QBC24303.1|1837084_1837387_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24304.1|1837642_1838008_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
QBC24305.1|1838004_1838358_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
QBC24306.1|1840440_1841274_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
QBC24307.1|1841485_1842394_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
QBC24308.1|1842518_1843712_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
QBC24309.1|1844082_1845675_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
QBC24310.1|1845810_1846296_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
QBC25251.1|1846670_1847417_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
QBC24311.1|1847421_1847895_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
QBC24312.1|1847960_1848218_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
QBC24313.1|1848214_1849216_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
QBC24314.1|1849220_1850699_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
QBC24315.1|1850857_1851313_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
QBC24316.1|1851615_1852266_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
QBC24317.1|1852346_1853342_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
QBC24318.1|1853417_1854044_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
QBC24319.1|1854084_1854429_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
QBC24320.1|1854526_1855078_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
QBC24321.1|1855295_1855937_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
QBC24322.1|1856050_1856236_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24323.1|1856237_1856414_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24324.1|1856424_1856808_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24325.1|1856999_1857209_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
QBC24326.1|1857411_1857555_-	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
QBC24327.1|1857757_1857853_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
QBC24328.1|1857975_1858077_+	hypothetical protein	NA	NA	NA	NA	NA
QBC25252.1|1858424_1858784_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
QBC24329.1|1865474_1867214_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	1.3e-287
QBC24330.1|1867194_1867329_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24331.1|1867393_1868113_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
QBC24332.1|1868263_1868980_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
QBC24333.1|1869081_1869189_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24334.1|1869137_1869857_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
QBC24335.1|1870007_1870724_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
QBC24336.1|1870825_1870933_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24337.1|1870881_1871601_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
QBC24338.1|1871751_1872468_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
QBC24339.1|1872569_1872677_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24340.1|1872625_1873345_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
QBC24341.1|1873464_1874184_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
QBC24342.1|1874241_1874964_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
QBC24343.1|1875088_1875796_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
QBC24344.1|1876231_1876450_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24345.1|1876759_1877326_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
QBC24346.1|1877798_1878497_-	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
QBC24347.1|1878493_1879255_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
QBC24348.1|1879251_1879944_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
QBC24349.1|1879966_1881340_-	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
QBC24350.1|1881349_1881868_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
QBC25253.1|1881883_1883128_-	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
QBC24351.1|1883120_1886114_-|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
QBC24352.1|1886178_1886322_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
QBC24353.1|1886765_1886957_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24354.1|1887058_1887202_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
QBC24355.1|1887443_1888427_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	1.5e-184
QBC24356.1|1888428_1889364_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
QBC24357.1|1890163_1890703_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
QBC24358.1|1890715_1891504_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
QBC24359.1|1893960_1894515_-	serine hydrolase family protein	NA	NA	NA	NA	NA
QBC24360.1|1894608_1894836_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24361.1|1894837_1896238_-	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
QBC24362.1|1896261_1897185_-	ferrochelatase	NA	NA	NA	NA	NA
QBC24363.1|1897242_1898280_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
QBC24364.1|1898269_1898380_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24365.1|1898542_1899046_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
QBC24366.1|1899169_1900393_-	ABC transporter permease	NA	NA	NA	NA	NA
QBC24367.1|1900385_1901126_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
QBC24368.1|1901259_1901682_+	HIT family protein	NA	NA	NA	NA	NA
QBC24369.1|1901823_1902189_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
QBC24370.1|1902921_1903479_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
QBC24371.1|1903683_1904646_+	foldase	NA	NA	NA	NA	NA
QBC24372.1|1904766_1905708_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
QBC24373.1|1905704_1908641_-	DNA repair protein Rad50	NA	NA	NA	NA	NA
QBC24374.1|1908630_1909827_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
QBC24375.1|1910117_1910216_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24376.1|1910598_1910943_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
QBC24377.1|1911011_1912136_-	DUF445 family protein	NA	NA	NA	NA	NA
QBC24378.1|1912314_1912779_-	transcriptional regulator	NA	NA	NA	NA	NA
QBC24379.1|1913133_1913757_-	response regulator transcription factor	NA	NA	NA	NA	NA
QBC24380.1|1913778_1914891_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
QBC24381.1|1915053_1915875_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QBC24382.1|1916337_1917723_-	class II fumarate hydratase	NA	NA	NA	NA	NA
QBC25254.1|1917918_1918314_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24383.1|1918432_1918795_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24384.1|1918819_1919026_+	hypothetical protein	NA	NA	NA	NA	NA
QBC24385.1|1919090_1919243_-	hypothetical protein	NA	NA	NA	NA	NA
QBC24386.1|1919267_1919867_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
QBC24387.1|1920025_1920496_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
QBC24388.1|1920500_1921643_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
